1. Inhibitory mechanism of reveromycin A at the tRNA binding site of a class I synthetase.
- Author
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Chen B, Luo S, Zhang S, Ju Y, Gu Q, Xu J, Yang XL, and Zhou H
- Subjects
- Amino Acyl-tRNA Synthetases chemistry, Amino Acyl-tRNA Synthetases drug effects, Isoleucine, Isoleucine-tRNA Ligase chemistry, Isoleucine-tRNA Ligase drug effects, Ligands, Models, Molecular, Osteoporosis drug therapy, RNA, Transfer chemistry, Saccharomyces cerevisiae, Binding Sites drug effects, Ligases chemistry, Ligases drug effects, Pyrans antagonists & inhibitors, RNA, Transfer drug effects, Spiro Compounds antagonists & inhibitors
- Abstract
The polyketide natural product reveromycin A (RM-A) exhibits antifungal, anticancer, anti-bone metastasis, anti-periodontitis and anti-osteoporosis activities by selectively inhibiting eukaryotic cytoplasmic isoleucyl-tRNA synthetase (IleRS). Herein, a co-crystal structure suggests that the RM-A molecule occupies the substrate tRNA
Ile binding site of Saccharomyces cerevisiae IleRS (ScIleRS), by partially mimicking the binding of tRNAIle . RM-A binding is facilitated by the copurified intermediate product isoleucyl-adenylate (Ile-AMP). The binding assays confirm that RM-A competes with tRNAIle while binding synergistically with L-isoleucine or intermediate analogue Ile-AMS to the aminoacylation pocket of ScIleRS. This study highlights that the vast tRNA binding site of the Rossmann-fold catalytic domain of class I aminoacyl-tRNA synthetases could be targeted by a small molecule. This finding will inform future rational drug design.- Published
- 2021
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