1. Protocol for mapping cell lineage and cell-type identity of clonally-related cells in situ using MADM-CloneSeq
- Author
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Giselle Cheung, Florian M. Pauler, Peter Koppensteiner, and Simon Hippenmeyer
- Subjects
Neuroscience ,RNA-seq ,Stem Cells ,Science (General) ,Q1-390 - Abstract
Summary: The lineage relationship of clonally-related cells offers important insights into the ontogeny and cytoarchitecture of the brain in health and disease. Here, we provide a protocol to concurrently assess cell lineage relationship and cell-type identity among clonally-related cells in situ. We first describe the preparation and screening of acute brain slices containing clonally-related cells labeled using mosaic analysis with double markers (MADM). We then outline steps to collect RNA from individual cells for downstream applications and cell-type identification using RNA sequencing.For complete details on the use and execution of this protocol, please refer to Cheung et al.1 : Publisher’s note: Undertaking any experimental protocol requires adherence to local institutional guidelines for laboratory safety and ethics.
- Published
- 2024
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