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549 results on '"Phylogenetic networks"'

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1. Bounding the Softwired Parsimony Score of a Phylogenetic Network.

2. Dimensions of Level-1 Group-Based Phylogenetic Networks.

3. Benefits and Limits of Phasing Alleles for Network Inference of Allopolyploid Complexes.

4. Homoplastic versus xenoplastic evolution: exploring the emergence of key intrinsic and extrinsic traits in the montane genus Soldanella (Primulaceae).

5. A Fixed-Parameter Tractable Algorithm for Finding Agreement Cherry-Reduced Subnetworks in Level-1 Orchard Networks.

6. Botany and geogenomics: Constraining geological hypotheses in the neotropics with large‐scale genetic data derived from plants.

7. Exploring spaces of semi-directed level-1 networks.

8. Finding Agreement Cherry-Reduced Subnetworks in Level-1 Networks

9. SiPhyNetwork: An R package for simulating phylogenetic networks

10. Lpnet: Reconstructing phylogenetic networks from distances using integer linear programming

11. All galls are divided into three or more parts: recursive enumeration of labeled histories for galled trees

12. NeighborNet: improved algorithms and implementation

13. SiPhyNetwork: An R package for simulating phylogenetic networks.

14. Likelihood-Based Tests of Species Tree Hypotheses.

15. Lpnet: Reconstructing phylogenetic networks from distances using integer linear programming.

16. Phylogenetic Network Dissimilarity Measures that Take Branch Lengths into Account

17. Treewidth-based algorithms for the small parsimony problem on networks

18. All galls are divided into three or more parts: recursive enumeration of labeled histories for galled trees.

19. From modular decomposition trees to level-1 networks: Pseudo-cographs, polar-cats and prime polar-cats.

20. New taxonomic framework for Arthrodermataceae: a comprehensive analysis based on their phylogenetic reconstruction, divergence time estimation, phylogenetic split network, and phylogeography.

21. A consequential one-night stand: Episodic historical hybridization leads to mitochondrial takeover in sympatric desert ant-eating spiders.

22. Evolutionary relationships and fine-scale geographic structuring in the temperate percichthyid genus Gadopsis (blackfishes) to support fisheries and conservation management.

23. Counting phylogenetic networks with few reticulation vertices: A second approach.

24. A branching process approach to level‐k phylogenetic networks.

25. Treewidth-based algorithms for the small parsimony problem on networks.

26. Orchard Networks are Trees with Additional Horizontal Arcs.

27. Complex Hybridization in a Clade of Polytypic Salamanders (Plethodontidae: Desmognathus) Uncovered by Estimating Higher-Level Phylogenetic Networks.

28. Combining Networks Using Cherry Picking Sequences

29. New FPT Algorithms for Finding the Temporal Hybridization Number for Sets of Phylogenetic Trees.

30. Combinatorial and stochastic properties of ranked tree‐child networks.

31. A Practical Fixed-Parameter Algorithm for Constructing Tree-Child Networks from Multiple Binary Trees.

32. Genomic patterns and the evolutionary origin of an invasive fungal pathogen (Hymenoscyphus fraxineus) in Europe.

33. Advances in Computational Methods for Phylogenetic Networks in the Presence of Hybridization

34. Synthesis of Nuclear and Chloroplast Data Combined With Network Analyses Supports the Polyploid Origin of the Apple Tribe and the Hybrid Origin of the Maleae—Gillenieae Clade.

35. Level-2 networks from shortest and longest distances.

36. Revisiting Shao and Sokal’s B2 index of phylogenetic balance.

37. Maximum Covering Subtrees for Phylogenetic Networks.

38. Predominance of genomically defined A lineage of HPV16 over D lineage in Indian patients from eastern India with squamous cell carcinoma of the cervix in association with distinct oncogenic phenotypes

39. Synthesis of Nuclear and Chloroplast Data Combined With Network Analyses Supports the Polyploid Origin of the Apple Tribe and the Hybrid Origin of the Maleae—Gillenieae Clade

40. Understanding Species Boundaries that Arise from Complex Histories: Gene Flow Across the Speciation Continuum in the Spotted Whiptail Lizards.

41. Microbial Phylogenetic Context Using Phylogenetic Outlines.

42. A phylogenomic perspective on gene tree conflict and character evolution in Caprifoliaceae using target enrichment data, with Zabelioideae recognized as a new subfamily.

43. Distinguishing level-1 phylogenetic networks on the basis of data generated by Markov processes.

44. Circular Networks from Distorted Metrics

46. On cherry-picking and network containment.

47. Charrs of the genus Salvelinus (Salmonidae): hybridization, phylogeny and evolution.

48. Unraveling Reticulate Evolution in Opuntia (Cactaceae) From Southern Mexico

49. A Bayesian approach to phylogenetic networks

50. Unraveling Reticulate Evolution in Opuntia (Cactaceae) From Southern Mexico.

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