47 results on '"Popkin-Hall, Zachary R."'
Search Results
2. High-throughput genotyping of Plasmodium vivax in the Peruvian Amazon via molecular inversion probes
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Popkin-Hall, Zachary R., Niaré, Karamoko, Crudale, Rebecca, Simkin, Alfred, Fola, Abebe A., Sanchez, Juan F., Pannebaker, Danielle L., Giesbrecht, David J., Kim, Jr., Isaac E., Aydemir, Özkan, Bailey, Jeffrey A., Valdivia, Hugo O., and Juliano, Jonathan J.
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- 2024
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3. Genetic polymorphism and evidence of signatures of selection in the Plasmodium falciparum circumsporozoite protein gene in Tanzanian regions with different malaria endemicity
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Lyimo, Beatus M., Bakari, Catherine, Popkin-Hall, Zachary R., Giesbrecht, David J., Seth, Misago D., Pereus, Dativa, Shabani, Zulfa I., Moshi, Ramadhan, Boniface, Ruth, Mandara, Celine I., Madebe, Rashid, Juliano, Jonathan J., Bailey, Jeffrey A., and Ishengoma, Deus S.
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- 2024
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4. Plasmodium falciparum pfhrp2 and pfhrp3 gene deletions among patients enrolled at 100 health facilities throughout Tanzania: February to July 2021
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Rogier, Eric, Battle, Nastassia, Bakari, Catherine, Seth, Misago D., Nace, Douglas, Herman, Camelia, Barakoti, Achut, Madebe, Rashid A., Mandara, Celine I., Lyimo, Beatus M., Giesbrecht, David J., Popkin-Hall, Zachary R., Francis, Filbert, Mbwambo, Daniel, Garimo, Issa, Aaron, Sijenunu, Lusasi, Abdallah, Molteni, Fabrizio, Njau, Ritha, Cunningham, Jane A., Lazaro, Samwel, Mohamed, Ally, Juliano, Jonathan J., Bailey, Jeffrey A., Udhayakumar, Venkatachalam, and Ishengoma, Deus S.
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- 2024
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5. Prevalence of non-falciparum malaria infections among asymptomatic individuals in four regions of Mainland Tanzania
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Popkin-Hall, Zachary R., Seth, Misago D., Madebe, Rashid A., Budodo, Rule, Bakari, Catherine, Francis, Filbert, Pereus, Dativa, Giesbrecht, David J., Mandara, Celine I., Mbwambo, Daniel, Aaron, Sijenunu, Lusasi, Abdallah, Lazaro, Samwel, Bailey, Jeffrey A., Juliano, Jonathan J., Gutman, Julie R., and Ishengoma, Deus S.
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- 2024
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6. Prevalence of mutations associated with artemisinin partial resistance and sulfadoxine–pyrimethamine resistance in 13 regions in Tanzania in 2021: a cross-sectional survey
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Juliano, Jonathan J, Giesbrecht, David J, Simkin, Alfred, Fola, Abebe A, Lyimo, Beatus M, Pereus, Dativa, Bakari, Catherine, Madebe, Rashid A, Seth, Misago D, Mandara, Celine I, Popkin-Hall, Zachary R, Moshi, Ramadhan, Mbwambo, Ruth B, Niaré, Karamoko, MacInnis, Bronwyn, Francis, Filbert, Mbwambo, Daniel, Garimo, Issa, Chacky, Frank, Aaron, Sijenunu, Lusasi, Abdallah, Molteni, Fabrizio, Njau, Ritha J A, Nhiga, Samwel L, Mohamed, Ally, Bailey, Jeffrey A, and Ishengoma, Deus S
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- 2024
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7. The role of the major chemosensory organs in the host-seeking activity of Anopheles coluzzii (Diptera: Culicidae)
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Popkin-Hall, Zachary R, primary and Slotman, Michel A, additional
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- 2024
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8. Evaluation of Malaria Rapid Diagnostic Test Performance and pfhrp2 Deletion in Tanzania School Surveys, 2017
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Ngasala, Billy, primary, Chacky, Frank, additional, Mohamed, Ally, additional, Molteni, Fabrizio, additional, Nyinondi, Ssanyu, additional, Kabula, Bilali, additional, Mkali, Humphrey, additional, Thwai, Kyaw, additional, Popkin-Hall, Zachary R., additional, Mitchell, Cedar, additional, Parr, Jonathan B., additional, Juliano, Jonathan J., additional, and Lin, Jessica T., additional
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- 2024
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9. Strong isolation by distance and evidence of population microstructure reflect ongoing Plasmodium falciparum transmission in Zanzibar
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Connelly, Sean V., primary, Brazeau, Nicholas F., additional, Msellem, Mwinyi, additional, Ngasala, Billy E., additional, Aydemir, Özkan, additional, Goel, Varun, additional, Niaré, Karamoko, additional, Giesbrecht, David J., additional, Popkin-Hall, Zachary R., additional, Hennelly, Christopher M., additional, Park, Zackary, additional, Moormann, Ann M., additional, Ong’echa, John Michael, additional, Verity, Robert, additional, Mohammed, Safia, additional, Shija, Shija J., additional, Mhamilawa, Lwidiko E., additional, Morris, Ulrika, additional, Mårtensson, Andreas, additional, Lin, Jessica T., additional, Björkman, Anders, additional, Juliano, Jonathan J., additional, and Bailey, Jeffrey A., additional
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- 2024
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10. Author response: Strong isolation by distance and evidence of population microstructure reflect ongoing Plasmodium falciparum transmission in Zanzibar
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Connelly, Sean V., primary, Brazeau, Nicholas F., additional, Msellem, Mwinyi, additional, Ngasala, Billy E., additional, Aydemir, Özkan, additional, Goel, Varun, additional, Niaré, Karamoko, additional, Giesbrecht, David J., additional, Popkin-Hall, Zachary R., additional, Hennelly, Christopher M., additional, Park, Zackary, additional, Moormann, Ann M., additional, Ong’echa, John Michael, additional, Verity, Robert, additional, Mohammed, Safia, additional, Shija, Shija J., additional, Mhamilawa, Lwidiko E., additional, Morris, Ulrika, additional, Mårtensson, Andreas, additional, Lin, Jessica T., additional, Björkman, Anders, additional, Juliano, Jonathan J., additional, and Bailey, Jeffrey A., additional
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- 2024
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11. Population genomics ofPlasmodium ovalespecies in sub-Saharan Africa
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Carey-Ewend, Kelly, primary, Popkin-Hall, Zachary R., additional, Simkin, Alfred, additional, Muller, Meredith, additional, Hennelly, Chris, additional, He, Wenqiao, additional, Moser, Kara A., additional, Gaither, Claudia, additional, Niaré, Karamoko, additional, Aghakanian, Farhang, additional, Feleke, Sindew, additional, Brhane, Bokretsion G., additional, Phanzu, Fernandine, additional, Mwandagalirwa, Kashamuka, additional, Aydemir, Ozkan, additional, Sutherland, Colin, additional, Ishengoma, Deus S., additional, Ali, Innocent M., additional, Ngasala, Billy, additional, Kalonji, Albert, additional, Tshefu, Antoinette, additional, Parr, Jonathan, additional, Bailey, Jeffrey A., additional, Juliano, Jonathan J., additional, and Lin, Jessica T., additional
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- 2024
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12. Strong isolation by distance and evidence of population microstructure reflect ongoing Plasmodium falciparum transmission in Zanzibar
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Connelly, Sean, V, Brazeau, Nicholas F., Msellem, Mwinyi, Ngasala, Billy E., Aydemir, Ozkan, Goel, Varun, Niare, Karamoko, Giesbrecht, David J., Popkin-Hall, Zachary R., Hennelly, Chris, Park, Zackary, Moormann, Ann M., Ong'echa, John M., Verity, Robert, Mohammed, Safia, Shija, Shija J., Mhamilawa, Lwidiko E., Morris, Ulrika, Mårtensson, Andreas, Lin, Jessica T., Bjorkman, Anders, Juliano, Jonathan J., Bailey, Jeffrey A., Connelly, Sean, V, Brazeau, Nicholas F., Msellem, Mwinyi, Ngasala, Billy E., Aydemir, Ozkan, Goel, Varun, Niare, Karamoko, Giesbrecht, David J., Popkin-Hall, Zachary R., Hennelly, Chris, Park, Zackary, Moormann, Ann M., Ong'echa, John M., Verity, Robert, Mohammed, Safia, Shija, Shija J., Mhamilawa, Lwidiko E., Morris, Ulrika, Mårtensson, Andreas, Lin, Jessica T., Bjorkman, Anders, Juliano, Jonathan J., and Bailey, Jeffrey A.
- Abstract
Background: The Zanzibar archipelago of Tanzania has become a low-transmission area for Plasmodium falciparum. Despite being considered an area of pre-elimination for years, achieving elimination has been difficult, likely due to a combination of imported infections from mainland Tanzania and continued local transmission. Methods: To shed light on these sources of transmission, we applied highly multiplexed genotyping utilizing molecular inversion probes to characterize the genetic relatedness of 282 P. falciparum isolates collected across Zanzibar and in Bagamoyo district on the coastal mainland from 2016 to 2018. Results: Overall, parasite populations on the coastal mainland and Zanzibar archipelago remain highly related. However, parasite isolates from Zanzibar exhibit population microstructure due to the rapid decay of parasite relatedness over very short distances. This, along with highly related pairs within shehias, suggests ongoing low-level local transmission. We also identified highly related parasites across shehias that reflect human mobility on the main island of Unguja and identified a cluster of highly related parasites, suggestive of an outbreak, in the Micheweni district on Pemba island. Parasites in asymptomatic infections demonstrated higher complexity of infection than those in symptomatic infections, but have similar core genomes. Conclusions: Our data support importation as a main source of genetic diversity and contribution to the parasite population in Zanzibar, but they also show local outbreak clusters where targeted interventions are essential to block local transmission. These results highlight the need for preventive measures against imported malaria and enhanced control measures in areas that remain receptive to malaria reemergence due to susceptible hosts and competent vectors.
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- 2024
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13. Genetic polymorphism and evidence of signatures of selection in the Plasmodium falciparum circumsporozoite protein gene in Tanzanian regions with different malaria endemicity
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Lyimo, BEATUS M, primary, Bakari, Catherine, additional, Popkin-Hall, Zachary R, additional, Giesbrecht, David J, additional, Seth, Misago D, additional, Pereus, Dativa, additional, Moshi, Ramadhan, additional, Boniface, Ruth, additional, Mandara, Celine I, additional, Madebe, Rashid, additional, Juliano, Jonathan J, additional, Bailey, Jeffrey A, additional, and Ishengoma, Deus S, additional
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- 2024
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14. Malaria species positivity rates among symptomatic individuals across regions of differing transmission intensities in Mainland Tanzania
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Popkin Hall, Zachary R, primary, Seth, Misago D, additional, Madebe, Rashid A, additional, Budodo, Rule, additional, Bakari, Catherine, additional, Francis, Filbert, additional, Pereus, Dativa, additional, Giesbrecht, David J, additional, Mandara, Celine I, additional, Mbwambo, Daniel, additional, Aaron, Sijenunu, additional, Lusasi, Abdallah, additional, Lazaro, Samwel, additional, Bailey, Jeffrey A, additional, Juliano, Jonathan J, additional, and Ishengoma, Deus S, additional
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- 2023
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15. Strong isolation by distance and evidence of population microstructure reflect ongoing Plasmodium falciparum transmission in Zanzibar
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Connelly, Sean V., primary, Brazeau, Nicholas F., additional, Msellem, Mwinyi, additional, Ngasala, Billy E., additional, Aydemir, Ozkan, additional, Goel, Varun, additional, Niaré, Karamoko, additional, Giesbrecht, David J., additional, Popkin-Hall, Zachary R., additional, Hennelly, Christopher M., additional, Park, Zackary, additional, Moormann, Ann M., additional, Ong’echa, John Michael, additional, Verity, Robert, additional, Mohammed, Safia, additional, Shija, Shija J., additional, Mhamilawa, Lwidiko E., additional, Morris, Ulrika, additional, Mårtensson, Andreas, additional, Lin, Jessica T., additional, Björkman, Anders, additional, Juliano, Jonathan J., additional, and Bailey, Jeffrey A., additional
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- 2023
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16. The role of the major chemosensory organs in the host-seeking activity of Anopheles coluzzii(Diptera: Culicidae)
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Popkin-Hall, Zachary R and Slotman, Michel A
- Abstract
Anopheles coluzzii(Coetzee & Wilkerson) and its sibling species Anopheles gambiaes.s. (Giles) are highly anthropophilic and among the major malaria vectors in sub-Saharan Africa. Mosquitoes use various senses to find hosts, but rely primarily on olfaction. Therefore, the mosquito olfactory system has been studied extensively, including a variety of studies comparing chemosensory gene expression between An. coluzziiand its zoophilic sibling species Anopheles quadriannulatus(Theobald). These studies revealed species-specific chemosensory gene expression in the antennae and maxillary palps, which raised the question of a potential role for the palps in determining species-specific host preferences. To answer this question, we mechanically ablated the antennae, maxillary palps, and labella, and ran both control and ablated mosquitoes through a dual-port olfactometer. While we aimed to identify the organs responsible for vertebrate host choice, the ablated mosquitoes exclusively responded to human odor, so we were unable to do so. However, we were able to refine our understanding of the roles of these organs in host-seeking activation (leaving the release cage) as well as odor response (entering an odor port). As expected, the antennae are the most important organs to both behaviors: activation was roughly halved and vertebrate odor response was abolished in antennae-ablated mosquitoes. Maxillary palp ablation had little impact on activation, but reduced odor response to a similar degree as the exclusion of CO2. Finally, while labellar ablation dramatically reduced activation (probably associated with the inability to feed), it had little impact on odor response, suggesting that any labellar role in host choice is likely not olfactory.
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- 2024
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17. Strong isolation by distance and evidence of population microstructure reflect ongoing Plasmodium falciparum transmission in Zanzibar.
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Connelly, Sean V., Brazeau, Nicholas F., Msellem, Mwinyi, Ngasala, Billy E., Aydemir, Ozkan, Goel, Varun, Niaré, Karamoko, Giesbrecht, David J., Popkin-Hall, Zachary R., Hennelly, Chris, Park, Zackary, Moormann, Ann M., Ong'echa, John M., Verity, Robert, Mohammed, Safia, Shija, Shija J., Mhamilawa, Lwidiko E., Morris, Ulrika, Mårtensson, Andreas, and Lin, Jessica T.
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- 2024
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18. Malaria Species Positivity Rates Among Symptomatic Individuals Across Regions of Differing Transmission Intensities in Mainland Tanzania.
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Popkin-Hall, Zachary R, Seth, Misago D, Madebe, Rashid A, Budodo, Rule, Bakari, Catherine, Francis, Filbert, Pereus, Dativa, Giesbrecht, David J, Mandara, Celine I, Mbwambo, Daniel, Aaron, Sijenunu, Lusasi, Abdallah, Lazaro, Samwel, Bailey, Jeffrey A, Juliano, Jonathan J, and Ishengoma, Deus S
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MALARIA , *PLASMODIUM vivax , *PLASMODIUM falciparum , *SPECIES , *HEALTH facilities , *TRYPANOSOMA , *BIOSURVEILLANCE - Abstract
Background Recent data indicate that non- Plasmodium falciparum species may be more prevalent than thought in sub-Saharan Africa. Although Plasmodium malariae , Plasmodium ovale spp. and Plasmodium vivax are less severe than P. falciparum , treatment and control are more challenging, and their geographic distributions are not well characterized. Methods We randomly selected 3284 of 12 845 samples collected from cross-sectional surveys in 100 health facilities across 10 regions of Mainland Tanzania and performed quantitative real-time PCR to determine presence and parasitemia of each malaria species. Results P. falciparum was most prevalent, but P. malariae and P. ovale were found in all but 1 region, with high levels (>5%) of P. ovale in 7 regions. The highest P. malariae positivity rate was 4.5% in Mara and 8 regions had positivity rates ≥1%. We only detected 3 P. vivax infections, all in Kilimanjaro. While most nonfalciparum malaria-positive samples were coinfected with P. falciparum , 23.6% (n = 13 of 55) of P. malariae and 14.7% (n = 24 of 163) of P. ovale spp. were monoinfections. Conclusions P. falciparum remains by far the largest threat, but our data indicate that malaria elimination efforts in Tanzania will require increased surveillance and improved understanding of the biology of nonfalciparum species. [ABSTRACT FROM AUTHOR]
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- 2024
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19. Malaria species positivity rates among symptomatic individuals across regions of differing transmission intensities in Mainland Tanzania
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Popkin-Hall, Zachary R, primary, Seth, Misago D, additional, Madebe, Rashid A, additional, Budodo, Rule, additional, Bakari, Catherine, additional, Francis, Filbert, additional, Pereus, Dativa, additional, Giesbrecht, David J, additional, Mandara, Celine I, additional, Mbwambo, Daniel, additional, Aaron, Sijenunu, additional, Lazaro, Samwel, additional, Bailey, Jeffrey A, additional, Juliano, Jonathan J, additional, and Ishengoma, Deus S, additional
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- 2023
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20. Plasmodium falciparum pfhrp2 and pfhrp3 gene deletions among patients enrolled at 100 health facilities throughout Tanzania: February to July 2021
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Rogier, Eric, primary, Battle, Nastassia, additional, Bakari, Catherine, additional, Seth, Misago D., additional, Nace, Douglas, additional, Herman, Camelia, additional, Madebe, Rashid A., additional, Mandara, Celine I., additional, Lyimo, Beatus M., additional, Giesbrecht, David J., additional, Popkin-Hall, Zachary R., additional, Francis, Filbert, additional, Mbwambo, Daniel, additional, Garimo, Issa, additional, Aaron, Sijenunu, additional, Lusasi, Abdallah, additional, Molteni, Fabrizio, additional, Njau, Ritha, additional, Cunningham, Jane A., additional, Lazaro, Samwel, additional, Mohamed, Ally, additional, Juliano, Jonathan J., additional, Bailey, Jeffrey A., additional, Udhayakumar, Venkatachalam, additional, and Ishengoma, Deus S., additional
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- 2023
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21. Strong isolation by distance and evidence of population microstructure reflect ongoingPlasmodium falciparumtransmission in Zanzibar
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Connelly, Sean V., primary, Brazeau, Nicholas F., additional, Msellem, Mwinyi, additional, Ngasala, Billy E., additional, Aydemir, Ozkan, additional, Goel, Varun, additional, Niaré, Karamoko, additional, Giesbrecht, David J., additional, Popkin-Hall, Zachary R., additional, Hennelly, Christopher M., additional, Park, Zackary, additional, Moormann, Ann M., additional, Ong’echa, John Michael, additional, Verity, Robert, additional, Mohammed, Safia, additional, Shija, Shija J., additional, Mhamilawa, Lwidiko E., additional, Morris, Ulrika, additional, Mårtensson, Andreas, additional, Lin, Jessica T., additional, Björkman, Anders, additional, Juliano, Jonathan J., additional, and Bailey, Jeffrey A., additional
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- 2023
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22. The Role of the Major Chemosensory Organs in the Host-Seeking Activity of Anopheles Coluzzii
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Popkin-Hall, Zachary R., primary and Slotman, Michel A., additional
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- 2023
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23. Potential Opportunities and Challenges of Deploying Next Generation Sequencing and CRISPR-Cas Systems to Support Diagnostics and Surveillance Towards Malaria Control and Elimination in Africa
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Lyimo, Beatus M., primary, Popkin-Hall, Zachary R., additional, Giesbrecht, David J., additional, Mandara, Celine I., additional, Madebe, Rashid A., additional, Bakari, Catherine, additional, Pereus, Dativa, additional, Seth, Misago D., additional, Ngamba, Ramadhan M., additional, Mbwambo, Ruth B., additional, MacInnis, Bronwyn, additional, Mbwambo, Daniel, additional, Garimo, Issa, additional, Chacky, Frank, additional, Aaron, Sijenunu, additional, Lusasi, Abdallah, additional, Molteni, Fabrizio, additional, Njau, Ritha, additional, Cunningham, Jane A., additional, Lazaro, Samwel, additional, Mohamed, Ally, additional, Juliano, Jonathan J., additional, Bailey, Jeffrey A. , additional, and Ishengoma, Deus S., additional
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- 2022
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24. Household transmission of SARS-CoV-2 in the United States: living density, viral load, and disproportionate impact on communities of color
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Cerami, Carla, Popkin-Hall, Zachary R, Rapp, Tyler, Tompkins, Kathleen, Zhang, Haoming, Muller, Meredith S, Basham, Christopher, Whittelsey, Maureen, Chhetri, Srijana B, Smith, Judy, Litel, Christy, Lin, Kelly D, Churiwal, Mehal, Khan, Salman, Rubinstein, Rebecca, Claman, Faith, Mollan, Katie, Wohl, David, Premkumar, Lakshmanane, Powers, Kimberly A, Juliano, Jonathan J, Lin, Feng-Chang, and Lin, Jessica T
- Subjects
AcademicSubjects/MED00290 ,Major Article - Abstract
Few prospective studies of SARS-CoV-2 transmission within households have been reported from the United States, where COVID-19 cases are the highest in the world and the pandemic has had disproportionate impact on communities of color.This is a prospective observational study. Between April-October 2020, the UNC CO-HOST study enrolled 102 COVID-positive persons and 213 of their household members across the Piedmont region of North Carolina, including 45% who identified as Hispanic/Latinx or non-white. Households were enrolled a median of 6 days from onset of symptoms in the index case. Secondary cases within the household were detected either by PCR of a nasopharyngeal (NP) swab on study day 1 and weekly nasal swabs (days 7, 14, 21) thereafter, or based on seroconversion by day 28. After excluding household contacts exposed at the same time as the index case, the secondary attack rate (SAR) among susceptible household contacts was 60% (106/176, 95% CI 53%-67%). The majority of secondary cases were already infected at study enrollment (73/106), while 33 were observed during study follow-up. Despite the potential for continuous exposure and sequential transmission over time, 93% (84/90, 95% CI 86%-97%) of PCR-positive secondary cases were detected within 14 days of symptom onset in the index case, while 83% were detected within 10 days. Index cases with high NP viral load (10^6 viral copies/ul) at enrollment were more likely to transmit virus to household contacts during the study (OR 4.9, 95% CI 1.3-18 p=0.02). Furthermore, NP viral load was correlated within families (ICC=0.44, 95% CI 0.26-0.60), meaning persons in the same household were more likely to have similar viral loads, suggesting an inoculum effect. High household living density was associated with a higher risk of secondary household transmission (OR 5.8, 95% CI 1.3-55) for households with3 persons occupying6 rooms (SAR=91%, 95% CI 71-98%). Index cases who self-identified as Hispanic/Latinx or non-white were more likely to experience a high living density and transmit virus to a household member, translating into an SAR in minority households of 70%, versus 52% in white households (p=0.05).SARS-CoV-2 transmits early and often among household members. Risk for spread and subsequent disease is elevated in high-inoculum households with limited living space. Very high infection rates due to household crowding likely contribute to the increased incidence of SARS-CoV-2 infection and morbidity observed among racial and ethnic minorities in the US. Quarantine for 14 days from symptom onset of the first case in the household is appropriate to prevent onward transmission from the household. Ultimately, primary prevention through equitable distribution of effective vaccines is of paramount importance.
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- 2021
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25. Household Transmission of Severe Acute Respiratory Syndrome Coronavirus 2 in the United States: Living Density, Viral Load, and Disproportionate Impact on Communities of Color
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Cerami, Carla, primary, Popkin-Hall, Zachary R, additional, Rapp, Tyler, additional, Tompkins, Kathleen, additional, Zhang, Haoming, additional, Muller, Meredith S, additional, Basham, Christopher, additional, Whittelsey, Maureen, additional, Chhetri, Srijana B, additional, Smith, Judy, additional, Litel, Christy, additional, Lin, Kelly D, additional, Churiwal, Mehal, additional, Khan, Salman, additional, Rubinstein, Rebecca, additional, Claman, Faith, additional, Mollan, Katie, additional, Wohl, David, additional, Premkumar, Lakshmanane, additional, Powers, Kimberly A, additional, Juliano, Jonathan J, additional, Lin, Feng-Chang, additional, and Lin, Jessica T, additional
- Published
- 2021
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26. The Expression of Chemosensory Genes in Male Maxillary Palps of Anopheles coluzzii (Diptera:Culicidae) and An. quadriannulatus
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Athrey, Giridhar, Popkin-Hall, Zachary R., Takken, Willem, Slotman, Michel A., Athrey, Giridhar, Popkin-Hall, Zachary R., Takken, Willem, and Slotman, Michel A.
- Abstract
Because of its importance as a malaria vector, Anopheles coluzzii's Coetzee & Wilkerson olfactory system has been studied extensively. Among this work is a series of studies comparing the expression of chemosensory genes in olfactory organs in females and/or males of these species. These have identified species- and female-biased chemosensory gene expression patterns. However, many questions remain about the role of chemosensation in male anopheline biology. To pave the way for future work we used RNAseq to compare chemosensory gene expression in the male maxillary palps of An. coluzzii and its sibling species An. quadriannulatus Theobald. As expected, the chemosensory gene repertoire is small in the male maxillary palps. Both species express the tuning receptors Or8 and Or28 at relatively high levels. The CO2 receptor genes Gr22-Gr24 are present in both species as well, although at much lower level than in females. Additionally, several chemoreceptors are species-specific. Gr37 and Gr52 are exclusive to An. coluzzii, whereas Or9 and Gr60 were detected only in An. quadriannulatus. Furthermore, several chemosensory genes show differential expression between the two species. Finally, several Irs, Grs, and Obps that show strong differential expression in the female palps, are absent or lowly expressed in the male palps. While many questions remain about the role of chemosensation in anopheline male biology, these results suggest that the male maxillary palps could have both a sex- and species-specific role in the perception of chemical stimuli. This work may guide future studies on the role of the male maxillary palp in these species.
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- 2021
27. The Expression of Chemosensory Genes in Male Maxillary Palps of Anopheles coluzzii (Diptera: Culicidae) and An. quadriannulatus
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Athrey, Giridhar, primary, Popkin-Hall, Zachary R, additional, Takken, Willem, additional, and Slotman, Michel A, additional
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- 2021
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28. Household Transmission of Severe Acute Respiratory Syndrome Coronavirus 2 in the United States: Living Density, Viral Load, and Disproportionate Impact on Communities of Color.
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Cerami, Carla, Popkin-Hall, Zachary R, Rapp, Tyler, Tompkins, Kathleen, Zhang, Haoming, Muller, Meredith S, Basham, Christopher, Whittelsey, Maureen, Chhetri, Srijana B, Smith, Judy, Litel, Christy, Lin, Kelly D, Churiwal, Mehal, Khan, Salman, Rubinstein, Rebecca, Claman, Faith, Mollan, Katie, Wohl, David, Premkumar, Lakshmanane, and Powers, Kimberly A
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RISK assessment , *VIRAL load , *HOME accident prevention , *POLYMERASE chain reaction , *DESCRIPTIVE statistics , *CROWDS , *LONGITUDINAL method , *INFECTIOUS disease transmission , *CONFIDENCE intervals , *MINORITIES , *COVID-19 , *COVID-19 pandemic , *NEIGHBORHOOD characteristics - Abstract
Background Households are hot spots for severe acute respiratory syndrome coronavirus 2 transmission. Methods This prospective study enrolled 100 coronavirus disease 2019 (COVID-19) cases and 208 of their household members in North Carolina though October 2020, including 44% who identified as Hispanic or non-White. Households were enrolled a median of 6 days from symptom onset in the index case. Incident secondary cases within the household were detected using quantitative polymerase chain reaction of weekly nasal swabs (days 7, 14, 21) or by seroconversion at day 28. Results Excluding 73 household contacts who were PCR-positive at baseline, the secondary attack rate (SAR) among household contacts was 32% (33 of 103; 95% confidence interval [CI], 22%–44%). The majority of cases occurred by day 7, with later cases confirmed as household-acquired by viral sequencing. Infected persons in the same household had similar nasopharyngeal viral loads (intraclass correlation coefficient = 0.45; 95% CI,.23–.62). Households with secondary transmission had index cases with a median viral load that was 1.4 log10 higher than those without transmission (P =.03), as well as higher living density (more than 3 persons occupying fewer than 6 rooms; odds ratio, 3.3; 95% CI, 1.02–10.9). Minority households were more likely to experience high living density and had a higher risk of incident infection than did White households (SAR, 51% vs 19%; P =.01). Conclusions Household crowding in the context of high-inoculum infections may amplify the spread of COVID-19, potentially contributing to disproportionate impact on communities of color. [ABSTRACT FROM AUTHOR]
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- 2022
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29. The Expression of Chemosensory Genes in Male Maxillary Palps of Anopheles coluzzii(Diptera: Culicidae) and An. quadriannulatus
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Athrey, Giridhar, Popkin-Hall, Zachary R, Takken, Willem, and Slotman, Michel A
- Abstract
Because of its importance as a malaria vector, Anopheles coluzzii’s Coetzee & Wilkerson olfactory system has been studied extensively. Among this work is a series of studies comparing the expression of chemosensory genes in olfactory organs in females and/or males of these species. These have identified species- and female-biased chemosensory gene expression patterns. However, many questions remain about the role of chemosensation in male anopheline biology. To pave the way for future work we used RNAseq to compare chemosensory gene expression in the male maxillary palps of An. coluzziiand its sibling species An. quadriannulatusTheobald. As expected, the chemosensory gene repertoire is small in the male maxillary palps. Both species express the tuning receptors Or8and Or28at relatively high levels. The CO2receptor genes Gr22-Gr24are present in both species as well, although at much lower level than in females. Additionally, several chemoreceptors are species-specific. Gr37and Gr52are exclusive to An. coluzzii, whereas Or9and Gr60were detected only in An. quadriannulatus. Furthermore, several chemosensory genes show differential expression between the two species. Finally, several Irs, Grs, and Obpsthat show strong differential expression in the female palps, are absent or lowly expressed in the male palps. While many questions remain about the role of chemosensation in anopheline male biology, these results suggest that the male maxillary palps could have both a sex- and species-specific role in the perception of chemical stimuli. This work may guide future studies on the role of the male maxillary palp in these species.
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- 2021
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30. Austropurcellia acuta Popkin-Hall & Boyer, 2014, sp. nov
- Author
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Popkin-Hall, Zachary R. and Boyer, Sarah L.
- Subjects
Arthropoda ,Opiliones ,Arachnida ,Animalia ,Biodiversity ,Pettalidae ,Austropurcellia ,Austropurcellia acuta ,Taxonomy - Abstract
Austropurcellia acuta sp. nov. Figures 3���14 Diagnosis: Pettalid with relatively flat ozophores. Tergite VIII strongly bilobed, with bilobes clearly visible in both ventral and dorsal view. Lobes of tergite VIII lacking ornamentation dorsally and being only partially ornamented ventrally. Prominent scopula emerging from posterior margin of anal plate. Adenostyle thin and blade-like, with a wide base. Distinguished from A. capricornia by lobes of tergite VIII without ornamentation in dorsal view and with swollen appearance. Description: Length of male holotype (2.1 mm) about twice as long as its widest point (1.2 mm) in posterior third of prosoma, and about 3 times as long as width across ozophores (0.8 mm) (Figs. 3, 4 A ��� B). Body with most of its surface showing a tuberculate-granular microstructure (Fig. 4). Posterior part of dorsal scutum strongly bilobed, with scopula of anal plate easily visible in dorsal view (Figs. 3 A, 4 B). A pair of prominent depressions, anterior to ozophores in both male and female specimens, consisting of an indentation in the dorsal scutum with small tubercular structures clustered together (Figs. 4 B, 6, 9A, 12 A, 13). Transverse opisthosomal sulci distinct by lack of granulation (Figs. 4 A ��� B, 9 A ��� B, 12 A ��� B). Ozophores quite flat in relation to dorsal scutum (Figs. 3 A, C, 4 B, 5 B, 9 A, 12 A), positioned at a 45 �� angle relative to the walking plane as typical in pettalids. Coxae of legs I and II mobile. Coxae of remaining legs fixed. Male coxae II ��� IV meeting in the midline (Figs. 5 C, 10 C). Male gonostome small, subtriangular, wider than long, bordered on posterior margin by first opisthosomal sternite; male gonostome shorter than length of seam of contact of left and right coxae IV (Fig. 5 C, 10 C). Female coxae II meeting in midline (Fig. 12 D). Female gonostome roughly round in shape, with edges of coxae of leg IV and first opisthosomal sternite forming an elevated collar at posterior margin of opening (Fig. 12 D). Spiracle elongate and C-shaped, with slightly recurved edges as found in ���open circle��� type of Giribet and Boyer (2002). Narrow band of fine granules separating spiracle from main granules and tubercles (Fig. 5 A, 10 A). Ventral opisthosomal region without modifications or glandular pores (Figs. 4 A, 9 B). Anal region of ���pettalid type��� (Giribet & Boyer 2002) with tergite IX laterally covering sternite 9 and clearly meeting sternite 8 (Fig. 4 C, 9 D). Male tergite VIII strongly bilobed, with distinct lack of ornamentation in most distal area of each lobe, and with setae emerging medially from each lobe (Figs. 4 C, 9 D). Anal plate lacking in ornamentation in posterior half (Figs. 4 C, 9 D). Very prominent scopula emerging posteriorly and extending to posterior margin of tergite VIII (Figs. 4 C, 9 D). Anal pore not visible. Chelicerae (Figs. 7 G ��� H, 11 A) short and relatively robust. Proximal article of chelicerae with dorsal crest [���dorsal ridge��� of Hansen & S��rensen (1904) and Forster (1948); ���dorsal transverse crest��� of Juberthie (1970)], without ventral process. Median article with an apodeme. Two types of dentition, as typical in pettalids (Figs. 7 F, 11 A). Measurements from male holotype of chelicera articles from proximal to distal (given in mm): 0.46, 0.91, 0.31. Palp (Figs. 7 E, 11 B) with a prominent ventral process on trochanter. Measurements from paratype male of palp articles from proximal to distal (given in mm): 0.29, 0.37, 0.24, 0.28, 0.34. Legs with all claws smooth, without ventral dentition or lateral pegs. Metatarsus I heavily ornamented in basal half but not in distal half, leading to the appearance of a ���cuff���. Tarsus I smooth (Figs. 7 A, 11 C). Metatarsus II heavily ornamented in basal third but not in distal two thirds. Tarsus II smooth (Figs. 7 B, 11 D). Male leg III and both male and female leg IV with ornamented metatarsus and smooth tarsus (Figs. 7 C ��� D, 11 E ��� G). Ventral side of tarsus I with solea (Figs. 7 A, 11 C). Male tarsus IV fully bisegmented (Figs. 7 D, 11 F). Adenostyle with a thin claw on a wide base. Prominent pore visible on claw of adenostyle. Adenostyle projecting up and slightly distally (Figs. 7 D, 11 F). Measurements from male holotype of leg articles from proximal to distal (given in mm): leg I [femur damaged] 0.65, 0.27, 0.46, 0.16, 0.47; leg II [femur damaged] 0.54, 0.18, 0.33, 0.17, 0.40; leg III [femur damaged] 0.47, 0.21, 0.35, 0.19, 0.39; leg IV 0.18, 0.50, 0.26, 0.38, 0.15, 0.44. Ovipositor (Fig. 14) composed of two apical lobes and 29 circular articles. Apical lobes carrying several setae (increasing in length towards the tip); a long terminal seta rising from a small socket at end of each lobe. Sensitive processes each carrying many small microtrichia on distolateral area of each terminal lobe. Spermatopositor small, typical of pettalids (Fig. 8). Dorsal surface with a single, V-shaped series of very long microtrichia, 7 on the left and 8 on the right; apical lobe with 6 long microtrichia; ventral surface with 4 microtrichia. Gonopore complex with two movable fingers in the shape of pronounced hooks bent outward (Fig. 8 B). Type material: Australia, Queensland, Mapleton Forest Reserve, Bonyee Walk, off Mapleton Forest Drive (ArPTC# 68); 26 �� 33 ��� 28 ���S, 152 �� 51 ��� 58 ���E; Coll. M.G. Rix, D. Harms, May 1, 2010; ♂ holotype, MCZ 30460 (ex MCZ 134701). Paratypes: Australia, Queensland, Mapleton Forest Reserve, Bonyee Walk, off Mapleton Forest Drive (ArPTC# 68); 26 �� 33 ��� 28 ���S, 152 �� 51 ��� 58 ���E; Coll. M.G. Rix, D. Harms, May 1, 2010; 1 ♂ and 1 ♀; MCZ 30461 (ex MCZ 134701). Other material: Australia, Queensland, Mapleton Forest Reserve, Bonyee Walk, off Mapleton Forest Drive (ArPTC# 68); 26 �� 33 ��� 28 ���S, 152 �� 51 ��� 58 ���E; Coll. M.G. Rix, D. Harms, May 1, 2010; 1 ♂; MCZ 134701 (DNA 106876). Australia, Queensland, Kroombit Tops, SSW Calliope, Beauty Spot 98; 24 �� 22 ���S, 150 �� 59 ���E, 860 m; Coll. G. Monteith, Sep. 29, 1985; 2 ♂ and 2 juveniles; QM S 1743. Etymology: The specific epithet ��� acuta ��� is a Latin adjective meaning ���pointed��� or ���sharpened��� and refers to the very sharp tapering of the posterior end of the body relative to other Austropurcellia., Published as part of Popkin-Hall, Zachary R. & Boyer, Sarah L., 2014, New species of mite harvestmen from southeast Queensland, Australia greatly extend the known distribution of the genus Austropurcellia (Arachnida, Opiliones, Cyphophthalmi), pp. 517-541 in Zootaxa 3827 (4) on pages 525-529, DOI: 10.11646/zootaxa.3827.4.5, http://zenodo.org/record/251164, {"references":["Giribet, G. & Boyer, S. L. (2002) A cladistic analysis of the cyphophthalmid genera (Opiliones, Cyphophthalmi). Journal of Arachnology, 30, 110 - 128. http: // dx. doi. org / 10.1636 / 0161 - 8202 (2002) 030 [0110: acaotc] 2.0. co; 2","Hansen, H. J. & Sorensen, W. (1904) On two orders of Arachnida: Opiliones, especially the suborder Cyphophthalmi, and Ricinulei, namely the family Cryptostemmatoidae. Cambridge University Press, Cambridge, 182 pp.","Forster, R. R. (1948) The sub-order Cyphophthalmi Simon in New Zealand. Dominion Museum Records in Entomology, 1, 79 - 119.","Juberthie, C. (1970) Les genres d'opilions Sironinae (Cyphophthalmes). Bulletin du Museum National d'Histoire Naturelle, 41, 1371 - 1390."]}
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- 2014
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31. Austropurcellia superbensis Popkin-Hall & Boyer, 2014, sp. nov
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Popkin-Hall, Zachary R. and Boyer, Sarah L.
- Subjects
Austropurcellia superbensis ,Arthropoda ,Opiliones ,Arachnida ,Animalia ,Biodiversity ,Pettalidae ,Austropurcellia ,Taxonomy - Abstract
Austropurcellia superbensis sp. nov. Figures 20 ��� 22 Diagnosis: Pettalid with relatively flat ozophores. Tergite VIII slightly but visibly bilobed. Adenostyle thin and blade-like, with small, wide, rounded distal projection. Distinguished from other Southeast Queensland Austropurcellia by its rounded posterior and by scopula emerging from center of anal plate. Description: Male holotype (2.2 mm) about twice as long as its widest point (1.3 mm) in posterior third of prosoma, and about 3 times as long as width across ozophores (0.8 mm) (Fig. 20 A ��� B). Body with most of surface showing a tuberculate-granular microstructure (Fig. 20). Posterior margin of dorsal scutum distinctly bilobed (Fig. 20 C). Transverse opisthosomal sulci distinct by lack of granulation. Sulci becoming more distinct posteriorly (Fig. 20 B). Ozophores relatively flat (Fig. 20 A, 21 B), positioned at a 45 �� angle relative to the walking plane as typical in pettalids. Coxae of legs I and II mobile. Coxae of remaining legs fixed. Male coxae II ��� IV meeting in midline (Fig. 21 A). Male gonostome small, subtriangular, wider than long, bordered on posterior margin by first opisthosomal sternite; male gonostome shorter than length of seam of contact of left and right coxae IV (Figs. 20 B, 21 A). No female specimens available for examination. Spiracle of ���open circle��� type of Boyer and Giribet (2002). Narrow band of granules separating spiracle from main granules and tubercles (Fig. 21 C). Ventral opisthosomal region without modifications or glandular pores (Fig. 20 B). Anal region of ���pettalid type��� (Giribet & Boyer 2002) with tergite IX laterally covering sternite 9 and clearly meeting sternite 8 (Fig. 20 D). Tergite VIII distinctly bilobed (Fig. 20 D). Anal plate seemingly unornamented and largely obscured by scopula (Fig. 20 D). Large scopula emerging in all directions in a ���starburst��� form from center of anal plate, extending to anterior margin of tergite VIII; scopular appearance possibly reflecting an artifact of preservation. Glandular pore present just below anal plate. Chelicerae (Fig. 22 E) short and relatively robust. Proximal article of chelicerae with dorsal crest, without ventral process. Two types of dentition, as typical in pettalids. Measurements from male holotype of chelicera articles from proximal to distal (given in mm): 0.57, 0.92, 0.30. Palp (Fig. 22) with a prominent ventral process on trochanter. Measurements from male holotype of palp articles from proximal to distal (given in mm): 0.30, 0.38, 0.23, 0.29, 0.31. Legs with all claws smooth, without ventral dentition or lateral pegs. Legs I and II with partially ornamented metatarsus and smooth tarsus (Fig. 22 A ��� B). Legs III and IV with ornamented metatarsus and smooth tarsus (Fig. 22 C ��� D). Ventral side of tarsus I without solea (Fig. 22 A). Male tarsus IV fully bisegmented (Fig. 22 D). Adenostyle with a thin claw and a small, but wide, rounded base (Fig. 22 D). Adenostyle projecting up at a 45 �� angle (Fig. 22 D). Measurements from male holotype of leg articles from proximal to distal (given in mm): leg I 0.19, 0.63, 0.25, 0.47, 0.20, 0.47; leg II 0.20, 0.49, 0.22, 0.38, 0.16, 0.40; leg III [femur damaged], 0.38, 0.21, 0.34, 0.19, 0.35; leg IV 0.26, 0.49, 0.24, 0.42, 0.16, 0.41. Type material: Australia, Queensland, Mount Superbus summit, 30 km SW Boonah; 28 �� 14 ���S, 152 �� 28 ���E 1300 m; Coll. G. Monteith, G. Thompson, H. Janetzki, Feb. 9, 1990; ♂ holotype; QM S 35939. Etymology: The specific epithet superbensis, a latinized adjective, refers to the type locality, Mount Superbus in Southeastern Queensland., Published as part of Popkin-Hall, Zachary R. & Boyer, Sarah L., 2014, New species of mite harvestmen from southeast Queensland, Australia greatly extend the known distribution of the genus Austropurcellia (Arachnida, Opiliones, Cyphophthalmi), pp. 517-541 in Zootaxa 3827 (4) on pages 533-535, DOI: 10.11646/zootaxa.3827.4.5, http://zenodo.org/record/251164, {"references":["Giribet, G. & Boyer, S. L. (2002) A cladistic analysis of the cyphophthalmid genera (Opiliones, Cyphophthalmi). Journal of Arachnology, 30, 110 - 128. http: // dx. doi. org / 10.1636 / 0161 - 8202 (2002) 030 [0110: acaotc] 2.0. co; 2"]}
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- 2014
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32. New species of mite harvestmen from southeast Queensland, Australia greatly extend the known distribution of the genus Austropurcellia (Arachnida, Opiliones, Cyphophthalmi)
- Author
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Popkin-Hall, Zachary R. and Boyer, Sarah L.
- Subjects
Arthropoda ,Opiliones ,Arachnida ,Animalia ,Biodiversity ,Pettalidae ,Taxonomy - Abstract
Popkin-Hall, Zachary R., Boyer, Sarah L. (2014): New species of mite harvestmen from southeast Queensland, Australia greatly extend the known distribution of the genus Austropurcellia (Arachnida, Opiliones, Cyphophthalmi). Zootaxa 3827 (4): 517-541, DOI: http://dx.doi.org/10.11646/zootaxa.3827.4.5
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- 2014
33. Austropurcellia barbata Popkin-Hall & Boyer, 2014, sp. nov
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Popkin-Hall, Zachary R. and Boyer, Sarah L.
- Subjects
Arthropoda ,Opiliones ,Arachnida ,Austropurcellia barbata ,Animalia ,Biodiversity ,Pettalidae ,Austropurcellia ,Taxonomy - Abstract
Austropurcellia barbata sp. nov. Figures 15 ��� 19 Diagnosis: Pettalid with relatively tall and conical ozophores. Tergite VIII strongly bilobed, with lobes clearly visible in both ventral and dorsal view. Lobes of tergite VIII ornamented both dorsally and ventrally. Narrow scopula emerging from anal plate. Adenostyle thin and blade-like with a wide base. Distinguished from A. acuta sp. nov. by larger body (0.5 mm longer), larger and taller ozophores, narrower and more tapered central scopula, and presence of ornamentation on posterior areas of anal plate and lobes of tergite VIII. Description: Male holotype (2.5 mm) about twice as long as its widest point (1.4 mm) in posterior third of prosoma, and about 3 times as long as width across ozophores (0.9 mm) (Figs. 15, 16 A ��� B). Body with most of surface showing a tuberculate-granular microstructure (Fig. 16). Posterior end of dorsal scutum strongly bilobed (Fig. 16 C). Transverse opisthosomal sulci distinct by lack of granulation (Figs. 16 A ��� B). Sulci becoming more distinct posteriorly (Figs. 16 C ��� D). Ozophores relatively tall and conical (Figs. 15 A, 15 C, 16 A, 17 B), positioned at a 45 �� angle relative to the walking plane as typical in pettalids. Coxae of legs I and II mobile. Coxae of remaining legs fixed. Male coxae II ��� IV meeting in midline (Fig. 16 B, 17 C). Male gonostome small, subtriangular, wider than long, bordered on posterior margin by first opisthosomal sternite; male gonostome shorter than length of seam of contact of left and right coxae IV (Fig. 16 B, 17 C). No female specimens available for examination. Spiracle round and C-shaped, with slightly recurved edges as found in ���open circle��� type of Giribet and Boyer (2002) (Fig. 17 A). Ventral opisthosomal region without modifications or glandular pores (Fig. 16 B). Anal region of ���pettalid type��� (Giribet & Boyer 2002) with tergite IX laterally covering sternite 9 and clearly meeting sternite 8 (Fig. 16 D). Male tergite VIII strongly bilobed, with some longer hairs emerging from medial surfaces; lobes ornamented both dorsally and ventrally (Fig. 16 C ��� D). Anal plate ornamented over entire surface (Fig. 16 D). Thin scopula emerging and tapering posteriorly to posterior margin of tergite VIII and to setae emerging medially from each lobe. Glandular pore not visible (Fig. 16 D). Chelicerae (Fig. 18 E) short and relatively robust. Proximal article of chelicerae with dorsal crest, without ventral process. Median article of chelicerae with very prominent apodeme. Measurements from male holotype of chelicera articles from proximal to distal (given in mm): 0.65, 0.83, 0.30. Palp (Fig. 18 F) with a prominent ventral process on trochanter. Measurements from male holotype of palp articles from proximal to distal (given in mm): 0.26, 0.39, 0.23, 0.32, 0.31. Legs with all claws smooth, without ventral dentition or lateral pegs (Fig. 18 A ��� D). Legs I and II with metatarsus ornamented in proximal half and smooth in distal half, starkly demarcated and resulting in the appearance of a ���cuff��� (Fig. 18 A ��� B). Legs I and II with smooth tarsus (Fig. 18 A ��� B). Legs III and IV with ornamented metatarsus and smooth tarsus (Fig. 18 C ��� D). Ventral side of tarsus I with solea (Fig. 18 A). Male tarsus IV fully bisegmented (Fig. 18 D). Adenostyle with a thin claw on a wide base. Adenostyle projecting up and slightly distally (Fig. 18 D). Measurements from male holotype of leg articles from proximal to distal (given in mm): leg I 0.17, 0.58, 0.23, 0.45, 0.21, 0.48; leg II 0.19, 0.56, 0.24, 0.46, 0.20, 0.47; leg III 0.18, 0.44, 0.19, 0.31, 0.18, 0.38; leg IV 0.27, 0.58, 0.23, 0.46, 0.18, 0.46. Spermatopositor small, typical of pettalids (Figs. 19). Dorsal surface with a single, V-shaped series of very long microtrichia, 7 on left and 8 on right side (a single spermatopositor examined); apical lobe with 6 long microtrichia; ventral surface with 4 microtrichia. Gonopore complex with two movable fingers in the shape of pronounced hooks pointing outward (Fig. 19 B). No females available for examination. Type material: Australia, Queensland, Lobster Creek, Conondale National Park; 26 �� 40 ���S, 152 �� 39 ���E, 200 m; Coll. D.E. Walter, Sep. 20, 1995; ♂ holotype; MCZ IZ 98682. Paratypes: Australia, Queensland, Lobster Creek, Conondale National Park; 26 �� 40 ���S, 152 �� 39 ���E, 200 m; Coll. D.E. Walter, Sep. 20, 1995; 3 ♂; MCZ IZ 30462 (ex MCZ 98682). Etymology: The specific epithet barbata is a Latin adjective meaning ���bearded��� and refers to the whisker-like appearance of the scopula., Published as part of Popkin-Hall, Zachary R. & Boyer, Sarah L., 2014, New species of mite harvestmen from southeast Queensland, Australia greatly extend the known distribution of the genus Austropurcellia (Arachnida, Opiliones, Cyphophthalmi), pp. 517-541 in Zootaxa 3827 (4) on pages 529-532, DOI: 10.11646/zootaxa.3827.4.5, http://zenodo.org/record/251164, {"references":["Giribet, G. & Boyer, S. L. (2002) A cladistic analysis of the cyphophthalmid genera (Opiliones, Cyphophthalmi). Journal of Arachnology, 30, 110 - 128. http: // dx. doi. org / 10.1636 / 0161 - 8202 (2002) 030 [0110: acaotc] 2.0. co; 2"]}
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- 2014
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34. Austropurcellia
- Author
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Popkin-Hall, Zachary R. and Boyer, Sarah L.
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Arthropoda ,Opiliones ,Arachnida ,Animalia ,Biodiversity ,Pettalidae ,Austropurcellia ,Taxonomy - Abstract
Austropurcellia sp. Material examined: Australia, Southeast Queensland, Mary Cairncross Park, Maleny; Coll. H.C. Proctor Feb. ��� March 2001; 1 ♀, 2 juveniles; MCZ IZ 98678. Coordinates on specimen vial are given as 26 �� 47 ���S, 152 �� 11 ���E; however, Mary Cairncross Scenic Reserve is located at approximately 26 �� 47 ���S, 152 �� 53 ���E; we suspect a typo in longitude and our map (Fig. 1) reflects the estimated coordinates rather than the recorded coordinates. Australia, Southeast Queensland, Peters Creek, Conondale National Park; 26 �� 41 ���S, 152 �� 36 ���E; Coll. D.E. Walter Mar. 17, 2001; 1 juvenile; MCZ IZ 98680., Published as part of Popkin-Hall, Zachary R. & Boyer, Sarah L., 2014, New species of mite harvestmen from southeast Queensland, Australia greatly extend the known distribution of the genus Austropurcellia (Arachnida, Opiliones, Cyphophthalmi), pp. 517-541 in Zootaxa 3827 (4) on page 536, DOI: 10.11646/zootaxa.3827.4.5, http://zenodo.org/record/251164
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- 2014
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35. Increasing outdoor host-seeking in Anopheles gambiae over 6 years of vector control on Bioko Island
- Author
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Meyers, Jacob I., primary, Pathikonda, Sharmila, additional, Popkin-Hall, Zachary R., additional, Medeiros, Matthew C., additional, Fuseini, Godwin, additional, Matias, Abrahan, additional, Garcia, Guillermo, additional, Overgaard, Hans J., additional, Kulkarni, Vani, additional, Reddy, Vamsi P., additional, Schwabe, Christopher, additional, Lines, Jo, additional, Kleinschmidt, Immo, additional, and Slotman, Michel A., additional
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- 2016
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36. Phylogeny and biogeography of the mite harvestmen (Arachnida : Opiliones : Cyphophthalmi) of Queensland, Australia, with a description of six new species from the rainforests of the Wet Tropics
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Boyer, Sarah L., primary, Baker, Caitlin M., additional, Popkin-Hall, Zachary R., additional, Laukó, Domokos I., additional, Wiesner, Hannah A., additional, and Quay, Rachel H., additional
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- 2015
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37. New species of mite harvestmen from southeast Queensland, Australia greatly extend the known distribution of the genus Austropurcellia (Arachnida, Opiliones, Cyphophthalmi)
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POPKIN-HALL, ZACHARY R., primary and BOYER, SARAH L., additional
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- 2014
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38. New species of Austropurcellia, cryptic short-range endemic mite harvestmen (Arachnida, Opiliones, Cyphophthalmi) from Australia's Wet Tropics biodiversity hotspot.
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Jay, Katya R., Popkin-Hall, Zachary R., Coblens, Michelle J., Oberski, Jill T., Sharma, Prashant P., and Boyer, Sarah L.
- Subjects
- *
OPILIONES , *CLASSIFICATION of invertebrates , *ZOOGEOGRAPHY , *FOREST biodiversity ,AUSTRALIAN rainforests ,WET Tropics of Queensland World Heritage Area (Qld.) - Abstract
The genus Austropurcellia is a lineage of tiny leaf-litter arachnids that inhabit tropical rainforests throughout the eastern coast of Queensland, Australia. The majority of their diversity is found within the Wet Tropics rainforests of northeast Queensland, an area known for its exceptionally high levels of biodiversity and endemism. Studying the biogeographic history of limited-dispersal invertebrates in the Wet Tropics can provide insight into the role of climatic changes such as rainforest contraction in shaping rainforest biodiversity patterns. Here we describe six new species of mite harvestmen from the Wet Tropics rainforests, identified using morphological data, and discuss the biogeography of Austropurcellia with distributions of all known species. With this taxonomic contribution, the majority of the known diversity of the genus has been documented. [ABSTRACT FROM AUTHOR]
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- 2016
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39. Diversity, abundance of anopheline species, and malaria transmission dynamics in high-altitude areas of western Cameroon.
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Kiam BC, Tuedom Bouopda AG, Ibrahima I, White SJ, Tchuenkam PK, Popkin-Hall ZR, Mbouh M, Mbida Mbida JA, Nanssong CT, Abate LM, Onguene CJ, Fotso Tumamo B, Sadler JM, Parr JB, Lin JT, Juliano JJ, Mbulli IA, Dinglasan RR, and Nsango SE
- Abstract
Background: Assessing vector bionomics is crucial to improving vector control strategies. Several entomological studies have been conducted to describe malaria transmission in different eco-epidemiological settings in Cameroon; knowledge gaps persist, particularly in highland areas. This study aimed to characterize malaria vectors in three localities along an altitudinal gradient in the western region: Santchou (700 m), Dschang (1400 m), and Penka Michel (1500 m)., Methods: Human landing catches were conducted from May to June 2023 from 6:00 pm to 9:00 am. Mosquitoes were sorted into genera, and all Anopheles species were identified using morphological taxonomic keys and species-specific Polymerase Chain reaction (PCR). Entomological indicators were assessed including species composition and abundance, biting behavior, infection rate, and entomological inoculation rate (EIR). Genomic DNA from the head and thoraces were tested for Plasmodium infection by real-time PCR., Results: 2,835 Anopheles mosquitoes were identified, including An. gambiae, An. coluzzii, An. funestus, An. leesoni, An. nili, and An. ziemanni , with An. gambiae being the most prevalent at all sites. The human-biting rate of An. gambiae s.l. was significantly higher (p-value < 0.001) in Penka Michel compared to Santchou and Dschang (45.25 b/h/n vs 3.1 b/h/n and 0.41 b/h/n), and appears to be the most infected vector, and infectious vector distribution is highly focal, with entomological inoculation rates 13-fold higher in Penka Michel compared to Santchou (1.11 vs 0.08ibites/human/night). P. falciparum was the dominant malaria parasite (67% at Santchou, 62% at Penka Michel), but P. malariae (30%) and P. ovale (1.21%) infections were also detected., Conclusion: The study highlights a difference in mosquito composition and host-seeking behavior with altitude and the need for continued surveillance to monitor vector populations and prevent potential malaria outbreaks in these highland areas., Competing Interests: Additional Declarations: No competing interests reported. Conflicts of interests The authors declare no competing interests. The findings and conclusions expressed herein are those of the authors and do not necessarily represent the official position of the NIAID or NIH.
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- 2025
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40. Population genomics of Plasmodium ovale species in sub-Saharan Africa.
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Carey-Ewend K, Popkin-Hall ZR, Simkin A, Muller M, Hennelly C, He W, Moser KA, Gaither C, Niaré K, Aghakanian F, Feleke S, Brhane BG, Phanzu F, Mwandagalirwa K, Aydemir O, Sutherland CJ, Ishengoma DS, Ali IM, Ngasala B, Kalonji A, Tshefu A, Parr JB, Bailey JA, Juliano JJ, and Lin JT
- Abstract
Plasmodium ovale curtisi ( Poc) and Plasmodium ovale wallikeri ( Pow ) are relapsing malaria parasites endemic to Africa and Asia that were previously thought to represent a single species. Amid increasing detection of ovale malaria in sub-Saharan Africa, we performed a population genomic study of both species across the continent. We conducted whole-genome sequencing of 25 isolates from Central and East Africa and analyzed them alongside 20 previously published African genomes. Isolates were predominantly monoclonal (43/45), with their genetic similarity aligning with geography. Pow showed lower average nucleotide diversity (1.8×10
-4 ) across the genome compared to Poc (3.0×10-4 ) (p < 0.0001). Signatures of selective sweeps involving the dihydrofolate reductase gene were found in both species, as were signs of balancing selection at the merozoite surface protein 1 gene. Differences in the nucleotide diversity of Poc and Pow may reflect unique demographic history, even as similar selective forces facilitate their resilience to malaria control interventions., Competing Interests: Competing Interests: J.B.P. reports research support from Gilead Sciences, non-financial support from Abbott Laboratories, and consulting for Zymeron Corporation, all outside the scope of this study. The remaining authors declare no competing interests.- Published
- 2024
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41. Population Genomics of Plasmodium malariae from Four African Countries.
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Popkin-Hall ZR, Carey-Ewend K, Aghakhanian F, Oriero EC, Seth MD, Kashamuka MM, Ngasala B, Ali IM, Mukomena ES, Mandara CI, Kharabora O, Sendor R, Simkin A, Amambua-Ngwa A, Tshefu A, Fola AA, Ishengoma DS, Bailey JA, Parr JB, Lin JT, and Juliano JJ
- Abstract
Plasmodium malariae is geographically widespread but neglected and may become more prevalent as P. falciparum declines. We completed the largest genomic study of African P. malariae to-date by performing hybrid capture and sequencing of 77 isolates from Cameroon (n=7), the Democratic Republic of the Congo (n=16), Nigeria (n=4), and Tanzania (n=50) collected between 2015 and 2021. There is no evidence of geographic population structure. Nucleotide diversity was significantly lower than in co-localized P. falciparum isolates, while linkage disequilibrium was significantly higher. Genome-wide selection scans identified no erythrocyte invasion ligands or antimalarial resistance orthologs as top hits; however, targeted analyses of these loci revealed evidence of selective sweeps around four erythrocyte invasion ligands and six antimalarial resistance orthologs. Demographic inference modeling suggests that African P. malariae is recovering from a bottleneck. Altogether, these results suggest that P. malariae is genomically atypical among human Plasmodium spp. and panmictic in Africa., Competing Interests: Competing interests: JBP reports research support from Gilead Sciences, non-financial support from Abbott Laboratories, and consulting for Zymeron Corporation, all outside the scope of the current manuscript.
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- 2024
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42. High-Throughput Genotyping of Plasmodium vivax in the Peruvian Amazon via Molecular Inversion Probes.
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Popkin-Hall ZR, Niaré K, Crudale R, Simkin A, Fola AA, Sanchez JF, Pannebaker DL, Giesbrecht DJ, Kim IE, Aydemir Ö, Bailey JA, Valdivia HO, and Juliano JJ
- Abstract
Plasmodium vivax transmission occurs throughout the tropics and is an emerging threat in areas of Plasmodium falciparum decline, causing relapse infections that complicate treatment and control. Targeted sequencing for P. falciparum has been widely deployed to detect population structure and the geographic spread of antimalarial and diagnostic resistance. However, there are fewer such tools for P. vivax . Leveraging global variation data, we designed four molecular inversion probe (MIP) genotyping panels targeting geographically differentiating SNPs, neutral SNPs, putative antimalarial resistance genes, and vaccine candidate genes. We deployed these MIP panels on 866 infections from the Peruvian Amazon and identified transmission networks with clonality (IBD>0.99), copy number variation in Pvdbp and multiple Pvrbps , fixation of putative antimalarial resistance, and balancing selection in 13 vaccine candidate genes. Our MIP panels are the broadest genotyping panel currently available and are poised for successful deployment in other regions of P. vivax transmission.
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- 2024
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43. Strong isolation by distance and evidence of population microstructure reflect ongoing Plasmodium falciparum transmission in Zanzibar.
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Connelly SV, Brazeau NF, Msellem M, Ngasala BE, Aydemir Ö, Goel V, Niaré K, Giesbrecht DJ, Popkin-Hall ZR, Hennelly CM, Park Z, Moormann AM, Ong'echa JM, Verity R, Mohammed S, Shija SJ, Mhamilawa LE, Morris U, Mårtensson A, Lin JT, Björkman A, Juliano JJ, and Bailey JA
- Abstract
The Zanzibar archipelago of Tanzania has become a low-transmission area for Plasmodium falciparum. Despite being considered an area of pre-elimination for years, achieving elimination has been difficult, likely due to a combination of imported infections from mainland Tanzania, and continued local transmission. To shed light on these sources of transmission, we applied highly multiplexed genotyping utilizing molecular inversion probes to characterize the genetic relatedness of 282 P. falciparum isolates collected across Zanzibar and in Bagamoyo District on the coastal mainland from 2016-2018. Overall, parasite populations on the coastal mainland and Zanzibar archipelago remain highly related. However, parasite isolates from Zanzibar exhibit population microstructure due to rapid decay of parasite relatedness over very short distances. This, along with highly related pairs within shehias , suggests ongoing low level local transmission. We also identified highly related parasites across shehias that reflect human mobility on the main island of Unguja and identified a cluster of highly related parasites, suggestive of an outbreak, in the Micheweni district on Pemba island. Parasites in asymptomatic infections demonstrated higher complexity of infection than those in symptomatic infections, but have similar core genomes. Our data support importation as a main source of genetic diversity and contribution to the parasite population on Zanzibar, but they also show local outbreak clusters where targeted interventions are essential to block local transmission. These results highlight the need for preventive measures against imported malaria and enhanced control measures in areas that remain receptive for malaria reemergence due to susceptible hosts and competent vectors., Competing Interests: COMPETING INTERESTS The authors have no competing interests to declare.
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- 2024
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44. Genetic polymorphism and evidence of signatures of selection in the Plasmodium falciparum circumsporozoite protein gene in Tanzanian regions with different malaria endemicity.
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Lyimo BM, Bakari C, Popkin-Hall ZR, Giesbrecht DJ, Seth MD, Pereus D, Moshi R, Boniface R, Mandara CI, Madebe R, Juliano JJ, Bailey JA, and Ishengoma DS
- Abstract
Background: In 2021 and 2023, the World Health Organization approved RTS, S/AS01 and R21/Matrix M malaria vaccines, respectively, for routine immunization of children in African countries with moderate to high transmission. These vaccines are made of Plasmodium falciparum circumsporozoite protein ( Pfcsp) but polymorphisms in this gene raises concerns regarding strain-specific responses and the long-term efficacy of these vaccines. This study assessed the Pfcsp genetic diversity, population structure and signatures of selection among parasites from areas of different malaria transmission in mainland Tanzania, to generate baseline data before the introduction of the malaria vaccines in the country., Methods: The analysis involved 589 whole genome sequences generated by and as part of the MalariaGEN Community Project. The samples were collected between 2013 and January 2015 from five regions of mainland Tanzania: Morogoro and Tanga (Muheza) (moderate transmission areas), and Kagera (Muleba), Lindi (Nachingwea), and Kigoma (Ujiji) (high transmission areas). Wright's inbreeding coefficient (F
ws ), Wright's fixation index (FST ), principal component analysis, nucleotide diversity, and Tajima's D were used to assess within-host parasite diversity, population structure and natural selection., Results: Based on Fws (< 0.95), there was high polyclonality (ranged from 69.23% in Nachingwea to 56.9% in Muheza). No population structure was detected in the Pfcsp gene in the five regions (mean FST = 0.0068). The average nucleotide diversity (π), nucleotide differentiation (K) and haplotype diversity (Hd) in the five regions were 4.19, 0.973 and 0.0035, respectively. The C-terminal region of Pfcsp showed high nucleotide diversity at Th2R and Th3R regions. Positive values for the Tajima's D were observed in the Th2R and Th3R regions consistent with balancing selection. The Pfcsp C-terminal sequences had 50 different haplotypes (H_1 to H_50) and only 2% of sequences matched the 3D7 strain haplotype (H_50)., Conclusions: The findings demonstrate high diversity of the Pfcsp gene with limited population differentiation. The Pfcsp gene showed positive Tajima's D values for parasite populations, consistent with balancing selection for variants within Th2R and Th3R regions. This data is consistent with other studies conducted across Africa and worldwide, which demonstrate low 3D7 haplotypes and little population structure. Therefore, additional research is warranted, incorporating other regions and more recent data to comprehensively assess trends in genetic diversity within this important gene. Such insights will inform the choice of alleles to be included in the future vaccines., Competing Interests: Competing Financial Interests: The authors declare that they have no known competing financial interests or personal relationships that could have influenced the work reported in this paper.- Published
- 2024
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45. Malaria species prevalence among asymptomatic individuals in four regions of Mainland Tanzania.
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Popkin Hall ZR, Seth MD, Madebe RA, Budodo R, Bakari C, Francis F, Pereus D, Giesbrecht DJ, Mandara CI, Mbwambo D, Aaron S, Lusasi A, Lazaro S, Bailey JA, Juliano JJ, Gutman JR, and Ishengoma DS
- Abstract
Recent studies point to the need to incorporate non-falciparum species detection into malaria surveillance activities in sub-Saharan Africa, where 95% of malaria cases occur. Although Plasmodium falciparum infection is typically more severe, diagnosis, treatment, and control for P. malariae , P. ovale spp., and P. vivax may be more challenging. The prevalence of these species throughout sub-Saharan Africa is poorly defined. Tanzania has geographically heterogeneous transmission levels but an overall high malaria burden. In order to estimate the prevalence of malaria species in Mainland Tanzania, 1,428 samples were randomly selected from 6,005 asymptomatic isolates collected in cross-sectional community surveys across four regions and analyzed via qPCR to detect each Plasmodium species. P. falciparum was most prevalent, with P. malariae and P. ovale spp. detected at lower prevalence (<5%) in all four regions. P. vivax was not detected. Malaria elimination efforts in Tanzania will need to account for these non-falciparum species., Competing Interests: Competing Interests: We declare no competing interests.
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- 2023
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46. Country wide surveillance reveals prevalent artemisinin partial resistance mutations with evidence for multiple origins and expansion of high level sulfadoxine-pyrimethamine resistance mutations in northwest Tanzania.
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Juliano JJ, Giesbrecht DJ, Simkin A, Fola AA, Lyimo BM, Pereus D, Bakari C, Madebe RA, Seth MD, Mandara CI, Popkin-Hall ZR, Moshi R, Mbwambo RB, Niaré K, MacInnis B, Francis F, Mbwambo D, Garimo I, Chacky F, Aaron S, Lusasi A, Molteni F, Njau RJA, Lazaro S, Mohamed A, Bailey JA, and Ishengoma DS
- Abstract
Background: Emergence of artemisinin partial resistance (ART-R) in Plasmodium falciparum is a growing threat to the efficacy of artemisinin combination therapies (ACT) and the efforts for malaria elimination. The emergence of Plasmodium falciparum Kelch13 (K13) R561H in Rwanda raised concern about the impact in neighboring Tanzania. In addition, regional concern over resistance affecting sulfadoxine-pyrimethamine (SP), which is used for chemoprevention strategies, is high., Methods: To enhance longitudinal monitoring, the Molecular Surveillance of Malaria in Tanzania (MSMT) project was launched in 2020 with the goal of assessing and mapping antimalarial resistance. Community and clinic samples were assessed for resistance polymorphisms using a molecular inversion probe platform., Findings: Genotyping of 6,278 samples collected countrywide in 2021 revealed a focus of K13 561H mutants in northwestern Tanzania (Kagera) with prevalence of 7.7% (50/649). A small number of 561H mutants (about 1%) were found as far as 800 km away in Tabora, Manyara, and Njombe. Genomic analysis suggests some of these parasites are highly related to isolates collected in Rwanda in 2015, supporting regional spread of 561H. However, a novel haplotype was also observed, likely indicating a second origin in the region. Other validated resistance polymorphisms (622I and 675V) were also identified. A focus of high sulfadoxine-pyrimethamine drug resistance was also identified in Kagera with a prevalence of dihydrofolate reductase 164L of 15% (80/526)., Interpretation: These findings demonstrate the K13 561H mutation is entrenched in the region and that multiple origins of ART-R, similar as to what was seen in Southeast Asia, have occurred. Mutations associated with high levels of SP resistance are increasing. These results raise concerns about the long-term efficacy of artemisinin and chemoprevention antimalarials in the region., Funding: This study was funded by the Bill and Melinda Gates Foundation and the National Institutes of Health.
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- 2023
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47. Malaria species positivity rates among symptomatic individuals across regions of differing transmission intensities in Mainland Tanzania.
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Popkin Hall ZR, Seth MD, Madebe RA, Budodo R, Bakari C, Francis F, Pereus D, Giesbrecht DJ, Mandara CI, Mbwambo D, Aaron S, Lazaro S, Bailey JA, Juliano JJ, and Ishengoma DS
- Abstract
Recent data indicate that non- Plasmodium falciparum species may be more prevalent than previously realized in sub-Saharan Africa, the region where 95% of the world's malaria cases occur. Although Plasmodium malariae, Plasmodium ovale spp., and Plasmodium vivax are generally less severe than P. falciparum , treatment and control are more challenging, and their geographic distributions are not well characterized. In order to characterize the distribution of malaria species in Mainland Tanzania (which has a high burden and geographically heterogeneous transmission levels), we randomly selected 3,284 samples from 12,845 samples to determine presence and parasitemia of different malaria species. The samples were collected from cross-sectional surveys in 100 health facilities across ten regions and analyzed via quantitative real-time PCR to characterize regional positivity rates for each species. P. falciparum was most prevalent, but P. malariae and P. ovale were found in all regions except Dar es Salaam, with high levels (>5%) of P. ovale in seven regions (70%). The highest positivity rate of P. malariae was 4.5% in Mara region and eight regions (80%) had positivity rates ≥1%. We also detected three P. vivax infections in the very low-transmission Kilimanjaro region. While most samples that tested positive for non-falciparum malaria were co-infected with P. falciparum , 23.6% (n = 13/55) of P. malariae and 14.7% (n = 24/163) of P. ovale spp. samples were mono-infections. P. falciparum remains by far the largest threat, but our data indicate that malaria elimination efforts in Tanzania will require increased surveillance and improved understanding of the biology of non-falciparum species.
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- 2023
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