1. Novel High Affinity Sigma-1 Receptor Ligands from Minimal Ensemble Docking-Based Virtual Screening.
- Author
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Dvorácskó S, Lázár L, Fülöp F, Palkó M, Zalán Z, Penke B, Fülöp L, Tömböly C, and Bogár F
- Subjects
- Binding Sites, Hydrophobic and Hydrophilic Interactions, Isoxazoles analysis, Isoxazoles pharmacology, Ligands, Molecular Structure, Pentazocine analysis, Pentazocine pharmacology, Protein Binding, Pyridines analysis, Pyridines pharmacology, Radioligand Assay methods, Receptors, sigma agonists, Receptors, sigma analysis, Receptors, sigma antagonists & inhibitors, Sigma-1 Receptor, Isoxazoles chemistry, Molecular Docking Simulation methods, Pentazocine chemistry, Pyridines chemistry, Receptors, sigma chemistry
- Abstract
Sigma-1 receptor (S1R) is an intracellular, multi-functional, ligand operated protein that also acts as a chaperone. It is considered as a pluripotent drug target in several pathologies. The publication of agonist and antagonist bound receptor structures has paved the way for receptor-based in silico drug design. However, recent studies on this subject payed no attention to the structural differences of agonist and antagonist binding. In this work, we have developed a new ensemble docking-based virtual screening protocol utilizing both agonist and antagonist bound S1R structures. This protocol was used to screen our in-house compound library. The S1R binding affinities of the 40 highest ranked compounds were measured in competitive radioligand binding assays and the sigma-2 receptor (S2R) affinities of the best S1R binders were also determined. This way three novel high affinity S1R ligands were identified and one of them exhibited a notable S1R/S2R selectivity.
- Published
- 2021
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