1. Genomic and epigenomic EBF1 alterations modulate TERT expression in gastric cancer
- Author
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Xing, Manjie, Ooi, Wen Fong, Tan, Jing, Qamra, Aditi, Lee, Po-Hsien, Li, Zhimei, Xu, Chang, Padmanabhan, Nisha, Lim, Jing Quan, Guo, Yu Amanda, Yao, Xiaosai, Amit, Mandoli, Ng, Ley Moy, Sheng, Taotao, Wang, Jing, Huang, Kie Kyon, Anene-Nzelu, Chukwuemeka George, Ho, Shamaine Wei Ting, Ray, Mohana, Ma, Lijia, Fazzi, Gregorio, Lim, Kevin Junliang, Wijaya, Giovani Claresta, Zhang, Shenli, Nandi, Tannistha, Yan, Tingdong, Chang, Mei Mei, Das, Kakoli, Isa, Zul Fazreen Adam, Wu, Jeanie, Poon, Polly Suk Yean, Lam, Yue Ning, Lin, Joyce Suling, Tay, Su Ting, Lee, Ming Hui, Tan, Angie Lay Keng, Ong, Xuewen, White, Kevin, Rozen, Steven George, Beer, Michael, Foo, Roger Sik Yin, Grabsch, Heike Irmgard, Skanderup, Anders Jacobsen, Li, Shang, Teh, Bin Tean, and Tan, Patrick
- Subjects
Analysis ,Health aspects ,Mortality -- Singapore ,Stomach cancer -- Health aspects -- Analysis ,Vorinostat -- Health aspects -- Analysis ,Cancer genetics -- Health aspects -- Analysis ,Cancer -- Analysis -- Health aspects ,Nivolumab -- Analysis -- Health aspects ,Transcription (Genetics) -- Analysis -- Health aspects ,Telomerase -- Health aspects -- Analysis ,Pembrolizumab -- Health aspects -- Analysis - Abstract
Introduction Gastric cancer (GC) is a leading cause of global cancer mortality (1), with a particularly high prevalence in East Asia. With the exception of Japan and South Korea, where [...], Transcriptional reactivation of telomerase catalytic subunit (TERT) is a frequent hallmark of cancer, occurring in 90% of human malignancies. However, specific mechanisms driving TERT reactivation remain obscure for many tumor types and in particular gastric cancer (GC), a leading cause of global cancer mortality. Here, through comprehensive genomic and epigenomic analysis of primary GCs and GC cell lines, we identified the transcription factor early B cell factor 1 (EBF1) as a TERT transcriptional repressor and inactivation of EBF1 function as a major cause of TERT upregulation. Abolishment of EBF1 function occurs through 3 distinct (epi)genomic mechanisms. First, EBF1 is epigenetically silenced via DNA methyltransferase, polycomb-repressive complex 2 (PRC2), and histone deacetylase activity in GCs. Second, recurrent, somatic, and heterozygous EBF1 DNA-binding domain mutations result in the production of dominant-negative EBF1 isoforms. Third, more rarely, genomic deletions and rearrangements proximal to the TERT promoter remobilize or abolish EBF7-binding sites, derepressing TERT and leading to high TERT expression. EBF1 is also functionally required for various malignant phenotypes in vitro and in vivo, highlighting its importance for GC development. These results indicate that multimodal genomic and epigenomic alterations underpin TERT reactivation in GC, converging on transcriptional repressors such as EBF1.
- Published
- 2020
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