7 results on '"Priscilla Carrillo-Barragan"'
Search Results
2. Viral burden is associated with age, vaccination, and viral variant in a population-representative study of SARS-CoV-2 that accounts for time-since-infection-related sampling bias.
- Author
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Helen R Fryer, Tanya Golubchik, Matthew Hall, Christophe Fraser, Robert Hinch, Luca Ferretti, Laura Thomson, Anel Nurtay, Lorenzo Pellis, Thomas House, George MacIntyre-Cockett, Amy Trebes, David Buck, Paolo Piazza, Angie Green, Lorne J Lonie, Darren Smith, Matthew Bashton, Matthew Crown, Andrew Nelson, Clare M McCann, Mohammed Adnan Tariq, Claire J Elstob, Rui Nunes Dos Santos, Zack Richards, Xin Xhang, Joseph Hawley, Mark R Lee, Priscilla Carrillo-Barragan, Isobel Chapman, Sarah Harthern-Flint, COVID-19 Genomics UK (COG-UK) consortium, David Bonsall, and Katrina A Lythgoe
- Subjects
Immunologic diseases. Allergy ,RC581-607 ,Biology (General) ,QH301-705.5 - Abstract
In this study, we evaluated the impact of viral variant, in addition to other variables, on within-host viral burden, by analysing cycle threshold (Ct) values derived from nose and throat swabs, collected as part of the UK COVID-19 Infection Survey. Because viral burden distributions determined from community survey data can be biased due to the impact of variant epidemiology on the time-since-infection of samples, we developed a method to explicitly adjust observed Ct value distributions to account for the expected bias. By analysing the adjusted Ct values using partial least squares regression, we found that among unvaccinated individuals with no known prior exposure, viral burden was 44% lower among Alpha variant infections, compared to those with the predecessor strain, B.1.177. Vaccination reduced viral burden by 67%, and among vaccinated individuals, viral burden was 286% higher among Delta variant, compared to Alpha variant, infections. In addition, viral burden increased by 17% for every 10-year age increment of the infected individual. In summary, within-host viral burden increases with age, is reduced by vaccination, and is influenced by the interplay of vaccination status and viral variant.
- Published
- 2023
- Full Text
- View/download PDF
3. Enrichment and Characterisation of a Mixed-Source Ethanologenic Community Degrading the Organic Fraction of Municipal Solid Waste Under Minimal Environmental Control
- Author
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Priscilla Carrillo-Barragan, Bernard Bowler, Jan Dolfing, Paul Sallis, and Neil Duncan Gray
- Subjects
bioethanol ,organic municipal solid waste ,mixed culture fermentation ,resource recovery from waste ,bacterial community composition ,environmental biotechnology ,Microbiology ,QR1-502 - Abstract
The utilisation of the organic fraction of municipal solid waste as feedstock for bioethanol production could reduce the need for disposal of the ever-increasing amounts of municipal solid waste, especially in developing countries, and fits with the integrated goals of climate change mitigation and transport energy security. Mixed culture fermentation represents a suitable approach to handle the complexity and variability of such waste, avoiding expensive and vulnerable closed-control operational conditions. It is widely accepted that the control of pH in these systems can direct the fermentation process toward a desired fermentation product, however, little empirical evidence has been provided in respect of lignocellulosic waste substrates and different environmental inocula sources. We evaluated ethanol production from the organic fraction of municipal solid waste using five different inocula sources where lignocellulose degradation putatively occurs, namely, compost, woodland soil, rumen, cow faeces and anaerobic granular sludge, when incubated in batch microcosms at either initially neutral or acidic pH and under initially aerobic or anaerobic conditions. Although ethanol was produced by all the inocula tested, their performance was different in response to the imposed experimental conditions. Rumen and anaerobic granular sludge produced significantly the highest ethanol concentrations (∼30 mM) under initially neutral and acidic pH, respectively. A mixed-source community formed by mixing rumen and sludge (R + S) was then tested over a range of initial pH. In contrast to the differences observed for the individual inocula, the maximal ethanol production of the mixed community was not significantly different at initial pH of 5.5 and 7. Consistent with this broader functionality, the microbial community analyses confirmed the R + S community enriched comprised bacterial taxa representative of both original inocula. It was demonstrated that the interaction of initial pH and inocula source dictated ethanologenic activity from the organic fraction of municipal solid waste. Furthermore, the ethanologenic mixed-source community enriched, was comprised of taxa belonging to the two original inocula sources (rumen and sludge) and had a broader functionality. This information is relevant when diverse inocula sources are combined for mix culture fermentation studies as it experimentally demonstrates the benefits of diversity and function assembled from different inocula.
- Published
- 2019
- Full Text
- View/download PDF
4. Enzymatic digestion method development for long-term stored chitinaceous planktonic samples
- Author
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Priscilla Carrillo-Barragan, Heather Sugden, Catherine L. Scott, and Clare Fitzsimmons
- Subjects
Microplastics ,F700 ,Digestion ,Aquatic Science ,Oceanography ,Plankton ,Pollution ,Plastics ,Ecosystem ,Water Pollutants, Chemical ,Environmental Monitoring - Abstract
Different extraction methods have been proposed to study the ingestion of microplastics by marine organisms, including enzymatic digestion. While mussels have been the focus of research, crustaceans' enzymatic digestion has received little attention. An overlooked source of information for microplastic research is analysis of long-term time-series biotic samples. These collections are invaluable for the detection and monitoring of changes in ecosystems, especially those caused by anthropogenic factors. Here, crustacean larvae collected in two periods, 1985 and 2020, in the central North Sea were used to develop and optimise an effective and gentle enzymatic digestion method suitable for microplastic research. Sequential breakdown of these chitinaceous samples via a mechanical and surfactant (Sodium Dodecyl Sulphate 1% v/v) pre-treatment, followed by proteinase K (100 mU/mL) and chitinase (50 mU/mL) digestion, efficiently removed >96% of biomass of 1985 and 2020 samples. The optimised method was effective without interfering with the identification of naturally weathered microplastics via FTIR Spectroscopy.
- Published
- 2022
5. Enrichment and characterisation of a mixed-source ethanologenic community degrading the organic fraction of municipal solid waste under minimal environmental control
- Author
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Priscilla Carrillo Barragan
- Subjects
Bioethanol, Organic Municipal Solid Waste, Mixed Culture Fermentation, Resource recovery from waste, Bacterial community composition, Eco-biotechnology - Abstract
The utilisation of the organic fraction of municipal solid waste as feedstock for bioethanol production could reduce the need for disposal of the ever-increasing amounts of municipal solid waste, especially in developing countries, and fits with the integrated goals of climate change mitigation and transport energy security. Mixed culture fermentation represents a suitable approach to handle the complexity and variability of such waste, avoiding expensive and vulnerable closed-control operational conditions. It is widely accepted that the control of pH in these systems can direct the fermentation process toward a desired fermentation product, however, little empirical evidence has been provided in respect of lignocellulosic waste substrates and different environmental inocula sources. We evaluated ethanol production from the organic fraction of municipal solid waste using five different inocula sources where lignocellulose degradation putatively occurs, namely, compost, woodland soil, rumen, cow faeces and anaerobic granular sludge, when incubated in batch microcosms at either initially neutral or acidic pH and under initially aerobic or anaerobic conditions. Although ethanol was produced by all the inocula tested, their performance was different in response to the imposed experimental conditions. Rumen and anaerobic granular sludge produced significantly the highest ethanol concentrations (30 mM) under initially neutral and acidic pH, respectively. A mixed-source community formed by mixing rumen and sludge (R C S) was then tested over a range of initial pH. In contrast to the differences observed for the individual inocula, the maximal ethanol production of the mixed community was not significantly different at initial pH of 5.5 and 7. Consistent with this broader functionality, the microbial community analyses confirmed the R C S community enriched comprised bacterial taxa representative of both original inocula. It was demonstrated that the interaction of initial pH and inocula source dictated ethanologenic activity from the organic fraction of municipal solid waste. Furthermore, the ethanologenic mixed-source community enriched, was comprised of taxa belonging to the two original inocula sources (rumen and sludge) and had a broader functionality. This information is relevant when diverse inocula sources are combined for mix culture fermentation studies as it experimentally demonstrates the benefits of diversity and function assembled from different inocula.
- Published
- 2019
6. Enrichment and Characterisation of a Mixed-Source Ethanologenic Community Degrading the Organic Fraction of Municipal Solid Waste Under Minimal Environmental Control
- Author
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Bernard F.J. Bowler, Jan Dolfing, Paul J. Sallis, Priscilla Carrillo-Barragan, and Neil D. Gray
- Subjects
Microbiology (medical) ,Municipal solid waste ,organic municipal solid waste ,lcsh:QR1-502 ,resource recovery from waste ,engineering.material ,Raw material ,Microbiology ,lcsh:Microbiology ,03 medical and health sciences ,Rumen ,bacterial community composition ,environmental biotechnology ,Ethanol fuel ,030304 developmental biology ,Original Research ,bioethanol ,0303 health sciences ,030306 microbiology ,Chemistry ,Compost ,Pulp and paper industry ,Biofuel ,engineering ,Fermentation ,Microcosm ,mixed culture fermentation - Abstract
The utilisation of the organic fraction of municipal solid waste as feedstock for bioethanol production could reduce the need for disposal of the ever-increasing amounts of municipal solid waste, especially in developing countries, and fits with the integrated goals of climate change mitigation and transport energy security. Mixed culture fermentation represents a suitable approach to handle the complexity and variability of such waste, avoiding expensive and vulnerable closed-control operational conditions. It is widely accepted that the control of pH in these systems can direct the fermentation process toward a desired fermentation product, however, little empirical evidence has been provided in respect of lignocellulosic waste substrates and different environmental inocula sources. We evaluated ethanol production from the organic fraction of municipal solid waste using five different inocula sources where lignocellulose degradation putatively occurs, namely, compost, woodland soil, rumen, cow faeces and anaerobic granular sludge, when incubated in batch microcosms at either initially neutral or acidic pH and under initially aerobic or anaerobic conditions. Although ethanol was produced by all the inocula tested, their performance was different in response to the imposed experimental conditions. Rumen and anaerobic granular sludge produced significantly the highest ethanol concentrations (∼30 mM) under initially neutral and acidic pH, respectively. A mixed-source community formed by mixing rumen and sludge (R + S) was then tested over a range of initial pH. In contrast to the differences observed for the individual inocula, the maximal ethanol production of the mixed community was not significantly different at initial pH of 5.5 and 7. Consistent with this broader functionality, the microbial community analyses confirmed the R + S community enriched comprised bacterial taxa representative of both original inocula. It was demonstrated that the interaction of initial pH and inocula source dictated ethanologenic activity from the organic fraction of municipal solid waste. Furthermore, the ethanologenic mixed-source community enriched, was comprised of taxa belonging to the two original inocula sources (rumen and sludge) and had a broader functionality. This information is relevant when diverse inocula sources are combined for mix culture fermentation studies as it experimentally demonstrates the benefits of diversity and function assembled from different inocula.
- Published
- 2019
7. The stability of ethanol production from organic waste by a mixed culture depends on inoculum transfer time
- Author
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Priscilla Carrillo-Barragan, Jan Dolfing, Neil D. Gray, and Paul J. Sallis
- Subjects
0106 biological sciences ,H100 ,0303 health sciences ,Environmental Engineering ,Ethanol ,biology ,Chemistry ,Biomedical Engineering ,Bioengineering ,Biodegradable waste ,biology.organism_classification ,01 natural sciences ,03 medical and health sciences ,chemistry.chemical_compound ,Rumen ,Clostridium ,Microbial population biology ,Biofuel ,010608 biotechnology ,Fermentation ,Ethanol fuel ,Food science ,030304 developmental biology ,Biotechnology - Abstract
Mixed Culture Fermentation is a promising route for bioethanol production from organic wastes. Yet, achieving a stable ethanologenic activity in undefined mixed cultures remains a challenge. This work aimed to retain ethanol production from organic municipal solid waste by microbial communities enriched from sheep rumen and anaerobic sludge mixtures, under low process control (initially aerobic conditions and initial pH ≤ 5.5). To find a stable operating window, sequential inoculum transfer intervals were evaluated (14 and 3-days). Soluble fermentation product profiles and changes in the prokaryotic communities were monitored. The originally inoculated batches always produced high ethanol concentrations (60 mM; 0.070 LEtOH/Kgwaste), equivalent to 1/6 of the current corn grain-based ethanol industrial production process. Fermentative activity and community richness significantly decreased in both transfer times regimes tested. However, the 3-day transfer interval led to a stable community which consistently produced ethanol (30 mM) as its main soluble fermentation product. Originally inoculated and 3-day transferred communities consistently enriched for a solventogenic Clostridium and an acid-tolerant Pseudomonas species. Ethanologenesis, as a dominant catabolic process, is an inherent property of these mixed culture fermentations, and its maintenance across successive transfers is critically dependant on the inoculum transfer time.
- Published
- 2021
- Full Text
- View/download PDF
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