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Abstract Background Infectious diseases are emerging across temperate regions of the world, and, for some, links have been made between landscapes and emergence dynamics. For tick-borne diseases, public parks may be important exposure sites for people living in urbanized areas of North America and Europe. In most cases, we know more about the ecological processes that determine the hazard posed by ticks as disease vectors than we do about how human population exposure varies in urban natural parks. Methods In this study, infrared counters were used to monitor visitor use of a public natural park in southern Quebec, Canada. A risk index representing the probability of encounters between humans and infected vectors was constructed. This was done by combining the intensity of visitor trail use and the density of infected nymphs obtained from field surveillance. Patterns of risk were examined using spatial cluster analysis. Digital forest data and park infrastructure data were then integrated using spatially explicit models to test whether encounter risk levels and its components vary with forest fragmentation indicators and proximity to park infrastructure. Results Results suggest that, even at a very fine scales, certain landscape features and infrastructure can be predictors of risk levels. Both visitors and Borrelia burgdorferi-infected ticks concentrated in areas where forest cover was dominant, so there was a positive association between forest cover and the risk index. However, there were no associations between indicators of forest fragmentation and risk levels. Some high-risk clusters contributed disproportionately to the risk distribution in the park relative to their size. There were also two high-risk periods, one in early summer coinciding with peak nymphal activity, and one in early fall when park visitation was highest. Conclusions Here, we demonstrate the importance of integrating indicators of human behaviour visitation with tick distribution data to characterize risk patterns for tick-borne diseases in public natural areas. Indeed, understanding the environmental determinants of human-tick interactions will allow organisations to deploy more effective risk reduction interventions targeted at key locations and times, and improve the management of public health risks associated with tick-borne diseases in public spaces.

IntroductionIn eastern Canada, the boreal forest is associated with an important latitudinal shift in forest composition and structure, which occurs in the transition between the mixed southern boreal forest and the coniferous northern boreal forest. Along this transition, upland mixedwood stands with large deciduous trees (important for cavity-dependent vertebrate species) are gradually replaced by forests with smaller conifer trees, primarily black spruce (Picea mariana). Concomitantly, the availability of lowland forests flooded by the American beaver (Castor canadensis), which can provide adequate conditions for tree-cavity users, is also decreasing.MethodsWe hypothesized that this latitudinal gradient would bring important changes in the functional diversity and network structure of vertebrate cavity-using communities. Along this latitudinal gradient we used a nest web approach to analyze the structure and robustness of networks of cavity users in upland forests and in lowland forests flooded by beavers.ResultsDespite their low availability in the northern forest region, we found that mixedwood stands persisted throughout the boreal forest in being the main drivers of nest webs network structure of upland forests whereas old black spruce stands contribution was low. In lowland forests, beaver ponds harbored nest webs with a rich and complex structure in both forest regions. Species removal simulations revealed that across our latitudinal gradient upland and lowland forest nest webs responded differently. In upland forests, the removal of trembling aspen and the Pileated Woodpecker (Dryocopus pileatus) caused the highest proportions of secondary extinctions, showing low robustness of nest webs given that these two species were highly connected to the other species. Contrastingly, nest webs in beaver ponds were more robust mainly because excavator species used a higher diversity of tree species despite the removal of the Northern Flicker (Colaptes auratus) which induced numerous secondary extinctions. The Pileated Woodpecker remained the pivotal species across the two forest regions in upland forests whereas the Northern Flicker became the main large cavity provider in beaver ponds across the latitudinal gradient.DiscussionWe discuss how mixedwood forests and beaver ponds, which are key habitat types for the cavity-using vertebrate community across our latitudinal gradient, should be maintained and protected in landscapes under industrial timber harvesting.

Structural complexity generated by forest development processes and tree species compositional changes provide key habitat features for vertebrate communities that rely upon tree size and decay processes for foraging, denning or nesting. Complexity of forest structure in old stands could not only be key for harboring increased taxonomic species diversity but also greater functional diversity through more complexity in networks of tree cavity dependent species. Using a nest web approach that hierarchically links cavity-bearing trees with cavity formation agents (natural decay processes and avian excavators) and cavity users (non-excavator species), we compared network characteristics of nest webs along a time since fire gradient in a naturally disturbed boreal mixedwood forest landscape in eastern North America. Since 2003, twelve 24 to 40 ha plots ranging from 61 to more than 245 years after fire were surveyed at the Lake Duparquet Research and Teaching Forest in Abitibi, Quebec, Canada to detect active nesting, and denning cavities. We found that network complexity both in terms of number of vertebrate species and number of interactions among species, increased along the age gradient and was significantly higher in the older stands than predicted by chance. Whereas cavity-nesting communities in old forests used a higher diversity of tree species over a wide range of decay stages, trembling aspen remained a key cavity-bearing tree throughout the age gradient. Woodpeckers were the main cavity formation agents whereas less than 1% of cavities originated from natural decay. The structural development of older forests is thus a driver for functional diversity in cavity-using vertebrate communities through higher interaction richness in nest webs, among cavity-bearing trees, excavators and non-excavating users. The pivotal contribution of the entire gradient of old forest cover types to the overall complexity of nest webs in the boreal mixedwood zone is also a key for the resilience of the cavity-using vertebrate community to natural disturbances. We discuss how such resilience may be compromised by even-aged industrial timber harvesting with short rotations that shifts the age structure of boreal landscapes toward regenerating and young pole forests whereas old forest cover types become below their historical range of variability.

The Canadian boreal forest biome has been subjected to a long history of management for wood production. Here, we examined the cumulative impacts of logging on older forests in terms of area, distribution and patch configuration in the managed forest zones of the Eastern Canadian provinces of Ontario and Quebec. We also examined the consequences of these cumulative impacts on a once widely distributed and now threatened species, the woodland caribou (Rangifer tarandus caribou). The cumulative area of recently logged forest (since ~1976) was 14,024,619 ha, with 8,210,617 ha in Quebec and 5,814,002 ha in Ontario. The total area of older forests was 21,249,341 ha, with 11,840,474 ha in Quebec and 9,408,867 ha in Ontario. Patch statistics revealed that there were 1,085,822 older forests with core patches < 0.25 ha and an additional 603,052 < 1.0 ha. There were 52 > 10,00–50,000 ha and 8 < 50,000 ha. Older forest patches (critical caribou habitat) in the 21 local population ranges totalled 6,103,534 ha, distributed among ~387,102 patches with 362,933 < 10 ha and 14 > 50,000 ha. The median percentage of local population ranges that was disturbed was 53.5%, with Charlevoix having the maximum (90.3%) and Basse Côte-Nord the least (34.9%). Woodland caribou local population ranges with disturbed suitable habitats >35% are considered unable to support self-sustaining populations. We found that for the 21 caribou local population ranges examined, 3 were at very high risk (>75% area disturbed), 16 at high risk (>45 ≤ 75% area disturbed), and 2 at low risk (≤35% area disturbed). Major changes are needed in boreal forest management in Ontario and Quebec for it to be ecologically sustainable, including a greater emphasis on protection and restoration for older forests, and to lower the risks for caribou populations.

Protected natural areas in urban landscapes are doom to play an increasing ecological role in the maintenance of biodiversity as urbanization is progressing. Since the early 1990’s the city of Montréal has acquired a network of 1447 ha of the last remaining natural areas on the island to create nature parks. An ecosystem-based management approach has been developed to ensure the ecological integrity and quality of nature parks ecosystems and biodiversity through several environmental monitoring programs of which a breeding birds monitoring plays a pivotal role since 1997. In this paper we report the results of the first 10 years of this program where breeding birds have been annually monitored with permanent point count stations. Over the 1997-2007 period, the species composition of bird communities in nature parks has remained relatively stable whereas the proportion of species from forest habitats, open habitats (marshes, wetlands, prairies and abandoned fields) and edges reflect the diversity of habitats unique to each park. These relatively stable patterns of bird community composition over this 10 years’ period emphasize the potential of this protected areas’ network to contribute to the maintenance of breeding bird populations on Montreal island. At the opposite, the persisting low occurrences of most species that are sensitive to forest fragmentation highlights the challenge faced by nature parks to fully play their ecological role has habitat refuges for these species. The relationship between increased natural habitats in the neighborhood surrounding nature parks and increasing occurrence of one of these sensitive species, the Ovenbird, suggests that nature parks could quickly increase their capacity to maintain sensitive species provided that urban planning reduces the human footprint with buffers in the neighboring environment. Data for the 2008-2018 period should allow a better assessment of the trends of the first 10-years of this insightful bird monitoring program.

Sustainable management of forest ecosystems requires the use of reliable and easy to implement biodiversity and naturalness indicators. Tree-related microhabitats (TreMs) can fulfill these roles as they harbor specialized species that directly or indirectly depend on them, and are generally more abundant and diverse in natural forests or forests unmanaged for several decades. The TreM concept is however still recent, implying the existence of many knowledge gaps that can challenge its robustness and applicability. To evaluate the current state of knowledge on TreMs, we conducted a systematic review followed by a bibliometric analysis of the literature identified. A total of 101 articles constituted the final corpus. Most of the articles (60.3%) were published in 2017 or after. TreM research presented a marked lack of geographical representativity, as the vast majority (68.3%) of the articles studied French, German or Italian forests. The main themes addressed by the literature were the value of TreMs as biodiversity indicators, the impact of forest management on TreMs and the factors at the tree- and stand-scales favoring TreMs occurrence. Old-growth and unmanaged forests played a key role as a “natural” forest reference for these previous themes, as TreMs were often much more abundant and diverse compared to managed forests. Arthropods were the main phylum studied for the theme of TreMs as biodiversity indicators. Other more diverse themes were identified, such as restoration, remote sensing, climate change and economy and there was a lack of research related to the social sciences. Overall, current research on TreMs has focused on assessing its robustness as an indicator of biodiversity and naturalness at the stand scale. The important geographical gap identified underscores the importance of expanding the use of the TreMs in other forest ecosystems of the world. The notable efforts made in recent years to standardize TreM studies are an important step in this direction. The novelty of the TreM concept can partially explain the thematic knowledge gaps. Our results nevertheless stress the high potential of TreMs for multidisciplinary research, and we discuss the benefits of expanding the use of TreMs on a larger spatial scale.

Ixodes scapularis ticks are expanding their range in parts of northeastern North America, bringing with them pathogens of public health concern. While rodents like the white-footed mouse, Peromyscus leucopus, are considered the primary reservoir of many emerging tick-borne pathogens, the contribution of birds, as alternative hosts and reservoirs, to local transmission cycles has not yet been firmly established. From 2016 to 2018, we collected host-seeking ticks and examined rodent and bird hosts for ticks at 48 sites in a park where blacklegged ticks are established in Quebec, Canada, in order to characterize the distribution of pathogens in ticks and mammalian and avian hosts. We found nearly one third of captured birds (n = 849) and 70% of small mammals (n = 694) were infested with I. scapularis. Five bird and three mammal species transmitted Borrelia burgdorferi to feeding larvae (n larvae tested = 2257) and we estimated that about one fifth of the B. burgdorferi-infected questing nymphs in the park acquired their infection from birds, the remaining being attributable to mice. Ground-foraging bird species were more parasitized than other birds, and species that inhabited open habitat were more frequently infested and were more likely to transmit B. burgdorferi to larval ticks feeding upon them. Female birds were more likely to transmit infection than males, without age differentiation, whereas in mice, adult males were more likely to transmit infection than juveniles and females. We also detected Borrelia miyamotoi in larvae collected from birds, and Anaplasma phagocytophilum from a larva collected from a white-footed mouse. This study highlights the importance of characterising the reservoir potential of alternative reservoir hosts and to quantify their contribution to transmission dynamics in different species assemblages. This information is key to identifying the most effective host-targeted risk mitigation actions.

Abstract Landscape complexity can determine the population dynamics of interacting predators and prey. Yet, management plans are commonly developed from aspatial predictive models. This oversight may result in unexpected outcomes or the loss of opportunities to make spatial interventions that would increase a plan's effectiveness. The management of the threatened woodland caribou (Rangifer tarandus caribou), boreal population, provides an example of such shortcomings when using an aspatial approach. Currently, the most influential management recommendation is to maintain at least 65% of undisturbed forests in areas occupied by caribou populations, regardless of the spatial configuration of the forest cover. Using a spatially explicit individual‐based model (IBM), we evaluated the effects of the spatial configuration of cuts and roads on the mortality of boreal caribou living in sympatry with wolves (Canis lupus) and moose (Alces alces), an apparent competitor. Starting with a real forest landscape, we created forest management scenarios of the specific spatial distribution of cuts (mosaic, small, or large agglomeration) with increasing disturbance levels. We then ran the IBM with simulated agents, representing individuals of the three species, moving according to movement rules determined from radio‐collared individuals. We found that movement responses to land cover types and roads differed among species. For example, caribou and moose generally avoided areas close to roads, contrary to wolves. Those differences influenced the mortality of caribou agents, which not only depended on the levels of disturbance but also depended on the spatial distribution of cuts and roads. After controlling for disturbance level, wolves were more successful when forest management required an extensive road network resulting in relatively high habitat fragmentation. Caribou agents experienced lower mortality in landscapes with low densities of road and disturbance‐related edges. The effect remained much stronger, however, for the level than the spatial configuration of human disturbances. Still, our IBM demonstrated how landscape management could be used to manipulate species interactions, with the intent of either increasing or decreasing predation rates on specific populations, depending on management goals.

Abstract Background Monitoring of fur-bearing species populations is relatively rare due to their low densities. In addition to catch data, trappers’ experience provides information on the ecology and status of the harvested species. Fisher (Pekania pennanti) and American marten (Martes americana) are mustelids that are sensitive to forest management and therefore considered to be ecological indicators of forest health. Fisher populations have increased in eastern North America since the early 2000s and this could have resulted in a northeastern extension of the species’ range and increased overlap with marten’s range. Moreover, habitats of both species are subject to natural and anthropogenic disturbances. The objective of this study was to document the knowledge held by local trappers in the northern area of sympatry between fisher and marten to identify factors that could explain variation in populations of the two species and interactions between them. Method Forty-one semi-directed interviews with Indigenous and non-Indigenous trappers in the Abitibi-Témiscamingue region of western Quebec (Canada), at the northern limit of the overlapping ranges of the two mustelid species. Results Trappers highlighted the lack of exclusivity of marten and fisher to coniferous forests, although marten is more closely associated with them than is fisher. Fisher apparently also takes advantage of open environments, including agroforestry systems. Moreover, climate change increases the frequency of freeze-thaw events that cause the formation of an ice crust on the snow surface, which favors fisher movements. Conclusion The fisher was identified as a competitor and even a predator of the marten. Furthermore, the fisher is less affected than the marten by forest management, and it also seems to benefit from climate change to a greater extent.

Abstract Primary production can determine the outcome of management actions on ecosystem properties, thereby defining sustainable management. Yet human agencies commonly overlook spatio-temporal variations in productivity by recommending fixed resource extraction thresholds. We studied the influence of forest productivity on habitat disturbance levels that boreal caribou – a threatened, late-seral ungulate under top-down control – should be able to withstand. Based on 10 years of boreal caribou monitoring, we found that adult survival and recruitment to populations decreased with landscape disturbance, but increased with forest productivity. This benefit of productivity reflected the net outcome of an increase in resources for apparent competitors and predators of caribou, and a more rapid return to the safety of mature conifer forests. We estimated 3-fold differences in forest harvesting levels that caribou populations could withstand due to variations in forest productivity. The adjustment of ecosystem provisioning services to local forest productivity should provide strong conservation and socio-economic advantages.

Abstract Studying the response of wildlife to anthropogenic disturbances in light of their evolutionary history may help explain their capacity to adapt to novel ecological conditions. In the North American boreal forest, wildfire has been the main natural disturbance driving ecosystem dynamics for thousands of years. Boreal caribou (Rangifer tarandus caribou) is a threatened ungulate for which widespread decline has been associated with the rapid expansion of timber harvesting across its range. Although caribou may not be adapted to this new type of disturbance, cutovers share many similarities with wildfires by producing large landscapes of whole‐stand removal associated with an increased predation risk for caribou. We hypothesized that caribou with more evolutionary experience of fire disturbance should better perceive the cues associated with disturbances and adjust their behavior toward human disturbance accordingly. Given the extensive distribution of caribou populations in the boreal forest, we assessed how their historical exposure to wildfires could explain their behavioral response toward both burned and cutover areas. Our results indicate that caribou from regions with high historical burn rates displayed a consistent avoidance of recent burns (

Luteolin, a polyphenolic plant flavonoid, has been attributed with numerous beneficial properties like anti-cancer, antioxidant, and anti-inflammatory action. Luteolin has been reported earlier to be neuroprotective in models of spinal cord injury and traumatic brain injury and also induces neurite outgrowth in PC12 cells. However, the effect of luteolin on early differentiation, which might be important for its beneficial effects, is unknown. In this report, we show that luteolin negatively affects early differentiation of embryonic stem cells, hampering the formation of embryoid bodies. At later stages of differentiation, luteolin specifically inhibits neuronal differentiation, where the expression of early neuronal markers is suppressed, whereas luteolin treatment does not inhibit expression of meso- and endodermal markers. Further, in a developing zebrafish model, luteolin treatment leads to fewer numbers of mitotic cells in the brain. These specific effects of luteolin on neuronal differentiation could possibly be due to its ability to inhibit the lysine acetyltransferase, p300, since the structurally closely related p300 non-inhibitor flavonoid, apigenin, does not inhibit neuronal differentiation. These results show that luteolin perturbs neuronal differentiation of embryonic stem cells.

In this study, we aimed to investigate the effect of the two main active cannabinoids extracted from cannabis: Δ-9-tetrahydrocannabinol (THC) and cannabidiol (CBD) on two distinct behavioral models of induced neuro-hyperactivity. We have taken advantage of two previously developed zebrafish models of neuro-hyperactivity: a chemically induced pentylenetetrazole model and a genetic model caused by loss-of-function mutations in the GABA receptor subunit alpha 1 (GABRA1−/−). Both CBD and THC have a significant effect on the behavioral changes induced by both models. Importantly, we have also shown that when applied together at different ratios of THC to CBD (1:1, 1:5, and 1:10), there was a synergistic effect at a ratio of 1:1. This was particularly important for the genetically induced neuro-hyperactivity as it brought the concentrations of THC and CBD required to oppose the induced behavioral changes to levels that had much less of an effect on baseline larval behavior. The results of this study help to validate the ability of THC and CBD to oppose neuro-hyperactivity linked to seizure modalities. Additionally, it appears that individually, each cannabinoid may be more effective against the chemically induced model than against the GABRA1−/− transgenic model. However, when applied together, the concentration of each compound required to oppose the GABRA1−/− light-induced activity was lowered. This is of particular interest since the use of cannabinoids as therapeutics can be dampened by their side-effect profile. Reducing the level of each cannabinoid required may help to prevent off target effects that lead to side effects. Additionally, this study provides a validation of the complimentary nature of the two zebrafish models and sets a platform for future work with cannabinoids, particularly in the context of neuro-hyperactivity disorders such as epilepsy.

During development of the zebrafish embryo, glycine signaling promotes the differentiation of neural stem cells (NSCs). We found that glycine signaling suppresses the expression of Ligand of Numb X1 (lnx1, Ligand of numb protein-x1), a gene of unknown function during NSC differentiation that is selectively expressed in the embryonic central nervous system (CNS). As a consequence, Numb levels were stabilized and Notch activity (measured as her4.1 expression) was reduced, promoting NSC differentiation. These consequent actions were blocked by knockdown of lnx1. In contrast, lnx1 overexpression increased NSC proliferation and led to defects of neural tube closure at the early stages of development. Thus, our data provide evidence that glycine/lnx1 signaling modulates NSC proliferation by regulation of Notch signaling.

Glycine receptors (GlyRs) are ligand-gated chloride channels mediating inhibitory neurotransmission in the brain stem and spinal cord. They function as pentamers composed of alpha and beta subunits for which 5 genes have been identified in human (GLRA1, GLRA2, GLRA3, GLRA4, GLRB). Several in vitro studies showed that the pentameric subtype composition as well as its stoichiometry influence the distribution and the molecular function of the receptor. Moreover, mutations in some of these genes are involved in different human conditions ranging from tinnitus to epilepsy and hyperekplexia, suggesting distinct functions of the different subunits. Although the beta subunit is essential for synaptic clustering of the receptor, the specific role of each alpha subtype is still puzzling in vivo. The zebrafish genome encodes for five glycine receptor alpha subunits (glra1, glra2, glra3, glra4a, glra4b) thus offering a model of choice to investigate the respective role of each subtype on general motor behaviour. After establishing a phylogeny of GlyR subunit evolution between human and zebrafish, we checked the temporal expression pattern of these transcripts during embryo development. Interestingly, we found that glra1 is the only maternally transmitted alpha subunit. We also showed that the expression of the different GlyR subunits starts at different time points during development. Lastly, in order to decipher the role of each alpha subunit on the general motor behaviour of the fish, we knocked out individually each alpha subunit by CRISPR/Cas9-targeted mutagenesis. Surprisingly, we found that knocking out any of the alpha2, 3, a4a or a4b subunit did not lead to any obvious developmental or motor phenotype. However, glra1-/- (hitch) embryos depicted a strong motor dysfunction from 3 days, making them incapable to swim and thus leading to their premature death. Our results infer a strong functional redundancy between alpha subunits and confirm the central role played by glra1 for proper inhibitory neurotransmission controlling locomotion. The genetic tools we developed here will be of general interest for further studies aiming at dissecting the role of GlyRs in glycinergic transmission in vivo and the hitch mutant (hic) is of specific relevance as a new model of hyperekplexia.

Amyotrophic lateral sclerosis (ALS) is a late-onset progressive neurodegenerative disorder that affects both upper and lower motor neurons, leading to muscle atrophy with spasticity and eventual death in 3–5 years after the disease onset. More than 50 mutations linked to ALS have been found in the gene TARDBP, encoding the protein TDP-43 that is the predominant component of neuronal inclusions in ALS. TDP-43 is an RNA binding protein with glycine-rich domains that binds to more than 6,000 RNAs in the human brain. However, ALS-related mutations do not appear to affect the function of these genes, indicating that a toxic gain-of-function may occur. We generated transgenic zebrafish lines expressing human TDP-43, either the wild-type form or the ALS-causative G348C mutation identified in a subset of ALS patients, with the transgene expression driven by an inducible heat shock promoter in order to bypass a potential early mortality. The expression of the mutant but not the wild-type human TDP-43 in zebrafish embryos induced a reduction of the locomotor activity in response to touch compared to controls and moderate axonopathy of the motor neurons of the spinal cord, with premature branching of the main axonal branch, recapitulating previous results obtained by mRNA injections. We used these lines to investigate transcriptomic changes due to the presence of mutant TDP-43 using RNA sequencing and have found 159 genes that are differentially expressed compared to control, with 67 genes up-regulated and 92 genes down-regulated. These transcriptomic changes are in line with recent transcriptomic data obtained in mouse models, indicating that these zebrafish transgenic lines are adequate to further study TDP-43-related ALS.

Glycine is mainly known as an inhibitory neurotransmitter in adult mature neurons, regulating neuronal network activity in the central nervous system. In contrast, during embryogenesis glycine can act as an excitatory neurotransmitter and generates the first electrical signal in immature neurons. The roles and functional significance of this excitatory glycinergic activity during neurodevelopment are still unclear. Using the zebrafish embryo as a model, we previously showed that glycine regulates proliferation and differentiation of neural stem cells (NSCs) to interneurons. Moreover, we identified that glycine signaling in NSCs is associated with several common developmental pathways and surprisingly also the p53-related apoptosis. Here we investigated how glycine signaling regulates NSC survival. First, we showed by two approaches, acridine orange staining and active caspase 3 immunostaining that defects in glycine signaling induce an early and transient cell death, which was suppressed by knockdown of p53. Then, we developed an NSC transplantation strategy to directly assess NSC-autonomous development upon perturbing glycine signaling. In vivo time-lapse imaging showed that disruption of glycine signaling disturbed the normal NSC interkinetic nuclear migration, leading to cell cycle arrest and apoptosis. Finally, we analyzed two main subpopulations of NSCs, expressing either nestin or GFAP, by in situ labeling and in transgenic lines expressing GFP in either population. We found that disruption of glycine signaling induced a drastic and selective loss of nestin-positive (nestin+) NSCs, which was only partially rescued upon p53 knockdown. Taken together, our findings support a role of glycine signaling in promoting survival of the nestin+ NSC subpopulation early during development.

Environmental enrichment (EE) is a powerful stimulus of brain plasticity and is among the most accessible treatment options for brain disease. In rodents, EE is modeled using multi-factorial environments that include running, social interactions, and/or complex surroundings. Here, we show that running and running-independent EE differentially affect the hippocampal dentate gyrus (DG), a brain region critical for learning and memory. Outbred male CD1 mice housed individually with a voluntary running disk showed improved spatial memory in the radial arm maze compared to individually- or socially-housed mice with a locked disk. We therefore used RNA sequencing to perform an unbiased interrogation of DG gene expression in mice exposed to either a voluntary running disk (RUN), a locked disk (LD), or a locked disk plus social enrichment and tunnels [i.e., a running-independent complex environment (CE)]. RNA sequencing revealed that RUN and CE mice showed distinct, non-overlapping patterns of transcriptomic changes versus the LD control. Bio-informatics uncovered that the RUN and CE environments modulate separate transcriptional networks, biological processes, cellular compartments and molecular pathways, with RUN preferentially regulating synaptic and growth-related pathways and CE altering extracellular matrix-related functions. Within the RUN group, high-distance runners also showed selective stress pathway alterations that correlated with a drastic decline in overall transcriptional changes, suggesting that excess running causes a stress-induced suppression of running’s genetic effects. Our findings reveal stimulus-dependent transcriptional signatures of EE on the DG, and provide a resource for generating unbiased, data-driven hypotheses for novel mediators of EE-induced cognitive changes.

Motor neuron disorders (MNDs) are a clinically heterogeneous group of neurological diseases characterized by progressive degeneration of motor neurons, and share some common pathological pathways. Despite remarkable advances in our understanding of these diseases, no curative treatment for MNDs exists. To better understand the pathogenesis of MNDs and to help develop new treatments, the establishment of animal models that can be studied efficiently and thoroughly is paramount. The zebrafish (Danio rerio) is increasingly becoming a valuable model for studying human diseases and in screening for potential therapeutics. In this Review, we highlight recent progress in using zebrafish to study the pathology of the most common MNDs: spinal muscular atrophy (SMA), amyotrophic lateral sclerosis (ALS) and hereditary spastic paraplegia (HSP). These studies indicate the power of zebrafish as a model to study the consequences of disease-related genes, because zebrafish homologues of human genes have conserved functions with respect to the aetiology of MNDs. Zebrafish also complement other animal models for the study of pathological mechanisms of MNDs and are particularly advantageous for the screening of compounds with therapeutic potential. We present an overview of their potential usefulness in MND drug discovery, which is just beginning and holds much promise for future therapeutic development.

C. elegans and D. rerio expressing mutant TAR DNA Binding Protein 43 (TDP-43) are powerful in vivo animal models for the genetics and pharmacology of amyotrophic lateral sclerosis (ALS). Using these small-animal models of ALS, we previously identified methylene blue (MB) as a potent suppressor of TDP-43 toxicity. Consequently here we investigated how MB might exert its neuroprotective properties and found that it acts through reduction of the endoplasmic reticulum (ER) stress response. We tested other compounds known to be active in the ER unfolded protein response in worms and zebrafish expressing mutant human TDP-43 (mTDP-43). We identified three compounds: salubrinal, guanabenz and a new structurally related compound phenazine, which also reduced paralysis, neurodegeneration and oxidative stress in our mTDP-43 models. Using C. elegans genetics, we showed that all four compounds act as potent suppressors of mTDP-43 toxicity through reduction of the ER stress response. Interestingly, these compounds operate through different branches of the ER unfolded protein pathway to achieve a common neuroprotective action. Our results indicate that protein-folding homeostasis in the ER is an important target for therapeutic development in ALS and other TDP-43-related neurodegenerative diseases.

TAR DNA binding protein (TDP-43) is a 43 kD, predominately nuclear, protein involved in RNA metabolism. Of clinical significance is that the majority of amyotrophic lateral sclerosis (ALS) patients display abnormal accumulation of misfolded TDP-43 in the cytoplasm, which is coincident with a loss of nuclear localization in the afflicted regions of the central nervous system. Little is known about defects that arise in loss-of-function models, in particular synaptic defects that arise at the neuromuscular junction (NMJ). In this report, we examined abnormalities arising at the NMJ following depletion of tdp-43 using a previously characterized mutant tardbp (encoding tdp-43) zebrafish line containing a premature stop codon (Y220X) that results in an unstable and degraded protein. Homozygous tardbpY220X/Y220X zebrafish do not produce tdp-43 but develop normally due to expression of an alternative splice variant of tardbpl (tardbp paralog). Using an antisense morpholino oligonucleotide to knockdown expression of the tardbpl in tardbpY220X/Y220X embryos, we examined locomotor defects, NMJ structural abnormalities and release of quantal synaptic vesicles at the NMJ. As in previous reports, larvae depleted of tdp-43 display reduced survival, gross morphological defects and severely impaired locomotor activity. These larvae also displayed an increased number of orphaned pre- and postsynaptic NMJ markers but surprisingly, we observed a significant increase (3.5 times) in the frequency of quantal acetylcholine release at the NMJ in larvae depleted of tdp-43. These results indicate that reduced TDP-43 levels alter quantal vesicle release at the NMJ during vertebrate development and may be relevant for understanding synaptic dysfunction in ALS.

The methodology for site-directed editing of single nucleotides in the vertebrate genome is of considerable interest for research in biology and medicine. The clustered regularly interspaced short palindromic repeats (CRISPR)/CRISPR-associated protein 9 type II (Cas9) system has emerged as a simple and inexpensive tool for editing genomic loci of interest in a variety of animal models. In zebrafish, error-prone non-homologous end joining (NHEJ) has been used as a simple method to disrupt gene function. We sought to develop a method to easily create site-specific SNPs in the zebrafish genome. Here, we report simple methodologies for using CRISPR/Cas9-mediated homology directed repair using single-stranded oligodeoxynucleotide donor templates (ssODN) for site-directed single nucleotide editing, for the first time in two disease-related genes, tardbp and fus.

The zebrafish posterior lateral line is formed during early development by the deposition of neuromasts from a migrating primordium. The molecular mechanisms regulating the regional organization and migration of the primordium involve interactions between Fgf and Wnt/β-catenin signaling and the establishment of specific cxcr4b and cxcr7b cytokine receptor expression domains. Itch has been identified as a regulator in several different signaling pathways, including Wnt and Cxcr4 signaling. We identified two homologous itch genes in zebrafish, itcha and itchb, with generalized expression patterns. By reducing itchb expression in particular upon morpholino knockdown, we demonstrated the importance of Itch in regulating lateral line development by perturbing the patterns of cxcr4b and cxcr7b expression. Itch knockdown results in a failure to down-regulate Wnt signaling and overexpression of cxcr4b in the primordium, slowing migration of the posterior lateral line primordium and resulting in abnormal development of the lateral line.

Hereditary sensory and autonomic neuropathy type 2 (HSNAII) is a rare pathology characterized by an early onset of severe sensory loss (all modalities) in the distal limbs. It is due to autosomal recessive mutations confined to exon "HSN2" of the WNK1 (with-no-lysine protein kinase 1) serine-threonine kinase. While this kinase is well studied in the kidneys, little is known about its role in the nervous system. We hypothesized that the truncating mutations present in the neural-specific HSN2 exon lead to a loss-of-function of the WNK1 kinase, impairing development of the peripheral sensory system. To investigate the mechanisms by which the loss of WNK1/HSN2 isoform function causes HSANII, we used the embryonic zebrafish model and observed strong expression of WNK1/HSN2 in neuromasts of the peripheral lateral line (PLL) system by immunohistochemistry. Knocking down wnk1/hsn2 in embryos using antisense morpholino oligonucleotides led to improper PLL development. We then investigated the reported interaction between the WNK1 kinase and neuronal potassium chloride cotransporter KCC2, as this transporter is a target of WNK1 phosphorylation. In situ hybridization revealed kcc2 expression in mature neuromasts of the PLL and semi-quantitative RT-PCR of wnk1/hsn2 knockdown embryos showed an increased expression of kcc2 mRNA. Furthermore, overexpression of human KCC2 mRNA in embryos replicated the wnk1/hsn2 knockdown phenotype. We validated these results by obtaining double knockdown embryos, both for wnk1/hsn2 and kcc2, which alleviated the PLL defects. Interestingly, overexpression of inactive mutant KCC2-C568A, which does not extrude ions, allowed a phenocopy of the PLL defects. These results suggest a pathway in which WNK1/HSN2 interacts with KCC2, producing a novel regulation of its transcription independent of KCC2's activation, where a loss-of-function mutation in WNK1 induces an overexpression of KCC2 and hinders proper peripheral sensory nerve development, a hallmark of HSANII.

An exciting advance in the understanding of metapopulation dynamics has been the investigation of how populations respond to ephemeral patches that go 'extinct' during the lifetime of an individual. Previous research has shown that this scenario leads to genetic homogenization across large spatial scales. However, little is known about fine-scale genetic structuring or how this changes over time in ephemeral patches. We predicted that species that specialize on ephemeral habitats will delay dispersal to exploit natal habitat patches while resources are plentiful and thus display fine-scale structure. To investigate this idea, we evaluated the effect of frequent colonization of ephemeral habitats on the fine-scale genetic structure of a fire specialist, the black-backed woodpecker (Picoides arcticus) and found a pattern of fine-scale genetic structure. We then tested for differences in spatial structure between sexes and detected a pattern consistent with male-biased dispersal. We also detected a temporal increase in relatedness among individuals within newly burned forest patches. Our results indicate that specialist species that outlive their ephemeral patches can accrue significant fine-scale spatial structure that does not necessarily affect spatial structure at larger scales. This highlights the importance of both spatial and temporal scale considerations in both sampling and data interpretation of molecular genetic results.

Terrestrial mammals are strongly influenced by seasonal changes in environmental conditions. Studies of animal space use behaviour are therefore inherently seasonal in nature. We propose an individual-based quantitative method for identifying seasonal shifts in caribou movement behaviour and we demonstrate its use in determining the onset of the winter, spring dispersal, and calving seasons. Using pooled data for the population we demonstrate an alternate approach using polynomial regression with mixed effects. We then compare individual onset dates with population-based estimates and those adopted by expert consensus for our study area. Distributions of individual-based onset dates were normally distributed with prominent modes; however, there was considerable variation in individual onset times. Population-based estimates were closer to the peaks of individual estimates than were expert-based estimates, which fell outside the onetailed 90% and 95% sample quantiles of individually-fitted distributions for spring and winter, respectively. Both expertand population-based estimates were later for winter and earlier for both spring and calving than were individual-based estimates. We discuss the potential consequences of neglecting to corroborate conventionally used dates with observed seasonal trends in movement behaviour. In closing, we recommend researchers adopt an individual-based quantitative approach and a variable temporal window for data set extraction.

Mutations in the DNA/RNA binding proteins TDP-43 and FUS are associated with Amyotrophic Lateral Sclerosis and Frontotemporal Lobar Degeneration. Intracellular accumulations of wild type TDP-43 and FUS are observed in a growing number of late-onset diseases suggesting that TDP-43 and FUS proteinopathies may contribute to multiple neurodegenerative diseases. To better understand the mechanisms of TDP-43 and FUS toxicity we have created transgenic Caenorhabditis elegans strains that express full-length, untagged human TDP-43 and FUS in the worm's GABAergic motor neurons. Transgenic worms expressing mutant TDP-43 and FUS display adult-onset, age-dependent loss of motility, progressive paralysis and neuronal degeneration that is distinct from wild type alleles. Additionally, mutant TDP-43 and FUS proteins are highly insoluble while wild type proteins remain soluble suggesting that protein misfolding may contribute to toxicity. Populations of mutant TDP-43 and FUS transgenics grown on solid media become paralyzed over 7 to 12 days. We have developed a liquid culture assay where the paralysis phenotype evolves over several hours. We introduce C. elegans transgenics for mutant TDP-43 and FUS motor neuron toxicity that may be used for rapid genetic and pharmacological suppressor screening.

CHARGE syndrome is caused by mutations in the CHD7 gene. Several organ systems including the retina, cranial nerves, inner ear and heart are affected in CHARGE syndrome. However, the mechanistic link between mutations in CHD7 and many of the organ systems dysfunction remains elusive. Here, we show that Chd7 is required for the organization of the neural retina in zebrafish. We observe an abnormal expression or a complete absence of molecular markers for the retinal ganglion cells and photoreceptors, indicating that Chd7 regulates the differentiation of retinal cells and plays an essential role in retinal cell development. In addition, zebrafish with reduced Chd7 display an abnormal organization and clustering of cranial motor neurons. We also note a pronounced reduction in the facial branchiomotor neurons and the vagal motor neurons display aberrant positioning. Further, these fish exhibit a severe loss of the facial nerves. Knock-down of Chd7 results in a curvature of the long body axis and these fish develop irregular shaped vertebrae and have a reduction in bone mineralization. Chd7 knockdown also results in a loss of proper segment polarity illustrated by flawed efnb2a and ttna expression, which is associated with later vascular segmentation defects. These critical roles for Chd7 in retinal and vertebral development were previously unrecognized and our results provide new insights into the role of Chd7 during development and in CHARGE syndrome pathogenesis.

The DNA/RNA-binding proteins TDP-43 and FUS are found in protein aggregates in a growing number of neurodegenerative diseases, including amyotrophic lateral sclerosis (ALS) and related dementia, but little is known about the neurotoxic mechanisms. We have generated Caenorhabditis elegans and zebrafish animal models expressing mutant human TDP-43 (A315T or G348C) or FUS (S57Δ or R521H) that reflect certain aspects of ALS including motor neuron degeneration, axonal deficits, and progressive paralysis. To explore the potential of our humanized transgenic C. elegans and zebrafish in identifying chemical suppressors of mutant TDP-43 and FUS neuronal toxicity, we tested three compounds with potential neuroprotective properties: lithium chloride, methylene blue and riluzole. We identified methylene blue as a potent suppressor of TDP-43 and FUS toxicity in both our models. Our results indicate that methylene blue can rescue toxic phenotypes associated with mutant TDP-43 and FUS including neuronal dysfunction and oxidative stress.

Mutations in the SOD1 and TARDBP genes have been commonly identified in Amyotrophic Lateral Sclerosis (ALS). Recently, mutations in the Fused in sarcoma gene (FUS) were identified in familial (FALS) ALS cases and sporadic (SALS) patients. Similarly to TDP-43 (coded by TARDBP gene), FUS is an RNA binding protein. Using the zebrafish (Danio rerio), we examined the consequences of expressing human wild-type (WT) FUS and three ALS-related mutations, as well as their interactions with TARDBP and SOD1. Knockdown of zebrafish Fus yielded a motor phenotype that could be rescued upon co-expression of wild-type human FUS. In contrast, the two most frequent ALS-related FUS mutations, R521H and R521C, unlike S57Δ, failed to rescue the knockdown phenotype, indicating loss of function. The R521H mutation caused a toxic gain of function when expressed alone, similar to the phenotype observed upon knockdown of zebrafish Fus. This phenotype was not aggravated by co-expression of both mutant human TARDBP (G348C) and FUS (R521H) or by knockdown of both zebrafish Tardbp and Fus, consistent with a common pathogenic mechanism. We also observed that WT FUS rescued the Tardbp knockdown phenotype, but not vice versa, suggesting that TARDBP acts upstream of FUS in this pathway. In addition we observed that WT SOD1 failed to rescue the phenotype observed upon overexpression of mutant TARDBP or FUS or upon knockdown of Tardbp or Fus; similarly, WT TARDBP or FUS also failed to rescue the phenotype induced by mutant SOD1 (G93A). Finally, overexpression of mutant SOD1 exacerbated the motor phenotype caused by overexpression of mutant FUS. Together our results indicate that TARDBP and FUS act in a pathogenic pathway that is independent of SOD1.

Large secondary-nesting birds such as ducks rely on appropriate cavities for breeding. The main objective of this study was to assess the availability of large cavities and the potential of a managed boreal coniferous landscape to provide nesting trees within the breeding area of the eastern population of Barrow’s Goldeneye (Bucephala islandica), a cavity-nesting species at risk in Canada. Woodpecker surveys were conducted in both conifer and mixed-wood landscapes, and cavities were sought in line transects distributed in unharvested and linear remnant stands of balsam fir (Abies balsamea) and black spruce (Picea mariana) as well as in cutblocks. No Pileated Woodpeckers (Dryocopus pileatus) were detected in the breeding area of Barrow’s Goldeneye, but the species was present in the nearby lowland area in which trembling aspen (Populus tremuloides) is abundant. Only 10 trees (0.2% of those sampled) supported cavities considered suitable for Barrow’s Goldeneye in terms of dimensions and canopy openness. Most of the suitable cavities found during this study were nonexcavated apical (chimney) cavities in relatively short snags that showed advanced states of decay. A diameter-at-breast-height threshold was determined for each tree species, after which the probability of cavity occurrence was enhanced in terms of potential cavity trees for Barrow’s Goldeneye. Remnant linear forest sites had lower potential tree densities than did their unharvested equivalents. Large cavities were thus a rare component in this boreal landscape, suggesting that they may be a limiting factor for this population at risk. Current even-aged forest management that mainly relies on clear-cut practices is likely to further reduce the potential of this landscape to provide trees with suitable cavities.

Adaptor protein (AP) complexes regulate clathrin-coated vesicle assembly, protein cargo sorting, and vesicular trafficking between organelles in eukaryotic cells. Because disruption of the various subunits of the AP complexes is embryonic lethal in the majority of cases, characterization of their function in vivo is still lacking. Here, we describe the first mutation in the human AP1S1 gene, encoding the small subunit sigma1A of the AP-1 complex. This founder splice mutation, which leads to a premature stop codon, was found in four families with a unique syndrome characterized by mental retardation, enteropathy, deafness, peripheral neuropathy, ichthyosis, and keratodermia (MEDNIK). To validate the pathogenic effect of the mutation, we knocked down Ap1s1 expression in zebrafish using selective antisens morpholino oligonucleotides (AMO). The knockdown phenotype consisted of perturbation in skin formation, reduced pigmentation, and severe motility deficits due to impaired neural network development. Both neural and skin defects were rescued by co-injection of AMO with wild-type (WT) human AP1S1 mRNA, but not by co-injecting the truncated form of AP1S1, consistent with a loss-of-function effect of this mutation. Together, these results confirm AP1S1 as the gene responsible for MEDNIK syndrome and demonstrate a critical role of AP1S1 in development of the skin and spinal cord.

Woodland caribou (Rangifer tarandus caribou) require a diversity of forested habitats over large areas and may thus be particularly affected by the large-scale changes in the composition and age-class distribution of forest landscapes induced by the northern expansion of forest management. In this study we examine habitat characteristics associated to the use of calving areas by woodland caribou females and calves at different spatial scales. Thirty females were captured and collared with Argos satellite transmitters that allowed to locate 14 calving areas. Field surveys were conducted at each of these areas to measure the landscape composition of forest cover types and local vegetation characteristics that are used for both forage conditions and protection cover. At the scale of the calving area, univariate comparisons of the amount of forest cover types between sites with and without calves showed that the presence of calves was associated to mature black spruce forest with a high percent cover of terrestrial lichens. Within calving grounds, univariate comparisons showed that vegetation features like ericaceans and terrestrial lichens, that are important food resources for lactating females, were more abundant in calving areas where females were seen with a calf in mid-July than in areas where females were seen alone. The protection of the vegetation cover against predators was however similar between calving areas with or with¬out a calf. Logistic regression results also indicated that vegetation characteristics associated to forage conditions were positively associated to calf presence on calving grounds. Our results suggest that foraging conditions should be given more attention in analyses on habitat requirements of woodland caribou.