8 results on '"Petra Stockinger"'
Search Results
2. AutoScanJ: A Suite of ImageJ Scripts for Intelligent Microscopy
- Author
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Anna Godo, Sébastien Tosi, Petra Stockinger, Elena Rebollo, Anna Lladó, Julien Colombelli, and Lídia Bardia
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0303 health sciences ,Microscope ,Computer science ,business.industry ,Suite ,Real-time computing ,Ranging ,General Medicine ,computer.software_genre ,law.invention ,03 medical and health sciences ,0302 clinical medicine ,Software ,Workflow ,Scripting language ,law ,Transient (computer programming) ,Macro ,business ,computer ,030217 neurology & neurosurgery ,030304 developmental biology - Abstract
We developed AutoscanJ, a suite of ImageJ scripts enabling one to image targets of interest by automatically driving a motorized microscope at the corresponding locations. For live samples, our software can sequentially detect biological events from their onset and further image them at high resolution, an action that would be impractical by user operation. For fixed samples, the software can dramatically reduce the amount of data acquired and the acquisition duration in situations where statistically few targets of interest are observed per field of view. AutoScanJ is compatible with motorized fluorescence microscopes controlled by Leica LAS AF/X or Micro-Manager. The software is straightforward to set up and new custom image analysis workflows to detect targets of interest can be simply implemented and shared with minimal efforts as independent ImageJ macro functions. We illustrate five different application scenarios with the system ranging from samples fixed on micropatterned surfaces to live cells undergoing several rounds of division. The target detection functions for these applications are provided and can be used as a starting point and a source of inspiration for new applications. Overall, AutoScanJ helps to optimize microscope usage by autonomous operation, and it opens up new experimental avenues by enabling the real-time detection and selective imaging of transient events in live microscopy. Code availability and documentation: https://github.com/SebastienTs/AutoScanJ
- Published
- 2021
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3. Tissue Morphogenesis: Take a Step Back and Relax!
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Jérôme Solon and Petra Stockinger
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0301 basic medicine ,Morphogenesis ,Actomyosin ,Biology ,Cell junction ,General Biochemistry, Genetics and Molecular Biology ,Epithelium ,Cell biology ,Contractility ,03 medical and health sciences ,030104 developmental biology ,medicine.anatomical_structure ,Intercellular Junctions ,medicine ,Molecular mechanism ,Relaxation (physics) ,medicine.symptom ,General Agricultural and Biological Sciences ,Muscle contraction ,Muscle Contraction - Abstract
A recent study identified a molecular mechanism responsible for the relaxation of epithelia upon stretch. This relaxation is due to the activity of cytohesins, which locally inhibit actomyosin contractility at cellular junctions.
- Published
- 2017
4. Neural Circuitry that Governs Drosophila Male Courtship Behavior
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Duda Kvitsiani, Barry J. Dickson, Petra Stockinger, Laszlo Tirian, and Shay Rotkopf
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Nervous system ,Courtship display ,Biochemistry, Genetics and Molecular Biology(all) ,Locus (genetics) ,Anatomy ,Biology ,General Biochemistry, Genetics and Molecular Biology ,Behavioral response ,medicine.anatomical_structure ,Sexual behavior ,Sex pheromone ,medicine ,Biological neural network ,fruitless ,Neuroscience - Abstract
Summary Male-specific fruitless ( fru ) products (Fru M ) are both necessary and sufficient to "hardwire" the potential for male courtship behavior into the Drosophila nervous system. Fru M is expressed in ∼2% of neurons in the male nervous system, but not in the female. We have targeted the insertion of GAL4 into the fru locus, allowing us to visualize and manipulate the Fru M -expressing neurons in the male as well as their counterparts in the female. We present evidence that these neurons are directly and specifically involved in male courtship behavior and that at least some of them are interconnected in a circuit. This circuit includes olfactory neurons required for the behavioral response to sex pheromones. Anatomical differences in this circuit that might account for the dramatic differences in male and female sexual behavior are not apparent.
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- 2005
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5. Defective neuroepithelial cell cohesion affects tangential branchiomotor neuron migration in the zebrafish neural tube
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Carl-Philipp Heisenberg, Jean-Léon Maître, and Petra Stockinger
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Neural Tube ,Rhombomere ,Neuroepithelial Cells ,CDH2 ,Animals, Genetically Modified ,Cell Fusion ,Mice ,Cell Movement ,Cohesion (geology) ,medicine ,Morphogenesis ,Animals ,Cell adhesion ,Molecular Biology ,Zebrafish ,Motor Neurons ,biology ,Cadherin ,Neural tube ,Anatomy ,Zebrafish Proteins ,biology.organism_classification ,Cadherins ,Cell biology ,Neuroepithelial cell ,medicine.anatomical_structure ,Developmental Biology - Abstract
Facial branchiomotor neurons (FBMNs) in zebrafish and mouse embryonic hindbrain undergo a characteristic tangential migration from rhombomere (r) 4, where they are born, to r6/7. Cohesion among neuroepithelial cells (NCs) has been suggested to function in FBMN migration by inhibiting FBMNs positioned in the basal neuroepithelium such that they move apically between NCs towards the midline of the neuroepithelium instead of tangentially along the basal side of the neuroepithelium towards r6/7. However, direct experimental evaluation of this hypothesis is still lacking. Here, we have used a combination of biophysical cell adhesion measurements and high-resolution time-lapse microscopy to determine the role of NC cohesion in FBMN migration. We show that reducing NC cohesion by interfering with Cadherin 2 (Cdh2) activity results in FBMNs positioned at the basal side of the neuroepithelium moving apically towards the neural tube midline instead of tangentially towards r6/7. In embryos with strongly reduced NC cohesion, ectopic apical FBMN movement frequently results in fusion of the bilateral FBMN clusters over the apical midline of the neural tube. By contrast, reducing cohesion among FBMNs by interfering with Contactin 2 (Cntn2) expression in these cells has little effect on apical FBMN movement, but reduces the fusion of the bilateral FBMN clusters in embryos with strongly diminished NC cohesion. These data provide direct experimental evidence that NC cohesion functions in tangential FBMN migration by restricting their apical movement.
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- 2011
6. Analysis of Branchiomotor Neuron Migration in the Zebrafish
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Carl-Philipp Heisenberg and Petra Stockinger
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Neuron migration ,Biology ,biology.organism_classification ,Neuroscience ,Zebrafish - Published
- 2010
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7. Identification of regulators of germ layer morphogenesis using proteomics in zebrafish
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Carl-Philipp Heisenberg, Petra Stockinger, Irinka Castanon, Lara Carvalho, Vinzenz Link, and Andrej Shevchenko
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Proteomics ,Mesoderm ,animal structures ,Morphogenesis ,Ectoderm ,Germ layer ,Biology ,Mass Spectrometry ,medicine ,Animals ,Zebrafish ,Gene Expression Profiling ,Gene Expression Regulation, Developmental ,Cell Biology ,Genomics ,Oligonucleotides, Antisense ,Zebrafish Proteins ,biology.organism_classification ,Microarray Analysis ,Cell biology ,Gastrulation ,Cytoskeletal Proteins ,medicine.anatomical_structure ,embryonic structures ,Endoderm ,Germ Layers - Abstract
During vertebrate gastrulation, a well-orchestrated series of morphogenetic changes leads to the formation of the three germ layers: the ectoderm, mesoderm and endoderm. The analysis of gene expression patterns during gastrulation has been central to the identification of genes involved in germ layer formation. However, many proteins are regulated on a translational or post-translational level and are thus undetectable by gene expression analysis. Therefore, we developed a 2D-gel-based comparative proteomic approach to target proteins involved in germ layer morphogenesis during zebrafish gastrulation. Proteomes of ectodermal and mesendodermal progenitor cells were compared and 35 significantly regulated proteins were identified by mass spectrometry, including several proteins with predicted functions in cytoskeletal organization. A comparison of our proteomic results with data obtained in an accompanying microarray-based gene expression analysis revealed no significant overlap, confirming the complementary nature of proteomics and transcriptomics. The regulation of ezrin2, which was identified based on a reduction in spot intensity in mesendodermal cells, was independently validated. Furthermore, we show that ezrin2 is activated by phosphorylation in mesendodermal cells and is required for proper germ layer morphogenesis. We demonstrate the feasibility of proteomics in zebrafish, concluding that proteomics is a valuable tool for analysis of early development.
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- 2006
8. Completion of the epithelial to mesenchymal transition in zebrafish mesoderm requires Spadetail
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David Kimelman, Richard H. Row, Jean-Léon Maître, Carl-Philipp Heisenberg, Petra Stockinger, and Benjamin L. Martin
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Mesoderm ,Involution ,Embryo, Nonmammalian ,Epithelial-Mesenchymal Transition ,Myosin ,Germ layer ,Article ,03 medical and health sciences ,0302 clinical medicine ,Cell Movement ,medicine ,Cell Adhesion ,spadetail ,Animals ,Epithelial–mesenchymal transition ,Zebrafish ,Molecular Biology ,In Situ Hybridization ,030304 developmental biology ,Genetics ,0303 health sciences ,Bleb ,biology ,Gastrulation ,Gene Expression Regulation, Developmental ,Cell Biology ,Zebrafish Proteins ,biology.organism_classification ,Embryonic stem cell ,Immunohistochemistry ,Cell biology ,Hypoblast ,medicine.anatomical_structure ,Epiblast ,Mutation ,embryonic structures ,Adhesion ,Cadherin ,T-Box Domain Proteins ,030217 neurology & neurosurgery ,Developmental Biology - Abstract
The process of gastrulation is highly conserved across vertebrates on both the genetic and morphological levels, despite great variety in embryonic shape and speed of development. This mechanism spatially separates the germ layers and establishes the organizational foundation for future development. Mesodermal identity is specified in a superficial layer of cells, the epiblast, where cells maintain an epithelioid morphology. These cells involute to join the deeper hypoblast layer where they adopt a migratory, mesenchymal morphology. Expression of a cascade of related transcription factors orchestrates the parallel genetic transition from primitive to mature mesoderm. Although the early and late stages of this process are increasingly well understood, the transition between them has remained largely mysterious. We present here the first high resolution in vivo observations of the blebby transitional morphology of involuting mesodermal cells in a vertebrate embryo. We further demonstrate that the zebrafish spadetail mutation creates a reversible block in the maturation program, stalling cells in the transition state. This mutation creates an ideal system for dissecting the specific properties of cells undergoing the morphological transition of maturing mesoderm, as we demonstrate with a direct measurement of cell–cell adhesion.
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