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Biological invasions by alien species have substantial economic impacts and are a major driver of the ongoing decline and loss of biodiversity. Through humans, the North American pond slider (Trachemys scripta) has acquired a global distribution over the last decades and is currently listed among the worst invasive reptile species. However, in more recent times, other freshwater chelonian species have increasingly been recorded far outside their native distribution ranges as well, not only on the same continent but also on others. Despite that, the impact of alien chelonians on their respective new ecosystems remains unclear. The long-term effects and severity of impacts of alien populations mostly depend on whether they ultimately succeed in establishing themselves. This is not entirely resolved for chelonians in Central Europe. To answer that, we investigated wild populations of three non-native chelonian species from North America in Germany (Pseudemys concinna, Graptemys pseudogeographica and Trachemys scripta) applying population genetic approaches. We revealed the successful reproduction of all three species in Germany and provide the very first record for the reproduction of P. concinna and G. pseudogeographica in a temperate continental climate zone outside their native distribution. Based on our unambiguous evidence of natural reproduction, we call for dedicated studies to verify how widespread established populations are and to investigate the existing and potential impacts of all three species in a range of ecosystems along a climatic gradient. Such data is urgently needed to revise the current risk assessments of non-native chelonians, especially in Central European countries. [ABSTRACT FROM AUTHOR]

Retention forestry, which retains a portion of the original stand at the time of harvesting to maintain continuity of structural and compositional diversity, has been originally developed to mitigate the impacts of clear‐cutting. Retention of habitat trees and deadwood has since become common practice also in continuous‐cover forests of Central Europe. While the use of retention in these forests is plausible, the evidence base for its application is lacking, trade‐offs have not been quantified, it is not clear what support it receives from forest owners and other stakeholders and how it is best integrated into forest management practices. The Research Training Group ConFoBi (Conservation of Forest Biodiversity in Multiple‐use Landscapes of Central Europe) focusses on the effectiveness of retention forestry, combining ecological studies on forest biodiversity with social and economic studies of biodiversity conservation across multiple spatial scales. The aim of ConFoBi is to assess whether and how structural retention measures are appropriate for the conservation of forest biodiversity in uneven‐aged and selectively harvested continuous‐cover forests of temperate Europe. The study design is based on a pool of 135 plots (1 ha) distributed along gradients of forest connectivity and structure. The main objectives are (a) to investigate the effects of structural elements and landscape context on multiple taxa, including different trophic and functional groups, to evaluate the effectiveness of retention practices for biodiversity conservation; (b) to analyze how forest biodiversity conservation is perceived and practiced, and what costs and benefits it creates; and (c) to identify how biodiversity conservation can be effectively integrated in multi‐functional forest management. ConFoBi will quantify retention levels required across the landscape, as well as the socio‐economic prerequisites for their implementation by forest owners and managers. ConFoBi's research results will provide an evidence base for integrating biodiversity conservation into forest management in temperate forests. [ABSTRACT FROM AUTHOR]

Abstract To answer questions such as whether the existing network of protected areas is sufficient, conservation needs data covering complete taxonomic groups and large geographic areas. However, most distributional data sets are either coarse, patchy and/or based solely on expert opinion which is often hard to verify. In addition, not all regions are equally well studied. For example sub-Saharan Africa remains comparatively under-sampled for most taxa, especially Central and Western Africa. However, these regions contain many threatened species, including a high diversity of highly threatened vertebrates - amphibians. To fill this knowledge gap, we extrapolated species occurrence records (n = 15,944) on a 30 arc-seconds grid for most known West African amphibian taxa (92%), using environmental niche modelling and employing relevant environmental parameters (climate, vegetation, elevation & distance to rivers). We provide, for the first time, a fine scale distribution map of amphibian alpha diversity for the entire West African region. Already known centres of high biodiversity were confirmed (e.g. south-western Ghana and south-eastern Côte d'Ivoire) and new ones were identified (e.g. northern Liberia and the borders of Liberia with Guinea and Sierra Leone). Diversity analyses focusing on unique amphibians, i.e. threatened, endemic and evolutionary distinct species', revealed that areas of high diversity also contained many high conservation-priority species. Herewith, we offer a comprehensive baseline for identifying those areas which are important for amphibian conservation for one of the most periled regions on the continent. Those areas of high diversity were only partly in accordance with previous analyses such as the hotspot definitions, the ecoregion analyses, or analyses of other taxa, highlighting the added new value of our approach. The most outstanding areas of amphibian diversity were only partly covered by the existing network of protected areas. Thus there is an urgent need to devise a regional conservation concept to protect West African amphibians from extinction. Graphical abstract Image 1 Highlights • We ask where are important areas for conservation in West Africa? • Creation of modelled fine-grained (ca. 1 km2) distributions for 92% of West African amphibians. • Invention of a novel way of stacking grids of at extent and resolution. • Several important areas in Upper Guinea forests are revealed. • There is a need for a regional conservation concept. [ABSTRACT FROM AUTHOR]

Abstract A well-known positive correlation between niche breadth and range size exists across a number of animal and plant taxa. A relatively more simple explanation, range size being connected to differing dispersal abilities, was recently presented for passerine birds. Unfortunately, respective datasets are not easily available for other taxonomic groups. We circumvented this problem by developing a simple dispersal index, incorporating niche information (body size, litter size, preferred habitats of adults and offspring, ecotype of adults) which can be collected straightforwardly for most animal taxa. We tested this dispersal index for species which are generally considered poor dispersers, amphibians. Our results from West Africa revealed a positive correlation between the dispersal index and range size (p < 0.001). Our index can easily be transferred to and tested with other taxa. Furthermore, our results suggest one possible way of integrating information on dispersal abilities in niche modelling (distribution modelling) processes which assess the impact of climate change on future species distributions. Highlights • Correlation between niche breadth and range size known for various taxa. • In passerine birds dispersal abilities explain range sizes. • Dispersal index developed for West African amphibians. • Positive correlation of dispersal index with range size detected. • Possible application in modelling of species distributions under climate change scenarios. [ABSTRACT FROM AUTHOR]

Vipers are among the most misunderstood and persecuted animals. They occupy most terrestrial ecosystems around the world, often at high population densities. However, certain aspects of their biology (e.g., low fecundity and slow growth) have resulted in vipers being disproportionately threatened by extinction. Despite increased extinction risk, relatively little is known about viper biology, severely limiting the development and implementation of conservation initiatives. Here, we review the conservation status of vipers globally, map species richness, and develop three indices (one reactive; one proactive; one combined index emphasising irreplaceable species facing severe threats) to identify species for which conservation action should be prioritised. Moreover, we map species richness weighted by each index to identify regions for conservation prioritisation. We ranked prioritisation scores for all species for which data were available. In doing so we identify species for which valuable data are missing and that should be prioritised for research. We additionally show that 17 species, currently listed as Not Assessed or Data Deficient by the IUCN, score sufficiently high on our Threat Index to be considered as Threatened in the future. We identify multiple regions for which viper conservation action should be prioritised. These areas broadly correlate with species richness patterns, suggesting that species richness may be an effective proxy for conservation planning. Finally, we discuss the major gaps in knowledge, as well as the major threats facing vipers. [ABSTRACT FROM AUTHOR]

Vipers are among the most misunderstood and persecuted animals. They occupy most terrestrial ecosystems around the world, often at high population densities. However, certain aspects of their biology (e.g., low fecundity and slow growth) have resulted in vipers being disproportionately threatened by extinction. Despite increased extinction risk, relatively little is known about viper biology, severely limiting the development and implementation of conservation initiatives. Here, we review the conservation status of vipers globally, map species richness, and develop three indices (one reactive; one proactive; one combined index emphasising irreplaceable species facing severe threats) to identify species for which conservation action should be prioritised. Moreover, we map species richness weighted by each index to identify regions for conservation prioritisation. We ranked prioritisation scores for all species for which data were available. In doing so we identify species for which valuable data are missing and that should be prioritised for research. We additionally show that 17 species, currently listed as Not Assessed or Data Deficient by the IUCN, score sufficiently high on our Threat Index to be considered as Threatened in the future. We identify multiple regions for which viper conservation action should be prioritised. These areas broadly correlate with species richness patterns, suggesting that species richness may be an effective proxy for conservation planning. Finally, we discuss the major gaps in knowledge, as well as the major threats facing vipers. [ABSTRACT FROM AUTHOR]

Background: Correct species identification is crucial in different fields of biology, and in conservation. The endemic West African frog family Odontobatrachidae currently contains a single described species, Odontobatrachus natator. From western Guinea to western Côte d'Ivoire it inhabits forests around waterfalls or cascades. Based on more than 130 specimens from 78 localities, covering the entire distribution, we investigated the molecular diversity of these frogs. Results: Our analyses included mitochondrial and nuclear genes, with a concatenated alignment of 3527 base pairs. We detected high level of genetic differentiation with five distinct lineages or operational taxonomic units (OTUs). These OTUs were also identified by two different species delimitation approaches, Generalized Mixed Yule Coalescent (GMYC) and cluster algorithm. All OTUs occur in parapatry in the Upper Guinean forests. One OTU, assigned to the "true" Odontobatrachus natator, covers the largest distribution, ranging from the border region of western Sierra Leone-Guinea to eastern Liberia. Two OTUs are restricted to western Guinea (Fouta Djallon and foothills), while two others occur in eastern Guinea and the border region of Guinea-Liberia-Côte d'Ivoire. The OTU representing O. natator consists of two divergent subclades: one restricted to the Freetown Peninsula (Sierra Leone) and the other covering all populations further inland. Environmental niche models indicated that the restricted Freetown Peninsula population is separated by unsuitable habitat from remaining populations. Conclusion: Geographic isolation of OTUs and molecular differences comparable to species level differentiation in other frog families indicate that O. natator contains cryptic species diversity. Respective distribution patterns most probably resulted from repeated changes of forest cover (contraction and expansion) over evolutionary timescales. The survival within forest refugia that have persisted through multiple drier periods and subsequent dispersal during wetter times may best explain the observed geographic distributions of OTUs. According to the IUCN Red List range criteria each OTU should be classified as "Endangered." If the Freetown Peninsula "natator" population is recognized as a distinct species it would warrant recognition as "Critically Endangered." The identification of cryptic lineages highlights the urgent need to protect these frogs, all of which are endemic to small areas within the Upper Guinean biodiversity hotspot. [ABSTRACT FROM AUTHOR]

A putative driver of global amphibian decline is the panzootic chytrid fungus Batrachochytrium dendrobatidis (Bd). While Bd has been documented across continental Africa, its distribution in West Africa remains ambiguous. We tested 793 West African amphibians (one caecilian and 61 anuran species) for the presence of Bd. The samples originated from seven West African countries - Bénin, Burkina Faso, Côte d'Ivoire, Ghana, Guinea, Liberia, Sierra Leone - and were collected from a variety of habitats, ranging from lowland rainforests to montane forests, montane grasslands to humid and dry lowland savannahs. The species investigated comprised various life-history strategies, but we focused particularly on aquatic and riparian species. We used diagnostic PCR to screen 656 specimen swabs and histology to analyse 137 specimen toe tips. All samples tested negative for Bd, including a widespread habitat generalist Hoplobatrachus occipitalis which is intensively traded on the West African food market and thus could be a potential dispersal agent for Bd. Continental fine-grained (30 arc seconds) environmental niche models suggest that Bd should have a broad distribution across West Africa that includes most of the regions and habitats that we surveyed. The surprising apparent absence of Bd in West Africa indicates that the Dahomey Gap may have acted as a natural barrier. Herein we highlight the importance of this Bd-free region of the African continent - especially for the long-term conservation of several threatened species depending on fast flowing forest streams (Conraua alleni (“Vulnerable”) and Petropedetes natator (“Near Threatened”)) as well as the “Critically Endangered” viviparous toad endemic to the montane grasslands of Mount Nimba (Nimbaphrynoides occidentalis). [ABSTRACT FROM AUTHOR]

Aim The study was aimed at testing whether West Africa can be regarded as a distinct biogeographic region based on amphibian assemblages. If so, we asked what were the relationships of these assemblages with those in Central Africa, and whether West African amphibian distributions showed biogeographic substructure. We further investigated what events or processes may explain the observed patterns. Location Sub-Saharan Africa. Methods Presence-absence data of amphibian assemblages derived from field surveys and the literature were statistically analysed using three different multivariate techniques (consensus clustering, Monmonier analysis and nonmetric multidimensional scaling) to emphasize consistent results. Results We showed that West Africa has unique amphibian assemblages, which could be clearly demarcated from Central African assemblages, particularly by the geographic barrier of the Cross River. Further biogeographic subdivisions were detected to the west of this barrier. Habitat, mainly forest, was the best factor explaining our observed pattern. Overall, intra-regional similarity (e.g. within West Africa) was higher than intra-habitat similarity (e.g. within forest) across regions. Main conclusions Our results are compared with previous works and interpreted in the light of the known evolutionary history of West and Central Africa. The observed pattern may be explained by postulated differences in river continuity through time, with West African rivers serving as more or less constant barriers in contrast to those in Central Africa. Our results demonstrate the uniqueness of West African amphibian assemblages, highlighting the need for their conservation as many are under acute anthropogenic pressure. [ABSTRACT FROM AUTHOR]

We report on three clutches with 13, 28 and 33 eggs, respectively, obtained from three Pristimantis rosadoi couples, caught in the wet Ecuadorian Chocó region. Embryos developed from two clutches and are illustrated herein. One clutch matured and 25 froglets hatched simultaneously after 21 days. The hatching of froglets, with different amounts of yolk remaining, indicates that this was a response to perceived predation risk and thus indicates plasticity in hatching time. We also observed a distinct change from rough to smooth dorsal skin in two of the three females, after disengaging from amplexus. Our observations on reproduction and morphological change are compared to data known from other species of this genus. [ABSTRACT FROM AUTHOR]

N-mixture models usually rely on a meta-population design, in which repeated counts of individuals in multiple sampling locations are obtained over time. The time-for-space substitution (TSS) in N-mixture models allows to estimate population abundance and trend of a single population, without spatial replication. This application could be of great interest in ecological studies and conservation programs; however, its reliability has only been evaluated on a single case study. Here we perform a simulation-based evaluation of this particular application of N-mixture modelling. We generated count data, under 144 simulated scenarios, from a single population surveyed several times per year and subject to different dynamics. We compared simulated abundance and trend values with TSS estimates. TSS estimates are overall in good agreement with real abundance. Trend and abundance estimation is mainly affected by detection probability and population size. After evaluating the reliability of TSS, both against real world data, and simulations, we suggest that this particular application of N-mixture model could be reliable for monitoring abundance in single populations of rare or difficult to study species, in particular in cases of species with very narrow geographic ranges, or known only for few localities. [ABSTRACT FROM AUTHOR]

N-mixture models usually rely on a meta-population design, in which repeated counts of individuals in multiple sampling locations are obtained over time. The time-for-space substitution (TSS) in N-mixture models allows to estimate population abundance and trend of a single population, without spatial replication. This application could be of great interest in ecological studies and conservation programs; however, its reliability has only been evaluated on a single case study. Here we perform a simulation-based evaluation of this particular application of N-mixture modelling. We generated count data, under 144 simulated scenarios, from a single population surveyed several times per year and subject to different dynamics. We compared simulated abundance and trend values with TSS estimates. TSS estimates are overall in good agreement with real abundance. Trend and abundance estimation is mainly affected by detection probability and population size. After evaluating the reliability of TSS, both against real world data, and simulations, we suggest that this particular application of N-mixture model could be reliable for monitoring abundance in single populations of rare or difficult to study species, in particular in cases of species with very narrow geographic ranges, or known only for few localities. [ABSTRACT FROM AUTHOR]

Secondary sympatry amongst sister lineages is strongly associated with genetic and ecological divergence. This pattern suggests that for closely related species to coexist in secondary sympatry, they must accumulate differences in traits that mediate ecological and/or reproductive isolation. Here, we characterized inter‐ and intraspecific divergence in three giant tree frog species whose distributions stretch across West and Central Africa. Using genome‐wide single‐nucleotide polymorphism data, we demonstrated that species‐level divergence coincides temporally and geographically with a period of large‐scale forest fragmentation during the late Pliocene. Our environmental niche models further supported a dynamic history of climatic suitability and stability, and indicated that all three species occupy distinct environmental niches. We found modest morphological differentiation amongst the species with significant divergence in tympanum diameter and male advertisement call. In addition, we confirmed that two species occur in secondary sympatry in Central Africa but found no evidence of hybridization. These patterns support the hypothesis that cycles of genetic exchange and isolation across West and Central Africa have contributed to globally significant biodiversity. Furthermore, divergence in both ecology and reproductive traits appear to have played important roles in maintaining distinct lineages. At the intraspecific level, we found that climatic refugia, precipitation gradients, marine incursions, and potentially riverine barriers generated phylogeographic structure throughout the Pleistocene and into the Holocene. Further studies examining phenotypic divergence and secondary contact amongst these geographically structured populations may demonstrate how smaller scale and more recent biogeographic barriers contribute to regional diversification. see also the Perspective by Bryan C. Carstens and Shelby P. Moshier [ABSTRACT FROM AUTHOR]

Rising numbers of psychoactive tryptamine derivatives have become available on the drug market over the last decade, making these naturally occurring or synthetically manufactured compounds highly relevant for forensic analyses. One of these compounds is 5-methoxy- N,N -dimethyltryptamine (5-MeO-DMT), a constituent of the dried poison of Incilius alvarius (Colorado River toad), which has a history of ritual and/or recreational use. Still, comprehensive and validated qualitative as well as quantitative analytical data on the psychoactive components of this poison are scarce. In this study, samples of the poison of Incilius alvarius were collected from live toads in the Sonoran Desert, Arizona (USA), and analyzed with a set of complementary methods. Acetone/water (70/30, v/v) proved to be the solvent of choice for the extraction of tryptamine derivatives. Trace compounds were enriched, and overload with 5-MeO-DMT was prevented by chromatographic separation of 5-MeO-DMT prior to qualitative analyses. The method for quantification was validated. Attenuated total reflection–Fourier transform infrared spectroscopy was suitable to identify 5-MeO-DMT as the main tryptamine in samples of the poison. The combined evaluation of analytical data gained from gas chromatography–mass spectrometry (GC–MS), high-performance liquid chromatography–quadrupole time-of-flight high-resolution MS (HPLC–qToF-HRMS) and HPLC–MS-MS confirmed the presence of 5-MeO-DMT, 5-MeO- N -methyltryptamine, 5-MeO-tryptamine, 5-MeO-tryptophol, 2-(5-methoxy-1 H -indol-3-yl)-acetic-acid (5-MIAA), 5-HO- N -methyltryptamine, bufotenin, DMT and tryptophan. For the first time, 5-MeO-tryptamine and two positional isomers of hydroxylated MeO-DMT were detected in the poison of Incilius alvarius. The tryptamine present in the highest concentrations was 5-MeO-DMT (mean ± SD: 410,000 ± 30,000 μg/g). Mean concentrations of 5-MeO-tryptamine (490 ± 260 μg/g), 5-HO- N -methyltryptamine (270 ± 120 μg/g), bufotenin (2,800 ± 1,900 μg/g) and DMT (250 ± 80 μg/g) showed a relatively high variability between individual samples. The comprehensive analytical reference data of Incilius alvarius poison presented here might prove useful for forensic chemists. [ABSTRACT FROM AUTHOR]

West African torrent-frogs of the genus Odontobatrachus currently belong to a single species: Odontobatrachus natator (Boulenger, 1905). Recently, molecular results and biogeographic separation led to the recognition of five Operational Taxonomic Units (OTUs) thus identifying a species-complex. Based on these insights, morphological analyses on more than 150 adult specimens, covering the entire distribution of the family and all OTUs, were carried out. Despite strong morphological congruence, combinations of morphological characters made the differentiation of OTUs successful and allowed the recognition of five distinct species: Odontobatrachus natator, and four species new to science: Odontobatrachus arndti sp. n., O. fouta sp. n., O. smithi sp. n. and O. ziama sp. n. All species occur in parapatry: Odontobatrachus natator is known from western Guinea to eastern Liberia, O. ziama sp. n. from eastern Guinea, O. smithi sp. n. and O. fouta sp. n. from western Guinea, O. arndti sp. n. from the border triangle Guinea- Liberia-Côte d'Ivoire. In addition, for the first time the advertisement call of a West African torrent-frog (O. arndti sp. n.) is described. [ABSTRACT FROM AUTHOR]

Millions of scientific specimens are housed in museum collections, a large part of which are fluid preserved. The use of formaldehyde as fixative and subsequent storage in ethanol is especially common in ichthyology and herpetology. This type of preservation damages DNA and reduces the chance of successful retrieval of genetic data. We applied ancient DNA extraction and single stranded library construction protocols to a variety of vertebrate samples obtained from wet collections and of different ages. Our results show that almost all samples tested yielded endogenous DNA. Archival DNA extraction was successful across different tissue types as well as using small amounts of tissue. Conversion of archival DNA fragments into single‐stranded libraries resulted in usable data even for samples with initially undetectable DNA amounts. Subsequent target capture approaches for mitochondrial DNA using homemade baits on a subset of 30 samples resulted in almost complete mitochondrial genome sequences in several instances. Thus, application of ancient DNA methodology makes wet collection specimens, including type material as well as rare, old or extinct species, accessible for genetic and genomic analyses. Our results, accompanied by detailed step‐by‐step protocols, are a large step forward to open the DNA archive of museum wet collections for scientific studies. [ABSTRACT FROM AUTHOR]

The relative roles of rivers versus refugia in shaping the high levels of species diversity in tropical rainforests have been widely debated for decades. Only recently has it become possible to take an integrative approach to test predictions derived from these hypotheses using genomic sequencing and paleo‐species distribution modeling. Herein, we tested the predictions of the classic river, refuge, and river‐refuge hypotheses on diversification in the arboreal sub‐Saharan African snake genus Toxicodryas. We used dated phylogeographic inferences, population clustering analyses, demographic model selection, and paleo‐distribution modeling to conduct a phylogenomic and historical demographic analysis of this genus. Our results revealed significant population genetic structure within both Toxicodryas species, corresponding geographically to river barriers and divergence times from the mid‐Miocene to Pliocene. Our demographic analyses supported the interpretation that rivers are indications of strong barriers to gene flow among populations since their divergence. Additionally, we found no support for a major contraction of suitable habitat during the last glacial maximum, allowing us to reject both the refuge and river‐refuge hypotheses in favor of the river‐barrier hypothesis. Based on conservative interpretations of our species delimitation analyses with the Sanger and ddRAD data sets, two new cryptic species are identified from east‐central Africa. This study highlights the complexity of diversification dynamics in the African tropics and the advantages of integrative approaches to studying speciation in tropical regions. [ABSTRACT FROM AUTHOR]

The fungal pathogen Batrachochytrium dendrobatidis (Bd) is implicated in global declines of amphibian populations and has been documented in African specimens originally collected as far back as the 1930s. Numerous recent surveys focusing on regional pathogen prevalence have greatly increased the number of known occurrences of Bd in African species, but few studies have focused on continental distribution patterns. We analyzed all known positive occurrences of Bd in African amphibians to date, including newly reported data from Cameroon, the Democratic Republic of the Congo, Gabon, Namibia, and the Republic of the Congo. Records from both Namibia and the Republic of the Congo reported herein represent first positive occurrences for these countries. With this most comprehensive sampling of the African continent to date we identified patterns of Bd-positive occurrences associated with (1) location (i.e., biogeographic region, country), (2) taxonomy, (3) life history, and (4) threat of extinction. We used fine-grained (30 arc seconds) environmental niche models (ENMs) to predict the continental distribution of Bd and identify hotspots for the pathogen, including areas not previously modeled to have high suitability for the fungus, and areas of high amphibian biodiversity from which Bd has not yet been documented. Our ENMs predicted that the environmentally suitable range of Bd encompasses vast areas of high amphibian biodiversity, including the Congo Basin and the Albertine Rift. Although our ENMs indicated that West Africa is environmentally suitable for Bd, the fungus has not been reported west of the Dahomey Gap. Likewise, the ENMs also identified regions across the Congo Basin and coastal Angola that are environmentally suitable for the pathogen but from which Bd has not yet been reported, underscoring a need for Bd surveys in these regions. Although amphibian declines in Africa have not been directly attributed to chytridiomycosis, Bd has been detected in over one fifth of the most-threatened African amphibians. Given the presence of the hypervirulent Bd global panzootic lineage (BdGPL) in Africa, we believe that the threat of Bd as a novel pathogen may be underestimated and that focused research is urgently needed to identify which species are susceptible to Bd-driven declines. [ABSTRACT FROM AUTHOR]

Retention forestry implies that biological legacies like dead and living trees are deliberately selected and retained beyond harvesting cycles to benefit biodiversity and ecosystem functioning. This model has been applied for several decades in even-aged, clearcutting (CC) systems but less so in uneven-aged, continuous-cover forestry (CCF). We provide an overview of retention in CCF in temperate regions of Europe, currently largely focused on habitat trees and dead wood. The relevance of current meta-analyses and many other studies on retention in CC is limited since they emphasize larger patches in open surroundings. Therefore, we reflect here on the ecological foundations and socio-economic frameworks of retention approaches in CCF, and highlight several areas with development potential for the future. Conclusions from this perspective paper, based on both research and current practice on several continents, although highlighting Europe, are also relevant to other temperate regions of the world using continuous-cover forest management approaches. [ABSTRACT FROM AUTHOR]

Aim: Species with wide distributions spanning the African Guinean and Congolian rain forests are often composed of genetically distinct populations or cryptic species with geographic distributions that mirror the locations of the remaining forest habitats. We used phylogeographic inference and demographic model testing to evaluate diversification models in a widespread rain forest species, the African foam‐nest treefrog Chiromantis rufescens. Location: Guinean and Congolian rain forests, West and Central Africa. Taxon: Chiromantis rufescens. Methods: We collected mitochondrial DNA (mtDNA) and single‐nucleotide polymorphism (SNP) data for 130 samples of C. rufescens. After estimating population structure and inferring species trees using coalescent methods, we tested demographic models to evaluate alternative population divergence histories that varied with respect to gene flow, population size change and periods of isolation and secondary contact. Species distribution models were used to identify the regions of climatic stability that could have served as forest refugia since the last interglacial. Results: Population structure within C. rufescens resembles the major biogeographic regions of the Guinean and Congolian forests. Coalescent‐based phylogenetic analyses provide strong support for an early divergence between the western Upper Guinean forest and the remaining populations. Demographic inferences support diversification models with gene flow and population size changes even in cases where contemporary populations are currently allopatric, which provides support for forest refugia and barrier models. Species distribution models suggest that forest refugia were available for each of the populations throughout the Pleistocene. Main conclusions: Considering historical demography is essential for understanding population diversification, especially in complex landscapes such as those found in the Guineo–Congolian forest. Population demographic inferences help connect the patterns of genetic variation to diversification model predictions. The diversification history of C. rufescens was shaped by a variety of processes, including vicariance from river barriers, forest fragmentation and adaptive evolution along environmental gradients. [ABSTRACT FROM AUTHOR]

Atractaspidines are poorly studied, fossorial snakes that are found throughout Africa and western Asia, including the Middle East. We employed concatenated gene-tree analyses and divergence dating approaches to investigate evolutionary relationships and biogeographic patterns of atractaspidines with a multi-locus data set consisting of three mitochondrial (16S, cyt b, and ND4) and two nuclear genes (c-mos and RAG1). We sampled 91 individuals from both atractaspidine genera (Atractaspis and Homoroselaps). Additionally, we used ancestral-state reconstructions to investigate fang and diet evolution within Atractaspidinae and its sister lineage (Aparallactinae). Our results indicated that current classification of atractaspidines underestimates diversity within the group. Diversification occurred predominantly between the Miocene and Pliocene. Ancestral-state reconstructions suggest that snake dentition in these taxa might be highly plastic within relatively short periods of time to facilitate adaptations to dynamic foraging and life-history strategies. [ABSTRACT FROM AUTHOR]

Members of the snake subfamily Aparallactinae occur in various habitats throughout sub-Saharan Africa. The monophyly of aparallactine snakes is well established, but relationships within the subfamily are poorly known. We sampled 158 individuals from six of eight aparallactine genera in sub-Saharan Africa. We employed concatenated gene-tree analyses, divergence dating approaches, and ancestral-area reconstructions to infer phylogenies and biogeographic patterns with a multi-locus data set consisting of three mitochondrial ( 16S , cyt b, and ND4 ) and two nuclear genes ( c-mos and RAG1 ). As a result, we uncover several cryptic lineages and elevate a lineage of Polemon to full species status. Diversification occurred predominantly during the Miocene, with a few speciation events occurring subsequently in the Pliocene and Pleistocene. Biogeographic analyses suggested that the Zambezian biogeographic region, comprising grasslands and woodlands, facilitated radiations, vicariance, and dispersal for many aparallactines. Moreover, the geographic distributions of many forest species were fragmented during xeric and cooler conditions, which likely led to diversification events. Biogeographic patterns of aparallactine snakes are consistent with previous studies of other sub-Saharan herpetofauna. [ABSTRACT FROM AUTHOR]

Frogs in the genus Amnirana (family Ranidae) are widely distributed across sub-Saharan Africa and present a model system for exploring the relationship between diversification and geography across the continent. Using multiple loci from the mitochondrial ( 16S ) and nuclear genomes ( DISP2 , FICD , KIAA2013 , REV3L ), we generated a strongly supported species-level phylogeny that provides insights into the continental biogeography of African species of Amnirana , which form a monophyletic group within the genus. Species delimitation analyses suggest that there may be as many as seven additional species of Amnirana in Africa. The biogeographic history of Amnirana is marked by several dispersal and vicariance events, including dispersal from the Lower Guinean Forest into the Congo Basin. In addition, phylogeographic patterns within two widespread species, A. albolabris and A. galamensis, reveal undescribed cryptic diversity. Populations assigned to A. albolabris in western Africa are more closely related to A. fonensis and require recognition as a distinct species. Our analyses reveal that the Lower and Upper Guinean Forest regions served as important centers of interspecific and intraspecific diversifications for Amnirana . [ABSTRACT FROM AUTHOR]

Global change effects on biodiversity and human wellbeing call for improved long-term environmental data as a basis for science, policy and decision making, including increased interoperability, multifunctionality, and harmonization. Based on the example of two global initiatives, the International Long-Term Ecological Research (ILTER) network and the Group on Earth Observations Biodiversity Observation Network (GEO BON), we propose merging the frameworks behind these initiatives, namely ecosystem integrity and essential biodiversity variables, to serve as an improved guideline for future site-based long-term research and monitoring in terrestrial, freshwater and coastal ecosystems. We derive a list of specific recommendations of what and how to measure at a monitoring site and call for an integration of sites into co-located site networks across individual monitoring initiatives, and centered on ecosystems. This facilitates the generation of linked comprehensive ecosystem monitoring data, supports synergies in the use of costly infrastructures, fosters cross-initiative research and provides a template for collaboration beyond the ILTER and GEO BON communities. [ABSTRACT FROM AUTHOR]

How evolutionary novelties evolve is a major question in evolutionary biology. It is widely accepted that changes in environmental conditions shift the position of selective optima, and advancements in phylogenetic comparative approaches allow the rigorous testing of such correlated transitions. A longstanding question in vertebrate biology has been the evolution of terrestrial life histories in amphibians and here, by investigating African bufonids, we test whether terrestrial modes of reproduction have evolved as adaptations to particular abiotic habitat parameters. We reconstruct and date the most complete species-level molecular phylogeny and estimate ancestral states for reproductive modes. By correlating continuous habitat measurements from remote sensing data and locality records with life-history transitions, we discover that terrestrial modes of reproduction, including viviparity evolved multiple times in this group, most often directly from fully aquatic modes. Terrestrial modes of reproduction are strongly correlated with steep terrain and low availability of accumulated water sources. Evolutionary transitions to terrestrial modes of reproduction occurred synchronously with or after transitions in habitat, and we, therefore, interpret terrestrial breeding as an adaptation to these abiotic conditions, rather than an exaptation that facilitated the colonization of montane habitats. [ABSTRACT FROM AUTHOR]

The Mascarene ridged frog, Ptychadena mascareniensis , is a species complex that includes numerous lineages occurring mostly in humid savannas and open forests of mainland Africa, Madagascar, the Seychelles, and the Mascarene Islands. Sampling across this broad distribution presents an opportunity to examine the genetic differentiation within this complex and to investigate how the evolution of bioclimatic niches may have shaped current biogeographic patterns. Using model-based phylogenetic methods and molecular-clock dating, we constructed a time-calibrated molecular phylogenetic hypothesis for the group based on mitochondrial 16S rRNA and cytochrome b ( cytb ) genes and the nuclear RAG1 gene from 173 individuals. Haplotype networks were reconstructed and species boundaries were investigated using three species-delimitation approaches: Bayesian generalized mixed Yule-coalescent model (bGMYC), the Poisson Tree Process model (PTP) and a cluster algorithm (SpeciesIdentifier). Estimates of similarity in bioclimatic niche were calculated from species-distribution models ( maxent ) and multivariate statistics (Principal Component Analysis, Discriminant Function Analysis). Ancestral-area reconstructions were performed on the phylogeny using probabilistic approaches implemented in BioGeoBEARS. We detected high levels of genetic differentiation yielding ten distinct lineages or operational taxonomic units, and Central Africa was found to be a diversity hotspot for these frogs. Most speciation events took place throughout the Miocene, including “out-of-Africa” overseas dispersal events to Madagascar in the East and to São Tomé in the West. Bioclimatic niche was remarkably well conserved, with most species tolerating similar temperature and rainfall conditions common to the Central African region. The P. mascareniensis complex provides insights into how bioclimatic niche shaped the current biogeographic patterns with niche conservatism being exhibited by the Central African radiation and niche divergence shaping populations in West Africa and Madagascar. Central Africa, including the Albertine Rift region, has been an important center of diversification for this species complex. [ABSTRACT FROM AUTHOR]

Highlights: [•] First phylogeny of African torrent frogs throughout the distribution range. [•] Description of a new genus (Odontobatrachus) for West African taxa. [•] Resurrection of the genus Arthroleptides for East African taxa. [•] Recognition of a hitherto overseen diversity in all biogeographic realms. [Copyright &y& Elsevier]