99 results on '"Puchta R"'
Search Results
2. Todesursachen und Aids-Erkrankungen Hämophiler in Deutschland (Umfrageergebnisse 1998)
- Author
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Schramm, W., Rommel, F., Kopel, A., Puchta, R., Scharrer, Inge, editor, and Schramm, Wolfgang, editor
- Published
- 2000
- Full Text
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3. Todesursachen und Aids-Erkrankungen Hämophiler in der Bundesrepublik Deutschland (Umfrageergebnisse Oktober 1997)
- Author
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Schramm, W., Puchta, R., Scharrer, Inge, editor, and Schramm, Wolfgang, editor
- Published
- 1999
- Full Text
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4. Erfahrungen in der psychosozialen Betreuung bei Hämophilie und HIV-Infektion
- Author
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Schneider, M. M., Fleischer-Kreipl, K. H., Rommel, F., Puchta, R., Ermann, M., Schramm, W., Landbeck, G., editor, Scharrer, Inge, editor, and Schramm, Wolfgang, editor
- Published
- 1992
- Full Text
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5. Verlauf der HIV-Infektion bei Anti-HIV-positiven Hämophilen
- Author
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Schramm, W., Pohlmann, H., Puchta, R., Rommel, F., Landbeck, G., editor, Scharrer, I., editor, and Schramm, W., editor
- Published
- 1991
- Full Text
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6. Electronic structure and aromaticity of [12]infinitene: A DFT study
- Author
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Đorđević Slađana, Ćoćić Dušan, Al-Yassiri Muntadar A.H., Radenković Slavko, and Puchta Ralph
- Subjects
nics ,infinitene ,reaction mechanism ,dft ,aromaticity ,Science - Abstract
The electronic structure and aromaticity of the [12]infinitene molecule (1) and its formation via the Mallory reaction were studied using density functional theory (DFT). The examined reaction is based on a stepwise cyclization process. The nucleus-independent chemical shifts (NICS) were used to assess the aromatic character of the chemical species involved in the examined reactions. In addition, NICS-Scan, 2D and 3D multidimensional off-nucleus siso(r) magnetic shielding scans were also employed to examine the aromaticity of 1. It was found that the formation of 1 is an endothermal process, as a result of the opposed stabilizing effects of aromaticity and destabilizing effects of planarity distortions found in molecules included in the considered reaction.
- Published
- 2023
7. 25 years of NICS - much more than nothing!
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Puchta Ralph, Đorđević Slađana, Radenković Slavko, Jiao Haijun, and van Eikema Hommes Nico J.R.
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aromaticity ,history ,anniversary ,Chemistry ,QD1-999 - Abstract
The famous aromaticity index NICS (nucleus independent chemical shift) was introduced 25 years ago. The authors use this anniversary for a short and to some degree personal retrospective.
- Published
- 2022
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8. Shpol’skii spectroscopy and vibrational analysis of [N]phenylenes
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Dosche, Carsten, Kumke, Michael Uwe, Ariese, F., Bader, Arjen N., Gooijer, C., Dosa, P. I., Han, S., Miljanic, O. S., Vollhardt, K. Peter C., Puchta, R., and Eikema Hommes, N. J. R. van
- Subjects
ddc:540 ,Physics::Atomic and Molecular Clusters ,Institut für Chemie ,Physics::Chemical Physics - Abstract
Vibrationally resolved fluorescence spectra of four angular [N]phenylenes were recorded with laser excited Shpol’skii spectroscopy (LESS) in an n-octane matrix at 10 K. In general, the same vibrational frequencies were observed in the fluorescence excitation and emission spectra, indicating that the geometries of ground and electronically excited state are very similar. Because of intensity borrowing from the S2 state, vibrations of two different symmetries were observed in the fluorescence excitation spectra of angular [3]phenylene and zig-zag[5]phenylene. This finding allowed the location of the S2 state for these compounds. DFT calculations(RB3LYP/6-31G*) of the ground state vibrational frequencies were made. The calculated vibrational modes were in reasonably good agreement with the experimental data. A new very low-frequency vibration of approximately 100 cm-1 was predicted and experimentally confirmed for all [N]phenylenes investigated. This vibration seems to be unique for [N]phenylenes and is attributed to an in-plane movement of the carbon backbone.
- Published
- 2007
9. Deuteration effects on the vibronic structure of the fluorescence spectra and the internal conversion rates of triangular [4]Phenylene
- Author
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Dosche, Carsten, Kumke, Michael Uwe, Löhmannsröben, Hans-Gerd (Prof. Dr.), Ariese, F., Bader, Arjen N., Gooijer, C., Miljanic, O. S., Iwamoto, M., Vollhardt, K. Peter C., Puchta, R., and van Eikema Hommes, N. J. R.
- Subjects
ddc:540 ,Institut für Chemie - Abstract
Deuteration effects on the vibronic structure of the emission and excitation spectra of triangular [4]phenylene (D3h[4]phenylene) were studied using laser-excited Shpolskii spectroscopy (LESS) in an octane matrix at 4.2 K. For correct assignment of the vibrational modes, the experimental results were compared with calculated frequencies (B3LYP/6-31G*). CH vibrations were identified by their characteristic isotopic shifts in the spectra of deuterated triangular [4]phenylenes. Two CC stretching modes, at 100 cm–1 and 1176 cm–1, suitable as probes for bond strength changes in the excited state, were identified. The isotope effect on the internal conversion rates of triangular [4]phenylene was evaluated from measurements of temperature dependent lifetime. Isotope dependency and the magnitude of the internal conversion rates indicate that internal conversion in triangular [4]phenylene is most likely induced by CH vibrations. The results obtained by LESS and lifetime measurements were compared with PM3 PECI calculations of the excited state structure. The theoretical results and the relation between ground and excited state vibration energies of the 1176 cm–1 probe vibration indicate a reduction of bond alternation of the central cyclohexatriene ring in the excited state.
- Published
- 2007
10. Deuteration effects on the vibronic structure of the fluorescence spectra and the internal conversion rates of triangular [4]phenylene
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Dosche, C., primary, Kumke, M. U., additional, Löhmannsröben, H.-G., additional, Ariese, F., additional, Bader, A. N., additional, Gooijer, C., additional, Miljanić, O. Š., additional, Iwamoto, M., additional, Vollhardt, K. P. C., additional, Puchta, R., additional, and van Eikema Hommes, N. J. R., additional
- Published
- 2004
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11. Shpol'skii spectroscopy and vibrational analysis of [N]phenylenes
- Author
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Dosche, C., primary, Kumke, M. U., additional, Ariese, F., additional, Bader, A. N., additional, Gooijer, C., additional, Dosa, P. I., additional, Han, S., additional, Miljani?, O. ?., additional, Vollhardt, K. P. C., additional, Puchta, R., additional, and van Eikema Hommes, N. J. R., additional
- Published
- 2003
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12. Waschmittel, Waschhilfsmittel, Reinigungsmittel - Heute
- Author
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Puchta, R., primary and Krings, P., additional
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- 1993
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13. A New Generation of Softeners
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Puchta, R., primary and Krings, P., additional
- Published
- 1993
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14. Dissected Nucleus-Independent Chemical Shift Analysis of π-Aromaticity and Antiaromaticity
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Schleyer, P. von Rague, Manoharan, M., Wang, Z.-X., Kiran, B., Jiao, H., Puchta, R., Hommes, van Eikema, and R., N. J.
- Abstract
Analysis of the basic π-aromatic (benzene) and antiaromatic (cyclobutadiene) systems by dissected nucleus-independent chemical shifts (NICS) shows the contrasting diatropic and paratropic effects, but also reveals subtleties and unexpected details. - Published
- 2001
15. Zum Wirkungsmechanismus kationischer Tenside bei der Waschbad- und Spülbadavivage - 1. Teil: Sorption quartärer Ammoniumverbindungen an Textilien
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Bräuer, K., Fehr, H., and Puchta, R.
- Published
- 1980
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16. Can Metallocryptands act as Proton Cages? - DFT Study of Proton Affinity in [2.2.2]-analogous Metallocryptands
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Puchta, R. and Andreas Scheurer
17. Computational study on novel RhCp X (X = CF 3 , SiF 3 , CCl 3 , SO 3 H) as promising catalysts in the [3 + 2] azide-alkyne cycloaddition reaction: insights into mechanistic pathways and reactivity.
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Khairbek AA, Abd-Al Hakim Badawi M, Alzahrani AY, Puchta R, and Thomas R
- Abstract
This computational study investigated the catalytic efficiency of novel RhCp
X complexes (X = CF3 , SiF3 , CCl3 , SO3 H) in [3 + 2] azide-alkyne cycloaddition reactions via density functional theory (MN12-L/Def2-SVP). Through quantum mechanical approaches, we explore the impact of different substituents on the Cp* ligand on the mechanism, selectivity, and reactivity of these Rh-based catalysts. Non-covalent interaction (NCI) and reduced density gradient (RDG) analyses, along with frontier molecular orbital (FMO) and Hirshfeld atomic charge analyses, were utilized to assess ligand stability and catalytic performance. The results show that RhCpSO offers the highest stability and reactivity, favoring the formation of 1,5-disubstituted triazoles. Our findings highlight the potential of these novel RhCp3 HX complexes as effective catalysts in synthetic and pharmaceutical applications.- Published
- 2025
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18. Investigation of the complete encapsulation process of the noble gases by cryptophanes.
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Ćoćić D, Yang L, Puchta R, Shi T, and van Eldik R
- Abstract
Based on DFT calculations (ωB97XD/def2-SVP/SVPfit), the ability and mechanism of noble gas encapsulation by series of cryptophanes were investigated. The focus was set to study the influence of different functionalization groups placed at the "gates" of cryptophanes cavity entrance by which the energy criteria were chosen as a main indicator for selective encapsulation of noble gases. Chosen functionalization groups were CH
3 , OCH3 , OH, NH2 , and Cl, and the encapsulation process of these cryptophanes was compared to a cryptophane without any functionalization group on its outer rim. Those groups were selected based on their different chemical properties and based on their size which will subsequently put additional steric restrictions on the cavity entrance. Chosen functionalization groups, beside their steric influence on the energy barrier magnitude, influence also the gating process through its chemical nature by which they can put an additional stabilization on noble gases encapsulation transition states enhancing the encapsulation process. Objective of this study was clearly to get better insights on the influence of those functional groups on the whole encapsulation process of noble gases. Large-size noble gases (Xe and Rn) from all noble gases are best accommodated in the cavities of selected cryptophanes, on the other hand these noble gases require to pass the highest energy barrier through the gating process. From the series of investigated cryptophanes, the cryptophane with the OCH3 functionalization group has been identified as the one with the best capabilities to host investigated noble gases, but on the other side this cryptophane puts the highest energy criteria required for the previous gating process., (© 2024 Wiley Periodicals LLC.)- Published
- 2025
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19. A Personal Account on Inorganic Reaction Mechanisms.
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Polaczek J, Kieca K, Oszajca M, Impert O, Katafias A, Chatterjee D, Ćoćić D, Puchta R, Stochel G, Hubbard CD, and van Eldik R
- Abstract
The presented Review is focused on the latest research in the field of inorganic chemistry performed by the van Eldik group and his collaborators. The first part of the manuscript concentrates on the interaction of nitric oxide and its derivatives with biologically important compounds. We summarized mechanistic information on the interaction between model porphyrin systems (microperoxidase) and NO as well as the recent studies on the formation of nitrosylcobalamin (CblNO). The following sections cover the characterization of the Ru(II)/Ru(III) mixed-valence ion-pair complexes, including Ru(II)/Ru(III)(edta) complexes. The last part concerns the latest mechanistic information on the DFT techniques applications. Each section presents the most important results with the mechanistic interpretations., (© 2023 The Authors. The Chemical Record published by The Chemical Society of Japan and Wiley-VCH GmbH.)
- Published
- 2023
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20. Predicting a New Δ-Proton Sponge-Base of 4,12-Dihydrogen-4,8,12-triazatriangulene through Proton Affinity, Aromatic Stabilization Energy, and Aromatic Magnetism.
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Al-Yassiri MAH and Puchta R
- Abstract
Herein, we report designing a new Δ (delta-shaped) proton sponge base of 4,12-dihydrogen-4,8,12-triazatriangulene (compound 1) and calculating its proton affinity (PA), aromatic stabilization, natural bond orbital (NBO), electron density ρ(r), Laplacian of electron density ∇
2 ρ(r), (2D-3D) multidimensional off-nucleus magnetic shielding (σzz (r) and σiso (r)), and scanning nucleus-independent chemical shift (NICSzz and NICS). Density functional theory (DFT) at B3LYP/6-311+G(d,p), ωB97XD/6-311+G(d,p), and PW91/def2TZVP were used to compute the magnetic shielding variables. In addition, relevant bases like pyridine, quinoline, and acridine were also studied and compared. The protonation of compound 1 yields a highly symmetric carbocation of three Hückel benzenic rings. Comparing our findings of the studied molecules showed that compound 1 precedes others in PA, aromatic isomerization stabilization energy, and basicity. Therefore, the basicity may be enhanced when a conjugate acid gains higher aromatic features than its unprotonated base. Both multidimensional σzz (r) and σiso (r) off-nucleus magnetic shieldings outperformed electron-based techniques and can visually monitor changes in aromaticity that occur by protonation. The B3LYP/6-311+G(d,p), ωB97XD/6-311+G(d,p), and PW91/def2TZVP levels showed no significant differences in detailing isochemical shielding surfaces., (© 2023 The Authors. ChemPhysChem published by Wiley-VCH GmbH.)- Published
- 2023
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21. Selective Noble Gas Inclusion in Pentagon-Dodecahedral X 20 -Cages.
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Weinert C, Ćoćić D, Puchta R, and van Eldik R
- Abstract
Using DFT-based computational chemistry calculations (ωB97XD/def2-tzvp//ωB97XD/def2-svp/svpfit + ZPE(ωB97XD/def2-svp/svpfit)), binding energies of noble gases encapsulated in a series of dodecahedrane molecules (general formula: X
20 H20 where X = C, Si, Ge, Sn and Pb, and X20 where X = N, P, As, Sb and Bi) were calculated to learn about the noble gas selectivity. Based on calculated binding energies, the Sn20 H20 cage can best accommodate noble gases with a medium size radius (Ar and Kr), while the Pb20 H20 dodecahedrane cage is best suited for noble gases with the larger radii (Xe and Rn). On the other hand, from the elements of the V main group of the periodic table, the Bi20 cage has shown the best results to selectively encapsulate Ar and Kr, with the amounts of energy being released being -5.24 kcal/mol and -6.13 kcal/mol, respectively. By monitoring the geometric changes of all here-reported host cages upon encapsulating the noble gas guest, the host has shown minor to no flexibility, testifying to the high rigidity of the dodecahedrane structure which was further reflected in very high encapsulating energies.- Published
- 2023
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22. Ligand exchange at tetra-coordinated beryllium centres.
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Buchner MR, Ćoćić D, Ivlev SI, Spang N, Müller M, and Puchta R
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Mono and dinuclear phosphine complexes of beryllium halides [(PMe
3 )2 BeX2 ], [(PMe3 )BeX2 ]2 and [(PCy3 )BeX2 ]2 (X = Cl, Br, I) were synthesised and characterised via NMR and IR spectroscopy as well as single crystal X-ray diffraction experiments. Dissociation and ligand exchange processes at these complexes were investigated through variable temperature NMR experiments in combination with line shape analysis and complemented by quantum chemical calculations. The PMe3 dissociation energy is smallest in [(PMe3 )2 BeCl2 ], while PMe3 exchange is similar in energy in all mononuclear [(PMe3 )2 BeX2 ] complexes and follows an interchange mechanism. While [(PMe3 )BeX2 ]2 dissociates homolytically, [(PCy3 )BeX2 ]2 cleaves one phosphine ligand. These distinctive dissociation processes account for the different chemical behaviour of these complexes.- Published
- 2023
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23. Dimorpholinoacetylene and Its Use for the Synthesis of Tetraaminocyclobutadiene Species.
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Körner L, Ho LP, Puchta R, Stanger A, and Tamm M
- Subjects
- Molecular Structure, Crystallography, X-Ray
- Abstract
The new diaminoacetylene (DAA) dimorpholinoacetylene (3) was prepared from 1,1-dimorpholinoethene (1) by bromination to form the dibromoketene aminal 2, which upon lithiation afforded 3 through a Fritsch-Buttenberg-Wiechell rearrangement. Heating 3 at elevated temperatures resulted in a complete conversion into the dimer 1,1,2,4-tetramorpholino-1-buten-3-yne (4), which was used for the synthesis of four-membered cyclic bent allene (CBA) transition-metal complexes of the type [(CBA)ML
n ] (5-7; MLn =AuCl, RhCl(COD), RhCl(CO)2 ; CBA=1,3,4,4-tetramorpholino-1,2-cyclobutadiene; COD=1,5-cyclooctadiene). The reaction of 3 with tetraethylammonium bromide gave 1,2,3,4-tetramorpholinocyclobutenylium bromide (8), which reacted with bromine to form 1,2,3,4-tetra(morpholino)cyclobutenediylium bis(tribromide) (9). Compound 9 represents the first fully characterized compound containing a tetraaminocyclobutadiene dication and displays a nearly planar C4 N4 core as shown by X-ray diffraction analysis. Detailed quantum chemical calculations were performed to assess the aromaticity of tetraaminocyclubutadiene dications by employing the Nucleus Independent Chemical Shift (NICS) method and current density analysis., (© 2022 The Authors. Chemistry - A European Journal published by Wiley-VCH GmbH.)- Published
- 2022
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24. Investigation of water substitution at Ru II complexes by conceptual density function theory approach.
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Ćoćić D, Petrović B, Puchta R, Chrzanowska M, Katafias A, and van Eldik R
- Abstract
In this paper, we investigated water exchange reactions and substitution of aqua Ru
II complexes of general formula [Ru(terpy)(N^N)(H2 O)]2+ (where N^N = ethylenediamine (en), 1,2-(aminomethyl)pyridine (ampy) and 2,2'-bipyridine (bipy)) by ammonia and thioformaldehyde. These reactions were studied in detail by applying conceptual density functional theory. This approach enabled us to gain further insight into the underlying reaction mechanism at the microscopic level (involving only direct participants of the reaction, without the influence of the solvent) and to put the concept of reaction mechanism on a quantitative basis. The course of the chemical reaction along the reaction coordinate ξ, is rationalized in terms of reaction energy, force, dipole moment, and reaction electronic flux (REF). The results yield and characterize the significant influence of an intermolecular hydrogen bond formed between the entering and the spectator ligand to the overall energy barrier of the reactions., (© 2022 The Authors. Journal of Computational Chemistry published by Wiley Periodicals LLC.)- Published
- 2022
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25. Quinol-containing ligands enable high superoxide dismutase activity by modulating coordination number, charge, oxidation states and stability of manganese complexes throughout redox cycling.
- Author
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Senft L, Moore JL, Franke A, Fisher KR, Scheitler A, Zahl A, Puchta R, Fehn D, Ison S, Sader S, Ivanović-Burmazović I, and Goldsmith CR
- Abstract
Reactivity assays previously suggested that two quinol-containing MRI contrast agent sensors for H
2 O2 , [Mn( H2qp1 )(MeCN)]2+ and [Mn( H4qp2 )Br2 ], could also catalytically degrade superoxide. Subsequently, [Zn( H2qp1 )(OTf)]+ was found to use the redox activity of the H2qp1 ligand to catalyze the conversion of O2 ˙- to O2 and H2 O2 , raising the possibility that the organic ligand, rather than the metal, could serve as the redox partner for O2 ˙- in the manganese chemistry. Here, we use stopped-flow kinetics and cryospray-ionization mass spectrometry (CSI-MS) analysis of the direct reactions between the manganese-containing contrast agents and O2 ˙- to confirm the activity and elucidate the catalytic mechanism. The obtained data are consistent with the operation of multiple parallel catalytic cycles, with both the quinol groups and manganese cycling through different oxidation states during the reactions with superoxide. The choice of ligand impacts the overall charges of the intermediates and allows us to visualize complementary sets of intermediates within the catalytic cycles using CSI-MS. With the diquinolic H4qp2 , we detect Mn(iii)-superoxo intermediates with both reduced and oxidized forms of the ligand, a Mn(iii)-hydroperoxo compound, and what is formally a Mn(iv)-oxo species with the monoquinolate/mono- para -quinone form of H4qp2 . With the monoquinolic H2qp1 , we observe a Mn(ii)-superoxo ↔ Mn(iii)-peroxo intermediate with the oxidized para -quinone form of the ligand. The observation of these species suggests inner-sphere mechanisms for O2 ˙- oxidation and reduction that include both the ligand and manganese as redox partners. The higher positive charges of the complexes with the reduced and oxidized forms of H2qp1 compared to those with related forms of H4qp2 result in higher catalytic activity ( kcat ∼ 108 M-1 s-1 at pH 7.4) that rivals those of the most active superoxide dismutase (SOD) mimics. The manganese complex with H2qp1 is markedly more stable in water than other highly active non-porphyrin-based and even some Mn(ii) porphyrin-based SOD mimics., Competing Interests: The authors declare no competing financial interest., (This journal is © The Royal Society of Chemistry.)- Published
- 2021
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26. Experimental and quantum chemical study оn the DNA/protein binding and the biological activity of a rhodium(iii) complex with 1,2,4-triazole as an inert ligand.
- Author
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Petrović A, Živanović M, Puchta R, Ćoćić D, Scheurer A, Milivojevic N, and Bogojeski J
- Subjects
- Animals, Cattle, Coordination Complexes chemical synthesis, Fluorescence Resonance Energy Transfer, Humans, Ligands, Molecular Structure, Rhodium chemistry, Triazoles chemistry, Coordination Complexes chemistry, DNA chemistry, Molecular Docking Simulation, Quantum Theory, Serum Albumin chemistry
- Abstract
The synthesis and structural characterization of a newly synthesized mononuclear rhodium(iii) complex, Rhtrz, with a ligand (2,2,6-bis((4S,7R)-7,8,8-trimethyl-4,5,6,7-tetrahydro-1H-4,7-methanoindazol-3-yl)pyridine) and a ligand of 1,2,4-triazole, are presented in this paper. The kinetic interactions of the Rhtrz complex with essential biomolecules such as 5-GMP, L-Met, and GSH were examined. The study of the biological interactions was focused on the binding properties of the Rhtrz complex with CT-DNA and serum albumin. These interactions were investigated using UV-vis spectrophotometry, fluorescence spectroscopy, viscosity measurements, thermal denaturation studies, and electrophoresis. Fluorescence competition experiments with site-markers for BSA were used to locate the binding site of the Rhtrz-complex to the BSA. Molecular docking studies were carried out to obtain detailed binding information of the complex with CT-DNA, BSA, and HSA. Furthermore, the apparent distance between the donor (HSA) and acceptor (Rhtrz) was determined using fluorescence resonance energy transfer (FRET). The thermodynamic properties and relative stabilities of the Rhtrz complex were examined, constructing the two model equation by DFT calculations (B3LYP(CPCM)/LANL2DZp). In vitro cytotoxicity and redox status on the human epithelial colorectal cancer cell line (HCT-116) and healthy human fibroblast cell line (MRC-5) were also investigated.
- Published
- 2020
- Full Text
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27. Inorganic reaction mechanisms. A personal journey.
- Author
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Hubbard CD, Chatterjee D, Oszajca M, Polaczek J, Impert O, Chrzanowska M, Katafias A, Puchta R, and van Eldik R
- Abstract
This review covers highlights of the work performed in the van Eldik group on inorganic reaction mechanisms over the past two decades in the form of a personal journey. Topics that are covered include, from NO to HNO chemistry, peroxide activation in model porphyrin and enzymatic systems, the wonder-world of Ru
III (edta) chemistry, redox chemistry of Ru(iii) complexes, Ru(ii) polypyridyl complexes and their application, relevant physicochemical properties and reaction mechanisms in ionic liquids, and mechanistic insight from computational chemistry. In each of these sections, typical examples of mechanistic studies are presented in reference to related work reported in the literature.- Published
- 2020
- Full Text
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28. Synthesis of Camphor-Derived Bis(pyrazolylpyridine) Rhodium(III) Complexes: Structure-Reactivity Relationships and Biological Activity.
- Author
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Petrović A, Milutinović MM, Petri ET, Živanović M, Milivojević N, Puchta R, Scheurer A, Korzekwa J, Klisurić OR, and Bogojeski J
- Subjects
- Animals, Antineoplastic Agents chemical synthesis, Antineoplastic Agents chemistry, Antineoplastic Agents pharmacology, Camphor chemical synthesis, Camphor chemistry, Cattle, Coordination Complexes chemical synthesis, Coordination Complexes chemistry, DNA chemistry, Density Functional Theory, HCT116 Cells, Humans, Intercalating Agents chemical synthesis, Intercalating Agents chemistry, Intercalating Agents pharmacology, Kinetics, Ligands, Models, Chemical, Molecular Docking Simulation, Molecular Structure, Pyrazoles chemical synthesis, Pyrazoles chemistry, Pyridines chemical synthesis, Pyridines chemistry, Serum Albumin, Bovine chemistry, Camphor analogs & derivatives, Camphor pharmacology, Coordination Complexes pharmacology, Pyrazoles pharmacology, Pyridines pharmacology, Rhodium chemistry
- Abstract
Two novel rhodium(III) complexes, namely, [Rh
III (X)Cl3 ] (X = 2 2,6-bis((4 S,7 R)-7,8,8-trimethyl-4,5,6,7-tetrahydro-1 H-4,7-methanoindazol-3-yl)pyridine or 2,6-bis((4 S,7 R)-1,7,8,8-tetramethyl-4,5,6,7-tetrahydro-1 H-4,7-methanoindazol-3-yl)pyridine), were synthesized from camphor derivatives of a bis(pyrazolylpyridine), tridentate nitrogen-donor chelate system, giving [RhIII (H2 L*)Cl3 ] (1a) and [RhIII (Me2 L*)Cl3 ] (1b). A rhodium(III) terpyridine (terpy) ligand complex, [RhIII (terpy)Cl3 ] (1c), was also synthesized. By single-crystal X-ray analysis, 1b crystallizes in an orthorhombic P21 21 21 system, with two molecules in the asymmetric unit. Tridentate coordination by the N,N,N-donor localizes the central nitrogen atom close to the rhodium(III) center. Compounds 1a and 1b were reactive toward l-methionine (l-Met), guanosine-5'-monophosphate (5'-GMP), and glutathione (GSH), with an order of reactivity of 5'-GMP > GSH > l-Met. The order of reactivity of the RhIII complexes was: 1b> 1a > 1c. The RhIII complexes showed affinity for calf thymus DNA and bovine serum albumin by UV-vis and emission spectral studies. Furthermore, 1b showed significant in vitro cytotoxicity against human epithelial colorectal carcinoma cells. Since the RhIII complexes have similar coordination modes, stability differences were evaluated by density functional theory (DFT) calculations (B3LYP(CPCM)/LANL2DZp). With (H2 L*) and (terpy) as model ligands, DFT calculations suggest that both tridentate ligand systems have similar stability. In addition, molecular docking suggests that all test compounds have affinity for the minor groove of DNA, while 1b and 1c have potential for DNA intercalation.- Published
- 2019
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29. New monofunctional platinum(II) and palladium(II) complexes: Studies of the nucleophilic substitution reactions, DNA/BSA interaction, and cytotoxic activity.
- Author
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Ćoćić D, Jovanović S, Radisavljević S, Korzekwa J, Scheurer A, Puchta R, Baskić D, Todorović D, Popović S, Matić S, and Petrović B
- Subjects
- Antineoplastic Agents chemistry, Antineoplastic Agents pharmacology, Apoptosis drug effects, Cell Line, Tumor, Coordination Complexes chemistry, Coordination Complexes pharmacology, Ethidium analogs & derivatives, Ethidium chemistry, HeLa Cells, Humans, Serum Albumin, Bovine chemistry, Spectrometry, Fluorescence, DNA chemistry, Palladium chemistry, Platinum chemistry
- Abstract
Four new complexes [Pd(H
2 LtBu )Cl]Cl (Pd1), [Pt(H2 LtBu )Cl]Cl (Pt1), [Pd(Me2 LtBu )Cl]Cl (Pd2) and [Pt(Me2 LtBu )Cl]Cl (Pt2) (where H2 LtBu = 2,6-bis(5-(tert-butyl)-1H-pyrazol-3-yl)pyridine and Me2 LtBu = 2,6-bis(5-(tert-butyl)-1-methyl-1H-pyrazol-3-yl)pyridine) were synthesized and characterized by elemental microanalysis, IR,1 H NMR and ESI-MS methods. The reactivity of complexes towards thiourea (Tu), l-methionine (l-Met), l-cysteine (l-Cys) and guanosine-5'-monophosphate (5'-GMP) was investigated. The obtained order was established as follows: Tu > l-Cys > l-Met > 5'-GMP. Complexes Pd1 and Pt1, that contain H2 LtBu as chelator, showed higher reactivity towards biomolecules than those with Me2 LtBu . The interaction of complexes with calf thymus DNA (CT-DNA) and bovine serum albumin (BSA) was studied by UV-Vis and fluorescence spectroscopy. The results have shown that complexes can bind to DNA exhibiting high binding constants (Kb = 104 M-1 ). Obtained results during the examination of competitive reaction with ethidium bromide (EB) showed that complexes can replace EB-bound DNA. High values of binding constants indicate good binding affinity of complexes towards BSA. We evaluated the stability differences between complexes based on terpy as well as H2 LtBu /Me2 LtBu by DFT calculations (B3LYP(CPCM)/LANL2DZp), showing that both tridentate ligand systems lead to complexes of similar stability. The results of biological testing showed that all complexes exert moderate to high selective cytotoxicity, inducing apoptosis and autophagy in HeLa and PANC-1 tumor cell lines. Pd1 exhibited the strongest cytotoxic effect. Finally, cell cycle analysis showed that in HeLa cells Pd1, Pd2 and Pt1 induced accumulation of cells in S phase, whereas in PANC-1 cells Pd2 and Pt1 induced G2/M cycle arrest and Pd1 induced G0/G1 arrest., (Copyright © 2018 Elsevier Inc. All rights reserved.)- Published
- 2018
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30. Redox Behavior of a Dinuclear Ruthenium(II) Complex Bearing an Uncommon Bridging Ligand: Insights from High-Pressure Electrochemistry.
- Author
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Dürr M, Klein J, Kahnt A, Becker S, Puchta R, Sarkar B, and Ivanović-Burmazović I
- Abstract
A dinuclear ruthenium complex bridged by 2,3,5,6-pyrazinetetracarboxylic acid (μ-LH
2 2- ) was synthesized and characterized by X-ray crystallography, cyclic voltammetry under ambient and elevated pressures, electron paramagnetic resonance (EPR) and UV/vis-NIR (NIR = near-infrared) spectroelectrochemistry, pulse radiolysis, and computational methods. We probed for the first time in the field of mixed-valency the use of high-pressure electrochemical methods. The investigations were directed toward the influence of the protonation state of the bridging ligand on the electronic communication between the ruthenium ions, since such behavior is interesting in terms of modulating redox chemistry by pH. Starting from the [RuII (μ-LH2 2- )RuII ]0 configuration, which shows an intense metal-to-ligand charge transfer absorption band at 600 nm, cyclic voltammetry revealed a pH-independent, reversible one-electron reduction and a protonation-state-dependent (proton coupled electron transfer, PCET) reversible oxidation. Deeper insight into the electrode reactions was provided by pressure-dependent cyclic voltammetry up to 150 MPa, providing insight into the conformational changes, the protonation state, and the environment of the molecule during the redox processes. Spectroelectrochemical investigations (EPR, UV/vis-NIR) of the respective redox reactions suggest a ligand-centered radical anion [RuII (μ-LH2 •3- )RuII ]- upon reduction (EPR Δg = 0.042) and an ambiguous, EPR-silent one-electron oxidized state. In both cases, the absence of the otherwise typical broad intervalence charge transfer bands in the NIR region for mixed-valent complexes support the formulation as radical anionic bridged compound. However, on the basis of high-pressure electrochemical data and density functional theory calculations the one-electron oxidized form could be assigned as a charge-delocalized [RuII.5 (μ-LH2 2- )RuII.5 ]+ valence tautomer rather than [RuIII (μ-LH2 •3- )RuIII ]+ . Deprotonation of the bridging ligand causes a severe shift of the redox potential for the metal-based oxidation toward lower potentials, yielding the charge-localized [RuIII (μ-LH3- )RuII ]0 complex. This PCET process is accompanied by large intrinsic volume changes. All findings are supported by computational methods (geometry optimization, spin population analysis). For all redox processes, valence alternatives are discussed.- Published
- 2017
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31. Structure and reactivity of [Ru II (terpy)(N^N)Cl]Cl complexes: consequences for biological applications.
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Chrzanowska M, Katafias A, Impert O, Kozakiewicz A, Surdykowski A, Brzozowska P, Franke A, Zahl A, Puchta R, and van Eldik R
- Abstract
The crystal structures of [Ru
II (terpy)(bipy)Cl]Cl·2H2 O and [RuII (terpy)(en)Cl]Cl·3H2 O, where terpy = 2,2':6',2''-terpyridine, bipy = 2,2'-bipyridine and en = ethylenediamine, were determined and compared to the structure of the complexes in solution obtained by multi-nuclear NMR spectroscopy in DMSOd-6 as a solvent. In aqueous solution, both chlorido complexes aquate fully to the corresponding aqua complexes, viz. [RuII (terpy)(bipy)(H2 O)]2+ and [RuII (terpy)(en)(H2 O)]2+ , within ca. 2 h and ca. 2 min at 37 °C, respectively. The spontaneous aquation reactions can only be suppressed by chloride concentrations as high as 2 to 4 M, i.e. concentrations much higher than that found in human blood. The corresponding aqua complexes are characterized by pKa values of ca. 10 and 11, respectively, which suggest a more labile coordinated water molecule in the case of the [RuII (terpy)(en)(H2 O)]2+ complex. Substitution reactions of the aqua complexes with chloride, cyanide and thiourea show that the [RuII (terpy)(en)(H2 O)]2+ complex is 30-60 times more labile than the [RuII (terpy)(bipy)(H2 O)]2+ complex at 25 °C. Water exchange reactions for both complexes were studied by17 O-NMR and DFT calculations (B3LYP(CPCM)/def2tzvp//B3LYP/def2svp and ωB97XD(CPCM)/def2tzvp//B3LYP/def2svp). Thermal and pressure activation parameters for the water exchange and ligand substitution reactions support the operation of an associative interchange (Ia ) process. The difference in reactivity between these complexes can be accounted for in terms of π-back bonding effects of the terpy and bipy ligands and steric hindrance on the bipy complex. Consequences for eventual biological application of the chlorido complexes are discussed.- Published
- 2017
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32. Switching between Inner- and Outer-Sphere PCET Mechanisms of Small-Molecule Activation: Superoxide Dismutation and Oxygen/Superoxide Reduction Reactivity Deriving from the Same Manganese Complex.
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Kenkel I, Franke A, Dürr M, Zahl A, Dücker-Benfer C, Langer J, Filipović MR, Yu M, Puchta R, Fiedler SR, Shores MP, Goldsmith CR, and Ivanović-Burmazović I
- Abstract
Readily exchangeable water molecules are commonly found in the active sites of oxidoreductases, yet the overwhelming majority of studies on small-molecule mimics of these enzymes entirely ignores the contribution of water to the reactivity. Studies of how these enzymes can continue to function in spite of the presence of highly oxidizing species are likewise limited. The mononuclear Mn
II complex with the potentially hexadentate ligand N-(2-hydroxy-5-methylbenzyl)-N,N',N'-tris(2-pyridinylmethyl)-1,2-ethanediamine (LOH ) was previously found to act as both a H2 O2 -responsive MRI contrast agent and a mimic of superoxide dismutase (SOD). Here, we studied this complex in aqueous solutions at different pH values in order to determine its (i) acid-base equilibria, (ii) coordination equilibria, (iii) substitution lability and operative mechanisms for water exchange, (iv) redox behavior and ability to participate in proton-coupled electron transfer (PCET) reactions, (v) SOD activity and reductive activity toward both oxygen and superoxide, and (vi) mechanism for its transformation into the binuclear MnII complex with(H)O L-LOH and its hydroxylated derivatives. The conclusions drawn from potentiometric titrations, low-temperature mass spectrometry, temperature- and pressure-dependent17 O NMR spectroscopy, electrochemistry, stopped-flow kinetic analyses, and EPR measurements were supported by the structural characterization and quantum chemical analysis of proposed intermediate species. These comprehensive studies enabled us to determine how transiently bound water molecules impact the rate and mechanism of SOD catalysis. Metal-bound water molecules facilitate the PCET necessary for outer-sphere SOD activity. The absence of the water ligand, conversely, enables the inner-sphere reduction of both superoxide and dioxygen. The LOH complex maintains its SOD activity in the presence of• OH and MnIV -oxo species by channeling these oxidants toward the synthesis of a functionally equivalent binuclear MnII species.- Published
- 2017
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33. Adaptive Behavior of Dynamic Orthoester Cryptands.
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Shyshov O, Brachvogel RC, Bachmann T, Srikantharajah R, Segets D, Hampel F, Puchta R, and von Delius M
- Abstract
The integration of dynamic covalent bonds into macrocycles has been a tremendously successful strategy for investigating noncovalent interactions and identifying effective host-guest pairs. While numerous studies have focused on the dynamic responses of macrocycles and larger cages to various guests, the corresponding constitutionally dynamic chemistry of cryptands remains unexplored. Reported here is that cryptands based on orthoester bridgeheads offer an elegant entry to experiments in which a metal ion selects its preferred host from a dynamic mixture of competing subcomponents. In such dynamic mixtures, the alkali metal ions Li
+ , Na+ , K+ , Rb+ , and Cs+ exhibit pronounced preferences for the formation of cryptands of certain sizes and donor numbers, and the selection is rationalized by DFT calculations. Reported is also the first self-assembly of a chiral orthoester cryptate and a preliminary study on the use of stereoisomers as subcomponents., (© 2017 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.)- Published
- 2017
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34. A Soft Grip: Magnesium Complexes with a Phosphine-Modified Phosphonium Diylidic Lewis Base.
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Langer J, Kosygin I, Puchta R, Pahl J, and Harder S
- Abstract
Simple strategies to obtain magnesium complexes with the soft chelating diylidic ligand [Ph
2 PCHPPh2 (fluorenylidene)]- (dppmflu- ) were developed to evaluate the influence of the hard acid (cation) and soft base (anion) mismatch on the stability and reactivity of the formed derivatives. Deprotonation of the precursor Ph2 PCH2 PPh2 (flu) (dppmfluH) by an alkylmagnesium derivative or magnesium amide provided access to [{Mg(dppmflu)(μ-nBu)}2 ], [Mg(dppmflu){N(SiMe3 )2 }], and [{Mg(dppmflu)(μ-Me)}2 ], which were used as starting materials for further investigations. The reaction of [{Mg(dppmflu)(μ-nBu)}2 ] with PhSiH3 in the presence of THF allowed isolation of the magnesium hydride complex [{Mg(dppmflu)(μ-H)(thf)}2 ] without a stabilizing nitrogen donor ligand. Prolonged heating enforced ligand redistribution and [{Mg(dppmflu)(μ-H)(thf)}2 ] was converted to [Mg(dppmflu)2 ] and MgH2 . The homoleptic derivative [Mg(dppmflu)2 ], in which the magnesium center is in a very soft ligand environment, can open a THF molecule by frustrated Lewis pair reactivity to give [{Mg(dppmflu)(μ-OC4 H8 dppmflu)}2 ]., (© 2016 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.)- Published
- 2016
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35. DNA binding properties, histidine interaction and cytotoxicity studies of water soluble ruthenium(ii) terpyridine complexes.
- Author
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Lazić D, Arsenijević A, Puchta R, Bugarčić ŽD, and Rilak A
- Subjects
- Animals, Antineoplastic Agents chemical synthesis, Antineoplastic Agents chemistry, Antineoplastic Agents pharmacology, Cattle, Cell Line, Tumor, Cell Survival drug effects, Coordination Complexes chemical synthesis, Coordination Complexes pharmacology, DNA metabolism, Ethidium chemistry, Ethidium metabolism, Histidine metabolism, Humans, Kinetics, Magnetic Resonance Spectroscopy, Mice, Molecular Conformation, Quantum Theory, Spectrophotometry, Ultraviolet, Viscosity, Water chemistry, Coordination Complexes chemistry, DNA chemistry, Histidine chemistry, Ruthenium chemistry
- Abstract
In this study, two representatives of previously synthesized ruthenium(ii) terpyridine complexes, i.e., [Ru(Cl-tpy)(en)Cl][Cl] (1) and [Ru(Cl-tpy)(dach)Cl][Cl] (2), were chosen and a detailed study of the kinetic parameters of their reactivity toward l-histidine (l-His), using the UV-Vis and (1)H NMR techniques, was developed. The inner molecular rearrangement from N3-coordinated l-His to the N1 bound isomer, observable in the NMR data, was corroborated by DFT calculations favoring N1 coordination by nearly 4 kcal mol(-1). These two ruthenium(ii) terpyridine complexes were investigated for their interactions with DNA employing UV-Vis spectroscopy, DNA viscosity measurements and fluorescence quenching measurements. The high binding constants obtained in the DNA binding studies (Kb = 10(4)-10(5) M(-1)) suggest a strong binding of the complexes to calf thymus (CT) DNA. Competitive studies with ethidium bromide (EB) showed that the complexes can displace DNA-bound EB, suggesting strong competition with EB (Ksv = 1.5-2.5 × 10(4) M(-1)). In fact, the results indicate that these complexes can bind to DNA covalently and non-covalently. In order to gain insight of the behavior of a neutral compound, besides the four previously synthesized cationic complexes [Ru(Cl-tpy)(en)Cl][Cl] (1), [Ru(Cl-tpy)(dach)Cl][Cl] (2), [Ru(Cl-tpy)(bpy)Cl][Cl] (3) and [Ru(tpy)Cl3] (P2), a new complex, [Ru(Cl-tpy)(pic)Cl] (4), was used in the biological studies. Their cytotoxicity was investigated against three different tumor cell lines, i.e., A549 (human lung carcinoma cell line), HCT116 (human colon carcinoma cell line), and CT26 (mouse colon carcinoma cell line), by the MTT assay. Complexes 1 and 2 showed higher activity than complexes 3, 4 and P2 against all the selected cell lines. The results on in vitro anticancer activity confirmed that only compounds that hydrolyze the monodentate ligand at a reasonable rate show moderate activity, provided that the chelate ligand is a hydrogen bond donor.
- Published
- 2016
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36. Studies on the Reaction of Iron(II) with NO in a Noncoordinating Ionic Liquid.
- Author
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Begel S, Puchta R, Sutter J, Heinemann FW, Dahlenburg L, and Eldik Rv
- Abstract
In an earlier study we investigated the reaction of iron(II) chloride with NO in a strongly coordinating ionic liquid 1-ethyl-3-methylimidazolium dicyanamide [emim][dca] and showed that the actual reactive species in solution was [Fe(II)(dca)5Cl](4-). For the present report we investigated in detail how this reaction could proceed in a noncoordinating ionic liquid 1-ethyl-3-methylimidazolium trifluoromethylsulfonate [emim][OTf]. The donor ability of OTf(-) is much lower than that of dca(-), such that the solubility of FeCl2 in [emim][OTf] strongly depended on other donors like water or chloride ions present or added to the ionic liquid. On increasing the chloride concentration in [emim][OTf], the tetrachloridoferrate complex [emim]2[FeCl4] was formed, as verified by X-ray crystallography. This complex undergoes reversible binding of NO, for which the UV-vis spectral characteristics of the green-brown nitrosyl product resembled that found for the corresponding nitrosyl complexes formed in water and [emim][dca] as solvents. A detailed analysis of the spectra revealed that the {Fe-NO}(7) species has Fe(II)-NO(•) character in contrast to Fe(III)-NO(-) as found for the other solvents. The formation constant, however, is much higher than in [emim][dca], lying closer to the value found for water as solvent. Surprisingly, the Mössbauer spectrum found in [emim][OTf] is very unusual and unsimilar to that found in water and [emim][dca] as solvents, pointing at a different electron density distribution between Fe and NO in {Fe-NO}.7 First, the high isomer shift points to the presence of iron(II) species in solution, thus indicating that upon NO binding no oxidation to iron(III) occurs. Second, the negligible quadrupole splitting suggests a high local symmetry around the iron center. The nitrosyl product is suggested to be [Fe(II)Cl3NO](-), which is supported by electron paramagnetic resonance (EPR) and IR measurements. The nature of the Fe(II) complexes formed in [emim][OTf] depends on the additives required to dissolve FeCl2 in this ionic liquid.
- Published
- 2015
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37. Preparation of candidate reference materials for the determination of phosphorus containing flame retardants in styrene-based polymers.
- Author
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Roth T, Urpi Bertran R, Latza A, Andörfer-Lang K, Hügelschäffer C, Pöhlein M, Puchta R, Placht C, Maid H, Bauer W, and van Eldik R
- Abstract
Candidate reference materials (RM) for the analysis of phosphorus-based flame retardants in styrene-based polymers were prepared using a self-made mini-extruder. Due to legal requirements of the current restriction for the use of certain hazardous substances in electrical and electronic equipment, focus now is placed on phosphorus-based flame retardants instead of the brominated kind. Newly developed analytical methods for the first-mentioned substances also require RMs similar to industrial samples for validation and verification purposes. Hence, the prepared candidate RMs contained resorcinol-bis-(diphenyl phosphate), bisphenol A bis(diphenyl phosphate), triphenyl phosphate and triphenyl phosphine oxide as phosphorus-based flame retardants. Blends of polycarbonate and acrylonitrile-co-butadiene-co-styrene as well as blends of high-impact polystyrene and polyphenylene oxide were chosen as carrier polymers. Homogeneity and thermal stability of the candidate RMs were investigated. Results showed that the candidate RMs were comparable to the available industrial materials. Measurements by ICP/OES, FTIR and NMR confirmed the expected concentrations of the flame retardants and proved that analyte loss and degradation, respectively, was below the uncertainty of measurement during the extrusion process. Thus, the candidate RMs were found to be suitable for laboratory use.
- Published
- 2015
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38. Behavior of highly diluted electrolytes in strong electric fields-prevention of alumina deposition on grading electrodes in HVDC transmission modules by CO2-induced pH-control.
- Author
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Weber I, Mallick B, Schild M, Kareth S, Puchta R, and van Eldik R
- Abstract
Alumina deposition on platinum grading electrodes in high voltage direct current (HVDC) transmission modules is an unsolved problem that has been around for more than three decades. This is due to the unavoidable corrosion of aluminum heat sinks that causes severe damage to electrical power plants and losses in the range of a million Euro range per day in power outage. Simple experiments in a representative HV test setup showed that aluminates at concentrations even below 10(-8) mol L(-1) can deposit on anodes through neutralization by protons produced in de-ionized water (κ≤0.15 μS cm(-1)) at 20-35 kV (8 mA) per electrode. In this otherwise electrolyte-poor aqueous environment, the depositions are formed three orders of magnitude below the critical precipitation concentration at pH 7! In the presence of an inert electrolyte such as TMAT (tetramethylammonium-p-toluenesulfonate), at a concentration level just above that of the total dissolved aluminum, no deposition was observed. Deposition can be also prevented by doping with CO2 gas at a concentration level that is magnitudes lower than that of the dissolved aluminum. From an overview of aqueous aluminum chemistry, the mystery of the alumina deposition process and its inhibition by CO2 is experimentally resolved and fully explained by field accumulation and repulsion models in synergism with acid-base equilibria. The extraordinary size of the alumina depositions is accounted for in terms of proton tunneling through "hydrated" alumina, which is supported by quantum chemical calculations. As a consequence, pulse-purging with pure CO2 gas is presented as a technical solution to prevent the deposition of alumina., (© 2014 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.)
- Published
- 2014
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39. Studies on the reactions of [AuCl4](-) with different nucleophiles in aqueous solution.
- Author
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Durović MD, Puchta R, Bugarčić ZD, and van Eldik R
- Abstract
In order to distinguish between the different types of reactions that can occur between Au(III) species and simple nucleophiles, including iodide, bromide, nitrite, thiourea, pyridine and dimethyl sulfoxide, spectrophotometric techniques including stopped-flow and rapid-scan measurements were employed under specific reaction conditions. All experiments were performed in a 0.4 M NaCl aqueous solution to maintain a high chloride concentration and a constant ionic strength. The temperature dependence of the observed rate constants confirmed the associative nature of the ligand substitution reactions. The redox behaviour of the Au(III) species was studied by cyclic voltammetry and confirmed the reversible redox transitions at ca. 0.38 V (SCE, E = 0.1 V s(-1)). Results obtained during the reaction progress were attributed to the formation of Au(0). This oxidation state was observed for the reactions with thiourea, iodide and nitrite, whereas pyridine showed a potential shift only to Au(i) formation, while bromide showed potential shifts typical of ligand substitution reactions. The reaction with dimethyl sulfoxide was studied using (1)H NMR and ab initio (RMP2(full)/LANL2DZp) techniques, which revealed why Au(III) does not react with sulfoxide. The results are discussed in terms of the importance of the stability of the Au(III) species in aqueous solutions of the selected salts and bases. In this way, one could differentiate between a possible three-electron inner-sphere redox process and/or a substitution process during the rapid initial step of the reactions.
- Published
- 2014
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40. Host-guest complexes of calix[4]tubes--prediction of ion selectivity by quantum chemical calculations VI.
- Author
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Begel S, Puchta R, and van Eldik R
- Subjects
- Calixarenes chemistry, Ions chemistry, Models, Chemical, Quantum Theory
- Abstract
The selectivity of the bis(calix[4]arene)tetraethylene abbreviated as calix[4]tube for the endohedral complexation of alkali and alkaline earth metal ions, was predicted on the basis of structures and complex formation energies computed with three different quantum chemical methods: DFT LANL2DZp)/LANL2DZp), PM3/SPASS, and PM6. A comparison with published X-ray structures demonstrated that the most reliable results were achieved applying DFT calculations. The complexation of K⁺ and Ba²⁺ is most favorable, followed by the encapsulation of Rb⁺ and Sr²⁺, respectively. The flexibility of the tube, described by the torsion angles associated with the ethylene linkages between the calix[4]arene units and phenyl rings intersecting the plane of the four methylene carbon atoms, also makes an important contribution to its selectivity. In general, the cavity size is similar to [2.2.2] and [N2N2N2], the cryptands with the largest cavities previously studied in our group applying a similar protocol.
- Published
- 2014
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41. Quantum chemical investigations of the water exchange mechanism on [Al(III)(H₂O)₅(L)]²⁺ as a function of the donor strength of the anionic L.
- Author
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Alzoubi BM, Weber I, Hanauer H, Puchta R, and van Eldik R
- Subjects
- Anions chemistry, Models, Molecular, Molecular Structure, Thermodynamics, Aluminum chemistry, Coordination Complexes chemistry, Models, Chemical, Quantum Theory, Water chemistry
- Abstract
Water exchange reactions of the complexes Al(H₂O)₅(L)]²⁺·H₂O for L = →OCN⁻, F⁻, CF₃⁻, →NC⁻, →CN⁻, Cl⁻, Br⁻, H⁻, SH⁻, OH⁻, →NCO⁻, →NCS⁻, →SCN⁻, CF₃CH₂⁻, CH₃⁻, Et⁻, i-Pr⁻ and t-but⁻, were studied by DFT calculations (B3LYP/6-311+G**). The reactions follow a dissociative (D) pathway for Al(H₂O)₅(L)]²⁺·H₂O to form the five-coordinate intermediate [Al(H₂O)₄L]²⁺·2H₂O for the weaker donor ligands of the series. On increasing the donor strength of L, the five-coordinate intermediate becomes significantly more stable than the reactant state. At this point there is a mechanistic changeover to an associative (A) pathway for [Al(H₂O)₄L]²⁺·2H₂O as reactant to form a six-coordinate intermediate Al(H₂O)₅(L)]²⁺·H₂O. For some of the anionic ligands L = → NC⁻, →CN⁻, Cl⁻, OH⁻ and →SCN⁻) the energy gap between the reactant and intermediate states is small, such that the water exchange mechanism lies in the boarder of dissociative and associative pathways. The water exchange process involves cis- and trans-orientated transition states to form the product state that is similar to the reactant state.
- Published
- 2014
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42. Reply to the Comment on the article "Gutmann donor and acceptor numbers for ionic liquids" (Chem. Eur. J. 2012, 18, 10969-10982) by J.-F. Gal and C. Laurence.
- Author
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Schmeisser M, Illner P, Puchta R, Zahl A, and van Eldik R
- Published
- 2013
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43. Coordination of terpyridine to Li+ in two different ionic liquids.
- Author
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Pokorny K, Schmeisser M, Hampel F, Zahl A, Puchta R, and van Eldik R
- Abstract
On the basis of (7)Li NMR experiments, the complex-formation reaction between Li(+) and the tridentate N-donor ligand terpyridine was studied in the ionic liquids [emim][NTf2] and [emim][ClO4] as solvents. For both ionic liquids, the NMR data implicate the formation of [Li(terpy)2](+). Density functional theory calculations show that partial coordination of terpyridine involving the coordination of a solvent anion can be excluded. In contrast to the studies in solution, X-ray diffraction measurements led to completely different results. In the case of [emim][NTf2], the polymeric lithium species [Li(terpy)(NTf2)]n was found to control the stacking of this complex, whereas crystals grown from [emim][ClO4] exhibit the discrete dimeric species [Li(terpy)(ClO4)]2. However, both structures indicate that each lithium ion is formally coordinated by one terpy molecule and one solvent anion in the solid state, suggesting that charge neutralization and π stacking mainly control the crystallization process.
- Published
- 2013
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44. Host-guest complexes of mixed glycol-bipyridine cryptands: prediction of ion selectivity by quantum chemical calculations, part V.
- Author
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Begel S, Puchta R, and van Eldik R
- Abstract
The selectivity of the cryptands [2.2.bpy] and [2.bpy.bpy] for the endohedral complexation of alkali, alkaline-earth and earth metal ions was predicted on the basis of the DFT (B3LYP/LANL2DZp) calculated structures and complex-formation energies. The cavity size in both cryptands lay between that for [2.2.2] and [bpy.bpy.bpy], such that the complexation of K(+), Sr(2+) and Tl(3+) is most favorable. While the [2.2.bpy] is moderately larger, preferring Rb(+) complexation and demonstrating equal priority for Sr(2+) and Ba(2+), the slightly smaller [2.bpy.bpy] yields more stable cryptates with Na(+) and Ca(2+). Although the CH2-units containing molecular bars fixed at the bridgehead nitrogen atoms determine the flexibility of the cryptands, the twist angles associated with the bipyridine and glycol building blocks also contribute considerably.
- Published
- 2013
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45. Quantum chemical studies on the enantiomerization mechanism of several [Zn(py)3(tach)]2+ derivatives.
- Author
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Puchta R, Alzoubi BM, Meier R, Almuhtaseb SI, Walther M, and van Eldik R
- Abstract
The enantiomerization mechanism of the trigonal-prismatic [Zn(py)(3)(tach)](2+) complex and several derivatives has been studied by applying DFT calculations (B3LYP/LANL2DZp). The enantiomerization pathways of [Zn(py(3)tach-X)](2+) (X = C, Si, Ge, N, P, As, O, S and Se) start from a distorted trigonal-prismatic C(3) symmetric ground state via an ideal trigonal-prismatic C(3v) structure to end up in a C(3)' symmetric image of the ground state. The activation energy and structural data of the complexes depend on electronic and steric factors. The activation barriers of the complexes decrease in the order [Zn(py(3)tach-Ge)](2+) > [Zn(py(3)tach-Si)](2+) > [Zn(py(3)tach-As)](2+) > [Zn(py(3)tach-Se)](2+) > [Zn(py(3)tach-P)](2+) > [Zn(py(3)tach-S)](2+) > [Zn(py(3)tach-C)](2+) > [Zn(py(3)tach-N)](2+) > [Zn(py(3)tach-O)](2+).
- Published
- 2012
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46. Gutmann donor and acceptor numbers for ionic liquids.
- Author
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Schmeisser M, Illner P, Puchta R, Zahl A, and van Eldik R
- Abstract
We present for the first time Gutmann donor and acceptor numbers for a series of 36 different ionic liquids that include 26 distinct anions. The donor numbers were obtained by (23)Na NMR spectroscopy and show a strong dependence on the anionic component of the ionic liquid. The donor numbers measured vary from -12.3 kcal mol(-1) for the ionic liquid containing the weakest coordinative anion [emim][FAP] (1-ethyl-3-methylimidazolium tris(pentafluoroethyl)trifluorophosphate), which is a weaker donor than 1,2-dichloroethane, to 76.7 kcal mol(-1) found for the ionic liquid [emim][Br], which exhibits a coordinative strength in the range of tertiary amines. The acceptor numbers were measured by using (31)P NMR spectroscopy and also vary as a function of the anionic and cationic component of the ionic liquid. The data are presented and correlated with other solvent parameters like the Kamlet-Taft set of parameters, and compared to the donor numbers reported by other groups., (Copyright © 2012 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.)
- Published
- 2012
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47. Kinetic and mechanistic studies of base-catalyzed phenylselenoetherification of (Z)- and (E)-hex-4-en-1-ols.
- Author
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Divac VM, Puchta R, and Bugarčić ZM
- Abstract
The mechanism of phenylselenoetherification of (Z)- and (E)-hex-4-en-1-ols using some bases (triethylamine, pyridine, quinoline, 2,2'-bipyridine) as catalysts and some solvents [tetrahydrofuran (THF) and CCl4] as reaction media was examined through studies of kinetics of the cyclization by UV-vis spectrophotometry. It was demonstrated that the intramolecular cyclization is facilitated in the presence of bases as a result of the hydrogen bond between the base and the alkenol's OH group. The rate constants in the base-catalyzed reactions are remarkably influenced by the bulkiness and basicity of the base used and the nature of the considered nitrogen donors. The obtained values for rate constants show that the reaction with triethylamine is the fastest one. THF with higher polarity and higher basic character is better as a solvent than CCl4. Quantum-chemical calculations [MP2(fc)/6-311+G**//B3LYP/6-311+G** + ZPE(B3LYP/6-311+G**] show that the cyclization of (Z)-hex-4-en-1-ol to a tetrahydrofuranoid five-membered ring is kinetically controlled, while the cyclization of (E)-hex-4-en-1-ol to the tetrahydropyranoid six-membered ring is thermodynamically controlled. This is in accordance with previous experimental findings.
- Published
- 2012
- Full Text
- View/download PDF
48. Apparent or real water exchange reactions on [Zn(H2O)4(L)](2+)·2H2O (L = sp-nitrogen donor ligands)? A quantum chemical investigation.
- Author
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Alzoubi BM, Walther M, Puchta R, and van Eldik R
- Subjects
- Ligands, Thermodynamics, Nitrogen chemistry, Quantum Theory, Water chemistry, Zinc chemistry
- Abstract
The exchange of a second coordination sphere water molecule in [Zn(H(2)O)(4)(L)](2+)·2H(2)O (L = HN(3), HCN, FCN, ClCN, BrCN, CH(3)CN, (C(4)H(3))CN, PhCN, (CH(3))(3)CCN, CF(3)CN, CCl(3)CN, CHCl(2)CN, and CH(2)ClCN) against a coordinated water molecule was studied by quantum chemical calculations (RB3LYP/6-311+G**). The complete reaction consists of an associative binding of one H(2)O from the second coordination sphere leading to a six-coordinate intermediate [Zn(H(2)O)(5)(L)](2+)·H(2)O, followed by the dissociation of a water molecule to reach the product state [Zn(H(2)O)(4)(L)](2+)·2H(2)O. For a real water exchange reaction to occur two different transition states have to be included, otherwise only an apparent water exchange reaction takes place. For the water exchange reaction in [Zn(H(2)O)(4)(L)](2+)·2H(2)O, nearly iso-energetic cis- and trans-orientated transition states are crossed. The gas-phase proton affinity of L shows instructive correlations with structural parameters and energy gaps for the investigated reactions.
- Published
- 2012
- Full Text
- View/download PDF
49. Kinetics and mechanism of the reactions of Au(III) complexes with some biologically relevant molecules.
- Author
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Djeković A, Petrović B, Bugarčić ZD, Puchta R, and van Eldik R
- Subjects
- Antineoplastic Agents chemical synthesis, Kinetics, Ligands, Models, Molecular, Molecular Conformation, Organometallic Compounds chemical synthesis, Quantum Theory, Antineoplastic Agents chemistry, Gold chemistry, Organometallic Compounds chemistry
- Abstract
The kinetics of the substitution reactions between the mono-functional Au(III) complexes, [Au(dien)Cl](2+) and [Au(terpy)Cl](2+) (dien = 3-azapentane-1,5-diamine, terpy = 2,2';6',2''-terpyridine) and bi-functional Au(III) complexes, [Au(bipy)Cl(2)](+) and [Au(dach)Cl(2)](+) (bipy = 2.2'-bipyridine, dach = (1R,2R)-1,2-diaminocyclohexane) and biologically relevant ligands such as l-histidine (l-His), inosine (Ino), inosine-5'-monophosphate (5'-IMP) and guanosine-5'-monophosphate (5'-GMP), were studied in detail. All kinetic studies were performed in 25 mM Hepes buffer (pH = 7.2) in the presence of NaCl to prevent the spontaneous hydrolysis of the chloride complexes. The reactions were followed under pseudo-first order conditions as a function of ligand concentration and temperature using stopped-flow UV-vis spectrophotometry. The results showed that the mono-functional complexes react faster than the bi-functional complexes in all studied reactions. The [Au(terpy)Cl](2+) complex is more reactive than the [Au(dien)Cl](2+) complex, which was confirmed by quantum chemical (DFT) calculations. A more than 50% lower activation energy for the terpy than for the dien based complex was found. The bi-functional [Au(bipy)Cl(2)](+) complex is more reactive than the [Au(dach)Cl(2)](+) complex. The reactivity of the studied nucleophiles follows the same order for all studied systems, viz. l-His > 5'-GMP > 5'-IMP > Ino. According to the measured activation parameters, all studied reactions follow an associative substitution mechanism. Quantum chemical calculations (B3LYP/LANL2DZp) suggest that ligand substitution in [Au(terpy)Cl](2+) and [Au(dien)Cl](2+) by imidazole follows an interchange mechanism with a significant degree of associative character. The results demonstrate the strong connection between the reactivity of the complexes toward biologically relevant ligands and their structural and electronic characteristics. Therefore, the binding of gold(III) complexes to 5'-GMP, constituent of DNA, is of particular interest since this interaction is thought to be responsible for their anti-tumour activity.
- Published
- 2012
- Full Text
- View/download PDF
50. Role of π-acceptor effects in controlling the lability of novel monofunctional Pt(II) and Pd(II) complexes: crystal structure of [Pt(tripyridinedimethane)Cl]Cl.
- Author
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Petrović B, Bugarčić Ž, Dees A, Ivanović-Burmazović I, Heinemann FW, Puchta R, Steinmann SN, Corminboeuf C, and van Eldik R
- Subjects
- Crystallography, X-Ray, Entropy, Kinetics, Models, Molecular, Molecular Structure, Quantum Theory, Spectrophotometry, Ultraviolet, Spectroscopy, Fourier Transform Infrared, Palladium chemistry, Platinum chemistry
- Abstract
The kinetics and mechanism of substitution reactions of novel monofunctional [Pt(tpdm)Cl](+) and [Pd(tpdm)Cl](+) complexes (where tpdm = tripyridinedimethane) and their aqua analogues with thiourea (tu), L-methionine (L-met), glutathione (GSH), and guanosine-5'-monophosphate (5'-GMP) were studied in 0.1 M NaClO(4) at pH = 2.5 (in the presence of 10 mM NaCl for reactions of the chlorido complexes). The reactivity of the investigated nucleophiles follows the order tu > l-met > GSH > 5'-GMP. The reported rate constants showed the higher reactivity of the Pd(II) complexes as well as the higher reactivity of the aqua complex than the corresponding chlorido complex. The negative values reported for the activation entropy as well as the activation volume confirmed an associative substitution mode. In addition, the molecular and crystal structure of [Pt(tpdm)Cl]Cl was determined by X-ray crystallography. The compound crystallizes in a monoclinic space group C2/c with two independent molecules of the complex and unit cell dimensions of a = 38.303(2) Å, b = 9.2555(5) Å, c = 27.586(2) Å, β = 133.573(1)°, and V = 7058.3(8) Å(3). The cationic complex [Pt(tpdm)Cl](+) exhibits square-planar coordination around the Pt(II) center. The lability of the [Pt(tpdm)Cl](+) complex is orders of magnitude lower than that of [Pt(terpyridine)Cl](+). Quantum chemical calculations were performed on the [Pt(tpdm)Cl](+) and [Pt(terpyridine)Cl](+) complexes and their reactions with thiourea. Theoretical computations for the corresponding Ni(II) complexes clearly demonstrated that π-back-bonding properties of the terpyridine chelate can account for acceleration of the nucleophilic substitution process as compared to the tpdm chelate, where introduction of two methylene groups prevents such an effective π-back bonding.
- Published
- 2012
- Full Text
- View/download PDF
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