4,429 results on '"Peng, G."'
Search Results
2. Research Trends and Hotspots on Asthma and Depression: A Bibliometric Analysis
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Peng G, Cheng B, Ding R, and Dai A
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asthma ,depression ,bibliometric analysis ,hotspots ,research trends ,Immunologic diseases. Allergy ,RC581-607 - Abstract
Guoran Peng,1 Beibei Cheng,2 Rongzhen Ding,3 Aiguo Dai2– 4 1College of Integrated Chinese and Western Medicine, Hunan University of Chinese Medicine, Changsha, Hunan, People’s Republic of China; 2Department of Respiratory Diseases, Medical School, Hunan University of Chinese Medicine, Changsha, Hunan, People’s Republic of China; 3Hunan Provincial Key Laboratory of Vascular Biology and Translational Medicine, Hunan University of Chinese Medicine, Changsha, Hunan, People’s Republic of China; 4Department of Respiratory Medicine, First Affiliated Hospital, Hunan University of Chinese Medicine, Changsha, Hunan, People’s Republic of ChinaCorrespondence: Aiguo Dai, Department of Respiratory Diseases, Medical School, Hunan University of Chinese Medicine, 300 Xueshi Road, Hanpu Science & Education Park, Yuelu District, Changsha, Hunan, 410208, People’s Republic of China, Email daiaiguo@hnucm.edu.cnPurpose: Asthma and depression are prevalent conditions with significant comorbidity, impacting patients’ quality of life. This bibliometric study aims to analyze research trends and hotspots in the field from 2000 to 2023, identifying key contributions and predicting future directions.Methods: We conducted a systematic search in the Web of Science Core Collection (WoSCC) for articles on asthma and depression, published between 2000 and 2023. Bibliometrics, which involves the application of mathematical and statistical methods to analyze scholarly literature, was employed in this study to systematically assess the research trends and hotspots in the field of asthma and depression. VOSviewer and CiteSpace software were utilized for visual analysis and data visualization, enabling us to map collaboration networks and identify research hotspots and trends within the asthma and depression literature.Results: Our analysis retrieved 3067 papers from 937 journals, involving 14,631 authors and 4006 institutions across 106 countries. The United States, Columbia University, the Journal of Asthma, and Christer Janson were the most prolific contributors. Six primary research themes emerged: quality of life, childhood asthma, primary care, substance P, intervention, and emotion. Additionally, Burst detection analysis identified emerging topics, including severe asthma, other respiratory diseases, and oxidative stress.Conclusion: This bibliometric analysis has revealed significant insights into the research trends and hotspots in the field of asthma and depression. The primary findings indicate a growing body of research highlighting the impact of depression on asthma control and patients’ quality of life, the need for psychological interventions in treating comorbid asthma and depression, and the emerging focus on severe asthma and oxidative stress mechanisms. These findings underscore the importance of continued research in these areas to advance our understanding and improve clinical outcomes for patients with these comorbid conditions.Keywords: asthma, depression, bibliometric analysis, hotspots, research trends
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- 2024
3. A Case of 17q12 Microdeletion Syndrome in a MODY5 Type Diabetes with HNF-1β Gene Mutation Accompanied
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Zhang S, Ma Y, Zang X, Heng H, Liu X, Peng G, Liu R, Liang J, and Geng H
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17q12 microdeletion syndrome ,hnf-1β gene ,special-type diabetes ,mody5 ,polycystic kidneys ,liver damage ,Medicine (General) ,R5-920 ,Genetics ,QH426-470 - Abstract
Shuping Zhang,1,* Yamei Ma,1,* Xiu Zang,2 Hao Heng,2 Xuekui Liu,2 Gangshan Peng,3 Ran Liu,3 Jun Liang,1,2,* Houfa Geng1,2,* 1Graduate School, Bengbu Medical University, Bengbu, Anhui, People’s Republic of China; 2Department of Endocrinology, Xuzhou Central Hospital, Xuzhou, Jiangsu, People’s Republic of China; 3The Affiliated Xuzhou Clinical College, Xuzhou Medical University, Xuzhou, Jiangsu, People’s Republic of China*These authors contributed equally to this workCorrespondence: Houfa Geng; Jun Liang, Email genghoufa@xzhmu.edu.cn; liangjun@xzhmu.edu.cnAbstract: Maturity Onset Diabetes of the Young (MODY) is an autosomal dominant inherited disorder prevalent among adolescents. Typically, it manifests with hyperglycemia before the age of 25. MODY5 is attributed to a mutation in the Hepatocyte Nuclear Factor-1β (HNF-1β) gene. A complete absence of HNF-1β is observed in 50% of those with MODY5. The 17q12 microdeletion syndrome closely linked with MODY5. Its incidence in the general population is around 1 in 14,500 and is linked with facial deformities, diabetes, polycystic kidneys, pancreatic hypertrophy, liver anomalies, and neuropsychological impairments. The most primary clinical signs are predominantly associated with the HNF-1β gene deletion. We chronicle the case of a male of 19 years of age diagnosed with diabetes, who, alongside persistent liver damage and polycystic kidneys, was referred from a community hospital to the Xuzhou Central Hospital. His clinical presentation included diabetes, liver dysfunction, polycystic kidneys, lipid irregularities, insulin resistance, and fatty atrophy. Subsequent genetic screening unveiled a 17q12 chromosomal deletion and an absence of the Hepatocyte Nuclear Factor-1β (HNF-1β) gene. Hence, for adolescent patients lacking a familial diabetes history but exhibiting symptoms like polycystic kidneys, liver damage, lipid irregularities, and fatty atrophy, a thorough assessment for the 17q12 microdeletion syndrome becomes imperative.Keywords: 17q12 microdeletion syndrome, HNF-1β gene, special-type diabetes, MODY5, polycystic kidneys, liver damage
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- 2024
4. Analyses of the collective properties of hadronic matter in Au-Au collisions at 54.4 GeV
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Waqas, M., Peng, G. X., Ajaz, M., Ismail, A. Haj, and Dawi, E. A.
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High Energy Physics - Phenomenology ,Nuclear Theory - Abstract
We investigated the strange hadrons transverse momentum ($p_T$) spectra in Au-Au collision at $\sqrt {s_{NN}}$ = 54.4 GeV in the framework of modified Hagedorn function with embedded flow. We extracted the kinetic freeze-out temperature $T_0$, transverse flow velocity $\beta_T$, kinetic freeze-out volume $V$, mean transverse momentum $
$, the entropy parameter $n$ and the multiplicity parameter $N_0$. We reported that all these parameters increase towards the central collisions. The larger kinetic freeze-out temperature , transverse flow velocity, kinetic freeze-out volume and the entropy parameter (n) in central collisions compared to peripheral collisions show the early decoupling of the particles in central collisions. In addition, all the above parameters are mass dependent. The kinetic freeze-out temperature ($T_0$), the entropy parameter $n$ and mean transverse momentum ($ $) are larger for massive particles, while the transverse flow velocity ($\beta_T$), kinetic freeze-out volume ($V$) and the multiplicity parameter ($N_0$) show the opposite behavior. Larger $T_0$, $n$ and smaller $\beta_T$ as well as $V$ of the heavier particles indicates the early freeze-out of the heavier particles, while larger $ $ for the heavier particles evince that the effect of radial flow is stronger in heavier particles. The separate set of parameters for each particle shows the multiple kinetic freeze-out scenario, where the mass dependent kinetic freeze-out volume shows the volume differential freeze-out scenario. We also checked the correlation among different parameters, which include the correlation of $T_0$ and $\beta_T$, $T_0$ and $V$, $\beta_T$ and $V$, $ $ and $T_0$, $ $ and $\beta_T$, $ $ and $V$, $n$ and $T_0$, $n$ and $\beta_T$, and $n$ and $V$, and they all are observed to have positive correlations with each other which validates our results., Comment: 14 pages, 7 figures - Published
- 2022
5. Sub-monolayer Biolasers: Lower Gain, Higher Sensitivity
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Gong, C., Yang, X., Tang, S. J., Zhang, Q. Q., Wang, Y., Liu, Y. L., Chen, Y. C., Peng, G. D., Fan, X., Xiao, Y. F., Rao, Y. J., and Gong, Y.
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Physics - Optics ,Physics - Applied Physics ,Physics - Biological Physics ,78A70 - Abstract
Biomarker detection is the key to identifying health risks. However, designing sensitive biosensors in a single-use mode for disease diagnosis remains a major challenge. Here, we report sub-monolayer biolasers with remarkable repeatability for ultrasensitive and disposable biomarker detection. The biolaser sensors are designed by employing the telecom optical fibers as distributed optical microcavities and pushing the gain molecules down to the sub-monolayer level. We observe a status transition from the monolayer biolaser to the sub-monolayer biolaser by tuning the specific conjugation. By reducing the fluorophores down to the threshold density (~ 3.2 x 10-13 mol/cm2), we demonstrate an ultimate sensitivity of sub-monolayer biolaser with six orders of magnitude enhancement compared with the monolayer biolasers. We further achieved ultrasensitive immunoassay for Parkinson's disease biomarker, alpha-synuclein, with a lower limit of detection of 0.32 pM in serum. This biosensor with massive fabrication capability at ultralow cost provides a general method for the ultrasensitive disposable biodetection of disease biomarkers., Comment: 27 pages, 15 figures
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- 2022
6. Extraction of different temperatures and kinetic freeze-out volume in high energy collisions
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Waqas, M., Peng, G. -X., Ajaz, M., Ismail, A. Haj, Wazir, Z., and Li, L. -L.
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Nuclear Theory ,High Energy Physics - Phenomenology - Abstract
We analyze the transverse momentum ($p_T$) spectra, $1/N_{ev}$[(1/2$\pi$$p_T$) $d^2$$N$/$dyd$$p_T$], of kaon, proton, deuteron and triton in different centrality events in gold-gold (Au-Au) collisions at Relativistic Heavy Ion Collisions (RHIC) by Hagedorn thermal model and extracted the excitation function of effective temperature, kinetic freeze-out volume, initial temperature and kinetic freeze-out temperature. We perceived that the effective temperature, initial temperature and kinetic freeze-out temperature sharply increases from 7.7 GeV to 14.5 GeV and then remain static from 14.5-39 GeV, and this consistency may disclose that the onset energy of the phase transition of partial deconfinement and the whole deconfinement are 14.5 and 39 GeV respectively. The kinetic freeze-out volume and mean transverse momentum grows with the rise of collision energy. Furthermore, the different extracted temperatures are observed in the order of time evolution of the interacting system, and they (as well as kinetic freeze-out volume) have an increasing trend from peripheral to central collisions. We also observed the mass dependence of the effective temperature and kinetic freeze-out volume where former increases while the later decreases for heavier particles, which indicates the early freeze-out of the heavier particles., Comment: 27 pages, 10 figures
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- 2022
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7. Correction: Systematic synthesis of bisected N -glycans and unique recognitions by glycan-binding proteins
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Cao, Xuefeng, Wang, Shuaishuai, Gadi, Madhusudhan Reddy, Liu, Ding, Wang, Peng G, Wan, Xiu-Feng, Zhang, Jian, Chen, Xi, Pepi, Lauren E, Azadi, Parastoo, and Li, Lei
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Chemical Sciences - Abstract
[This corrects the article DOI: 10.1039/D1SC05435J.].
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- 2022
8. The Impact of Social Media on Users’ Self-Efficacy and Loneliness: An Analysis of the Mediating Mechanism of Social Support
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Jia W, Liu L, and Peng G
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social media ,self-efficacy ,loneliness ,social support ,mediation analysis ,Psychology ,BF1-990 ,Industrial psychology ,HF5548.7-5548.85 - Abstract
Wei Jia,1 Lei Liu,1 Gang Peng2 1School of Politics and Public Administration, Qingdao University, Qingdao, Shandong, People’s Republic of China; 2School of Statistics, Southwestern University of Finance and Economics, Chengdu, Sichuan, People’s Republic of ChinaCorrespondence: Lei Liu, School of Politics and Public Administration, Qingdao University, 308 Ningxia Road, Laoshan District, Qingdao, Shandong, 266071, People’s Republic of China, Tel +86-15110224681, Email ll15450176@163.comPurpose: The integration of social media into all areas of society has become a typical phenomenon of the Internet era. This study’s core objective is to dissect the relationship between social media, self-efficacy and loneliness, especially emphasizing the mediating function of social support.Patients and Methods: The research data is derived from the pooled cross-sectional data combined from the four-period data of the China Family Panel Studies (CFPS). The study employs Ordinary Least Squares (OLS) regression as the basic research method, and utilizes Instrumental Variables (IV) and other methods to conduct robustness checks.Results: Social media usage frequency (SMUF) enhances self-efficacy and loneliness through social support. Social support promotes self-efficacy and alleviates users’ loneliness. In self-efficacy, social support plays a fully mediating role. Moreover, education (human capital) has a significant moderating effect. There are noticeable differences in the response of different characteristics groups to SMUF.Conclusion: This study reveals how social media impacts self-efficacy and loneliness through social support. Based on the research results, avoiding prolonged usage of social media and improving digital literacy are the crucial means to exert the positive benefits of social media.Keywords: social media, self-efficacy, loneliness, social support, mediation analysis
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- 2024
9. Matching-invariant running quark masses in Quantum Chromodynamics
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Chen, H. M., Liu, L. M., Wang, J. T., Waqas, M., and Peng, G. X.
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High Energy Physics - Phenomenology - Abstract
The conventional quark mass is not continuous at thresholds. In this paper, we derive matchinginvariant quark masses which are continuous everywhere. They are expanded as an obvious function of the logarithmic Lambda scaled energy. The expansion coefficients are related to the original gamma and beta functions, with concretization to four loop level. The results show that the new expressions for the quark masses converge indeed much faster.
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- 2021
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10. Freezeout properties of different light nuclei at the RHIC Beam Energy Scan
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Waqas, M., Peng, G. X., Wang, Rui-Qin, Ajaz, Muhammad, and Ismail, Abd Al Karim Haj
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Nuclear Theory ,High Energy Physics - Phenomenology - Abstract
We study the transverse momentum spectra of light nuclei (deuteron, anti-deuteron and triton) produced in Gold-Gold (Au-Au) collisions in different centrality bins by the blast wave model with Tsallis statistics. The model results are in agreement with the experimental data measured by STAR Collaboration in special transverse momentum ranges. We extracted the kinetic freezeout temperature, transverse flow velocity and kinetic freezeout volume. It is observed that kinetic freezeout temperature and transverse flow velocity increases initially, and then saturates from 14.5-39 GeV, while the kinetic freezeout volume increase initially up to 19.6 GeV but saturates from 19.6-39 GeV. This may indicate that the phase transition starts in part volume that ends in the whole volume at 39 GeV and the critical point may exists somewhere in the energy range of 14.5-39 GeV. The present work observed that the kinetic freezeout temperature, transverse flow velocity and kinetic freezeout volume has a decreasing trend from central to peripheral collisions. We found the freezeout volume of triton is smaller than those of deuteron and anti-deuteron, which shows that triton freezeout earlier than that of deuteron and anti-deuteron., Comment: 21 pages, 8 figures
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- 2021
11. Strangelets at finite temperature in an equivparticle model
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Chen, H. M., Xia, C. J., and Peng, G. X.
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High Energy Physics - Phenomenology ,Nuclear Theory - Abstract
The properties of strangelets at finite temperature are studied within the framework of an equivparticle model, where a new quark mass scaling and self-consistent thermodynamic treatment are adopted. The effects of finite volume and Coulomb energy are taken into account. Our results show that the temperature T, baryon number A and perturbation interactions have strong influences on the properties of strangelets. It is found that the energy per baryon M/A and charge-to-mass ratio fz decrease with baryon number A, while the mechanically stable radius R and strangeness per baryon fs are increasing. For a strangelet with a fixed baryon number, we note that as temperature T increases the quantites M/A, R, and fs are increasing while fz is decreasing. The effects of confinement and perturbative interactions are investigated as well by readjusting the corresponding parameters.
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- 2021
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12. Strange quark matter and proto-strange stars in an equivaparticle model
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Chen, H. M., Xia, C. J., and Peng, G. X.
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Nuclear Theory ,High Energy Physics - Phenomenology - Abstract
The properties of strange quark matter and the structures of (proto-)strange stars are studied within the framework of an equivparticle model, where a new quark mass scaling and self-consistent thermodynamic treatment are adopted. Our results show that the perturbative interaction has a strong impact on the properties of strange quark matter. It is found that the energy per baryon increases with temperature, while the free energy decreases and eventually becomes negative. At fixed temperatures, the pressure at the minimum free energy per baryon is zero, suggesting that the thermodynamic self-consistency is preserved. Additionally, the sound velocity v in quark matter approaches to the extreme relativistic limit (c/sqrt(3)) as the density increases. By increasing the strengths of confinement parameter D and perturbation parameter C, the tendency for v to approach the extreme relativistic limit at high density is slightly weakened. For (proto-)strange stars, in contrast to the quark mass scalings adopted in previous publications, the new quark mass scaling can accommodate massive proto-strange stars with their maximum mass surpassing twice the solar mass at T = 50 MeV.
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- 2021
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13. Systematic synthesis of bisected N -glycans and unique recognitions by glycan-binding proteins
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Cao, Xuefeng, Wang, Shuaishuai, Gadi, Madhusudhan Reddy, Liu, Ding, Wang, Peng G, Wan, Xiu-Feng, Zhang, Jian, Chen, Xi, Pepi, Lauren E, Azadi, Parastoo, and Li, Lei
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Medicinal and Biomolecular Chemistry ,Organic Chemistry ,Chemical Sciences ,Prevention ,Chemical sciences - Abstract
Bisected N-glycans represent a unique class of protein N-glycans that play critical roles in many biological processes. Herein, we describe the systematic synthesis of these structures. A bisected N-glycan hexasaccharide was chemically assembled with two orthogonal protecting groups attached at the C2 of the branching mannose residues, followed by sequential installation of GlcNAc and LacNAc building blocks to afford two asymmetric bisecting "cores". Subsequent enzymatic modular extension of the "cores" yielded a comprehensive library of biantennary N-glycans containing the bisecting GlcNAc and presenting 6 common glycan determinants in a combinatorial fashion. These bisected N-glycans and their non-bisected counterparts were used to construct a distinctive glycan microarray to study their recognition by a wide variety of glycan-binding proteins (GBPs), including plant lectins, animal lectins, and influenza A virus hemagglutinins. Significantly, the bisecting GlcNAc could bestow (PHA-L, rDCIR2), enhance (PHA-E), or abolish (ConA, GNL, anti-CD15s antibody, etc.) N-glycan recognition of specific GBPs, and is tolerated by many others. In summary, synthesized compounds and the unique glycan microarray provide ideal standards and tools for glycoanalysis and functional glycomic studies. The microarray data provide new information regarding the fine details of N-glycan recognition by GBPs, and in turn improve their applications.
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- 2022
14. Study of the cumulative number distribution of charged particles produced in carbon-carbon interactions at 4.2 A GeV/c
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Wazir, Z, Aslam, S M, Suleymanov, M K, Waqas, M, Peng, G. X., Li-lili, Ajaz, M, and Gilani, A
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High Energy Physics - Phenomenology ,F.2.2 - Abstract
The behavior of the cumulative number distribution for the charged particles produced in the carbon carbon interactions at 4.2 A GeV/c along with particles with maximum values of the cumulative number in an event too, has been studied., Comment: we want to add some more work in this paper and then we will submit it
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- 2021
15. Analysis of kinetic freeze out temperature and transverse flow velocity in nucleus-nucleus and proton-proton collisions at same center of mass energy
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Waqas, M., Peng, G. X, Wazir, Z., and Lao, Hailing
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High Energy Physics - Phenomenology - Abstract
Transverse momentum spectra of different types of identified charged particles in central Gold-Gold (Au-Au) collisions, and inelastic (INEL) or non-single-diffrative (NSD) proton-proton (pp) collisions at the Relativistic Heavy Ion Collider (RHIC), as well as in central and peripheral Lead-Lead (Pb-Pb) collisions, and INEL or NSD pp collisions at the Large Hadron Collider (LHC) are analyzed by the blast wave model with Tsallis statistics. The model results are approximately in agreement with the experimental data measured by STAR, PHENIX and ALICE Collaborations in special transverse momentum ranges. Kinetic freeze out temperature and transverse flow velocity are extracted from the transverse momentum spectra of the particles. It is shown that kinetic freeze out temperature of the emission source depends on mass of the particles, which reveals the mass differential kinetic freeze out scenario in collisions at RHIC and LHC. Furthermore, the kinetic freeze out temperature and transverse flow velocity in central nucleus-nucleus (AA) collisions are larger than in peripheral collisions, and both of them are slightly larger in peripheral nucleus-nucleus collisions or almost equivalent to that in pp proton-proton collisions at the same center of mass energy which shows their similar thermodynamic nature.
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- 2021
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16. Decoupling of non-strange, strange and multi-strange particles from the system in Cu-Cu, Au-Au and Pb-Pb collisions at high energies
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Waqas, M., Peng, G. X., and Wazir, Z.
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High Energy Physics - Phenomenology - Abstract
Transverse momentum spectra of the non-strange, strange and multi-strange particles in central and peripheral Copper-Copper, Gold-Gold and Lead-Lead collisions are analyzed by the blast wave model with Boltzmann Gibbs statistics. The model results are approximately in agreement with the experimental data measured by BRAHMS, STAR, SPS, NA 49 and WA 97 Collaborations in special transverse momentum ranges. Bulk properties in terms of kinetic freeze out temperature, transverse flow velocity and freezeout volume are extracted from the transverse momentum spectra of the particles. Separate freeze out temperatures are observed for the non-strange, strange and multi-strange particles which maybe due to different reaction cross-sections of the interacting particles and it reveals the triple kinetic freezeout scenario in collisions at BRAHMS, STAR, SPS, NA 49 and WA 97 Collaborations, however the transverse flow velocity and freezeout volume are mass dependent and they decrease with the increasing the rest mass of the particles. Furthermore, the kinetic freezeout temperature, transverse flow velocity and kinetic freezeout volume in central nucleus-nucleus collisions are larger than those in peripheral collisions. Besides, the larger kinetic freezeout temperature and freezeout volume are observed in the most heaviest nuclei collisions, indicating their dependence on the size of interacting system
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- 2021
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17. Effects of coalescence and isospin symmetry on the freezeout of light nuclei and their anti-particles
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Waqas, M., Peng, G. X., Liu, Fu-Hu, and Wazir, Z.
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High Energy Physics - Phenomenology - Abstract
The transverse momentum spectra of light nuclei (deuteron, triton and helion) produced in various centrality intervals in Gold-Gold (Au-Au), Lead-Lead (Pb-Pb) and proton-Lead (p-Pb) collisions, as well as in inelastic (INEL) proton-proton (pp) collisions are analyzed by the blast wave model with Boltzmann Gibbs statistics. The model results are nearly in agreement with the experimental data measured by STAR and ALICE Collaborations in special transverse momentum ranges. We extracted the bulk properties in terms of kinetic freezeout temperature, transverse flow velocity and freezeout volume. It is observed that deuteron and anti-deuteron freezeout later than triton and helion as well as their anti-particles due to its smaller mass, while helion and triton, and anti-helion and anti-triton freezeout at the same time due to isospin symmetry at higher energies. It is also observed that light nuclei freezeout earlier than their anti-nuclei due to the large coalescence of nucleons for light nuclei compared to their anti-nuclei. The kinetic freezeout temperature, transverse flow velocity and kinetic freezeout volume decrease from central to peripheral collisions. Furthermore, the transverse flow velocity depends on mass of the particle which decreases with increasing the mass of the particle.
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- 2021
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18. Study of Dependence of Kinetic Freezeout Temperature on the Production Cross Section of Particles in Various Centrality Intervals in Au Au and Pb Pb Collisions at High Energies
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Waqas, M. and Peng, G. X.
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High Energy Physics - Phenomenology - Abstract
Transverse momentum spectra of pion, proton, lambda, cascade, Omega and deuteron (d) in different centrality intervals in nucleus nucleus collisions at the center of mass energy are analyzed by the blast wave model with Boltzmann Gibbs statistics. We extracted the kinetic freezeout temperature, transverse flow velocity and kinetic freezeout volume from the transverse momentum spectra of the particles. It is observed that the non-strange and strange (multi strange) particles freezeout separately due to different reaction cross-sections. While the freezeout volume and transverse flow velocity are mass dependent, they decrease with the resting mass of the particles. The present work reveals the scenario of a double kinetic freezeout in nucleus nucleus collisions. Furthermore, the kinetic freezeout temperature and freezeout volume are larger in central collisions than peripheral collisions. However, the transverse flow velocity remains almost unchanged from central to peripheral collisions.
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- 2021
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19. Study of proton, deuteron and triton at 54.4 GeV
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Waqas, M. and Peng, G. X.
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High Energy Physics - Phenomenology ,Nuclear Experiment - Abstract
Transverse momentum spectra of proton, deuteron and triton in gold-gold (Au-Au) collisions at 54.4 GeV are analyzed in different centrality bins by the blast wave model with Tsallis statistics. The model results are approximately in agreement with the experimental data measured by STAR Collaboration in special transverse momentum ranges. We extracted the kinetic freeze out temperature, transverse flow velocity and freeze out volume from the transverse momentum spectra of the particles. It is observed that the kinetic freeze out temperature is increasing from central to peripheral collisions. However the transverse flow velocity and freeze out volume decrease from central to peripheral collisions. The present work reveals the mass dependent kinetic freeze out and volume differential freeze out scenario in collisions at STAR Collaboration. In addition, the parameter q characterizes the degree of non-equilibrium of the produced system, and it increase from central to peripheral collisions and increase.
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- 2021
20. An evidence of triple kinetic freezeout scenario observed in all centrality intervals in Cu-Cu, Au-Au and Pb-Pb collisions at high energies
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Waqas, M., Peng, G. X., and Liu, Fu-Hu
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High Energy Physics - Phenomenology - Abstract
Transverse momentum spectra of $\pi^+$, $K^+$, $p$, $K^0_s$, $\Lambda$, $\Xi$ or $\bar\Xi^+$ and $\Omega$ or $\bar\Omega^+$ or $\Omega+\bar\Omega$ in Copper-Copper (Cu-Cu), Gold-Gold (Au-Au) and Lead-Lead (Pb-Pb) collisions at 200 GeV, 62.4 GeV and 2.76 TeV respectively, are analyzed in different centrality bins by the blast wave model with Tsallis statistics. The model results are approximately in agreement with the experimental data measured by BRAHMS, STAR and ALICE Collaborations in special transverse momentum ranges. Kinetic freeze out temperature, transverse flow velocity and kinetic freezeout volume are extracted from the transverse momentum spectra of the particles. It is observed that $\bar\Xi^+$ and $\Omega$ or $\bar\Omega^+$ or $\Omega+\bar\Omega$ have larger kinetic freezeout temperature followed by $K^+$, $K^0_s$ and $\Lambda$ than $\pi^+$ and $p$ due to smaller reaction cross-sections of multi-strange and strange particles than non-strange particles. The present work reveals the scenario of triple kinetic freezeout in collisions at BRAHMS, STAR and ALICE Collaborations, however the transverse flow velocity and kinetic freezeout volume are mass dependent and they decrease with the increasing rest mass of the particle. In addition, the kinetic freezeout temperature, transverse flow velocity and kinetic freezeout volume are decreasing from central to peripheral collisions while the parameter q increase from central to peripheral collisions, indicating the approach of quick equilibrium in the central collisions. Besides, the kinetic freezeout temperature and kinetic freezeout volume are observed to be larger in larger collision system which shows its dependence on the size of the interacting system, while transverse flow velocity increase with increasing energy.
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- 2021
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21. Chemoenzymatic Total Synthesis of GM3 Gangliosides Containing Different Sialic Acid Forms and Various Fatty Acyl Chains
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Yu, Hai, Gadi, Madhusudhan Reddy, Bai, Yuanyuan, Zhang, Libo, Li, Lei, Yin, Jun, Wang, Peng G, and Chen, Xi
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Medicinal and Biomolecular Chemistry ,Organic Chemistry ,Chemical Sciences ,Animals ,Ceramides ,G(M3) Ganglioside ,Gangliosides ,Glycosphingolipids ,N-Acetylneuraminic Acid ,Sphingosine ,Medicinal and biomolecular chemistry ,Organic chemistry - Abstract
Gangliosides are sialic acid-containing glycosphingolipids that have been found in the cell membranes of all vertebrates. Their important biological functions are contributed by both the glycan and the ceramide lipid components. GM3 is a major ganglioside and a precursor for many other more complex gangliosides. To obtain structurally diverse GM3 gangliosides containing various sialic acid forms and different fatty acyl chains in low cost, an improved process was developed to chemically synthesize lactosyl sphingosine from an inexpensive l-serine derivative. It was then used to obtain GM3 sphingosines from diverse modified sialic acid precursors by an efficient one-pot multienzyme sialylation system containing Pasteurella multocida sialyltransferase 3 (PmST3) with in situ generation of sugar nucleotides. A highly effective chemical acylation and facile C18-cartridge purification process was then used to install fatty acyl chains of varying lengths and different modifications. The chemoenzymatic method represents a powerful total synthetic strategy to access a library of structurally defined GM3 gangliosides to explore their functions.
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- 2021
22. Start-up flow in shallow deformable microchannels
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Martínez-Calvo, A., Sevilla, A., Peng, G. G., and Stone, H. A.
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Physics - Fluid Dynamics - Abstract
Microfluidic systems are usually fabricated with soft materials that deform due to the fluid stresses. Recent experimental and theoretical studies on the steady flow in shallow deformable microchannels have shown that the flow rate is a nonlinear function of the pressure drop due to the deformation of the upper soft wall. Here, we extend the steady theory of Christov et al. (2018) by considering the start-up flow from rest, both in pressure-controlled and in flow-rate-controlled configurations. The characteristic scales and relevant parameters governing the transient flow are first identified, followed by the development of an unsteady lubrication theory assuming that the inertia of the fluid is negligible, and that the upper wall can be modeled as an elastic plate under pure bending satisfying the Kirchhoff-Love equation. The model is governed by two non-geometrical dimensionless numbers: a compliance parameter $\beta$, which compares the characteristic displacement of the upper wall with the undeformed channel height, and a parameter $\gamma$ that compares the inertia of the solid with its flexural rigidity. In the limit of negligible solid inertia, $\gamma \to 0$, a quasi-steady model is developed, whereby the fluid pressure satisfies a nonlinear diffusion equation, with $\beta$ as the only parameter, which admits a self-similar solution under pressure-controlled conditions. This simplified lubrication description is validated with coupled three-dimensional numerical simulations of the Navier equations for the elastic solid and the Navier-Stokes equations for the fluid. The agreement is very good when the hypotheses behind the model are satisfied. Unexpectedly, we find fair agreement even in cases where the solid and liquid inertia cannot be neglected., Comment: 26 pages and 8 figures, submitted to Journal of Fluid Mechanics
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- 2019
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23. Microarray analyses of closely related glycoforms reveal different accessibilities of glycan determinants on N-glycan branches
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Li, Lei, Guan, Wanyi, Zhang, Gaolan, Wu, Zhigang, Yu, Hai, Chen, Xi, and Wang, Peng G
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Biochemistry and Cell Biology ,Biological Sciences ,Prevention ,Binding Sites ,Carbohydrate Conformation ,Microarray Analysis ,Polysaccharides ,chemoenzymatic synthesis ,glycan-binding protein ,glycoform ,microarray ,N-glycan ,Medical and Health Sciences ,Biochemistry & Molecular Biology ,Biochemistry and cell biology - Abstract
Glycans mediate a wide variety of biological roles via recognition by glycan-binding proteins (GBPs). Comprehensive knowledge of such interaction is thus fundamental to glycobiology. While the primary binding feature of GBPs can be easily uncovered by using a simple glycan microarray harboring limited numbers of glycan motifs, their fine specificities are harder to interpret. In this study, we prepared 98 closely related N-glycoforms that contain 5 common glycan epitopes which allowed the determination of the fine binding specificities of several plant lectins and anti-glycan antibodies. These N-glycoforms differ from each other at the monosaccharide level and were presented in an identical format to ensure comparability. With the analysis platform we used, it was found that most tested GBPs have preferences toward only one branch of the complex N-glycans, and their binding toward the epitope-presenting branch can be significantly affected by structures on the other branch. Fine specificities described here are valuable for a comprehensive understanding and applications of GBPs.
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- 2020
24. Autoimmunity and Frontotemporal Lobar Degeneration: From Laboratory Study to Clinical Practice
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Sun Y, Zhang L, Liu P, and Peng G
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frontotemporal lobar degeneration ,autoimmunity ,autoimmune disorders ,autoantibodies ,diagnosis ,treatment ,Geriatrics ,RC952-954.6 - Abstract
Yan Sun, Lumi Zhang, Ping Liu, Guoping Peng Department of Neurology, The First Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou, People’s Republic of ChinaCorrespondence: Guoping Peng, Department of Neurology, The First Affiliated Hospital, Zhejiang University School of Medicine, #79 Qingchun Road, Hangzhou, Zhejiang Province, 310003, People’s Republic of China, Tel +86 13588150613, Email guopingpeng@zju.edu.cnAbstract: Frontotemporal lobar degeneration (FTLD) is a group of neurodegenerative diseases with heterogenous clinical, genetic, and pathological characteristics that show similar impairment of areas in the frontal and/or temporal lobes. Prime doctors’ lack of awareness of this complex disease makes early identification and accurate intervention difficult. Autoimmune diseases and autoantibodies are manifestations of different levels of autoimmune reactions. This review presents research findings examining the relationship between autoimmunity and FTLD in terms of autoimmune diseases and autoantibodies with a focus on identifying potential diagnosis and treatment approaches. The findings indicate that the same or similar pathophysiological mechanisms may exist from clinical, genetic, and pathological perspectives. However, the existing evidence is not sufficient to extract substantial conclusions. On the basis of the current situation, we propose future research patterns using prospective studies on large populations and combined clinical and experimental research. Autoimmune reactions or, more generally, inflammatory reactions should receive increased attention from doctors and scientists of all disciplines.Keywords: frontotemporal lobar degeneration, autoimmunity, autoimmune disorders, autoantibodies, diagnosis, treatment
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- 2023
25. Nutritional Status as a Risk Factor for New-Onset Atrial Fibrillation in Acute Myocardial Infarction
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Wu L, Wang W, Gui Y, Yan Q, Peng G, Zhang X, Ye L, and Wang L
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atrial fibrillation ,acute myocardial infarction ,malnutrition ,controlling nutritional status ,geriatric nutritional risk index ,Geriatrics ,RC952-954.6 - Abstract
Liuyang Wu,1,2 Wei Wang,2 Yang Gui,2 Qiqi Yan,1,2 Guangxin Peng,2 Xin Zhang,2 Lifang Ye,2 Lihong Wang2 1The Second Clinical Medical College, Zhejiang Chinese Medical University, Hangzhou, People’s Republic of China; 2Heart Center, Department of Cardiovascular Medicine, Zhejiang Provincial People’s Hospital (Affiliated People’s Hospital, Hangzhou Medical College), Hangzhou, People’s Republic of ChinaCorrespondence: Lihong Wang, Heart Center, Department of Cardiovascular Medicine, Zhejiang Provincial People’s Hospital (Affiliated People’s Hospital, Hangzhou Medical College), No. 158 Shangtang Road, Hangzhou, Zhejiang Province, 310014, People’s Republic of China, Tel +86 136-6669-0589, Email wanglhnew@126.com; wlhhz2013@126.comPurpose: Our study aimed to identify new-onset atrial fibrillation (NOAF) risk factors in acute myocardial infarction (AMI) patients after treatment with percutaneous coronary intervention (PCI) and investigate whether their nutritional status can be a predicting factor of NOAF.Patients and Methods: We analyzed 662 AMI patients after PCI for NOAF occurrence during follow-up hospitalization and divided them into an NOAF and non-NOAF group. The patients’ nutritional status was assessed using the controlling nutritional status (CONUT) score and geriatric nutritional risk index (GNRI). The Kaplan‒Meier analysis was used to assess NOAF-free survival in varying degrees of malnutrition. Cox proportional hazards models were used to identify the risk factors for NOAF.Results: Eighty-four (12.7%) patients developed NOAF during hospitalization. There was a statistically significant difference in the occurrence of NOAF among different categories of nutritional status. The CONUT score and GNRI classifications were independent predictors of NOAF. NOAF occurrence was associated with older age, higher uric acid levels, higher N-terminal pro-B-type natriuretic peptide levels, greater left atrial size, and worse Killip class upon admission.Conclusion: The nutritional status can affect NOAF occurrence in AMI patients after PCI. The CONUT score and GNRI are ideal tools for evaluating the nutritional status of AMI patients, with an excellent predictive effect on NOAF.Keywords: atrial fibrillation, acute myocardial infarction, malnutrition, controlling nutritional status, geriatric nutritional risk index
- Published
- 2023
26. Pseudorapidity, transverse momentum and multiplicity distributions of charged particles in pp collisions at 13 TeV
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Waqas, M., Peng, G. X., Khubrani, A. M., Ajaz, M., Tabassam, U., and Yang, Pei-Pin
- Published
- 2023
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27. Microstructural Evolution and Strengthening Behavior of High-Pressure Die-Cast High-Cu Al-Si-Cu-Mg Alloy with T5 Treatment
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Peng, G. S., Fu, X. Y., Gu, Y. C., Song, G. S., Chen, S. S., Sun, Q. Q., and Hua, W. D.
- Published
- 2022
- Full Text
- View/download PDF
28. Genetically Encoding Photocaged Quinone Methide to Multitarget Protein Residues Covalently in Vivo
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Liu, Jun, Li, Shanshan, Aslam, Nayyar A, Zheng, Feng, Yang, Bing, Cheng, Rujin, Wang, Nanxi, Rozovsky, Sharon, Wang, Peng G, Wang, Qian, and Wang, Lei
- Subjects
Generic health relevance ,Cross-Linking Reagents ,Escherichia coli ,HeLa Cells ,Humans ,Light ,Phenylalanine ,Protein Engineering ,Proteins ,Hela Cells ,Chemical Sciences ,General Chemistry - Abstract
Genetically introducing covalent bonds into proteins in vivo with residue specificity is affording innovative ways for protein research and engineering, yet latent bioreactive unnatural amino acids (Uaas) genetically encoded to date react with one to few natural residues only, limiting the variety of proteins and the scope of applications amenable to this technology. Here we report the genetic encoding of (2 R)-2-amino-3-fluoro-3-(4-((2-nitrobenzyl)oxy) phenyl) propanoic acid (FnbY) in Escherichia coli and mammalian cells. Upon photoactivation, FnbY generated a reactive quinone methide (QM), which selectively reacted with nine natural amino acid residues placed in proximity in proteins directly in live cells. In addition to Cys, Lys, His, and Tyr, photoactivated FnbY also reacted with Trp, Met, Arg, Asn, and Gln, which are inaccessible with existing latent bioreactive Uaas. FnbY thus dramatically expanded the number of residues for covalent targeting in vivo. QM has longer half-life than the intermediates of conventional photo-cross-linking Uaas, and FnbY exhibited cross-linking efficiency higher than p-azido-phenylalanine. The photoactivatable and multitargeting reactivity of FnbY with selectivity toward nucleophilic residues will be valuable for addressing diverse proteins and broadening the scope of applications through exploiting covalent bonding in vivo for chemical biology, biotherapeutics, and protein engineering.
- Published
- 2019
29. Genetically Introducing Biochemically Reactive Amino Acids Dehydroalanine and Dehydrobutyrine in Proteins
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Yang, Bing, Wang, Nanxi, Schnier, Paul D, Zheng, Feng, Zhu, He, Polizzi, Nicholas F, Ittuveetil, Avinash, Saikam, Varma, DeGrado, William F, Wang, Qian, Wang, Peng G, and Wang, Lei
- Subjects
Biotechnology ,Generic health relevance ,Alanine ,Aminobutyrates ,Models ,Molecular ,Protein Engineering ,Protein Structure ,Secondary ,Chemical Sciences ,General Chemistry - Abstract
Expansion of the genetic code with unnatural amino acids (Uaas) has significantly increased the chemical space available to proteins for exploitation. Due to the inherent limitation of translational machinery and the required compatibility with biological settings, function groups introduced via Uaas to date are restricted to chemically inert, bioorthogonal, or latent bioreactive groups. To break this barrier, here we report a new strategy enabling the specific incorporation of biochemically reactive amino acids into proteins. A latent bioreactive amino acid is genetically encoded at a position proximal to the target natural amino acid; they react via proximity-enabled reactivity, selectively converting the latter into a reactive residue in situ. Using this Genetically Encoded Chemical COnversion (GECCO) strategy and harnessing the sulfur-fluoride exchange (SuFEx) reaction between fluorosulfate-l-tyrosine and serine or threonine, we site-specifically generated the reactive dehydroalanine and dehydrobutyrine into proteins. GECCO works both inter- and intramolecularly, and is compatible with various proteins. We further labeled the resultant dehydroalanine-containing protein with thiol-saccharide to generate glycoprotein mimetics. GECCO represents a new solution for selectively introducing biochemically reactive amino acids into proteins and is expected to open new avenues for exploiting chemistry in live systems for biological research and engineering.
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- 2019
30. A Retrospective Analysis of Clinical Features and Treatment of the Inflammatory Bowel Disease in China
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Shao S, Huang M, Zhang H, Peng G, Song M, Liu J, and Xu D
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inflammatory bowel disease ,crohn's disease ,ulcerative colitis. ,Pathology ,RB1-214 ,Therapeutics. Pharmacology ,RM1-950 - Abstract
Su’e Shao,1 Meifang Huang,2 Heng Zhang,1 Gangqiang Peng,1 Min Song,1 Jing Liu,1 Dan Xu1 1Department of Gastroenterology, The Central Hospital of Wuhan, Wuhan, People’s Republic of China; 2Department of Gastroenterology, Zhongnan Hospital of Wuhan University, Wuhan, People’s Republic of ChinaCorrespondence: Meifang Huang, Department of Gastroenterology, Zhongnan Hospital of Wuhan University, No. 169 East Lake Road, Wuchang District, Wuhan, Hubei, 430061, People’s Republic of China, Tel +86-13307110223, Email 1657791068@qq.com Heng Zhang, Department of Gastroenterology, the Central Hospital of Wuhan, No. 26 Shengli Street, Jiang’an District, Wuhan, Hubei, 430014, People’s Republic of China, Tel +86-18627886610, Email 653262549@qq.comPurpose: To retrospectively collect and analyze demographic information as well as symptoms, laboratory results, endoscopic and pathologic findings, and treatment of ulcerative colitis (UC) and Crohn’s disease (CD) patients in Wuhan, China.Methods: Patients who were diagnosed as inflammatory bowel disease (IBD) and hospitalized from January 2012 to December 2017 were enrolled in this study. The clinical characteristics including symptoms, laboratory results, and treatment were reviewed and analyzed.Results: Totally 821 cases were screened, and finally 430 UC patients and 286 CD patients were selected and enrolled in this study. The most common symptom in UC patients was bloody stool (90.7%) followed by diarrhea (87.7%), mucus in stool (72.1%), and abdominal pain (66.3%), which were significantly different from those of CD patients (P < 0.01). In contrast, the most common symptom in CD patients was abdominal pain (80.0%) followed by diarrhea (58.4%), bloody stool (27.6%), and fever (18.2%). Erythrocyte sedimentation, C-reactive protein, and platelets were significantly increased, while hemoglobin was decreased, in the moderately or highly active IBD. The percentage of positive perinuclear anti-neutrophil cytoplasmic antibody was significantly higher in UC patients (31.1%) than that in CD patients (4.8%, P < 0.001), while the percentage of positive anti-intestinal goblet cell antibody was significantly higher in CD patients (23.1%) than that in UC patients (14.9%, P = 0.037).Conclusion: The findings of the current study may provide evidence-based information for Chinese gastroenterologists to treat IBD more effectively in the future.Keywords: inflammatory bowel disease, Crohn’s disease, ulcerative colitis
- Published
- 2022
31. Neuroinflammation as a Potential Therapeutic Target in Alzheimer’s Disease
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Liu P, Wang Y, Sun Y, and Peng G
- Subjects
alzheimer's disease ,neuroinflammation ,disease‐modifying therapy ,anti-inflammatory treatment ,Geriatrics ,RC952-954.6 - Abstract
Ping Liu,1 Yunyun Wang,1,2 Yan Sun,1 Guoping Peng1 1Department of Neurology, the First Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou, People’s Republic of China; 2Department of Neurology, Shengzhou People’s Hospital, Shaoxing, People’s Republic of ChinaCorrespondence: Guoping Peng, Department of Neurology, the First Affiliated Hospital, Zhejiang University School of Medicine, #79 Qingchun Road, Hangzhou, Zhejiang Province, 310003, People’s Republic of China, Tel +86 13588150613, Email guopingpeng@zju.edu.cnAbstract: Although amyloid-β (Aβ) peptide accumulation is considered as a key early event in the pathogenesis of Alzheimer’s disease (AD), the precise pathophysiology of this deadly illness remains unclear and no effective remedies capable of inhibiting disease progression have been discovered. In addition to deposition of extracellular Aβ plaques and intracellular neurofibrillary tangles, neuroinflammation has been identified as the third core characteristic crucial in the pathogenesis of AD. More and more evidence from laboratory and clinical studies have suggested that anti-inflammatory treatments could defer or prevent the occurrence of AD. In this review, we will discuss multifaceted evidence of neuroinflammation presented in AD and the newly emerged anti-inflammatory targets both in pre-clinical and clinical AD.Keywords: Alzheimer’s disease, neuroinflammation, disease‐modifying therapy, anti-inflammatory treatment
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- 2022
32. Photons from the Early Stages of Relativistic Heavy Ion Collisions
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Oliva, L., Ruggieri, M., Plumari, S., Scardina, F., Peng, G. X., and Greco, V.
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Nuclear Theory ,High Energy Physics - Experiment ,High Energy Physics - Phenomenology ,Nuclear Experiment - Abstract
We present results about photons production in relativistic heavy ion collisions. The main novelty of our study is the calculation of the contribution of the early stage photons to the photon spectrum. The initial stage is modeled by an ensemble of classical gluon fields which decay to a quark-gluon plasma via the Schwinger mechanism, and the evolution of the system is studied by coupling classical field equations to relativistic kinetic theory; photons production is then computed by including the pertinent collision processes into the collision integral. We find that the contribution of the early stage photons to the direct photon spectrum is substantial for $p_T \approx 2$ GeV and higher, the exact value depending on the collision energy; therefore we identify this part of the photon spectrum as the sign of the early stage. Moreover, the amount of photons produced during the early stage is not negligible with respect to those produced by a thermalized quark-gluon plasma: we support the idea that there is no dark age in relativistic heavy ion collisions., Comment: 11 pages, 9 figures. Matches published version
- Published
- 2017
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33. Visualization Observation of Two Phase Flow in Abrasive Supply Tube for Abrasive Injection Jet
- Author
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Oguma, Y., Takase, T., Quan, H., Peng, G., Cavas-Martínez, Francisco, Series Editor, Chaari, Fakher, Series Editor, Gherardini, Francesco, Series Editor, Haddar, Mohamed, Series Editor, Ivanov, Vitalii, Series Editor, Kwon, Young W., Series Editor, Trojanowska, Justyna, Series Editor, Braza, Marianna, editor, Hoarau, Yannick, editor, Zhou, Yu, editor, Lucey, Anthony D., editor, Huang, Lixi, editor, and Stavroulakis, Georgios E., editor
- Published
- 2021
- Full Text
- View/download PDF
34. Gegen Qinlian Decoction Alleviates Experimental Colitis and Concurrent Lung Inflammation by Inhibiting the Recruitment of Inflammatory Myeloid Cells and Restoring Microbial Balance
- Author
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Li Y, Li N, Liu J, Wang T, Dong R, Ge D, and Peng G
- Subjects
gegen qinlian decoction ,ulcerative colitis ,lung and intestinal microbiota ,pulmonary inflammation ,myeloid cells ,Pathology ,RB1-214 ,Therapeutics. Pharmacology ,RM1-950 - Abstract
Yalan Li,1,* Na Li,1,* Jiajing Liu,1 Tieshan Wang,2 Ruijuan Dong,3 Dongyu Ge,3 Guiying Peng1 1Department of Immunology and Microbiology, School of Life Sciences, Beijing University of Chinese Medicine, Beijing, People’s Republic of China; 2Beijing Research Institute of Chinese Medicine, Beijing University of Chinese Medicine, Beijing, People’s Republic of China; 3Experimental Teaching Center, School of Traditional Chinese Medicine, Beijing University of Chinese Medicine, Beijing, People’s Republic of China*These authors contributed equally to this workCorrespondence: Guiying Peng, Email penggy@bucm.edu.cnObjective: Ulcerative colitis (UC) as one of the intractable diseases in gastroenterology seriously threatens human health. Respiratory pathology is a representative extraintestinal manifestation of UC affecting the quality of life of patients. Gegen Qinlian Decoction (GQD) is a classical traditional Chinese medicine prescription for UC or acute lung injury. This study was aimed to reveal the therapeutic effect of GQD on UC and its pulmonary complications and uncover its molecular mechanism mediated by myeloid cells and microbiota.Methods: Mice with DSS-induced colitis were orally administrated with GQD. Overall vital signs were assessed by body weight loss and disease activity index (DAI). Pulmonary general signs were evaluated by pulmonary pathology and lung function. The mechanism of GQD relieving UC was characterized by detecting myeloid cells (neutrophils, macrophages, inflammatory monocytes, and resident monocytes) in colonic and lung tissues, related inflammatory cytokines, as well as the microbiota in bronchoalveolar lavage fluid (BALF) and feces.Results: GQD significantly reduced weight loss, DAI scores, and lung injury but improved the lung function of colitis mice. The DSS-induced colonic and concurrent pulmonary inflammation were also alleviated by GQD, as indicated by the down-regulated expressions of inflammatory cytokines (TNF-α, IL-1β, IL-6, CCR2, and CCL2) and the suppressed recruitment of neutrophils and inflammatory monocytes. Meanwhile, GQD greatly improved intestinal microbiota imbalance by enriching Ruminococcaceae UCG-013 while decreasing Parabacteroides, [Eubacterium]_fissicatena_group, and Akkermansia in the feces of colitis mice. Expectantly, GQD also restored lung microbiota imbalance by clearing excessive Coprococcus 2 and Ochrobactrum in the BALF of colitis mice. Finally, significant correlations appeared between GQD-mediated specific bacteria and inflammatory cytokines or immune cells.Conclusion: GQD could alleviate UC by decreasing excessive inflammatory myeloid cells and cytokines, and reshaping the microbiota between the colon and lung, which contributes to clarifying the mechanism by which GQD ameliorates colitis-associated pulmonary inflammation.Keywords: Gegen Qinlian Decoction, ulcerative colitis, lung and intestinal microbiota, pulmonary inflammation, myeloid cells
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- 2022
35. Building and Breaking Bonds via a Compact S‐Propargyl‐Cysteine to Chemically Control Enzymes and Modify Proteins
- Author
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Liu, Jun, Cheng, Rujin, Wu, Haifan, Li, Shanshan, Wang, Peng G, DeGrado, William F, Rozovsky, Sharon, and Wang, Lei
- Subjects
Underpinning research ,1.1 Normal biological development and functioning ,Generic health relevance ,3C Viral Proteases ,Archaeal Proteins ,Biotin ,Catalysis ,Catalytic Domain ,Click Chemistry ,Cysteine ,Cysteine Endopeptidases ,Enterovirus ,Green Fluorescent Proteins ,Humans ,Methanosarcina ,Mutagenesis ,Site-Directed ,Palladium ,Pargyline ,Thioredoxins ,Viral Proteins ,palladium-mediated cleavage ,propargyl cysteine ,reversible protein modification ,Sonogashira coupling ,thiol-yne ,Chemical Sciences ,Organic Chemistry - Abstract
Analogous to reversible post-translational protein modifications, the ability to attach and subsequently remove modifications on proteins would be valuable for protein and biological research. Although bioorthogonal functionalities have been developed to conjugate or cleave protein modifications, they are introduced into proteins on separate residues and often with bulky side chains, limiting their use to one type of control and primarily protein surface. Here we achieved dual control on one residue by genetically encoding S-propargyl-cysteine (SprC), which has bioorthogonal alkyne and propargyl groups in a compact structure, permitting usage in protein interior in addition to surface. We demonstrated its incorporation at the dimer interface of glutathione transferase for in vivo crosslinking via thiol-yne click chemistry, and at the active site of human rhinovirus 3C protease for masking and then turning on enzyme activity via Pd-cleavage of SprC into Cys. In addition, we installed biotin onto EGFP via Sonogashira coupling of SprC and then tracelessly removed it via Pd cleavage. SprC is small in size, commercially available, nontoxic, and allows for bond building and breaking on a single residue. Genetically encoded SprC will be valuable for chemically controlling proteins with an essential Cys and for reversible protein modifications.
- Published
- 2018
36. Streamlined chemoenzymatic total synthesis of prioritized ganglioside cancer antigens
- Author
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Yu, Hai, Santra, Abhishek, Li, Yanhong, McArthur, John B, Ghosh, Tamashree, Yang, Xiaoxiao, Wang, Peng G, and Chen, Xi
- Subjects
Cancer ,Antigens ,Neoplasm ,G(M1) Ganglioside ,G(M3) Ganglioside ,Glycosylation ,Lactose ,Sphingosine ,Medicinal and Biomolecular Chemistry ,Organic Chemistry - Abstract
A highly efficient streamlined chemoenzymatic strategy for total synthesis of four prioritized ganglioside cancer antigens GD2, GD3, fucosyl GM1, and GM3 from commercially available lactose and phytosphingosine is demonstrated. Lactosyl sphingosine (LacβSph) was chemically synthesized (on a 13 g scale), subjected to sequential one-pot multienzyme (OPME) glycosylation reactions with facile C18-cartridge purification, followed by improved acylation conditions to form target gangliosides, including fucosyl GM1 which has never been synthesized before.
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- 2018
37. Genetically Encoding Fluorosulfate‑l‑tyrosine To React with Lysine, Histidine, and Tyrosine via SuFEx in Proteins in Vivo
- Author
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Wang, Nanxi, Yang, Bing, Fu, Caiyun, Zhu, He, Zheng, Feng, Kobayashi, Tomonori, Liu, Jun, Li, Shanshan, Ma, Cheng, Wang, Peng G, Wang, Qian, and Wang, Lei
- Subjects
Escherichia coli Proteins ,Fluorides ,Genetic Code ,HEK293 Cells ,HeLa Cells ,Histidine ,Humans ,Lysine ,Models ,Molecular ,Sulfur ,Sulfuric Acids ,Tyrosine ,Hela Cells ,Chemical Sciences ,General Chemistry - Abstract
Introducing new chemical reactivity into proteins in living cells would endow innovative covalent bonding ability to proteins for research and engineering in vivo. Latent bioreactive unnatural amino acids (Uaas) can be incorporated into proteins to react with target natural amino acid residues via proximity-enabled reactivity. To expand the diversity of proteins amenable to such reactivity in vivo, a chemical functionality that is biocompatible and able to react with multiple natural residues under physiological conditions is highly desirable. Here we report the genetic encoding of fluorosulfate-l-tyrosine (FSY), the first latent bioreactive Uaa that undergoes sulfur-fluoride exchange (SuFEx) on proteins in vivo. FSY was found nontoxic to Escherichia coli and mammalian cells; after being incorporated into proteins, it selectively reacted with proximal lysine, histidine, and tyrosine via SuFEx, generating covalent intraprotein bridge and interprotein cross-link of interacting proteins directly in living cells. The proximity-activatable reactivity, multitargeting ability, and excellent biocompatibility of FSY will be invaluable for covalent manipulation of proteins in vivo. Moreover, genetically encoded FSY hereby empowers general proteins with the next generation of click chemistry, SuFEx, which will afford broad utilities in chemical biology, drug discovery, and biotherapeutics.
- Published
- 2018
38. Xuanbai Chengqi Decoction Ameliorates Pulmonary Inflammation via Reshaping Gut Microbiota and Rectifying Th17/Treg Imbalance in a Murine Model of Chronic Obstructive Pulmonary Disease
- Author
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Wang Y, Li N, Li Q, Liu Z, Li Y, Kong J, Dong R, Ge D, Li J, and Peng G
- Subjects
xbcq ,copd ,intestinal microbiota ,th17/treg ,pulmonary inflammation ,Diseases of the respiratory system ,RC705-779 - Abstract
Yongan Wang,1,* Na Li,1,* Qiuyi Li,1 Zirui Liu,1 Yalan Li,1 Jingwei Kong,1 Ruijuan Dong,2 Dongyu Ge,2 Jie Li,3 Guiying Peng1 1Department of Immunology and Microbiology, School of Life Sciences, Beijing University of Chinese Medicine, Beijing, People’s Republic of China; 2Experimental Teaching Center, School of Traditional Chinese Medicine, Beijing University of Chinese Medicine, Beijing, People’s Republic of China; 3Department of Respiratory Medicine, Dongzhimen Hospital, Beijing University of Chinese Medicine, Beijing, People’s Republic of China*These authors contributed equally to this workCorrespondence: Guiying Peng; Jie Li Email penggy@bucm.edu.cn; lijie2007@126.comPurpose: Chronic obstructive pulmonary disease (COPD), a prevalent obstructive airway disease, has become the third most common cause of death globally. Xuanbai Chengqi decoction (XBCQ) is a traditional Chinese medicine prescription for the acute exacerbation of COPD. Here, we aimed to reveal the therapeutic effects of XBCQ administration and its molecular mechanisms mediated by Th17/Treg balance and gut microbiota.Methods: We determined the counts of Th17 and Treg cells in the serum of 15 COPD and 10 healthy subjects. Then, cigarette smoke extract-induced COPD mice were gavaged with low, middle, and high doses of XBCQ, respectively. Weight loss, pulmonary function and inflammation, Th17/Treg ratio, and gut microbiota were measured to evaluate the efficacy of XBCQ on COPD.Results: COPD patients had a higher Th17/Treg ratio in the serum than healthy controls, which was consistent with the results in the lung and colon of COPD mice. The middle dose of XBCQ (M-XBCQ) significantly decreased the weight loss and improved the pulmonary function (FEV0.2/FVC) in COPD mice. Moreover, M-XBCQ alleviated lung inflammation by rectifying the Th17/Treg imbalance, reducing the expressions of TNF-α, IL-1β, and MMP-9, and suppressing inflammatory cells infiltration. Meanwhile, M-XBCQ greatly improved the microbial homeostasis in COPD mice by accumulating probiotic Gordonibacter and Akkermansia but inhibiting the growth of pathogenic Streptococcus, which showed significant correlations with pulmonary injury.Conclusion: Oral M-XBCQ could alleviate COPD exacerbations by reshaping the gut microbiota and improving the Th17/Treg balance, which aids in elucidating the mechanism through which XBCQ as a therapy for COPD.Keywords: XBCQ, COPD, intestinal microbiota, Th17/Treg, pulmonary inflammation
- Published
- 2021
39. Comparison of Curative Effect of Human Umbilical Cord-Derived Mesenchymal Stem Cells and Their Small Extracellular Vesicles in Treating Osteoarthritis
- Author
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Tang S, Chen P, Zhang H, Weng H, Fang Z, Chen C, Peng G, Gao H, Hu K, Chen J, Chen L, and Chen X
- Subjects
human umbilical cord-derived mesenchymal stem cells ,small extracellular vesicles ,osteoarthritis ,proteomics ,cell-free therapy ,Medicine (General) ,R5-920 - Abstract
Shijie Tang,1– 4,* Penghong Chen,1– 4,* Haoruo Zhang,1– 4 Haiyan Weng,1– 4 Zhuoqun Fang,1– 4 Caixiang Chen,1– 4 Guohao Peng,1– 4 Hangqi Gao,1– 4 Kailun Hu,1– 4 Jinghua Chen,5 Liangwan Chen,3,6 Xiaosong Chen1– 3 1Department of Plastic Surgery, Fujian Medical University Union Hospital, Fuzhou, 350001, People’s Republic of China; 2Department of Plastic Surgery and Regenerative Medicine Institute, Fujian Medical University, Fuzhou, 350001, People’s Republic of China; 3Engineering Research Center of Tissue and Organ Regeneration, Fujian Province University, Fuzhou, 350001, People’s Republic of China; 4Oncology Institution, Fujian Medical University, Fuzhou, 350004, People’s Republic of China; 5Department of Pharmaceutical Analysis, the School of Pharmacy, Fujian Medical University, Fuzhou, 350100, People’s Republic of China; 6Department of Cardiac Surgery, Fujian Medical University Union Hospital, Fuzhou, 350001, People’s Republic of China*These authors contributed equally to this workCorrespondence: Xiaosong Chen; Liangwan Chen Email chenxiaosong74@163.com; chenliangwan@fjmu.edu.cnIntroduction: Human umbilical cord-derived mesenchymal stem cells (hUC-MSCs) and their small extracellular vesicles (hUC-MSC-sEVs) have shown attractive prospects applying in regenerative medicine. This study aimed to compare the therapeutic effects of two agents on osteoarthritis (OA) and investigate underlying mechanism using proteomics.Methods: In vitro, the proliferation and migration abilities of chondrocytes treated with hUC-MSCs or hUC-MSC-sEVs were detected by Cell Counting Kit-8 assay and scratch wound assay. In vivo, hUC-MSCs (a single dose of 5 × 105) or hUC-MSC-sEVs (30 μg/time) were injected into the knee joints of anterior cruciate ligament transection-induced OA model. Hematoxylin and eosin, Safranin O/Fast Green staining were used to observe cartilage degeneration. The levels of cartilage matrix metabolic molecules (Collagen II, MMP13 and ADAMTS5) and macrophage polarization markers (CD14, IL-1β, IL-10 and CD206) were assessed by immunohistochemistry. Finally, proteomics analysis was performed to characterize the proteinaceous contents of two agents.Results: In vitro data showed that hUC-MSC-sEVs were taken up by chondrocytes. A total of 15 μg/mL of sEVs show the greatest proliferative and migratory capacities among all groups. In the animal study, hUC-MSCs and hUC-MSC-sEVs alleviated cartilage damage. This effect was mediated via maintaining cartilage homeostasis, as was confirmed by upregulation of the COL II and downregulation of the MMP13 and ADAMTS5. Moreover, the M1 macrophage markers (CD14) were significantly reduced, while the M2 macrophage markers (CD206 and IL-10) were increased in the hUC-MSCs and hUC-MSC-sEVs relative to the untreated group. Mechanistically, we found that many proteins connected to cartilage repair were more abundant in sEVs. Notably, compared to hUC-MSCs, the upregulated proteins in sEVs were mostly involved in the regulation of immune effector process, extracellular matrix organization, PI3K-AKT signaling pathways, and Rap1 signaling pathway.Conclusion: Our study indicated that hUC-MSC-sEVs protect cartilage from damage and many cartilage repair-related proteins are probably involved in the restoration process. These data suggest the promising potential of hUC-MSC-sEVs as a therapeutic agent for OA.Keywords: human umbilical cord-derived mesenchymal stem cells, small extracellular vesicles, osteoarthritis, proteomics, cell-free therapy
- Published
- 2021
40. Investigation of the Active Ingredients and Mechanism of Hudi Enteric-Coated Capsules in DSS-Induced Ulcerative Colitis Mice Based on Network Pharmacology and Experimental Verification
- Author
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Ding P, Liu J, Li Q, Lu Q, Li J, Shi R, Shi L, Mao T, Ge D, Niu H, Peng G, and Wang Z
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hu di enteric-coated capsule ,ulcerative colitis ,network pharmacology ,il-17/jak2/stat3 pathway ,Therapeutics. Pharmacology ,RM1-950 - Abstract
Panghua Ding,1,* Jiajing Liu,2,* Qiuyi Li,2 Qiongqiong Lu,3 Junxiang Li,3 Rui Shi,3 Lei Shi,2 Tangyou Mao,3 Dongyu Ge,4 HaiJun Niu,5 Guiying Peng,2 Zhibin Wang3 1Department of Graduate School, Beijing University of Chinese Medicine, Beijing, People’s Republic of China; 2Department of Immunology and Microbiology, School of Life Sciences, Beijing University of Chinese Medicine, Beijing, People’s Republic of China; 3Department of Gastroenterology, Dong Fang Hospital, Beijing University of Chinese Medicine, Beijing, People’s Republic of China; 4Experimental Teaching Center, School of Traditional Chinese Medicine, Beijing University of Chinese Medicine, Beijing, People’s Republic of China; 5Anhui Joyfar Pharmaceutical Research Institute Co. Ltd, Hefei, Anhui, People’s Republic of China*These authors contributed equally to this workCorrespondence: Guiying Peng; Zhibin Wang Email penggy@bucm.edu.cn; wangsanger@126.comBackground: Hudi enteric-coated capsule (HDC) is a Chinese medicine prescribed to treat ulcerative colitis (UC). However, its anti-inflammatory active ingredients and mechanisms remain unknown. This study aimed to investigate the active components of HDC and explore its potential mechanisms against UC by integrating network pharmacology and experimental verification.Methods: A DSS-induced colitis murine model was established to validate the efficacy of HDC by detecting disease activity index (DAI) and histopathological changes. Network pharmacological analysis was performed to identify the active compounds and core targets of HDC for the treatment of UC. The main compounds in HDC were identified by high-performance liquid chromatography. The relative expressions of HDC’s core targets were also determined in vivo. Finally, molecular docking was applied to model the interaction between HDC and target proteins.Results: In an in vivo experiment, HDC, especially the middle-dose HDC, effectively reduced clinical symptoms of UC, including weight loss, bloody stool, and colon shortening. Besides, the severity of colitis was considerably suppressed by HDC as evidenced by reduced DAI scores. A total of 118 active compounds and 69 candidate targets from HDC closely related to UC progression were identified via network pharmacology. Enrichment analysis revealed that the key targets of HDC correlated with the expressions of PTGS2, TNF-α, IL-6, and IL-1β. Meanwhile, these cytokines were enriched in various biological processes through the IL-17/JAK2/STAT3 signaling pathway. The middle-dose HDC contributed more to ameliorating DSS-induced colitis through this signaling pathway than other dosages. Nine components binding to JAK2, STAT3, IL-17 and IL-6 were identified by molecular docking, confirming again the inhibition effects of HDC on the IL-17/JAK2/STAT3 signaling pathway.Conclusion: The HDC treatment, particularly the middle-dose, exerted an anti-UC effect in a multi-component, multi-target, and multi-mechanism manner, especially inhibiting the IL-17/JAK2/STAT3 signaling pathway to downregulate the secretion of proinflammatory cytokines.Keywords: Hudi enteric-coated capsule, ulcerative colitis, network pharmacology, IL-17/JAK2/STAT3 pathway
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- 2021
41. The influence of chiral chemical potential, parallel electric and magnetic fields on the critical temperature of QCD
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Ruggieri, M., Lu, Z. Y., and Peng, G. X.
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High Energy Physics - Phenomenology ,High Energy Physics - Lattice ,Nuclear Theory - Abstract
We study the influence of external electric, $E$, and magnetic, $B$, fields parallel to each other, and of a chiral chemical potential, $\mu_5$, on the chiral phase transition of Quantum Chromodynamics. Our theoretical framework is a Nambu-Jona-Lasinio model with a contact interaction. Within this model we compute the critical temperature of chiral symmetry restoration, $T_c$, as a function of the chiral chemical potential and field strengths. We find that the fields inhibit and $\mu_5$ enhances chiral symmetry breaking, in agreement with previous studies., Comment: 11 pages, 7 figures
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- 2016
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42. Chiral Relaxation Time at the Crossover of Quantum Chromodynamics
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Ruggieri, M., Peng, G. X., and Chernodub, M.
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High Energy Physics - Phenomenology ,High Energy Physics - Lattice ,Nuclear Theory - Abstract
We study microscopic processes responsible for chirality flips in the thermal bath of Quantum Chromodynamics at finite temperature and zero baryon chemical potential. We focus on the temperature range where the crossover from chirally broken phase to quark-gluon plasma takes place, namely $T \simeq (150, 200)$ MeV. The processes we consider are quark-quark scatterings mediated by collective excitations with the quantum number of pions and $\sigma$-meson, hence we refer to these processes simply as \sugg{to} one-pion (one-$\sigma$) exchange\sugg{s}. We use a Nambu-Jona-Lasinio model to compute equilibrium properties of the thermal bath, as well as the relevant scattering kernel to be used in the collision integral to estimate the chiral relaxation time $\tau$. We find $\tau\simeq 0.1 \div 1$ fm/c around the chiral crossover., Comment: 16 pages, 8 figures. One figure (lower panel of Fig. 6) added in comparison with V1. New version to appear on Phys. Rev. D
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- 2016
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43. Quark Matter in a Parallel Electric and Magnetic Field Background: Chiral Phase Transition and Equilibration of Chiral Density
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Ruggieri, M. and Peng, G. X.
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High Energy Physics - Phenomenology ,High Energy Physics - Lattice ,Nuclear Theory - Abstract
In this article we study spontaneous chiral symmetry breaking for quark matter in the background of static and homogeneous parallel electric field $\bm E$ and magnetic field $\bm B$. We use a Nambu-Jona-Lasinio model with a local kernel interaction to compute the relevant quantities to describe chiral symmetry breaking at finite temperature for a wide range of $E$ and $B$. We study the effect of this background on inverse catalysis of chiral symmetry breaking for $E$ and $B$ of the same order of magnitude. We then focus on the effect of equilibration of chiral density, $n_5$, produced dynamically by axial anomaly on the critical temperature. The equilibration of $n_5$, a consequence of chirality flipping processes in the thermal bath, allows for the introduction of the chiral chemical potential, $\mu_5$, which is computed self-consistently as a function of temperature and field strength by coupling the number equation to the gap equation, and solving the two within an expansion in $E/T^2$, $B/T^2$ and $\mu_5^2/T^2$. We find that even if chirality is produced and equilibrates within a relaxation time $\tau_M$, it does not change drastically the thermodynamics, with particular reference to the inverse catalysis induced by the external fields, as long as the average $\mu_5$ at equilibrium is not too large., Comment: 12 pages, 10 figures. Matches the published version
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- 2016
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44. Critical Temperature of Chiral Symmetry Restoration for Quark Matter with a Chiral Chemical Potential
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Ruggieri, M. and Peng, G. X.
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High Energy Physics - Phenomenology ,High Energy Physics - Lattice - Abstract
In this article we study restoration of chiral symmetry at finite temperature for quark matter with a chiral chemical potential, $\mu_5$, by means of a nonlocal Nambu-Jona-Lasinio model. This model allows to introduce in the simplest way possible a Euclidean momentum, $p_E$, dependent quark mass function which decays (neglecting logarithms) as $1/p_E^2$ for large $p_E$, in agreement with asymptotic behaviour expected in QCD in presence of a nonperturbative quark condensate. We focus on the critical temperature for chiral symmetry restoration in the chiral limit, $T_c$, versus $\mu_5$, as well as on the order of the phase transition. We find that $T_c$ increases with $\mu_5$, and that the transition remains of the second order for the whole range of $\mu_5$ considered., Comment: Section 3.2 added. To appear on Journal of Physics G
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- 2016
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45. Lung Features in Individuals with Biomass Smoke Exposure Characterized by CT Scan and Changes in Pulmonary Function
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Chen J, Jiang C, Zheng Y, Zhao D, Wu F, Zhao Z, Zhao J, Li Q, Li B, Peng G, Zhou Y, and Ran P
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biomass smoke ,chronic obstructive pulmonary disease ,computed tomography ,pulmonary function. ,Diseases of the respiratory system ,RC705-779 - Abstract
Jinglong Chen,1,2,* Changbin Jiang,1,* Youlan Zheng,1,* Dongxing Zhao,1,* Fan Wu,1 Zhuxiang Zhao,3 Jun Zhao,2 Qing Li,2 Bing Li,4 Gongyong Peng,1 Yumin Zhou,1 Pixin Ran1 1National Center for Respiratory Medicine, State Key Laboratory of Respiratory Disease, National Clinical Research Center for Respiratory Disease, Guangzhou Institute of Respiratory Health, The First Affiliated Hospital of Guangzhou Medical University, Guangzhou, 510120, People’s Republic of China; 2Department of Geriatrics, National Clinical Key Specialty, Guangzhou First People’s Hospital, South China University of Technology, Guangzhou, 510180, People’s Republic of China; 3The Pulmonary Medicine, Guangzhou First People’s Hospital, School of Medicine, South China University of Technology, Guangzhou, 510180, People’s Republic of China; 4GMU-GIBH Joint School of Life Sciences, Guangzhou Medical University, Guangzhou, 511436, People’s Republic of China*These authors contributed equally to this workCorrespondence: Pixin RanNational Center for Respiratory Medicine, State Key Laboratory of Respiratory Disease, National Clinical Research Center for Respiratory Disease, Guangzhou Institute of Respiratory Health, The First Affiliated Hospital of Guangzhou Medical University, Guangzhou, 510120, People’s Republic of ChinaEmail pxran@gzhmu.edu.cnBackground and Objective: To determine the effects of BSE (biomass smoke exposure) on pulmonary and non-pulmonary changes in patients with COPD compared with normal individuals.Methods: Using a cohort, we recruited 16 healthy individuals with BSE (BSE normal), 19 patients with BSE+COPD, 13 healthy individuals with cigarette smoke exposure (CSE normal), 25 patients with CSE+COPD, and 25 healthy controls. Patients with GOLD stage I and II COPD were included. Baseline data (demographic data, BSE or CSE, lung function, and CT findings) and follow-up lung function data were collected. CT parameters of emphysema, pulmonary small vessels, airway remodeling, pectoralis muscles, and erector spinae muscle were measured.Results: Individuals with BSE were mainly women (32/35, 91.43%). Compared with the CSE+COPD group, the BSE+COPD group demonstrated slower lung function decline, increased lower lung emphysema, narrower airway lumen dimensions and increased airway wall thickening in the moderate and small airways (all P< 0.05). Compared with healthy controls, the CSE normal and BSE normal groups exhibited significant reductions in pulmonary small vessel area and obvious airway remodeling in small airways (P< 0.05). Compared with the BSE normal group, the BSE+COPD group showed significantly more severe emphysema and airway remodeling, as well as reduced left pectoralis major muscle area (all P< 0.05).Conclusion: Healthy individuals with BSE had reduced pulmonary small vessel area and evidence of airway remodeling; patients with BSE and COPD showed more severe emphysema, airway remodeling, and reductions in pectoralis major muscle area.Clinical Trial Registration: ChiCTR-OO-14004264.Keywords: biomass smoke, chronic obstructive pulmonary disease, computed tomography, pulmonary function
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- 2021
46. H. pylori α1-3/4-fucosyltransferase (Hp3/4FT)-catalyzed one-pot multienzyme (OPME) synthesis of Lewis antigens and human milk fucosides.
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Yu, Hai, Li, Yanhong, Wu, Zhigang, Li, Lei, Zeng, Jie, Zhao, Chao, Wu, Yijing, Tasnima, Nova, Wang, Jing, Liu, Huaide, Gadi, Madhusudhan Reddy, Guan, Wanyi, Wang, Peng G, and Chen, Xi
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Milk ,Human ,Humans ,Helicobacter pylori ,Fucosyltransferases ,Fucose ,Carbohydrate Conformation ,Biocatalysis ,Lewis Blood Group Antigens ,Infectious Diseases ,Digestive Diseases ,Chemical Sciences ,Organic Chemistry - Abstract
Helicobacter pylori α1-3/4-fucosyltransferase (Hp3/4FT) was expressed in Escherichia coli at a level of 30 mg L-1 culture and used as a diverse catalyst in a one-pot multienzyme (OPME) system for high-yield production of l-fucose-containing carbohydrates including Lewis antigens such as Lewis a, b, and x, O-sulfated Lewis x, and sialyl Lewis x and human milk fucosides such as 3-fucosyllactose (3-FL), lacto-N-fucopentaose (LNFP) III, and lacto-N-difuco-hexaose (LNDFH) II and III. Noticeably, while difucosylation of tetrasaccharides was readily achieved using an excess amount of donor, the synthesis of LNFP III was achieved by Hp3/4FT-catalyzed selective fucosylation of the N-acetyllactosamine (LacNAc) component in lacto-N-neotetraose (LNnT).
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- 2017
47. Systematic comparison of sequencing-based spatial transcriptomic methods
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You, Y, Fu, Y, Li, L, Zhang, Z, Jia, S, Lu, S, Ren, W, Liu, Y, Xu, Y, Liu, X, Jiang, F, Peng, G, Sampath Kumar, A, Ritchie, ME, Tian, L, You, Y, Fu, Y, Li, L, Zhang, Z, Jia, S, Lu, S, Ren, W, Liu, Y, Xu, Y, Liu, X, Jiang, F, Peng, G, Sampath Kumar, A, Ritchie, ME, and Tian, L
- Abstract
Recent developments of sequencing-based spatial transcriptomics (sST) have catalyzed important advancements by facilitating transcriptome-scale spatial gene expression measurement. Despite this progress, efforts to comprehensively benchmark different platforms are currently lacking. The extant variability across technologies and datasets poses challenges in formulating standardized evaluation metrics. In this study, we established a collection of reference tissues and regions characterized by well-defined histological architectures, and used them to generate data to compare 11 sST methods. We highlighted molecular diffusion as a variable parameter across different methods and tissues, significantly affecting the effective resolutions. Furthermore, we observed that spatial transcriptomic data demonstrate unique attributes beyond merely adding a spatial axis to single-cell data, including an enhanced ability to capture patterned rare cell states along with specific markers, albeit being influenced by multiple factors including sequencing depth and resolution. Our study assists biologists in sST platform selection, and helps foster a consensus on evaluation standards and establish a framework for future benchmarking efforts that can be used as a gold standard for the development and benchmarking of computational tools for spatial transcriptomic analysis.
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- 2024
48. Community coalescence and plant host filtering determine the spread of tetracycline resistance genes from pig manure into the microbiome continuum of the soil–plant system
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Wen, Xin, Xu, J., Wang, Y., Yang, X., Peng, G., Li, S., Ma, B., Zou, Y., Liao, X., Worrich, Anja, Wu, Y., Wen, Xin, Xu, J., Wang, Y., Yang, X., Peng, G., Li, S., Ma, B., Zou, Y., Liao, X., Worrich, Anja, and Wu, Y.
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The spread of livestock manure-borne antibiotic resistance genes (ARGs) into agroecosystems through manure application poses a potential threat to human health. However, there is still a knowledge gap concerning ARG dissemination in coalescing manure, soil and plant microbiomes. Here, we examined the fate of tetracycline resistance genes (TRGs) originating from pig manure microbiomes and spread in the soil-A thaliana system and explored the effects of microbial functions on TRGs spread at different interfaces. Our results indicate that the TRGs abundances in all microbiome continuum of the soil-A. thaliana system were significantly increased with the application of a living manure microbiome, although the addition of manure with both an active and inactive microbiome caused a shift in the microbial community composition. This was attributed to the increasing relative abundances of tetA, tetL, tetM, tetO, tetW and tolC in the system. The application of living manure with DOX residues resulted in the highest relative abundance of total TRGs (3.30×10−3 copies/16S rRNA gene copies) in the rhizosphere soil samples. Community coalescence of the manure and soil microbiomes increased the abundance of Firmicutes in the soil and root microbiome, which directly explains the increase in TRG abundance observed in these interfaces. In contrast, the leaf microbiome differed markedly from that of the remaining samples, indicating strong plant host filtering effects on Firmicutes and TRGs from pig manure. The random forest machine learning model revealed microbial functions and their significant positive correlation with TRG abundance in the microbiome continuum of the system. Our findings revealed that community coalescence is the main driver of TRG spread from manure to the soil and root microbiomes. Plant host filtering effects play a crucial role in allowing certain microbial groups to occupy ecological niches in the leaves, thereby limiting the establishment of manure-borne TRG
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- 2024
49. Automatic quantitative stroke severity assessment based on Chinese clinical named entity recognition with domain-adaptive pre-trained large language model.
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Gu, Z, He, X, Yu, P, Jia, W, Yang, X, Peng, G, Hu, P, Chen, S, Chen, H, Lin, Y, Gu, Z, He, X, Yu, P, Jia, W, Yang, X, Peng, G, Hu, P, Chen, S, Chen, H, and Lin, Y
- Abstract
BACKGROUND: Stroke is a prevalent disease with a significant global impact. Effective assessment of stroke severity is vital for an accurate diagnosis, appropriate treatment, and optimal clinical outcomes. The National Institutes of Health Stroke Scale (NIHSS) is a widely used scale for quantitatively assessing stroke severity. However, the current manual scoring of NIHSS is labor-intensive, time-consuming, and sometimes unreliable. Applying artificial intelligence (AI) techniques to automate the quantitative assessment of stroke on vast amounts of electronic health records (EHRs) has attracted much interest. OBJECTIVE: This study aims to develop an automatic, quantitative stroke severity assessment framework through automating the entire NIHSS scoring process on Chinese clinical EHRs. METHODS: Our approach consists of two major parts: Chinese clinical named entity recognition (CNER) with a domain-adaptive pre-trained large language model (LLM) and automated NIHSS scoring. To build a high-performing CNER model, we first construct a stroke-specific, densely annotated dataset "Chinese Stroke Clinical Records" (CSCR) from EHRs provided by our partner hospital, based on a stroke ontology that defines semantically related entities for stroke assessment. We then pre-train a Chinese clinical LLM coined "CliRoberta" through domain-adaptive transfer learning and construct a deep learning-based CNER model that can accurately extract entities directly from Chinese EHRs. Finally, an automated, end-to-end NIHSS scoring pipeline is proposed by mapping the extracted entities to relevant NIHSS items and values, to quantitatively assess the stroke severity. RESULTS: Results obtained on a benchmark dataset CCKS2019 and our newly created CSCR dataset demonstrate the superior performance of our domain-adaptive pre-trained LLM and the CNER model, compared with the existing benchmark LLMs and CNER models. The high F1 score of 0.990 ensures the reliability of our model in accurately extra
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- 2024
50. Strange matter and strange stars in a thermodynamically self-consistent perturbation model with running coupling and running strange quark mass
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Xu, J. F., Peng, G. X., Liu, F., Hou, D. F., and Chen, L. W.
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High Energy Physics - Phenomenology ,Astrophysics - Solar and Stellar Astrophysics ,Nuclear Theory - Abstract
A quark model with running coupling and running strange quark mass, which is thermodynamically self-consistent at both high and lower densities, is presented and applied to study properties of strange quark matter and structure of compact stars. An additional term to the thermodynamic potential density is determined by meeting the fundamental differential equation of thermodynamics. It plays an important role in comparatively lower density and ignorable at extremely high density, acting as a chemical-potential dependent bag constant. In this thermodynamically enhanced perturbative QCD model, strange quark matter still has the possibility of being absolutely stable, while the pure quark star has a sharp surface with a maximum mass as large as about 2 times the solar mass and a maximum radius of about 11 kilometers., Comment: 12 pages, 10 figures
- Published
- 2015
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