96 results on '"Prakoso D"'
Search Results
2. Assessing low-cost sensor for characterizing temporal variation of PM2.5 in Bandung, Indonesia
- Author
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Kurniawati, Syukria, Santoso, Muhayatun, Nurhaini, Feni Fernita, Atmodjo, Djoko Prakoso D., Lestiani, Diah Dwiana, Ramadhani, Moch Faizal, Kusmartini, Indah, Syahfitri, Woro Yatu N., Damastuti, Endah, and Tursinah, Rasito
- Published
- 2025
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- View/download PDF
3. Preliminary Assessment of Morphology and Elemental Composition of Fine Particulates in Selected Urban Areas of Java Islan.
- Author
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Nurhaini, Feni Fernita, Ramadhan, Pascale, Santoso, Muhayatun, Kurniadi, Rizal, Dimyati, Arbi, Kusmartini, Indah, Lestiani, Diah Dwiana, Kurniawati, Syukria, Damastuti, Endah, Atmodjo, Djoko Prakoso D., Ramadhani, Moch Faizal, Syahfitri, Woro Yatu N., and Purnama, Dikdik Sidik
- Subjects
METROPOLIS ,X-ray fluorescence ,PARTICULATE matter ,CITIES & towns ,TRACE elements - Abstract
Rapid urbanization and high population density in three major cities in Indonesia, Bandung, Jakarta, and Tangerang have led to significant air quality issues. Fine inhalable particles (PM
2.5 ) with distinct morphologies and elemental compositions pose considerable health risks. This study evaluates the morphology and chemical composition of PM2.5 in these urban areas on Java Island. PM2.5 samples were collected for 24-hour periods using a Teflon filter with the Super Speciation-Air Sampling System (SuperSASS) following the EPA sampling schedule, from May to September 2022. The Teflon sample with the highest PM2.5 concentration, representative of both weekdays and weekends, was selected for morphological analysis using Scanning Electron Microscopy-Energy Dispersive X-ray (SEM-EDX) and elemental characterization using Energy-Dispersive X-ray Fluorescence (ED-XRF) Epsilon. SEM images revealed distinct morphological characteristics at each site. In Bandung, particles were irregularly shaped, agglomerated, and flaky, with sizes ranging from 1.1-1.6 µm on weekdays and 0.9-1.3 µm on weekends. Jakarta has particles with semi-crystalline, tabular, elongated, and puff-like morphology, with sizes predominantly from 0.5-0.8 µm on weekdays and 0.9-1.3 µm weekends. In Tangerang, particles were irregularly faceted and agglomerated, with sizes between 0.5-1.3 µm on weekdays and 0.9-1.4 µm on weekends. Teflon-derived minerals (C,F) were present across all sites. EDX spectra revealed Ca-rich particles in Bandung, while S-rich particles were observed in Jakarta and Tangerang. XRF analysis further proved the major and minor elements, reflecting local pollution sources. The combined use of SEMEDX and XRF offers a comprehensive profile of PM2.5 , highlighting specific pollution sources in each city. [ABSTRACT FROM AUTHOR]- Published
- 2024
- Full Text
- View/download PDF
4. The dynamic of mangroves and ponds changes in East Kalimantan, Indonesia
- Author
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Prakoso, D A R, primary, Hakim, L, additional, Pratama, D R, additional, Prananda, A R A, additional, Bayyan, M M, additional, Hidayat, T, additional, and Fajariyanto, Y, additional
- Published
- 2023
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5. Cardiac-Selective Adiponectin Receptor Gene Therapy as a Therapeutic Target for Cardiomyopathy In A Mouse Model Of Type 2 Diabetes
- Author
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De Blasio, M., primary, Mah, M., additional, Prakoso, D., additional, Deo, M., additional, Li, M., additional, Nash, D., additional, Kiriazis, H., additional, Qian, H., additional, Davey, J., additional, Gregorevic, P., additional, and Ritchie, R., additional
- Published
- 2023
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6. Diastolic dysfunction in a pre-clinical model of diabetes is associated with changes in the cardiac non-myocyte cellular composition
- Author
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Cohen, CD, De Blasio, MJ, Lee, MKS, Farrugia, GE, Prakoso, D, Krstevski, C, Deo, M, Donner, DG, Kiriazis, H, Flynn, MC, Gaynor, TL, Murphy, AJ, Drummond, GR, Pinto, AR, Ritchie, RH, Cohen, CD, De Blasio, MJ, Lee, MKS, Farrugia, GE, Prakoso, D, Krstevski, C, Deo, M, Donner, DG, Kiriazis, H, Flynn, MC, Gaynor, TL, Murphy, AJ, Drummond, GR, Pinto, AR, and Ritchie, RH
- Abstract
BACKGROUND: Diabetes is associated with a significantly elevated risk of cardiovascular disease and its specific pathophysiology remains unclear. Recent studies have changed our understanding of cardiac cellularity, with cellular changes accompanying diabetes yet to be examined in detail. This study aims to characterise the changes in the cardiac cellular landscape in murine diabetes to identify potential cellular protagonists in the diabetic heart. METHODS: Diabetes was induced in male FVB/N mice by low-dose streptozotocin and a high-fat diet for 26-weeks. Cardiac function was measured by echocardiography at endpoint. Flow cytometry was performed on cardiac ventricles as well as blood, spleen, and bone-marrow at endpoint from non-diabetic and diabetic mice. To validate flow cytometry results, immunofluorescence staining was conducted on left-ventricles of age-matched mice. RESULTS: Mice with diabetes exhibited hyperglycaemia and impaired glucose tolerance at endpoint. Echocardiography revealed reduced E:A and e':a' ratios in diabetic mice indicating diastolic dysfunction. Systolic function was not different between the experimental groups. Detailed examination of cardiac cellularity found resident mesenchymal cells (RMCs) were elevated as a result of diabetes, due to a marked increase in cardiac fibroblasts, while smooth muscle cells were reduced in proportion. Moreover, we found increased levels of Ly6Chi monocytes in both the heart and in the blood. Consistent with this, the proportion of bone-marrow haematopoietic stem cells were increased in diabetic mice. CONCLUSIONS: Murine diabetes results in distinct changes in cardiac cellularity. These changes-in particular increased levels of fibroblasts-offer a framework for understanding how cardiac cellularity changes in diabetes. The results also point to new cellular mechanisms in this context, which may further aid in development of pharmacotherapies to allay the progression of cardiomyopathy associated with diabet
- Published
- 2021
7. Bone Morphogenetic Protein 7 Gene Delivery Improves Cardiac Structure and Function in a Murine Model of Diabetic Cardiomyopathy
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Tate, M, Perera, N, Prakoso, D, Willis, AM, Deo, M, Oseghale, O, Qian, H, Donner, DG, Kiriazis, H, De Blasio, MJ, Gregorevic, P, Ritchie, RH, Tate, M, Perera, N, Prakoso, D, Willis, AM, Deo, M, Oseghale, O, Qian, H, Donner, DG, Kiriazis, H, De Blasio, MJ, Gregorevic, P, and Ritchie, RH
- Abstract
Diabetes is a major contributor to the increasing burden of heart failure prevalence globally, at least in part due to a disease process termed diabetic cardiomyopathy. Diabetic cardiomyopathy is characterised by cardiac structural changes that are caused by chronic exposure to the diabetic milieu. These structural changes are a major cause of left ventricular (LV) wall stiffness and the development of LV dysfunction. In the current study, we investigated the therapeutic potential of a cardiac-targeted bone morphogenetic protein 7 (BMP7) gene therapy, administered once diastolic dysfunction was present, mimicking the timeframe in which clinical management of the cardiomyopathy would likely be desired. Following 18 weeks of untreated diabetes, mice were administered with a single tail-vein injection of recombinant adeno-associated viral vector (AAV), containing the BMP7 gene, or null vector. Our data demonstrated, after 8 weeks of treatment, that rAAV6-BMP7 treatment exerted beneficial effects on LV functional and structural changes. Importantly, diabetes-induced LV dysfunction was significantly attenuated by a single administration of rAAV6-BMP7. This was associated with a reduction in cardiac fibrosis, cardiomyocyte hypertrophy and cardiomyocyte apoptosis. In conclusion, BMP7 gene therapy limited pathological remodelling in the diabetic heart, conferring an improvement in cardiac function. These findings provide insight for the potential development of treatment strategies urgently needed to delay or reverse LV pathological remodelling in the diabetic heart.
- Published
- 2021
8. Mapping the Cellular Landscape of the Diabetic Heart
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Cohen, C., primary, De Blasio, M., additional, Farrugia, G., additional, Dona, M., additional, Hsu, I., additional, Prakoso, D., additional, Krstevski, C., additional, Nash, D., additional, Li, M., additional, Drummond, G., additional, Ritchie, R., additional, and Pinto, A., additional
- Published
- 2021
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9. Characterising the Myocardial Mitochondria Phenotype in a Murine Model of Diabetic Cardiomyopathy
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Parker, A., primary, Tate, M., additional, Prakoso, D., additional, Deo, M., additional, Willis, A., additional, Nash, D., additional, Donner, D., additional, Crawford, S., additional, Kiriazis, H., additional, Granata, C., additional, Coughlan, M., additional, De Blasio, M., additional, and Ritchie, R., additional
- Published
- 2021
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10. Is dengue the only arbovirus circulating in Pakistan? Report from southern region of the country
- Author
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Imtiaz, K., primary, Azizullah, Z., additional, Farooqi, J., additional, Prakoso, D., additional, Mehmood, F., additional, Jamil, B., additional, Barr, K., additional, Long, M., additional, and Khan, E., additional
- Published
- 2020
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11. 040 Investigating the Role of Mitochondria-Targeted Antioxidant, MitoQ, in Cardiomyocytes Exposed to High Glucose
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Parker, A., primary, Tate, M., additional, De Blasio, M., additional, Prakoso, D., additional, Velagic, A., additional, Deo, M., additional, Krieg, T., additional, Murphy, M., additional, and Ritchie, R., additional
- Published
- 2020
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12. The Relative Contribution of High Fat Diet and Hyperglycaemia and Their Combination to the Structural Phenotype of the Diabetic Heart
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De Blasio, M., Alexander, N., Wong, C., Wanrooy, B., Deo, M., Qin, C., Tare, M., Prakoso, D., and Ritchie, R.
- Published
- 2022
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13. Defining the Characteristics of a More Clinically Relevant Mouse Model of Type-2 Diabetes (T2D)-Induced Cardiomyopathy
- Author
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De Blasio, M., primary, Tate, M., additional, Prakoso, D., additional, Willis, A., additional, Deo, M., additional, Walsh, J., additional, Cohen, C., additional, Rofe, A., additional, Peng, S., additional, Qin, C., additional, Kiriazis, H., additional, Donner, D., additional, Watson, A., additional, and Ritchie, R., additional
- Published
- 2019
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14. P2841Cardiac-selective targeting of histone deacetylase 4 to limit experimental diabetic cardiomyopathy
- Author
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Tate, M, primary, Willis, A M, additional, Deo, M, additional, De Blasio, M J, additional, Prakoso, D, additional, Kiriazis, H, additional, Du, X.-J, additional, Qian, H.-W, additional, McGee, S, additional, Gregorevic, P, additional, and Ritchie, R H, additional
- Published
- 2018
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15. 5213Manipulation of cardiac O-GlcNAc modification alters cardiac function and remodelling in the setting of diabetic cardiomyopathy
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Prakoso, D, primary, Kiriazis, H, additional, Tate, M, additional, Qian, H, additional, Deo, M, additional, Parry, L, additional, Gregorevic, P, additional, Du, X, additional, Chatham, J, additional, De Blasio, M, additional, and Ritchie, R, additional
- Published
- 2018
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16. The Role of Sustained Glucose-Driven Post–Translational Protein Modification on the Myocardium: Implications for Diabetes Induced-Heart Failure
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Prakoso, D., primary, Deo, M., additional, Kiriazis, H., additional, Tate, M., additional, Qian, H., additional, Parry, L., additional, Gregorevic, P., additional, Du, X., additional, Chatham, J., additional, De Blasio, M., additional, and Ritchie, R., additional
- Published
- 2018
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17. Progression of Markers Contributing to Cardiomyopathy in a Mouse Model of Type 1 Diabetes
- Author
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De Blasio, M., primary, Huynh, N., additional, Dubrana, L., additional, Prakoso, D., additional, Qin, C., additional, Tate, M., additional, Deo, M., additional, Oseghale, O., additional, Kiriazis, H., additional, Du, X., additional, and Ritchie, R., additional
- Published
- 2018
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18. P4461Cardiac-selective bone morphogenetic protein 7 (BMP7) gene therapy to target cardiac fibrosis in a mouse model of diabetic cardiomyopathy
- Author
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Tate, M., primary, Oseghale, O., additional, De Blasio, M.J., additional, Prakoso, D., additional, Qian, H., additional, Kiriazis, H., additional, Du, X.J., additional, Gregorevic, P., additional, and Ritchie, R.H., additional
- Published
- 2017
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19. Serelaxin treatment reverses vascular dysfunction and left ventricular hypertrophy in a mouse model of Type 1 diabetes
- Author
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Ng, HH, Leo, CH, Prakoso, D, Qin, C, Ritchie, RH, Parry, LJ, Ng, HH, Leo, CH, Prakoso, D, Qin, C, Ritchie, RH, and Parry, LJ
- Abstract
Serelaxin prevents endothelial dysfunction in the mouse aorta ex vivo and inhibits apoptosis in cardiomyocytes under acute hyperglycaemia. Less is known about the effects of serelaxin in an in vivo mouse model of diabetes. Therefore, we tested the hypothesis in streptozotocin (STZ)-treated mice that serelaxin is able to reverse diabetes-induced vascular dysfunction and cardiac remodelling. Mice were divided into citrate buffer + placebo, STZ + placebo and STZ + serelaxin (0.5 mg/kg/d, 2 weeks) groups. After 12 weeks of diabetes, sensitivity to the endothelium-dependent agonist acetylcholine (ACh) was reduced in the mesenteric artery. This was accompanied by an enhanced vasoconstrictor prostanoid contribution and a decrease in endothelium-derived hyperpolarisation (EDH)-mediated relaxation. Serelaxin restored endothelial function by increasing nitric oxide (NO)-mediated relaxation but not EDH. It also normalised the contribution of vasoconstrictor prostanoids to endothelial dysfunction and suppressed diabetes-induced hyper-responsiveness of the mesenteric artery to angiotensin II. Similarly, diabetes reduced ACh-evoked NO-mediated relaxation in the aorta which was reversed by serelaxin. In the left ventricle, diabetes promoted apoptosis, hypertrophy and fibrosis; serelaxin treatment reversed this ventricular apoptosis and hypertrophy, but had no effect on fibrosis. In summary, serelaxin reversed diabetes-induced endothelial dysfunction by enhancing NO-mediated relaxation in the mouse vasculature and attenuating left ventricular hypertrophy and apoptosis.
- Published
- 2017
20. Endogenous Annexin-A1 Regulates Haematopoietic Stem Cell Mobilisation and Inflammatory Response Post Myocardial Infarction in Mice In Vivo
- Author
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Qin, CX, Finlayson, SB, Al-Sharea, A, Tate, M, De Blasio, MJ, Deo, M, Rosli, S, Prakoso, D, Thomas, CJ, Kiriazis, H, Gould, E, Yang, YH, Morand, EF, Perretti, M, Murphy, AJ, Du, X-J, Gao, X-M, Ritchie, RH, Qin, CX, Finlayson, SB, Al-Sharea, A, Tate, M, De Blasio, MJ, Deo, M, Rosli, S, Prakoso, D, Thomas, CJ, Kiriazis, H, Gould, E, Yang, YH, Morand, EF, Perretti, M, Murphy, AJ, Du, X-J, Gao, X-M, and Ritchie, RH
- Abstract
Endogenous anti-inflammatory annexin-A1 (ANX-A1) plays an important role in preserving left ventricular (LV) viability and function after ischaemic insults in vitro, but its long-term cardioprotective actions in vivo are largely unknown. We tested the hypothesis that ANX-A1-deficiency exaggerates inflammation, haematopoietic stem progenitor cell (HSPC) activity and LV remodelling in response to myocardial ischaemia in vivo. Adult ANX - A1 -/- mice subjected to coronary artery occlusion exhibited increased infarct size and LV macrophage content after 24-48 h reperfusion compared with wildtype (WT) counterparts. In addition, ANX - A1 -/- mice exhibited greater expansion of HSPCs and altered pattern of HSPC mobilisation 8 days post-myocardial infarction, with increased circulating neutrophils and platelets, consistent with increased cardiac inflammation as a result of increased myeloid invading injured myocardium in response to MI. Furthermore, ANX - A1 -/- mice exhibited significantly increased expression of LV pro-inflammatory and pro-fibrotic genes and collagen deposition after MI compared to WT counterparts. ANX-A1-deficiency increased cardiac necrosis, inflammation, hypertrophy and fibrosis following MI, accompanied by exaggerated HSPC activity and impaired macrophage phenotype. These findings suggest that endogenous ANX-A1 regulates mobilisation and differentiation of HSPCs. Limiting excessive monocyte/neutrophil production may limit LV damage in vivo. Our findings support further development of novel ANX-A1-based therapies to improve cardiac outcomes after MI.
- Published
- 2017
21. Using Gene Delivery to Target Cardiac O-GlcNAc Protein Modifications in the Diabetic Heart: Impact on Left Ventricular (LV) Function
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Prakoso, D., primary, Kiriazis, H., additional, Tate, M., additional, Qian, H., additional, Deo, M., additional, Parry, L., additional, Gregorevic, P., additional, Du, X., additional, Chatham, J., additional, De Blasio, M., additional, and Ritchie, R., additional
- Published
- 2017
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22. Cardiac Remodelling and Inflammation Associated with Diabetic Cardiomyopathy is Mitigated by Phosphoinositide 3-Kinase P110α Gene Delivery
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Prakoso, D., primary, De Blasio, M., additional, Kiriazis, H., additional, Qian, H., additional, Deo, M., additional, Jap, E., additional, Weeks, K., additional, Parry, L., additional, Du, X., additional, Gregorevic, P., additional, McMullen, J., additional, and Ritchie, R., additional
- Published
- 2017
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23. Phosphoinositide 3-Kinase p110alpha Gene Therapy Rescues Diabetic Cardiomyopathy in a Type 2 Diabetic Model
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Prakoso, D., primary, De Blasio, M., additional, Kiriazis, H., additional, Qian, H., additional, Deo, M., additional, Jap, E., additional, Weeks, K., additional, Parry, L., additional, Du, X., additional, Gregorevic, P., additional, McMullen, J., additional, and Ritchie, R., additional
- Published
- 2016
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24. Cardiac-Specific Insulin-like Growth Factor-1 Receptor (IGF-1R) Expression Attenuates Upregulation of Left Ventricular Hexosamine Biosynthesis (HBP) Flux and Oxidative Stress in Diabetic Mouse Myocardium
- Author
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De Blasio, M., primary, Prakoso, D., additional, Qin, C., additional, Rosli, S., additional, Kiriazis, H., additional, Du, X., additional, Chatham, J., additional, McMullen, J., additional, and Ritchie, R., additional
- Published
- 2016
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25. Phosphoinositide 3 kinase p110a (rAAV6-caPI3K) gene therapy attenuates diabetic cardiomyopathy in mice
- Author
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Prakoso, D., primary, DeBlasio, M., additional, Kiriazis, H., additional, Rosli, S., additional, Qin, C., additional, Jun Du, X., additional, McMullen, J., additional, and Richie, R., additional
- Published
- 2015
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26. Preliminary Assessment of Morphology and Elemental Composition of Fine Particulates in Selected Urban Areas of Java Island
- Author
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Feni Fernita Nurhaini, Pascale Ramadhan, Muhayatun Santoso, Rizal Kurniadi, Arbi Dimyati, Indah Kusmartini, Diah Dwiana Lestiani, Syukria Kurniawati, Endah Damastuti, Djoko Prakoso D. Atmodjo, Moch Faizal Ramadhani, Woro Yatu N. Syahfitri, and Dikdik Sidik Purnama
- Subjects
pm2.5 ,teflon ,supersass ,morphology ,elemental ,Environmental technology. Sanitary engineering ,TD1-1066 ,Environmental sciences ,GE1-350 - Abstract
Rapid urbanization and high population density in three major cities in Indonesia, Bandung, Jakarta, and Tangerang have led to significant air quality issues. Fine inhalable particles (PM2.5) with distinct morphologies and elemental compositions pose considerable health risks. This study evaluates the morphology and chemical composition of PM2.5 in these urban areas on Java Island. PM2.5 samples were collected for 24-hour periods using a Teflon filter with the Super Speciation-Air Sampling System (SuperSASS) following the EPA sampling schedule, from May to September 2022. The Teflon sample with the highest PM2.5 concentration, representative of both weekdays and weekends, was selected for morphological analysis using Scanning Electron Microscopy-Energy Dispersive X-ray (SEM-EDX) and elemental characterization using Energy-Dispersive X-ray Fluorescence (ED-XRF) Epsilon. SEM images revealed distinct morphological characteristics at each site. In Bandung, particles were irregularly shaped, agglomerated, and flaky, with sizes ranging from 1.1-1.6 µm on weekdays and 0.9-1.3 µm on weekends. Jakarta has particles with semi-crystalline, tabular, elongated, and puff-like morphology, with sizes predominantly from 0.5-0.8 µm on weekdays and 0.9-1.3 µm weekends. In Tangerang, particles were irregularly faceted and agglomerated, with sizes between 0.5-1.3 µm on weekdays and 0.9-1.4 µm on weekends. Teflon-derived minerals (C,F) were present across all sites. EDX spectra revealed Ca-rich particles in Bandung, while S-rich particles were observed in Jakarta and Tangerang. XRF analysis further proved the major and minor elements, reflecting local pollution sources. The combined use of SEM-EDX and XRF offers a comprehensive profile of PM2.5, highlighting specific pollution sources in each city.
- Published
- 2024
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27. Negevirus Piura Suppresses Zika Virus Replication in Mosquito Cells.
- Author
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Carvalho VL, Prakoso D, Schwarz ER, Logan TD, Nunes BTD, Beachboard SE, and Long MT
- Subjects
- Animals, Virus Replication, Zika Virus, Zika Virus Infection, Coinfection, Aedes, Insect Viruses
- Abstract
We investigated the interaction between the insect-specific virus, Piura virus (PIUV), and the arbovirus Zika virus (ZIKV) in Aedes albopictus cells. We performed coinfection experiments in C6/36 cells. Piura virus (Cor 33 strain, Colombia) and ZIKV (PRVABC58 strain, Puerto Rico) were co-inoculated into C6/36 cells using two multiplicity of infection (MOI) combinations: 0.1 for both viruses and 1.0 for ZIKV, 0.1 for PIUV. Wells were infected in triplicate with either PIUV and ZIKV coinfection, ZIKV-only, or PIUV-only. Mock infected cells served as control wells. The cell suspension was collected daily 7 days post-infection. Zika virus load was titrated by TCID
50 on Vero 76 cells. The ZIKV-only infection and PIUV and ZIKV coinfection experiments were also quantified by RT-qPCR. We also investigated whether ZIKV interfered in the PIUV replication. PIUV suppressed the replication of ZIKV, resulting in a 10,000-fold reduction in ZIKV titers within 3 days post-infection. PIUV viral loads were not reduced in the presence of ZIKV. We conclude that, when concurrently infected, PIUV suppresses ZIKV in C6/36 cells while ZIKV does not interfere in PIUV replication.- Published
- 2024
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28. Leptospira transcriptome sequencing using long-read technology reveals unannotated transcripts and potential polyadenylation of RNA molecules.
- Author
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Xu R, Prakoso D, Salvador LCM, and Rajeev S
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- Animals, Humans, Transcriptome, Polyadenylation, RNA, Leptospira genetics, Leptospirosis genetics
- Abstract
Importance: Leptospirosis, caused by the spirochete bacteria Leptospira , is a zoonotic disease of humans and animals, accounting for over 1 million annual human cases and over 60,000 deaths. We have characterized operon transcriptional units, identified novel RNA coding regions, and reported evidence of potential posttranscriptional polyadenylation in the Leptospira transcriptomes for the first time using Oxford Nanopore Technology RNA sequencing protocols. The newly identified RNA coding regions and operon transcriptional units were detected only in the pathogenic Leptospira transcriptomes, suggesting their significance in virulence-related functions. This article integrates bioinformatics, infectious diseases, microbiology, molecular biology, veterinary sciences, and public health. Given the current knowledge gap in the regulation of leptospiral pathogenicity, our findings offer valuable insights to researchers studying leptospiral pathogenicity and provide both a basis and a tool for researchers focusing on prokaryotic molecular studies for the understanding of RNA compositions and prokaryotic polyadenylation for their organisms of interest., Competing Interests: The authors declare no conflict of interest.
- Published
- 2023
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29. Mapping the cellular and molecular landscape of cardiac non-myocytes in murine diabetic cardiomyopathy.
- Author
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Cohen CD, De Blasio MJ, Farrugia GE, Dona MSI, Hsu I, Prakoso D, Kiriazis H, Krstevski C, Nash DM, Li M, Gaynor TL, Deo M, Drummond GR, Ritchie RH, and Pinto AR
- Abstract
Diabetes is associated with a significantly elevated risk of heart failure. However, despite extensive efforts to characterize the phenotype of the diabetic heart, the molecular and cellular protagonists that underpin cardiac pathological remodeling in diabetes remain unclear, with a notable paucity of data regarding the impact of diabetes on non-myocytes within the heart. Here we aimed to define key differences in cardiac non-myocytes between spontaneously type-2 diabetic ( db/db ) and healthy control (db/h) mouse hearts. Single-cell transcriptomic analysis revealed a concerted diabetes-induced cellular response contributing to cardiac remodeling. These included cell-specific activation of gene programs relating to fibroblast hyperplasia and cell migration, and dysregulation of pathways involving vascular homeostasis and protein folding. This work offers a new perspective for understanding the cellular mediators of diabetes-induced cardiac pathology, and pathways that may be targeted to address the cardiac complications associated with diabetes., Competing Interests: The authors declare no competing interests., (© 2023 The Authors.)
- Published
- 2023
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30. Everglades virus evolution: Genome sequence analysis of the envelope 1 protein reveals recent mutation and divergence in South Florida wetlands.
- Author
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Valente MC, Prakoso D, Vittor AY, Blosser EM, Abid N, Pu R, Beachboard SE, Long MT, Burkett-Cadena ND, and Mavian CN
- Abstract
Everglades virus (EVEV) is a subtype (II) of Venezuelan equine encephalitis virus (VEEV), endemic in southern Florida, USA. EVEV has caused clinical encephalitis in humans, and antibodies have been found in a variety of wild and domesticated mammals. Over 29,000 Culex cedecei females, the main vector of EVEV, were collected in 2017 from Big Cypress and Fakahatchee Strand Preserves in Florida and pool-screened for the presence of EVEV using reverse transcription real-time polymerase chain reaction. The entire 1 E1 protein gene was successfully sequenced from fifteen positive pools. Phylogenetic analysis showed that isolates clustered, based on the location of sampling, into two monophyletic clades that diverged in 2009. Structural analyses revealed two mutations of interest, A116V and H441R, which were shared among all isolates obtained after its first isolation of EVEV in 1963, possibly reflecting adaptation to a new host. Alterations of the Everglades ecosystem may have contributed to the evolution of EVEV and its geographic compartmentalization. This is the first report that shows in detail the evolution of EVEV in South Florida. This zoonotic pathogen warrants inclusion into routine surveillance given the high natural infection rate in the vectors. Invasive species, increasing urbanization, the Everglades restoration, and modifications to the ecosystem due to climate change and habitat fragmentation in South Florida may increase rates of EVEV spillover to the human population., (© The Author(s) 2022. Published by Oxford University Press.)
- Published
- 2022
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31. Current landscape of preclinical models of diabetic cardiomyopathy.
- Author
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Prakoso D, De Blasio MJ, Tate M, and Ritchie RH
- Subjects
- Animals, Humans, Diabetes Mellitus, Diabetic Cardiomyopathies drug therapy, Heart Failure etiology
- Abstract
Patients with diabetes have an increased risk of developing heart failure, preceded by (often asymptomatic) cardiac abnormalities, collectively called diabetic cardiomyopathy (DC). Diabetic heart failure lacks effective treatment, remaining an urgent, unmet clinical need. Although structural and functional characteristics of the diabetic human heart are well defined, clinical studies lack the ability to pinpoint the specific mechanisms responsible for DC. Preclinical animal models represent a vital component for understanding disease aetiology, which is essential for the discovery of new targeted treatments for diabetes-induced heart failure. In this review, we describe the current landscape of preclinical DC models (genetic, pharmacologically induced, and diet-induced models), highlighting their strengths and weaknesses and alignment to features of the human disease. Finally, we provide tools, resources, and recommendations to assist future preclinical translation addressing this knowledge gap., Competing Interests: Declaration of interests The authors declare that there are no competing interests associated with the manuscript., (Copyright © 2022 Elsevier Ltd. All rights reserved.)
- Published
- 2022
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32. The air quality of Palangka Raya, Central Kalimantan, Indonesia: The impacts of forest fires on visibility.
- Author
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Santoso M, Hopke PK, Damastuti E, Lestiani DD, Kurniawati S, Kusmartini I, Prakoso D, Kumalasari D, and Riadi A
- Subjects
- Humans, Indonesia, Particulate Matter analysis, Air Pollution analysis, Wildfires, Fires, Air Pollutants analysis
- Abstract
Airborne particles in urban Palangka Raya, Kalimantan from Oct 2011 until Oct 2020 have been collected and analyzed for PM
2.5 , PM10 , and Black Carbon (BC) concentrations. Palangka Raya is a city that serves the capital of the Central Kalimantan province on the island of Borneo. Kalimantan is affected by peat fires that occur periodically. There were identified increases in PM2.5 and PM10 concentrations during El Niño periods. During the forest fire episode in September - October 2015, PM2.5 and PM10 concentrations increased significantly, to nearly 400 µg/m3 and 800 µg/m3 , respectively, and visibility in the city was reduced to < 0.2 miles. The highest BC concentrations were observed during this massive forest fires episode. The regression analyses for PM2.5 , PM10 and visibility in Palangka Raya during the period of 2011-2020, showed a non-linear correlation with reduction in visibility due to increased PM2.5 and PM10 . There was no correlation for BC with visibility. Air quality in Palangka Raya was at a relatively good level with concentrations below the national ambient air quality standard when there were no forest fires event. Emissions from forest fires caused a substantial reduction in air quality reaching concentrations well above ambient air quality standards and are likely to have caused adverse health effects on the people living in the area. Implications : Indonesia has repeatedly experienced forest fires, especially on Kalimantan and Sumatera Islands, which burned large areas of peatland. The forest fires leading to increasing PM concentrations especially in the PM2.5 size range which influence visibility. The seasonal variations of BC in Palangka Raya and the relationships of fine particulates with visibility were assessed. The results of regression analyses for PM2.5 and PM10 to visibility during the period of 2011-2020 showed non-linear relationships. An increasing of PM2.5 and PM10 concentrations during El Nino periods were detected well above the ambient air quality standard. To ensure effective and continued handling and prevention of forest and peatland fires, the government set up a special task force and review on several rules, including laws and government regulations as well as governor regulations that permit the burning of forest and peatland areas. These results are expected to be used to formulate more effective mitigations in reducing forest fires events in Indonesia.- Published
- 2022
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33. Leptospira enrichment culture followed by ONT metagenomic sequencing allows better detection of Leptospira presence and diversity in water and soil samples.
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Gorman M, Xu R, Prakoso D, Salvador LCM, and Rajeev S
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- Animals, Humans, Water, Zoonoses, Soil, Leptospira genetics, Leptospirosis diagnosis, Leptospirosis epidemiology
- Abstract
Background: Leptospirosis, a life-threatening disease in humans and animals, is one of the most widespread global zoonosis. Contaminated soil and water are the major transmission sources in humans and animals. Clusters of disease outbreaks are common during rainy seasons., Methodology/principal Findings: In this study, to detect the presence of Leptospira, we applied PCR, direct metagenomic sequencing, and enrichment culture followed by PCR and metagenomic sequencing on water and soil samples. Direct sequencing and enrichment cultures followed by PCR or sequencing effectively detected pathogenic and nonpathogenic Leptospira compared to direct PCR and 16S amplification-based metagenomic sequencing in soil or water samples. Among multiple culture media evaluated, Ellinghausen-McCullough-Johnson-Harris (EMJH) media containing antimicrobial agents was superior in recovering and detecting Leptospira from the environmental samples. Our results show that enrichment culture followed by PCR can be used to confirm the presence of pathogenic Leptospira in environmental samples. Additionally, metagenomic sequencing on enrichment cultures effectively detects the abundance and diversity of Leptospira spp. from environmental samples., Conclusions/significance: The selection of methodology is critical when testing environmental samples for the presence of Leptospira. Selective enrichment culture improves Leptospira detection efficacy by PCR or metagenomic sequencing and can be used successfully to understand the presence and diversity of pathogenic Leptospira during environmental surveillance., Competing Interests: The authors have declared that no competing interests exist., (Copyright: © 2022 Gorman et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.)
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- 2022
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34. Fine-tuning the cardiac O-GlcNAcylation regulatory enzymes governs the functional and structural phenotype of the diabetic heart.
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Prakoso D, Lim SY, Erickson JR, Wallace RS, Lees JG, Tate M, Kiriazis H, Donner DG, Henstridge DC, Davey JR, Qian H, Deo M, Parry LJ, Davidoff AJ, Gregorevic P, Chatham JC, De Blasio MJ, and Ritchie RH
- Subjects
- Aged, Animals, Antigens, Neoplasm genetics, Cell Line, Class I Phosphatidylinositol 3-Kinases metabolism, Diabetic Cardiomyopathies genetics, Diabetic Cardiomyopathies pathology, Diabetic Cardiomyopathies physiopathology, Disease Models, Animal, Female, Fibrosis, Gene Expression Regulation, Glycosylation, Histone Acetyltransferases genetics, Humans, Hyaluronoglucosaminidase genetics, Male, Mice, Middle Aged, Myocytes, Cardiac pathology, N-Acetylglucosaminyltransferases genetics, Phenotype, Proto-Oncogene Proteins c-akt metabolism, Reactive Oxygen Species metabolism, Signal Transduction, Ventricular Dysfunction, Left genetics, Ventricular Dysfunction, Left pathology, Ventricular Dysfunction, Left physiopathology, Antigens, Neoplasm metabolism, Diabetic Cardiomyopathies enzymology, Histone Acetyltransferases metabolism, Hyaluronoglucosaminidase metabolism, Myocytes, Cardiac enzymology, N-Acetylglucosaminyltransferases metabolism, Protein Processing, Post-Translational, Ventricular Dysfunction, Left enzymology, Ventricular Function, Left, Ventricular Remodeling
- Abstract
Aims: The glucose-driven enzymatic modification of myocardial proteins by the sugar moiety, β-N-acetylglucosamine (O-GlcNAc), is increased in pre-clinical models of diabetes, implicating protein O-GlcNAc modification in diabetes-induced heart failure. Our aim was to specifically examine cardiac manipulation of the two regulatory enzymes of this process on the cardiac phenotype, in the presence and absence of diabetes, utilising cardiac-targeted recombinant-adeno-associated viral-vector-6 (rAAV6)-mediated gene delivery., Methods and Results: In human myocardium, total protein O-GlcNAc modification was elevated in diabetic relative to non-diabetic patients, and correlated with left ventricular (LV) dysfunction. The impact of rAAV6-delivered O-GlcNAc transferase (rAAV6-OGT, facilitating protein O-GlcNAcylation), O-GlcNAcase (rAAV6-OGA, facilitating de-O-GlcNAcylation), and empty vector (null) were determined in non-diabetic and diabetic mice. In non-diabetic mice, rAAV6-OGT was sufficient to impair LV diastolic function and induce maladaptive cardiac remodelling, including cardiac fibrosis and increased Myh-7 and Nppa pro-hypertrophic gene expression, recapitulating characteristics of diabetic cardiomyopathy. In contrast, rAAV6-OGA (but not rAAV6-OGT) rescued LV diastolic function and adverse cardiac remodelling in diabetic mice. Molecular insights implicated impaired cardiac PI3K(p110α)-Akt signalling as a potential contributing mechanism to the detrimental consequences of rAAV6-OGT in vivo. In contrast, rAAV6-OGA preserved PI3K(p110α)-Akt signalling in diabetic mouse myocardium in vivo and prevented high glucose-induced impairments in mitochondrial respiration in human cardiomyocytes in vitro., Conclusion: Maladaptive protein O-GlcNAc modification is evident in human diabetic myocardium, and is a critical regulator of the diabetic heart phenotype. Selective targeting of cardiac protein O-GlcNAcylation to restore physiological O-GlcNAc balance may represent a novel therapeutic approach for diabetes-induced heart failure., (Published on behalf of the European Society of Cardiology. All rights reserved. © The Author(s) 2021. For permissions, please email: journals.permissions@oup.com.)
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- 2022
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35. Galleria mellonella infection model to evaluate pathogenic and nonpathogenic Leptospira strains.
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Prakoso D, Zhu X, and Rajeev S
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- Animals, Cricetinae, Disease Models, Animal, Larva microbiology, Virulence, Leptospira pathogenicity, Leptospirosis microbiology, Moths microbiology
- Abstract
The Galleria mellonella larvae infection model is emerging as a valuable tool for studying various characteristics of infectious agents and host-pathogen interaction. This system has been widely recognized as a high throughput, ethical, and cost-effective invertebrate infection model to study the virulence and pathogenesis of various bacterial pathogens. In this study, we compared the effect of Leptospira infection in G. mellonella larvae infected with Leptospira interrogans serovar Copenhageni (pathogenic) or Leptospira biflexa serovar Patoc (saprophytic) strains. We observed significant pathologic changes such as decreased activity, complete melanization, and lower survival rate in the G. mellonella larvae infected with a pathogenic strain L. interrogans serovar Copenhageni compared to those infected with a nonpathogenic strain L. biflexa serovar Patoc. Our study demonstrates the feasibility and the potential of using G. mellonella larvae as an alternative model to study virulence mechanisms and pathogenesis of Leptospira strains. Once optimized, the G. mellonella infection model can be a potential substitute for hamsters to explore various host and pathogen-related mechanistic events in Leptospira infection., (Copyright © 2021 Elsevier B.V. All rights reserved.)
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- 2022
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36. Bone Morphogenetic Protein 7 Gene Delivery Improves Cardiac Structure and Function in a Murine Model of Diabetic Cardiomyopathy.
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Tate M, Perera N, Prakoso D, Willis AM, Deo M, Oseghale O, Qian H, Donner DG, Kiriazis H, De Blasio MJ, Gregorevic P, and Ritchie RH
- Abstract
Diabetes is a major contributor to the increasing burden of heart failure prevalence globally, at least in part due to a disease process termed diabetic cardiomyopathy. Diabetic cardiomyopathy is characterised by cardiac structural changes that are caused by chronic exposure to the diabetic milieu. These structural changes are a major cause of left ventricular (LV) wall stiffness and the development of LV dysfunction. In the current study, we investigated the therapeutic potential of a cardiac-targeted bone morphogenetic protein 7 (BMP7) gene therapy, administered once diastolic dysfunction was present, mimicking the timeframe in which clinical management of the cardiomyopathy would likely be desired. Following 18 weeks of untreated diabetes, mice were administered with a single tail-vein injection of recombinant adeno-associated viral vector (AAV), containing the BMP7 gene, or null vector. Our data demonstrated, after 8 weeks of treatment, that rAAV6-BMP7 treatment exerted beneficial effects on LV functional and structural changes. Importantly, diabetes-induced LV dysfunction was significantly attenuated by a single administration of rAAV6-BMP7. This was associated with a reduction in cardiac fibrosis, cardiomyocyte hypertrophy and cardiomyocyte apoptosis. In conclusion, BMP7 gene therapy limited pathological remodelling in the diabetic heart, conferring an improvement in cardiac function. These findings provide insight for the potential development of treatment strategies urgently needed to delay or reverse LV pathological remodelling in the diabetic heart., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest. The handling editor declared a past co‐authorship with one of the authors RHR., (Copyright © 2021 Tate, Perera, Prakoso, Willis, Deo, Oseghale, Qian, Donner, Kiriazis, De Blasio, Gregorevic and Ritchie.)
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- 2021
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37. Feasibility of using tissue autolysis to estimate the postmortem interval in horses.
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Wenzlow N, Neal D, Stern AW, Prakoso D, Liu JJ, Delcambre GH, Beachboard S, and Long MT
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- Animals, Autopsy veterinary, Feasibility Studies, Forensic Pathology, Horses, Muscle, Skeletal, Horse Diseases, Postmortem Changes
- Abstract
Estimation of the postmortem interval (PMI) is a poorly studied field in veterinary pathology. The development of field-applicable methods is needed given that animal cruelty investigations are increasing continually. We evaluated various histologic criteria in equine brain, liver, and muscle tissue to aid the estimation of PMI in horses, which is central to forensic investigations of suspicious death. After death, autolysis proceeds predictably, depending on environmental conditions. Currently, no field-applied methods exist that accurately estimate the PMI using histology in animals or humans through quantification of autolysis. Brain, liver, and skeletal muscle from 12 freshly euthanized horses were held at 22°C and 8°C for 72 h. Tissues were sampled at T0h, T1h, T2h, T4h, T6h, T12h, T24h, T36h, T48h, T60h, and T72h. For each tissue, we quantified 5 to 7 criteria associated with autolysis, based on the percentage of microscopic field involved. Each criterion was modeled, with temperature and time as independent variables. Changes were most predictable in liver and muscle over the first 72 h postmortem. The criteria for autolysis that were present most extensively at both temperatures were hepatocyte individualization and the separation of bile duct epithelium from the basement membrane. The changes that were present next most extensively were disruption of myofiber continuity, hypereosinophilia, and loss of striation. Brain changes were highly variable. The high statistical correlation between the parameter "autolysis" and the variables "time/temperature", indicates that autolysis is progressive and predictable. Further investigation of these criteria is needed to establish histologic algorithms for PMI.
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- 2021
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38. Characterisation of the Myocardial Mitochondria Structural and Functional Phenotype in a Murine Model of Diabetic Cardiomyopathy.
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Parker AM, Tate M, Prakoso D, Deo M, Willis AM, Nash DM, Donner DG, Crawford S, Kiriazis H, Granata C, Coughlan MT, De Blasio MJ, and Ritchie RH
- Abstract
People affected by diabetes are at an increased risk of developing heart failure than their non-diabetic counterparts, attributed in part to a distinct cardiac pathology termed diabetic cardiomyopathy. Mitochondrial dysfunction and excess reactive oxygen species (ROS) have been implicated in a range of diabetic complications and are a common feature of the diabetic heart. In this study, we sought to characterise impairments in mitochondrial structure and function in a recently described experimental mouse model of diabetic cardiomyopathy. Diabetes was induced in 6-week-old male FVB/N mice by the combination of three consecutive-daily injections of low-dose streptozotocin (STZ, each 55 mg/kg i.p.) and high-fat diet (42% fat from lipids) for 26 weeks. At study end, diabetic mice exhibited elevated blood glucose levels and impaired glucose tolerance, together with increases in both body weight gain and fat mass, replicating several aspects of human type 2 diabetes. The myocardial phenotype of diabetic mice included increased myocardial fibrosis and left ventricular (LV) diastolic dysfunction. Elevated LV superoxide levels were also evident. Diabetic mice exhibited a spectrum of LV mitochondrial changes, including decreased mitochondria area, increased levels of mitochondrial complex-III and complex-V protein abundance, and reduced complex-II oxygen consumption. In conclusion, these data suggest that the low-dose STZ-high fat experimental model replicates some of the mitochondrial changes seen in diabetes, and as such, this model may be useful to study treatments that target the mitochondria in diabetes., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2021 Parker, Tate, Prakoso, Deo, Willis, Nash, Donner, Crawford, Kiriazis, Granata, Coughlan, De Blasio and Ritchie.)
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- 2021
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39. Corrigendum: Characterising an Alternative Murine Model of Diabetic Cardiomyopathy.
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Tate M, Prakoso D, Willis AM, Peng C, Deo M, Qin CX, Walsh JL, Nash DM, Cohen CD, Rofe AK, Sharma A, Kiriazis H, Donner DG, De Haan JB, Watson AMD, De Blasio MJ, and Ritchie RH
- Abstract
[This corrects the article DOI: 10.3389/fphys.2019.01395.]., (Copyright © 2021 Tate, Prakoso, Willis, Peng, Deo, Qin, Walsh, Nash, Cohen, Rofe, Sharma, Kiriazis, Donner, De Haan, Watson, De Blasio and Ritchie.)
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- 2021
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40. Adeno-associated viral (AAV) vector-mediated therapeutics for diabetic cardiomyopathy - current and future perspectives.
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Prakoso D, Tate M, Blasio MJ, and Ritchie RH
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- Animals, Dependovirus genetics, Diabetes Mellitus therapy, Diabetic Cardiomyopathies therapy, Gene Transfer Techniques, Humans, Diabetes Mellitus genetics, Diabetic Cardiomyopathies genetics, Genetic Therapy methods, Genetic Vectors therapeutic use
- Abstract
Diabetes increases the prevalence of heart failure by 6-8-fold, independent of other comorbidities such as hypertension and coronary artery disease, a phenomenon termed diabetic cardiomyopathy. Several key signalling pathways have been identified that drive the pathological changes associated with diabetes-induced heart failure. This has led to the development of multiple pharmacological agents that are currently available for clinical use. While fairly effective at delaying disease progression, these treatments do not reverse the cardiac damage associated with diabetes. One potential alternative avenue for targeting diabetes-induced heart failure is the use of adeno-associated viral vector (AAV) gene therapy, which has shown great versatility in a multitude of disease settings. AAV gene therapy has the potential to target specific cells or tissues, has a low host immune response and has the possibility to represent a lifelong cure, not possible with current conventional pharmacotherapies. In this review, we will assess the therapeutic potential of AAV gene therapy as a treatment for diabetic cardiomyopathy., (© 2021 The Author(s).)
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- 2021
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41. Diastolic dysfunction in a pre-clinical model of diabetes is associated with changes in the cardiac non-myocyte cellular composition.
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Cohen CD, De Blasio MJ, Lee MKS, Farrugia GE, Prakoso D, Krstevski C, Deo M, Donner DG, Kiriazis H, Flynn MC, Gaynor TL, Murphy AJ, Drummond GR, Pinto AR, and Ritchie RH
- Subjects
- Animals, Blood Glucose metabolism, Diabetes Mellitus, Experimental metabolism, Diabetic Cardiomyopathies metabolism, Diabetic Cardiomyopathies pathology, Diabetic Cardiomyopathies physiopathology, Diastole, Diet, High-Fat, Fibroblasts metabolism, Hematopoietic Stem Cells metabolism, Hematopoietic Stem Cells pathology, Male, Mice, Monocytes metabolism, Monocytes pathology, Myocardium metabolism, Myocytes, Smooth Muscle metabolism, Myocytes, Smooth Muscle pathology, Streptozocin, Ventricular Dysfunction, Left metabolism, Ventricular Dysfunction, Left pathology, Ventricular Dysfunction, Left physiopathology, Diabetes Mellitus, Experimental complications, Diabetic Cardiomyopathies etiology, Fibroblasts pathology, Myocardium pathology, Ventricular Dysfunction, Left etiology, Ventricular Function, Left
- Abstract
Background: Diabetes is associated with a significantly elevated risk of cardiovascular disease and its specific pathophysiology remains unclear. Recent studies have changed our understanding of cardiac cellularity, with cellular changes accompanying diabetes yet to be examined in detail. This study aims to characterise the changes in the cardiac cellular landscape in murine diabetes to identify potential cellular protagonists in the diabetic heart., Methods: Diabetes was induced in male FVB/N mice by low-dose streptozotocin and a high-fat diet for 26-weeks. Cardiac function was measured by echocardiography at endpoint. Flow cytometry was performed on cardiac ventricles as well as blood, spleen, and bone-marrow at endpoint from non-diabetic and diabetic mice. To validate flow cytometry results, immunofluorescence staining was conducted on left-ventricles of age-matched mice., Results: Mice with diabetes exhibited hyperglycaemia and impaired glucose tolerance at endpoint. Echocardiography revealed reduced E:A and e':a' ratios in diabetic mice indicating diastolic dysfunction. Systolic function was not different between the experimental groups. Detailed examination of cardiac cellularity found resident mesenchymal cells (RMCs) were elevated as a result of diabetes, due to a marked increase in cardiac fibroblasts, while smooth muscle cells were reduced in proportion. Moreover, we found increased levels of Ly6C
hi monocytes in both the heart and in the blood. Consistent with this, the proportion of bone-marrow haematopoietic stem cells were increased in diabetic mice., Conclusions: Murine diabetes results in distinct changes in cardiac cellularity. These changes-in particular increased levels of fibroblasts-offer a framework for understanding how cardiac cellularity changes in diabetes. The results also point to new cellular mechanisms in this context, which may further aid in development of pharmacotherapies to allay the progression of cardiomyopathy associated with diabetes.- Published
- 2021
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42. Chikungunya outbreak in Karachi Pakistan 2016-2017: An analysis of viral isolates.
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Prakoso D, Barr K, Imtiaz K, Farooqi J, Khan E, and Long M
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- Disease Outbreaks, Humans, India epidemiology, Pakistan epidemiology, Phylogeny, Chikungunya Fever epidemiology
- Abstract
In December 2016 physicians in Karachi, Pakistan,witnessed an increase in patients presenting with febrile illness and severe polyarthralgia. Subsequently, chikungunya virus (CHIKV)) was isolated from three patients. This virus was sequenced and compared with other isolates of CHIKV obtained in India and Pakistan during recent outbreaks. Phylogenetic analysis indicated that the Karachi isolates were most similar to the East Central South African CHIKV lineage and showed sequence homology to isolates obtained in other parts of Pakistan and India. More importantly, two of the CHIKV isolates had a nucleotide substitution in the E1 gene corresponding to an amino acid change at chain F portion of the E1 protein.
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- 2021
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43. The Clinical Features of Co-circulating Dengue Viruses and the Absence of Dengue Hemorrhagic Fever in Pakistan.
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Khan E, Prakoso D, Imtiaz K, Malik F, Farooqi JQ, Long MT, and Barr KL
- Subjects
- Cross-Sectional Studies, Humans, Pakistan epidemiology, Dengue diagnosis, Dengue Virus genetics, Severe Dengue diagnosis
- Abstract
Dengue virus (DENV) is the most common and widespread arboviral infection worldwide. Though all four DENV serotypes cocirculate in nature, the clinicopathological framework of these serotypes is undefined in Pakistan. A cross-sectional, observational study was performed to document the circulation of various arboviruses in the Sindh region of Pakistan. Here we describe a population of patients diagnosed with DENV spanning a 2-year period. This study used an orthogonal system of NS1 antigen ELISA followed by RT-PCR for DENV detection and subtyping. A total of 168 NS1 positive patients were evaluated of which 91 patients were serotyped via RT-PCR. There was no significant difference between sex or age for infection risk and peak transmission occurred during the Autumn months. DENV2 was the most common serotype followed by DENV1 then DENV3, then DENV4. The data show that DENV1 patients were more likely to have abnormal liver function tests; DENV2 infected patients were more likely to exhibit arthralgia and neurological symptoms; DENV3 patients were more likely to complain of burning micturition and have elevated lymphocyte counts and low hematocrit; and DENV4 patients were more likely to report headaches and rash. Notably, no dengue hemorrhagic fever or other manifestations of severe dengue fever were present in patients with primary or secondary infections. We were able to identify significantly more NS1 antigen positive patients than RT-PCR. This study demonstrates that all four DENV serotypes are co-circulating and co-infecting in Pakistan., (Copyright © 2020 Khan, Prakoso, Imtiaz, Malik, Farooqi, Long and Barr.)
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- 2020
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44. Complete Genome Sequence of a Virulent Leptospira interrogans Serovar Copenhageni Strain, Assembled with a Combination of Nanopore and Illumina Reads.
- Author
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Llanes A, Prakoso D, Restrepo CM, and Rajeev S
- Abstract
Here, we present the complete genome sequence of a highly virulent Leptospira interrogans serovar Copenhageni strain isolated from a dog with severe leptospirosis. In this work, a gapless genome draft was assembled with a combination of Nanopore and Illumina data of relatively low coverage., (Copyright © 2020 Llanes et al.)
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- 2020
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45. Correction to: The Mitochondria-Targeted Methylglyoxal Sequestering Compound, MitoGamide, Is Cardioprotective in the Diabetic Heart.
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Tate M, Higgins GC, De Blasio MJ, Lindblom R, Prakoso D, Deo M, Kiriazis H, Park M, Baeza-Garza CD, Caldwell ST, Hartley RC, Krieg T, Murphy MP, Coughlan MT, and Ritchie RH
- Abstract
The article "The Mitochondria-Targeted Methylglyoxal Sequestering Compound, MitoGamide, Is Cardioprotective in the Diabetic Heart".
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- 2020
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46. Gene therapy targeting cardiac phosphoinositide 3-kinase (p110α) attenuates cardiac remodeling in type 2 diabetes.
- Author
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Prakoso D, De Blasio MJ, Tate M, Kiriazis H, Donner DG, Qian H, Nash D, Deo M, Weeks KL, Parry LJ, Gregorevic P, McMullen JR, and Ritchie RH
- Subjects
- Animals, Class I Phosphatidylinositol 3-Kinases metabolism, Dependovirus genetics, Dependovirus metabolism, Diabetes Mellitus, Experimental complications, Diabetes Mellitus, Type 2 etiology, Diabetic Cardiomyopathies etiology, Diabetic Cardiomyopathies pathology, Diet, High-Fat adverse effects, Endoplasmic Reticulum Stress, Fibrosis, Genetic Vectors genetics, Genetic Vectors metabolism, Male, Mice, Myocardium metabolism, Reactive Oxygen Species, Ventricular Remodeling, Class I Phosphatidylinositol 3-Kinases genetics, Diabetes Mellitus, Type 2 complications, Diabetic Cardiomyopathies therapy, Genetic Therapy methods
- Abstract
Diabetic cardiomyopathy is a distinct form of heart disease that represents a major cause of death and disability in diabetic patients, particularly, the more prevalent type 2 diabetes patient population. In the current study, we investigated whether administration of recombinant adeno-associated viral vectors carrying a constitutively active phosphoinositide 3-kinase (PI3K)(p110α) construct (rAAV6-caPI3K) at a clinically relevant time point attenuates diabetic cardiomyopathy in a preclinical type 2 diabetes (T2D) model. T2D was induced by a combination of a high-fat diet (42% energy intake from lipid) and low-dose streptozotocin (three consecutive intraperitoneal injections of 55 mg/kg body wt), and confirmed by increased body weight, mild hyperglycemia, and impaired glucose tolerance (all P < 0.05 vs. nondiabetic mice). After 18 wk of untreated diabetes, impaired left ventricular (LV) systolic dysfunction was evident, as confirmed by reduced fractional shortening and velocity of circumferential fiber shortening (Vcf
c , all P < 0.01 vs. baseline measurement). A single tail vein injection of rAAV6-caPI3K gene therapy (2×1011 vector genomes) was then administered. Mice were followed for an additional 8 wk before end point. A single injection of cardiac targeted rAAV6-caPI3K attenuated diabetes-induced cardiac remodeling by limiting cardiac fibrosis (reduced interstitial and perivascular collagen deposition, P < 0.01 vs. T2D mice) and cardiomyocyte hypertrophy (reduced cardiomyocyte size and Nppa gene expression, P < 0.001 and P < 0.05 vs. T2D mice, respectively). The diabetes-induced LV systolic dysfunction was reversed with rAAV6-caPI3K, as demonstrated by improved fractional shortening and velocity of circumferential fiber shortening (all P < 0.05 vs pre-AAV measurement). This cardioprotection occurred in combination with reduced LV reactive oxygen species ( P < 0.05 vs. T2D mice) and an associated decrease in markers of endoplasmic reticulum stress (reduced Grp94 and Chop , all P < 0.05 vs. T2D mice). Together, our findings demonstrate that a cardiac-selective increase in PI3K(p110α), via rAAV6-caPI3K, attenuates T2D-induced diabetic cardiomyopathy, providing proof of concept for potential translation to the clinic. NEW & NOTEWORTHY Diabetes remains a major cause of death and disability worldwide (and its resultant heart failure burden), despite current care. The lack of existing management of heart failure in the context of the poorer prognosis of concomitant diabetes represents an unmet clinical need. In the present study, we now demonstrate that delayed intervention with PI3K gene therapy (rAAV6-caPI3K), administered as a single dose in mice with preexisting type 2 diabetes, attenuates several characteristics of diabetic cardiomyopathy, including diabetes-induced impairments in cardiac remodeling, oxidative stress, and function. Our discovery here contributes to the previous body of work, suggesting the cardioprotective effects of PI3K(p110α) could be a novel therapeutic approach to reduce the progression to heart failure and death in diabetes-affected patients.- Published
- 2020
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47. Comparison of clinical presentation and out-comes of Chikungunya and Dengue virus infections in patients with acute undifferentiated febrile illness from the Sindh region of Pakistan.
- Author
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Shahid U, Farooqi JQ, Barr KL, Mahmood SF, Jamil B, Imitaz K, Azizullah Z, Malik FR, Prakoso D, Long MT, and Khan E
- Subjects
- Adolescent, Adult, Antibodies, Viral, Chikungunya Fever epidemiology, Chikungunya virus, Child, Coinfection epidemiology, Cross-Sectional Studies, Dengue epidemiology, Dengue Virus, Disease Outbreaks, Encephalitis Virus, Japanese, Female, Fever epidemiology, Humans, Immunoglobulin M, Male, Middle Aged, Pakistan epidemiology, Polymerase Chain Reaction, Prospective Studies, Treatment Outcome, West Nile virus, Young Adult, Zika Virus, Zika Virus Infection epidemiology, Chikungunya Fever diagnosis, Chikungunya Fever physiopathology, Dengue diagnosis, Dengue physiopathology, Fever diagnosis, Fever physiopathology
- Abstract
Background: Arboviruses are a cause of acute febrile illness and outbreaks worldwide. Recent outbreaks of Chikungunya virus (CHIKV) in dengue endemic areas have alarmed clinicians as unique clinical features differentiating CHIKV from Dengue virus (DENV) are limited. This has complicated diagnostic efforts especially in resource limited countries where lab testing is not easily available. Therefore, it is essential to analyse and compare clinical features of laboratory confirmed cases to assist clinicians in suspecting possible CHIKV infection at time of clinical presentation., Methodology: A prospective point prevalence study was conducted, with the hypothesis that not all patients presenting with clinical suspicion of dengue infections at local hospitals are suffering from dengue and that other arboviruses such as Chikungunya, West Nile viruses, Japanese Encephalitis virus and Zika virus are co-circulating in the Sindh region of Pakistan. Out-patients and hospitalized (in-patients) of selected district hospitals in different parts of Sindh province of Pakistan were recruited. Patients with presumptive dengue like illness (Syndromic diagnosis) by the treating physicians were enrolled between 2015 and 2017. Current study is a subset of larger study mentioned above. Here-in we compared laboratory confirmed cases of CHIKV and DENV to assess clinical features and laboratory findings that may help differentiate CHIKV from DENV infection at the time of clinical presentation., Results: Ninety-eight (n = 98) cases tested positive for CHIKV, by IgM and PCR and these were selected for comparative analysis with DENV confirmed cases (n = 171). On multivariable analysis, presence of musculoskeletal [OR = 2.5 (95% CI:1.6-4.0)] and neurological symptoms [OR = 4.4 (95% CI:1.9-10.2)], and thrombocytosis [OR = 2.2 (95% CI:1.1-4.0)] were associated with CHIKV infection, while atypical lymphocytes [OR = 8.3 (95% CI:4.2-16.7)] and thrombocytopenia [OR = 8.1 (95% CI:1.7-38.8)] were associated with DENV cases at time of presentation. These findings may help clinicians in differentiating CHIKV from DENV infection., Conclusion: CHIKV is an important cause of illness amongst patients presenting with acute febrile illness in Sindh region of Pakistan. Arthralgia and encephalitis at time of presentation among patients with dengue-like illness should prompt suspicion of CHIKV infection, and laboratory confirmation must be sought., Competing Interests: The authors have declared that no competing interests exist.
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- 2020
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48. Strain-Dependent Activity of Zika Virus and Exposure History in Serological Diagnostics.
- Author
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Barr KL, Schwarz ER, Prakoso D, Imtiaz K, Pu R, Morris Jr JG Jr, Khan E, and Long MT
- Abstract
Zika virus (ZIKV) circulates as two separate lineages, with significant genetic variability between strains. Strain-dependent activity has been reported for dengue virus, herpes simplex virus and influenza. Strain-dependent activity of subject specimens to a virus could be an impediment to serological diagnosis and vaccine development. In order to determine whether ZIKV exhibits strain-dependent activity when exposed to antibodies, we measured the neutralizing properties of polyclonal serum and three monoclonal antibodies (ZKA185, 753(3)C10, and 4G2) against three strains of ZIKV (MR-766, PRVABC59, and R103454). Here, MR-766 was inhibited almost 60% less by ZKA185 than PRVABC59 and R103454 ( p = 0.008). ZKA185 enhanced dengue 4 infection up to 50% ( p = 0.0058). PRVABC59 was not inhibited by mAb 753(3)C10 while MR-766 and R103453 were inhibited up to 90% ( p = 0.04 and 0.036, respectively). Patient serum, regardless of exposure history, neutralized MR-766 ~30%-40% better than PRVABC56 or R103454 ( p = 0.005-0.00007). The most troubling finding was the significant neutralization of MR-766 by patients with no ZIKV exposure. We also evaluated ZIKV antibody cross reactivity with various flaviviruses and found that more patients developed cross-reactive antibodies to Japanese encephalitis virus than the dengue viruses. The data here show that serological diagnosis of ZIKV is complicated and that qualitative neutralization assays cannot discriminate between flaviviruses.
- Published
- 2020
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49. Defining the Progression of Diabetic Cardiomyopathy in a Mouse Model of Type 1 Diabetes.
- Author
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De Blasio MJ, Huynh N, Deo M, Dubrana LE, Walsh J, Willis A, Prakoso D, Kiriazis H, Donner DG, Chatham JC, and Ritchie RH
- Abstract
The incidence of diabetes and its association with increased cardiovascular disease risk represents a major health issue worldwide. Diabetes-induced hyperglycemia is implicated as a central driver of responses in the diabetic heart such as cardiomyocyte hypertrophy, fibrosis, and oxidative stress, termed diabetic cardiomyopathy. The onset of these responses in the setting of diabetes has not been studied to date. This study aimed to determine the time course of development of diabetic cardiomyopathy in a model of type 1 diabetes (T1D) in vivo . Diabetes was induced in 6-week-old male FVB/N mice via streptozotocin (55 mg/kg i.p. for 5 days; controls received citrate vehicle). At 2, 4, 8, 12, and 16 weeks of untreated diabetes, left ventricular (LV) function was assessed by echocardiography before post-mortem quantification of markers of LV cardiomyocyte hypertrophy, collagen deposition, DNA fragmentation, and changes in components of the hexosamine biosynthesis pathway (HBP) were assessed. Blood glucose and HbA1c levels were elevated by 2 weeks of diabetes. LV and muscle (gastrocnemius) weights were reduced from 8 weeks, whereas liver and kidney weights were increased from 2 and 4 weeks of diabetes, respectively. LV diastolic function declined with diabetes progression, demonstrated by a reduction in E/A ratio from 4 weeks of diabetes, and an increase in peak A-wave amplitude, deceleration time, and isovolumic relaxation time (IVRT) from 4-8 weeks of diabetes. Systemic and local inflammation (TNFα, IL-1β, CD68) were increased with diabetes. The cardiomyocyte hypertrophic marker Nppa was increased from 8 weeks of diabetes while β-myosin heavy chain was increased earlier, from 2 weeks of diabetes. LV fibrosis (picrosirius red; Ctgf and Tgf- β gene expression) and DNA fragmentation (a marker of cardiomyocyte apoptosis) increased with diabetes progression. LV Nox2 and Cd36 expression were elevated after 16 weeks of diabetes. Markers of the LV HBP ( Ogt , Oga , Gfat1/2 gene expression), and protein abundance of OGT and total O-GlcNAcylation, were increased by 16 weeks of diabetes. This is the first study to define the progression of cardiac markers contributing to the development of diabetic cardiomyopathy in a mouse model of T1D, confirming multiple pathways contribute to disease progression at various time points., (Copyright © 2020 De Blasio, Huynh, Deo, Dubrana, Walsh, Willis, Prakoso, Kiriazis, Donner, Chatham and Ritchie.)
- Published
- 2020
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50. The Mitochondria-Targeted Methylglyoxal Sequestering Compound, MitoGamide, Is Cardioprotective in the Diabetic Heart.
- Author
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Tate M, Higgins GC, De Blasio MJ, Lindblom R, Prakoso D, Deo M, Kiriazis H, Park M, Baeza-Garza CD, Caldwell ST, Hartley RC, Krieg T, Murphy MP, Coughlan MT, and Ritchie RH
- Subjects
- Animals, Benzamides therapeutic use, Diabetic Cardiomyopathies genetics, Diabetic Cardiomyopathies metabolism, Diabetic Cardiomyopathies physiopathology, Disease Models, Animal, Insulin genetics, Male, Mice, Inbred C57BL, Mitochondria, Heart metabolism, Mutation, Amides pharmacology, Benzamides pharmacology, Cardiotonic Agents pharmacology, Diabetic Cardiomyopathies drug therapy, Diphenylamine pharmacology, Mitochondria, Heart drug effects, Pyruvaldehyde metabolism, Ventricular Function, Left drug effects
- Abstract
Purpose: Methylglyoxal, a by-product of glycolysis and a precursor in the formation of advanced glycation end-products, is significantly elevated in the diabetic myocardium. Therefore, we sought to investigate the mitochondria-targeted methylglyoxal scavenger, MitoGamide, in an experimental model of spontaneous diabetic cardiomyopathy., Methods: Male 6-week-old Akita or wild type mice received daily oral gavage of MitoGamide or vehicle for 10 weeks. Several morphological and systemic parameters were assessed, as well as cardiac function by echocardiography., Results: Akita mice were smaller in size than wild type counterparts in terms of body weight and tibial length. Akita mice exhibited elevated blood glucose and glycated haemoglobin. Total heart and individual ventricles were all smaller in Akita mice. None of the aforementioned parameters was impacted by MitoGamide treatment. Echocardiographic analysis confirmed that cardiac dimensions were smaller in Akita hearts. Diastolic dysfunction was evident in Akita mice, and notably, MitoGamide treatment preferentially improved several of these markers, including e'/a' ratio and E/e' ratio., Conclusions: Our findings suggest that MitoGamide, a novel mitochondria-targeted approach, offers cardioprotection in experimental diabetes and therefore may offer therapeutic potential for the treatment of cardiomyopathy in patients with diabetes.
- Published
- 2019
- Full Text
- View/download PDF
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