5,093 results on '"Qin, Xu"'
Search Results
2. Low-temperature atomic-level trimming on Ge interfused surface for gate-all-around Si nanosheets transistors
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Sang, Guan-Qiao, Jiang, Ren-Jie, Wei, Yan-Zhao, Li, Qing-Kun, Zhang, Mei-He, Yao, Jia-Xin, Lu, Yi-Hong, Cao, Lei, Li, Jun-Feng, Qin, Xu-Lei, Zhang, Qing-Zhu, and Yin, Hua-Xiang
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- 2024
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3. Mediation Analysis using Semi-parametric Shape-Restricted Regression with Applications
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Yin, Qing, Jeong, Jong-Hyeon, Qin, Xu, Peddada, Shyamal D, and Adibi, Jennifer J
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- 2024
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4. Mediation Analysis using Semi-parametric Shape-Restricted Regression with Applications
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Yin, Qing, Jeong, Jong-Hyeon, Qin, Xu, Peddada, Shyamal D, and Adibi, Jennifer
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Statistics - Methodology ,Statistics - Applications - Abstract
Often linear regression is used to perform mediation analysis. However, in many instances, the underlying relationships may not be linear, as in the case of placental-fetal hormones and fetal development. Although, the exact functional form of the relationship may be unknown, one may hypothesize the general shape of the relationship. For these reasons, we develop a novel shape-restricted inference-based methodology for conducting mediation analysis. This work is motivated by an application in fetal endocrinology where researchers are interested in understanding the effects of pesticide application on birth weight, with human chorionic gonadotropin (hCG) as the mediator. We assume a practically plausible set of nonlinear effects of hCG on the birth weight and a linear relationship between pesticide exposure and hCG, with both exposure-outcome and exposure-mediator models being linear in the confounding factors. Using the proposed methodology on a population-level prenatal screening program data, with hCG as the mediator, we discovered that, while the natural direct effects suggest a positive association between pesticide application and birth weight, the natural indirect effects were negative.
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- 2023
5. Sarcopenia is associated with leukopenia in urothelial carcinoma patients who receive tislelizumab combined with gemcitabine and cisplatin therapy
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Gao, Zhimin, Pang, Yubin, Qin, Xu, Li, Gang, Wang, Zewei, Zhang, Lei, Wang, Junqi, Qi, Nienie, and Li, Hailong
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- 2024
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6. Numerical simulation on gas–liquid multiphase flow behavior under coupling effects of annular gas curtain and swirling flow at tundish upper nozzle
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Qin, Xu-feng, Cheng, Chang-gui, Li, Yang, Wu, Wei-li, Chen, Hao, Zhao, Chao-fa, and Jin, Yan
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- 2024
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7. Construction of an uricase/catalase/curcumin-co-loaded drug delivery system and its effect on hyper-uric acid-induced kidney injury
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Yang Zhang, Xiaobo Li, Chunling Liang, Jianjia Feng, Chuyi Yu, Weichi Jiang, Keneng Cai, Wanying Chen, Wenli Cai, Feng Zeng, Qin Xu, Peng Chen, and Jianming Liang
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Hyper-uric acid-induced kidney injury ,Uricase ,Catalase ,Curcumin ,Metal organic framework ,Technology - Abstract
Hyper-uric acid (UA)-induced kidney injury (HAKI) is caused by the deposition of excess blood UA into the kidneys. We confined molecules of uricase (URI), catalase (CAT), and curcumin (Cur) to a single structure (UC/Cur) while retaining their enzymatic activities via a cross-linking complexation reaction between tannic acid and FeCl3 for treating HAKI. Simultaneously, bovine serum albumin (BSA)-UC/Cur nanoparticles were successfully prepared by interlinking the disulfide bonds of BSA with the enzyme complex via Tris(2-carboxyethyl) phosphine(TCEP) to form sulfhydryl groups. BSA-UC/Cur significantly attenuated MSU-induced NLRP3 inflammasome pathway activation and apoptosis in NRK-52e cells by eliminating UA crystals and intracellular reactive oxygen species. More importantly, treatment with BSA-UC/Cur stabilized blood UA concentrations and lowered proximal tubular protein levels, mitochondrial swelling, and fibrotic areas, renducing the expression of matrix metalloproteinase (MMP)2, MMP9, and NLRP3 while, increasing the expression of tight-junction proteins ZO1 and occludin as well as that of TIMP-1, in HAKI model rats. In addition, BSA-UC/Cur nanoparticles reduced the subpopulation ratios of CD8+ T cells and M1 macrophages and increased those of M2 macrophages and Treg cells. Preliminary in-vivo trials showed that long-term intravenous treatment with BSA-UC/Cur is safe. Therefore, BSA-UC/Cur could be a potential nanotherapeutic agent for HAKI.
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- 2024
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8. Association of postoperative delirium with hypotension in critically ill patients after cardiac surgery: a prospective observational study
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Saleh Mohammed Alhaj Othman, Mohammed Ali Ali Aziz, Gaber Musaed Ali Al-Mushiki, Chanyanud Sriwayyapram, Tecleab okubai, Gamil Al-Muwaffaq, Qin Xu, and Mohammed Alqudaimi
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Delirium ,Postoperative hypotension ,Surgery-related complications ,Adult population ,Open heart surgery ,Postoperative care ,Surgery ,RD1-811 ,Anesthesiology ,RD78.3-87.3 - Abstract
Abstract Background Postoperative delirium (POD), an acute and variable disturbance in cognitive function, is an intricate and elusive phenomenon that occurs after cardiac surgery. Despite progress in surgical techniques and perioperative management, POD remains a formidable challenge, imposing a significant burden on patients, caregivers, and healthcare systems. Methods This prospective observational study involved 307 patients who underwent cardiac surgery. Data on the occurrence of delirium, clinical parameters, and postoperative characteristics were collected. A multivariate analysis was performed to assess the relationship between POH and POD. Results Sixty-one patients (21%) developed delirium, with an average onset of approximately 5 days postoperatively and a duration of approximately 6 days. On multivariate analysis, POH was significantly associated with POD, and the adjusted odds ratios indicated that patients with POH were more likely to develop delirium (OR, 5.61; p = 0.006). Advanced age (OR, 1.11; p = 0.002), emergency surgery (OR, 8.31; p = 0.001), and on-pump coronary artery bypass grafting were identified as risk factors of POD. Patients who developed delirium were typically older, more likely to be male, and had higher morbidity rates than those who did not. Conclusion POH is significantly associated with delirium in critically ill patients after cardiac surgery. Surgical complexity and advanced age contribute to the risk of developing POD and poor postoperative outcomes.
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- 2024
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9. Early detection of uterine corpus endometrial carcinoma utilizing plasma cfDNA fragmentomics
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Jing Liu, Dan Hu, Yibin Lin, Xiaoxi Chen, Ruowei Yang, Li Li, Yanyan Zhan, Hua Bao, LeLe Zang, Mingxuan Zhu, Fei Zhu, Junrong Yan, Dongqin Zhu, Huiqi Zhang, Benhua Xu, and Qin Xu
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Early detection ,Endometrial carcinoma ,cfDNA ,Fragmentomics ,Medicine - Abstract
Abstract Background Uterine corpus endometrial carcinoma (UCEC) is a prevalent gynecologic malignancy with a favorable prognosis if detected early. However, there is a lack of accurate and reliable early detection tests for UCEC. This study aims to develop a precise and non-invasive diagnostic method for UCEC using circulating cell-free DNA (cfDNA) fragmentomics. Methods Peripheral blood samples were collected from all participants, and cfDNA was extracted for analysis. Low-coverage whole-genome sequencing was performed to obtain cfDNA fragmentomics data. A robust machine learning model was developed using these features to differentiate between UCEC and healthy conditions. Results The cfDNA fragmentomics-based model showed high predictive power for UCEC detection in training (n = 133; AUC 0.991) and validation cohorts (n = 89; AUC 0.994). The model manifested a specificity of 95.5% and a sensitivity of 98.5% in the training cohort, and a specificity of 95.5% and a sensitivity of 97.8% in the validation cohort. Physiological variables and preanalytical procedures had no significant impact on the classifier’s outcomes. In terms of clinical benefit, our model would identify 99% of Chinese UCEC patients at stage I, compared to 21% under standard care, potentially raising the 5-year survival rate from 84 to 95%. Conclusion This study presents a novel approach for the early detection of UCEC using cfDNA fragmentomics and machine learning showing promising sensitivity and specificity. Using this model in clinical practice could significantly improve UCEC management and control, enabling early intervention and better patient outcomes. Further optimization and validation of this approach are warranted to establish its clinical utility.
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- 2024
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10. The chemokine CCL14 is a potential biomarker associated with immune cell infiltration in lung adenocarcinoma
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Bai-er Sun, Zai-xin Yuan, Meng-jiao Wang, Li-qin Xu, Jian Feng, and Jing-jing Chen
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Lung adenocarcinoma ,C–C motif chemokine ligand 14 ,Tumor-infiltrating immune cells ,Bioinformatics ,Cell experiment ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Abstract Background Chemokine ligand 14, which has a C–C motif (CCL14), mediates the immunological milieu around tumors. However, its role in the progression of lung adenocarcinoma (LUAD) is still unknown. Our objectives were to study the association between CCL14 and tumor-infiltrating immune cells (TIICs) as well as the predictive significance of CCL14 in LUAD. Methods The expression of CCL14 in LUAD was examined by using the Oncomine, The Cancer Genome Atlas (TCGA), The University of Alabama at Birmingham CANcer data analysis Portal (UALCAN), and Human Protein Atlas databases. To determine the prognostic significance of CCL14 in LUAD, researchers used the Kaplan‒Meier plotter and Gene Expression Profiling Interactive Analysis (GEPIA, version 2). We utilized TIMER and GEPIA2 to investigate the connection between CCL14 and TIICs. Gene set enrichment analysis (GSEA) was used to test for functional enrichment of genes. We used RT‒qPCR to measure CCL14 expression and Cell Counting Kit-8, Transwell, and wound healing assays to investigate the biological role of CCL14. Results The prognosis of patients with LUAD was worse when CCL14 expression was low. Statistical analysis revealed that CCL14 mRNA expression was significantly greater in lung epithelial cells than in LUAD cell lines in vitro. Enhancing CCL14 expression reduced cell migration, invasion, and proliferation. The results of the immune infiltration research showed that CCL14 and TIICs were positively correlated. Different immune infiltration patterns associated with CCL14 were also shown by TIIC markers. According to GSEA, histone deacetylases, G2/M checkpoints, and Notch signaling pathways were associated with low CCL14 expression. Conclusions CCL14 is anticipated to emerge as a prognostic marker and therapeutic target for LUAD due to its role in regulating TIICs, suggesting that it may be an antioncogene.
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- 2024
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11. Air Release Point Optimization of Parafoil Airdrop Mission with Multiple Drop Zone Targets.
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Mengying Zhang, Yan'gang Liang, Qin Xu, and Yutong Wu
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- 2024
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12. A “set” of ancient bronze bells excavated in Changsha, Hunan Province, China
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Li, Kin Sum, Liu, Yu, Ma, Guancong, Liu, Kwong Ip, Ng, Michael Kwok-Po, Liu, Haiwang, Wilson, Keith, Chen, Xueqing, Lee, Kin San, Fang, Qin, Poon, Johnny M., Qin, Xu, Chun, Tsz Hin, and Jiang, Haoran
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- 2024
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13. High-permittivity ceramics enabled highly homogeneous zero-index metamaterials for high-directivity antennas and beyond
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Liu, Yueyang, Dong, Tian, Qin, Xu, Luo, Weijia, Leng, Ning, He, Yujing, Yuan, Yong, Bai, Ming, Sun, Jingbo, Zhou, Ji, Li, Yue, and Li, Yang
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- 2024
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14. Tissue-engineered bone construct promotes early osseointegration of implants with low primary stability in oversized osteotomy
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Xu, Lianyi, Jacobs, Reinhilde, Cao, Yingguang, Sun, Xiaojuan, and Qin, Xu
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- 2024
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15. Causal moderated mediation analysis: Methods and software
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Qin, Xu and Wang, Lijuan
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- 2024
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16. Sample size and power calculations for causal mediation analysis: A Tutorial and Shiny App
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Qin, Xu
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- 2024
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17. Clinical Trial on the Effect of Ripened Pu-erh Tea on Improving Abnormal Glucose and Lipid Metabolism
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SUN Ying, LI Yan, WANG Liming, HOU Can, HAO Binxiu, LI Song, SUN Tingting, QI Jingjie, ZHONG Lidi, DU Qin, XU Weijian, CHEN Zaiqiang, TIAN Bo, LI Haiying, YING Jian, CHEN Yuhua, WEI Zhenzhen
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ripened pu-erh tea ,glucose and lipid metabolism ,gut microbiota ,bile acids ,Food processing and manufacture ,TP368-456 - Abstract
This study explored the effect of commercial ripened Pu-erh tea (Y562, China Tea (Yunnan) Industry Co. Ltd.) on improving the health of populations with abnormal glucose and lipid metabolism. Qualified volunteers were recruited for nutritional epidemiological and clinical intervention studies. The volunteers were asked to drink the tea for three months. Their body composition (body mass, body mass index (BMI), body fat ratio and visceral fat), body circumferences (waist circumference, hip circumference and neck circumference), glucose metabolism-related indicators (fasting blood glucose, insulin, C-peptide, glycosylated hemoglobin), lipid metabolism-related indicators (total cholesterol, triglycerides, high-density lipoprotein cholesterol, low-density lipoprotein cholesterol, apolipoprotein A1 and B), blood uric acid levels, liver fat contents, and gut microbiota were tested and compared before and after drinking the tea to explore its health benefits. The results showed that after drinking Y562 without any change in diet or exercise for three months, the body mass, BMI, body circumferences, blood lipids (high-density lipoprotein cholesterol, apolipoprotein A1 and B), and liver fat contents of the volunteers were significantly improved (P 0.05). Moreover, the gut microbiota was improved, showing increased uniformity. The relative abundance of Lactobacillus, Clostridium, Akkermansia muciniphila, Clostridium screenens and Streptococcus thermophilus was increased, while that of Streptococcus, Lactococcus, Bacteroides, Bifidobacterium and Paraacteroides distasonis was decreased. This study suggests that ripened Pu-erh tea Y562 has the potential to help reduce the body mass, improve the body shape, reduce blood glucose and lipids, and alleviate non-alcoholic fatty liver disease (NAFLD). The underlying mechanism may be related to the regulation of the intestinal microecology and the bile acid pathways by Pu-erh tea.
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- 2024
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18. Long‐term survival outcomes and immune checkpoint inhibitor retreatment in patients with advanced cervical cancer treated with camrelizumab plus apatinib in the phase II CLAP study
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Chunyan Lan, Huaiwu Lu, Lin Zhou, Kunlun Liao, Junxiu Liu, Zhiwen Xie, Haixi Liang, Guorong Zou, Ting Yang, Qin Xu, and Xin Huang
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Cemrelizumab ,apatinib ,programmed cell death‐1 (PD‐1) ,programmed death‐ligand 1 (PD‐L1) ,tumor mutational burden (TMB) ,PIK3CA ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Abstract Background Camrelizumab plus apatinib have demonstrated robust antitumor activity and safety in patients with advanced cervical cancer (CLAP study; NCT03816553). We herein present the updated long‐term results of the CLAP study and explore potential biomarkers for survival. The outcomes of patients who underwent immune checkpoint inhibitor (ICI) retreatment were also reported. Methods In this phase II trial, eligible patients received camrelizumab 200 mg intravenously every two weeks and apatinib 250 mg orally once daily in 4‐week cycles for up to two years. Treatment was continued until disease progression, unacceptable toxicity, or withdrawal of consent. Results Between January 21 and August 1, 2019, a total of 45 patients were enrolled. Data were analyzed as of July 31, 2023, representing > 48 months since treatment initiation for all patients. Nine (20.0%) patients completed the 2‐year study. The median duration of response (DOR) was 16.6 months, and 45.0% of patients achieved a DOR of ≥ 24 months. The 12‐month progression‐free survival (PFS) rate was 40.7% (95% confidence interval [CI], 25.2‐55.6), with an 18‐month PFS rate of 37.8% (95% CI, 22.7‐52.8). The median overall survival (OS) was 20.3 months (95% CI, 9.3‐36.9), and the 24‐month OS rate was 47.8% (95% CI, 31.7‐62.3). Age > 50 years, programmed death‐ligand 1 (PD‐L1) combined positive score (CPS) ≥ 1 (versus [vs.] < 1), CPS ≥ 10 (vs. < 1), high tumor mutational burden, and PIK3CA mutations were associated with improved PFS (hazard ratio [HR] < 1) and longer OS (HR < 1). Eight patients who initially responded in the CLAP trial but later experienced disease progression were retreated with ICIs. Among them, 2 (25.0%) achieved a partial response, while 5 (62.5%) had stable disease. Notably, four patients who received retreatment with ICIs survived for more than 45 months. No new safety signals were identified in the present study. Conclusion Long‐term survival follow‐up data demonstrated that camrelizumab plus apatinib has robust, sustained, and durable efficacy in patients with advanced cervical cancer who progress after first‐line platinum‐based chemotherapy. No new safety signals were noted with long‐term treatment.
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- 2024
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19. Association of triglyceride-glucose index and its related parameters with atherosclerotic cardiovascular disease: evidence from a 15-year follow-up of Kailuan cohort
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Xue Xia, Shuohua Chen, Xue Tian, Qin Xu, Yijun Zhang, Xiaoli Zhang, Jing Li, Shouling Wu, and Anxin Wang
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Triglyceride glucose (TyG) ,Triglyceride glucose-body mass index (TyG-BMI) ,Triglyceride glucose-waist circumference (TyG-WC) ,Triglyceride glucose-waist-height ratio (TyG-WHtR) ,Atherosclerotic cardiovascular disease (ASCVD) ,Diseases of the circulatory (Cardiovascular) system ,RC666-701 - Abstract
Abstract Background Triglyceride glucose (TyG) index and its related parameters have been introduced as cost-effective surrogate indicators of insulin resistance, while prospective evidence of their effects on atherosclerotic cardiovascular disease (ASCVD) remained scattered and inconsistent. We aimed to evaluate the association of TyG and its related parameters with new-onset ASCVD, and the predictive capacity were further compared. Method A total of 95,342 ASCVD-free participants were enrolled from the Kailuan study. TyG and its related parameters were defined by fasting blood glucose, triglyceride, body mass index (BMI), waist circumstance (WC) and waist-to-height ratio (WHtR). The primary outcome was incident ASCVD, comprising myocardial infarction (MI) and ischemic stroke (IS). Cox proportional hazard models and restricted cubic spline (RCS) analyses were adopted to investigate the association between each index and ASCVD. The C-index, integrated discrimination improvement (IDI), and net reclassification improvement (NRI) were used for comparison of their predictive value for ASCVD. Results During a median follow-up of 15.0 years, 8,031 new cases of ASCVD were identified. The incidence rate of ASCVD increased along with elevated levels of each index, and the relationships were found to be nonlinear in the RCS analyses. The hazard ratio (HR) and 95% confidence interval (95% CI) for ASCVD was 1.39 (1.35, 1.43), 1.46 (1.41, 1.50), 1.50 (1.46, 1.55), and 1.52 (1.48, 1.57) per 1 IQR increase of baseline TyG, TyG-BMI, TyG-WC, and TyG-WHtR, respectively, and the association were more pronounced for females and younger individuals aged
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- 2024
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20. Effects of percutaneous endovascular angioplasty for severe stenosis or occlusion of subclavian artery
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Tong-Yuan Zhao, Gang-Qin Xu, Jiang-Yu Xue, Dong-Yang Cai, Bo-Wen Yang, Yue-Yang Ba, Chen-Yi Feng, Tian-Xiao Li, Bu-Lang Gao, and Zhong-Can Chen
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Severe subclavian artery stenosis ≥ 70% ,Occlusion ,Percutaneous endovascular angioplasty ,Stent deployment ,Balloon expansion ,Medicine ,Science - Abstract
Abstract To investigate the effect and safety of percutaneous endovascular angioplasty (PEA) with optional stenting for the treatment of severe stenosis or occlusion of subclavian artery, patients with severe stenosis ≥ 70% or occlusion of subclavian artery treated with PEA were retrospectively enrolled. The clinical data were analyzed. A total of 222 patients were retrospectively enrolled, including 151 males (68.0%) and 71 females (32.0%) aged 48–86 (mean 63.9 ± 9.0) years. Forty-seven (21.2%) patients had comorbidities. Subclavian artery stenosis ≥ 70% was present in 201 (90.5%) patients and complete subclavian occlusion in 21 (9.5%) cases. Angioplasty was successfully performed in all (100%) patients. Balloon-expandable stents were used in 190 (85.6%) cases, and self-expandable stents in 20 (9.0%) cases. Only 12 (5.4%) cases were treated with balloon dilation only. Among 210 patients treated with stent angioplasty, 71 (33.8% or 71/210) cases underwent balloon pre-dilation, 139 (66.2% or 139/210) had direct deployment of balloon-expandable stents, and 2 (1.0% or 2/210) experienced balloon post-dilation. Distal embolization protection devices were used in 5 (2.3% or 5/222) cases. Periprocedural complications occurred in 3 (1.4%) patients, including aortic dissection in 2 (0.9%) cases and right middle cerebral artery embolism in 1 (0.5%). No hemorrhage occurred. Among 182 (82.0%) patients with 6-month follow-up, restenosis > 70% occurred in 1 (0.5%) patient, and among 68 (30.6%) patients with 12-month follow-up, restenosis > 70% took place in 11 (16.2%) patients. Percutaneous endovascular angioplasty can be safely and efficiently performed for the treatment of severe stenosis ≥ 70% or occlusion of subclavian artery.
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- 2024
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21. Alpha-Hederin induces incomplete autophagic injury in non-small cell lung cancer by interfering with the lysosomal acidification
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Feng Jin, Xiaomin Jiang, Xiaochen Ni, Shilong Yu, Feng Wu, Xinlin Shi, Defang Mao, Haibo Wang, Qingtong Shi, Yanqing Liu, and Qin Xu
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α-Hederin ,Incomplete autophagy ,Lysosomal acidification ,Non-small cell lung cancer ,Antitumor ,Medicine ,Science - Abstract
Abstract Lung cancer is the most common oncological disease worldwide, with non-small cell lung cancer accounting for approximately 85% of lung cancer cases. α-Hederin is a monodesmosidic triterpenoid saponin isolated from the leaves of Hedera helix L. or Nigella sativa and has been extensively studied for its antitumor activity against a variety of tumor cells. It has been suggested that α-Hederin is a potential regulator of autophagy and has high promise for application. However, the specific mechanism and characteristics of α-Hederin in regulating autophagy are not well understood. In this study, we confirmed the potential of α-Hederin application in lung cancer treatment and comprehensively explored the mechanism and characteristics of α-Hederin in regulating autophagy in lung cancer cells. Our results suggest that α-Hederin is an incomplete autophagy inducer that targets mTOR to activate the classical autophagic pathway, inhibits lysosomal acidification without significantly affecting the processes of autophagosome transport, lysosome biogenesis, autophagosome and lysosome fusion, and finally leads to impaired autophagic flux and triggers autophagic damage in NSCLC.
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- 2024
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22. The Influence of Non-High-Density Lipoprotein Cholesterol on the Efficacy of Genotype-Guided Dual Antiplatelet Therapy in Preventing Stroke Recurrence
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Qin Xu, Xia Meng, Hao Li, Xuewei Xie, Jing Jing, Jinxi Lin, Yong Jiang, Yilong Wang, Xingquan Zhao, Zixiao Li, Liping Liu, Anxin Wang, and Yongjun Wang
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chance-2 ,stroke ,ticagrelor ,clopidogrel ,non–high-density lipoprotein cholesterol ,Diseases of the circulatory (Cardiovascular) system ,RC666-701 - Abstract
Background and Purpose Non-high-density lipoprotein cholesterol (non-HDL-C), which represents the total cholesterol content of all pro-atherogenic lipoproteins, has recently been included as a new target for lipid-lowering therapy in high-risk atherosclerotic patients in multiple guidelines. Herein, we aimed to explore the relationship between non-HDL-C level and the efficacy and safety of ticagrelor-aspirin versus clopidogrel-aspirin in preventing stroke recurrence. Methods This study comprised a post hoc analysis of the CHANCE-2 (Ticagrelor or Clopidogrel in High-Risk Patients with Acute Nondisabling Cerebrovascular Events II) trial, from which 5,901 patients with complete data on non-HDL-C were included and categorized by median non-HDL-C levels, using a cutoff of 3.5 mmol/L. The primary efficacy and safety outcomes were recurrent stroke and severe or moderate bleeding within 90 days. Results Ticagrelor-aspirin significantly reduced the risk of recurrent stroke in patients with low non-HDL-C (71 [4.8%] vs. 119 [7.7%]; adjusted hazard ratio [HR] 0.54; 95% confidence interval [CI], 0.40–0.74), but not in those with high non-HDL-C (107 [7.3%] vs. 108 [7.6%]; adjusted HR, 0.88; 95% CI, 0.67–1.16), compared with clopidogrel-aspirin (P for interaction=0.010). When analyzed as a continuous variable, the benefit of ticagrelor-aspirin for recurrent stroke decreased as non-HDL-C levels increased. No significant differences in the treatment assignments across the non-HDL-C groups were observed in terms of the rate of severe or moderate bleeding (5 [0.3%] vs. 8 [0.5%] in the low non-HDL-C group; 4 [0.3%] vs. 2 [0.1%] in the high non-HDL-C group; P for interaction=0.425). Conclusion CHANCE-2 participants with low non-HDL-C levels received more clinical benefit from ticagrelor-aspirin versus clopidogrel-aspirin compared to those with high non-HDL-C, following minor ischemic stroke or transient ischemic attack.
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- 2024
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23. Establishment of in-hospital nutrition support program for middle-aged and elderly patients with acute decompendated heart failure
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Yongliang Li, Fang Zhu, Dongmei Ren, Jianping Tong, Qin Xu, Minhui Zhong, Wei Zhao, Xia Duan, and Xiangdong Xu
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Acute decompensated heart failure ,Nutrition support ,Delphi process ,Diseases of the circulatory (Cardiovascular) system ,RC666-701 - Abstract
Abstract Objective To construct a nutrition support program for middle-aged and elderly patients with acute decompensated heart failure (ADHF) during hospitalization. Methods Based on the JBI Evidence-Based Health Care Model as the theoretical framework, the best evidence was extracted through literature analysis and a preliminary nutrition support plan for middle-aged and elderly ADHF patients during hospitalization was formed. Two rounds of expert opinion consultation were conducted using the Delphi method. The indicators were modified, supplemented and reduced according to the expert’s scoring and feedback, and the expert scoring was calculated. Results The response rates of the experts in the two rounds of consultation were 86.7% and 100%, respectively, and the coefficient of variation (CV) for each round was between 0.00% and 29.67% (all
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- 2024
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24. Significance of atherosclerotic plaque location in recanalizing non-acute long-segment occlusion of the internal carotid artery
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Tong-Yuan Zhao, Gang-Qin Xu, Jiang-Yu Xue, Wei-Xing Bai, Dong-Yang Cai, Bo-Wen Yang, Wei-Yu Shi, Tian-Xiao Li, and Bu-Lang Gao
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Hybrid operation ,Atherosclerotic plaque ,Long segment occlusion ,Internal carotid artery ,Complications ,Medicine ,Science - Abstract
Abstract To investigate the significance of atherosclerotic plaque location in hybrid surgery comprising both endovascular recanalization approaches and carotid endarterectomy for symptomatic atherosclerotic non-acute long-segment occlusion of the internal carotid artery (ICA), 162 patients were enrolled, including 120 (74.1%) patients in the proximal plaque group and 42 (25.9%) in the distal plaque group. Surgical recanalization was performed in all patients, with successful recanalization in 119 (99.2%) patients in the proximal and 39 (92.9%) in the distal plaque group. The total successful recanalization rate was 97.5% (158/162) with a failure rate of 2.5% (4/162). Periprocedural complications occurred in 5 (4.2% or 5/120) patients in the proximal plaque group, including neck infection in two (1.7%), recurrent nerve injury in 1 (0.8%), and laryngeal edema in 2 (1.7%), and 2 (4.8%) in the distal plaque group, including femoral puncture infection in 2 (4.8%). No severe complications occurred in either group. Univariate analysis showed plaque location was a significant (P = 0.018) risk factor for successful recanalization, and multivariate analysis indicated that the plaque location remained a significant independent risk factor for recanalization success (P = 0.017). In follow-up 6–48 months after the recanalization surgery, reocclusion occurred in two (2.8%) patients in the proximal plaque group and 4 (13.3%) in the distal plaque group. In conclusion, although hybrid surgery achieves similar outcomes in patients with ICA occlusion caused by either proximal or distal atherosclerotic plaques, plaque location may be a significant risk factor for successful recanalization of symptomatic non-acute long-segment ICA occlusion.
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- 2024
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25. FGFR inhibition blocks NF-ĸB-dependent glucose metabolism and confers metabolic vulnerabilities in cholangiocarcinoma
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Yuanli Zhen, Kai Liu, Lei Shi, Simran Shah, Qin Xu, Haley Ellis, Eranga R. Balasooriya, Johannes Kreuzer, Robert Morris, Albert S. Baldwin, Dejan Juric, Wilhelm Haas, and Nabeel Bardeesy
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Science - Abstract
Abstract Genomic alterations that activate Fibroblast Growth Factor Receptor 2 (FGFR2) are common in intrahepatic cholangiocarcinoma (ICC) and confer sensitivity to FGFR inhibition. However, the depth and duration of response is often limited. Here, we conduct integrative transcriptomics, metabolomics, and phosphoproteomics analysis of patient-derived models to define pathways downstream of oncogenic FGFR2 signaling that fuel ICC growth and to uncover compensatory mechanisms associated with pathway inhibition. We find that FGFR2-mediated activation of Nuclear factor-κB (NF-κB) maintains a highly glycolytic phenotype. Conversely, FGFR inhibition blocks glucose uptake and glycolysis while inciting adaptive changes, including switching fuel source utilization favoring fatty acid oxidation and increasing mitochondrial fusion and autophagy. Accordingly, FGFR inhibitor efficacy is potentiated by combined mitochondrial targeting, an effect enhanced in xenograft models by intermittent fasting. Thus, we show that oncogenic FGFR2 signaling drives NF-κB-dependent glycolysis in ICC and that metabolic reprogramming in response to FGFR inhibition confers new targetable vulnerabilities.
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- 2024
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26. Metatronics-inspired high-selectivity metasurface filter
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Lv Qihao, Qin Xu, Hu Mingzhe, Li Peihang, Zhang Yongjian, and Li Yue
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metasurface filter ,high-selectivity ,metatronics ,dispersion synthesis ,Physics ,QC1-999 - Abstract
Metatronic circuits extend the concept of subwavelength-scaled lumped circuitry from electronics to optics and photonics, providing a distinctive design paradigm for versatile optical nanocircuits. Here, based on the design of optical nanocircuits using metatronics concept, we introduce a general approach for dispersion synthesis with metasurface to achieve high-selectivity filtering response. We theoretically and numerically demonstrate how to achieve basic circuit lumped elements in metatronics by tailoring the dispersion of metasurface at the frequency of interest. Then, following the Butterworth filter design method, the meticulously designed metasurface, acting as lumped elements, are properly stacked to achieve a near-rectangular filtering response. Compared to the conventional designs, the proposed approach can simultaneously combine high selectivity with the theoretically widest out-of-band rejection in a considerably simple and time-efficient manner of circuit assembly, similar to electronic circuits, without extensive numerical simulations and complex structures. This dispersion synthesis approach provides exciting possibilities for high-performance metasurface design and future integrated circuits and chips.
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- 2024
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27. Altering biomolecular condensates as a potential mechanism that mediates cannabidiol effect on glioblastoma
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Wang, Lei P., Chagas, Pablo Shimaoka, Salles, Évila Lopes, Naeini, Sahar Emami, Gouron, Jules, Rogers, Hannah M., Khodadadi, Hesam, Bhandari, Bidhan, Alptekin, Ahmet, Qin, Xu, Vaibhav, Kumar, Costigliola, Vincenzo, Hess, David C., Dhandapani, Krishnan M., Arbab, Ali S., Rutkowski, Martin J., Yu, Jack C., and Baban, Babak
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- 2024
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28. Fostering the efficiency of the natural resource market for a comprehensive, long-term energy transition
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Qin, Xu and Yong, Yu
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- 2024
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29. Potential scale of industrial outputs of the bronze bell casting industry in 500 BCE China
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Li, Kin Sum (Sammy), Liu, Haiwang, Wilson, Keith, Chen, Xueqing, Lee, Kin San, Fang, Qin, Qin, Xu, Liu, Yu, Chun, Tsz Hin, and Jiang, Haoran
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- 2024
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30. Two-layer optimal scheduling of distribution network-multi-microgrids based on master–slave game
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Zhitong Chen, Rong Jia, Songkai Wang, Haipeng Nan, Liangliang Zhao, Xingang Zhang, Shaoyi Hu, and Qin Xu
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distribution network ,microgrid ,master–slave game ,particle swarm optimization ,Kriging metamodel ,General Works - Abstract
With the increase in the number of microgrids in the same distribution area usually belong to different subjects of interest, forming a multi-subject game pattern. Considering the interests of distribution networks and microgrids, a distribution network-multi-microgrid master–slave game model is established by selecting distribution networks as game masters and microgrids as game slaves. A master–slave game equilibrium algorithm based on a Kriging metamodel is proposed. The method replaces the microgrid energy internal management model with a proposed Kriging metamodel. In the iterative optimization process, the particle swarm optimization algorithm is used to generate new sampling points and modify the model in a targeted way so as to quickly and accurately obtain the transaction price and output plan of each microgrid. The algorithm does not need all the parameters of the microgrid, which both achieves the purpose of protecting the privacy of the microgrid and avoids a large number of calls to the lower optimization model, effectively reducing the amount of computation and improving the efficiency of the solution. The results show that the overall operating costs of the three microgrids used in the case study are reduced by 1.4%, 4.6%, and 1.6%, respectively, which effectively balances the interests of multiple parties in the microgrid system; the revenue of the distribution network is increased by 50.6%.
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- 2024
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31. Unveiling the therapeutic potential of Lobaria extract and its depsides/depsidones in combatting Aβ42 peptides aggregation and neurotoxicity in Alzheimer’s disease
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Meixia Yang, Caishan Yan, Dusadee Ospondpant, Lisong Wang, Shengying Lin, Wai Lun Tang, Tina Tingxia Dong, Penger Tong, Qin Xu, and Karl Wah Keung Tsim
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Alzheimer’s disease ,Aβ peptides ,Lobaria extracts ,depsides/depsidones ,inhibition ,disaggregation ,Therapeutics. Pharmacology ,RM1-950 - Abstract
Background: The development of effective inhibitors that can inhibit amyloid β (Aβ) peptides aggregation and promote neurite outgrowth is crucial for the possible treatment of Alzheimer’s disease (AD). Lobaria (Schreb.) Hoffm., a traditional Chinese medicine used in Himalaya region for inflammatory diseases, contains depsides/depsidones (DEPs) such as gyrophoric acid, norstictic acid, and stictic acid known for their anti-cancer and anti-inflammation properties.Methods:Lobaria extracts were analyzed using HPLC to identify DEPs and establish standards. The inhibitory effects of Lobaria on Aβ42 fibrillization and depolymerization were assessed using various approaches with biophysical and cellular methods. The neuroprotective activity of Lobaria extracts and its DEPs aganist Aβ-mediated cytotoxicity was also evaluated.Results: Norstictic and stictic acid were found in the water extract, while norstictic, stictic, and gyrophoric acid were detected in the ethanol extract of Lobaria. Both extracts, and their DEPs effectively inhibited Aβ42 fibrillation and disaggregate mature Aβ42 fibrils. Notably, the ethanol extract showed superior inhibitory effect compared to the water extract, with gyrophoric acid being the most effective DEPs. Additionally, herbal extract-treated Aβ42 aggregation species significantly protected neuronal cells from Aβ42-induced cell damage and promoted neurite outgrowth.Conclusion: This study is the first to investigate the effect of Lobaria on Aβ42 and neuronal cell in AD. Given that Lobaria is commonly used in ethnic medicine and food with good safety records, our findings propose that Lobaria extracts and DEPs have potential as neuroprotective and therapeutic agents for AD patients.
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- 2024
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32. Refining and toughening mechanism of Nb-16Si-20Ti-2ZrC-xY composite materials by constitutional supercooling and edge-to-edge model
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Dezhi Chen, Shu Wang, Ruirun Chen, Qi Wang, Qin Xu, Liang Wang, and Hengzhi Fu
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Nb-Si ,Edge-to-edge model ,Refinement ,Materials of engineering and construction. Mechanics of materials ,TA401-492 - Abstract
To explore the mechanism of the refinement and toughening of Nb-Si-based composites with different Y contents, Nb-16Si-20Ti-2ZrC-(0, 0.05, 0.1, 0.5) Y composites were prepared by arc melting. The results show that Y has a positive effect on the shift of the eutectic point and promotes it moving to the low Si side. Adding 0.1 at.% Y refines the Nbss phase from 38.7 to 11.2 μm. Y2O3 forms due to the strong affinity of Y to O. The edge-to-edge model predicted that there was no phase relationship between Y2O3 and Nbss and primary γ-(Nb,X)5Si3, which was verified by TEM. Y refines the Nbss and the Nbss/γ-(Nb,X)5Si3 cluster with compositional supercooling. As Y content increased, the fracture toughness at room temperature increased and decreased. When the Y content was 0.1 %, the KQ value reached 17.2 MPa·m1/2. The internal oxygen consumption of Y and the refinement of Nbss lead to the toughness improvement of the Nbss phase, promoting the formation of a large number of dimples. Microcracks form in the fine γ-(Nb,X)5Si3 of eutectoid cluster, which hinder the primary crack growth and enhance the ambient fracture toughness. These findings are of great significance for the further development of high-performance Nb-Si-based matrix composites.
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- 2024
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33. Integrative transcriptome-proteome approach reveals key hypoxia-related features involved in the neuroprotective effects of Yang Xue oral liquid on Alzheimer’s and Parkinson’s disease
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Xiang-Yang Chen, Ming-Rong Cheng, Chen-Chen Tang, Chen-Qin Xu, Yi-Lang Zhong, Yuan Gao, Xue-Xiang Cheng, and Jian Chen
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Alzheimer’s disease ,Parkinson’s disease ,transcriptome ,proteome ,signature ,Therapeutics. Pharmacology ,RM1-950 - Abstract
Introduction: This study investigates the role of hypoxia-related genes in the neuroprotective efficacy of Yang Xue oral liquid (YXKFY) in Alzheimer’s disease (AD) and Parkinson’s disease (PD).Methods and results: Using differential expression and weighted gene co-expression network analysis (WGCNA), we identified 106 and 9 hypoxia-associated genes in AD and PD, respectively, that are implicated in the transcriptomic and proteomic profiles. An artificial intelligence-driven hypoxia signature (AIDHS), comprising 17 and 3 genes for AD and PD, was developed and validated across nine independent cohorts (n = 1713), integrating 10 machine learning algorithms and 113 algorithmic combinations. Significant associations were observed between AIDHS markers and immune cells in AD and PD, including naive CD4+ T cells, macrophages, and neutrophils. Interactions with miRNAs (hsa-miR-1, hsa-miR-124) and transcription factors (USF1) were also identified. Single-cell RNA sequencing (scRNA-seq) data highlighted distinct expression patterns of AIDHS genes in various cell types, such as high expression of TGM2 in endothelial cells, PDGFRB in endothelial and mesenchymal cells, and SYK in microglia. YXKFY treatment was shown to repair cellular damage and decrease reactive oxygen species (ROS) levels. Notably, genes with previously dysfunctional expression, including FKBPL, TGM2, PPIL1, BLVRB, and PDGFRB, exhibited significant recovery after YXKFY treatment, associated with riboflavin and lysicamine.Conclusion: The above genes are suggested to be central to hypoxia and neuroinflammation responses in AD and PD, and are potential key mediators of YXKFY’s neuroprotective action.
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- 2024
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34. Sclerotinia rot of Zephyranthes candida caused by Sclerotinia sclerotiorum and Sclerotinia minor
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Fuqiang Yin, Zhen Song, Lu Liu, Qin Xu, Jiamin Jiang, Zhien Xiao, Tiantian Guo, Yuxin Liu, Shaotian Zhang, Yue Yuan, Wanli Ma, and Ming Liu
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sclerotinia rot ,Zephyranthes candida ,multigene phylogeny ,Sclerotinia sclerotiorum ,Sclerotinia minor ,Microbiology ,QR1-502 - Abstract
Sclerotinia rot is a serious disease that occurs on Zephyranthes candida. A thorough understanding of the pathogenic fungal species and understanding the biological characteristics are important for controlling sclerotinia. Fungal strains were isolated from the diseased leaves of Z. candida through tissue isolation. Koch’s hypothesis screened pathogenic strains by pathogenicity of healthy leaves, including re-isolation and identification. A multigene phylogenetic tree was constructed by extracting genomic DNA from pathogenic strains and measuring the nucleotide sequences at four sites, including the internal transcribed spacer (ITS), RNA polymerase II second largest subunit (RPB2), glyceraldehyde-3-phosphate dehydrogenase (G3PDH), and heat shock protein 60 (HSP60). Morphological characteristics of the fungal structures were evaluated through microscopic analysis. The growth of pathogens was observed and recorded under different pH, different temperatures, different carbon sources and different nitrogen sources to clarify their biological characteristics. Representative strains D7, D13, X4, and X15 infected Z. candida and caused sclerotinia rot. At the beginning of the culture, white flocculent fungal hyphae appeared on the potato dextrose agar (PDA) medium, and black spherical to irregular-shaped sclerotia appeared at the edge of the colony after 7 days. The diameter of the sclerotia was 2.4–8.6 mm and 0.4–0.9 mm, respectively. One sclerotium was able to germinate from 1 to 5 apothecia. Ascus were cylindrical or spindle-shaped, with a size of 110.0–120.0 × 9.2–11.6 μm. One ascus contained eight colorless, oval ascospores, with a size of 8.4–12.0 × 4.5–5.5 μm. Based on the phylogenetic tree constructed with the gene sequences for ITS, G3PDH, HSP60, and RPB2, D7 and D13 shared 99% homology with sclerotinia sclerotiorum, whereas X4 and X15 shared 99% homology with sclerotinia minor. S. sclerotiorum growth was more suitable when the culture temperature was 15°C–25°C, pH 5.0, carbon source was maltose and nitrogen source was yeast powder. S. minor growth was more suitable when the culture temperature was 15°C, pH 5.0, the carbon source was glucose, and the nitrogen source was yeast powder. The results identified the pathogens as S. sclerotiorum and S. minor. To the best of our knowledge, this is the first report of S. sclerotiorum and S. minor causing sclerotinia rot on Z. candida. We herein aimed to identify the causal agent of sclerotinia rot of Z. candida in China based on morphological characteristics, molecular identification, and pathogenicity tests. Performed the experiments on the biological characteristics, to understand the law of disease occurrence. We also evaluated methods for the effective control of this disease. Our findings provide support for further studies on the pathogenesis mechanism of sclerotinia rot.
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- 2024
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35. In vitro interaction of naphthoquine with ivermectin, atovaquone, curcumin, and ketotifen in the asexual blood stage of Plasmodium falciparum 3D7
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Ruotong Liu, Guoming Li, Mei Li, Baogang Wang, Dongna Zhang, Likun Xu, Liangliang Zhao, Ruhe Liao, Qin Xu, Zhu-Chun Bei, and Yabin Song
- Subjects
antimalarial drugs ,Plasmodium falciparum ,malaria ,pharmacodynamics ,drug interactions ,Microbiology ,QR1-502 - Abstract
ABSTRACT Naphthoquine is a promising candidate for antimalarial combination therapy. Its combination with artemisinin has demonstrated excellent efficacy in clinical trials conducted across various malaria-endemic areas. A co-formulated combination of naphthoquine and azithromycin has also shown high clinical efficacy for malaria prophylaxis in Southeast Asia. Developing new combination therapies using naphthoquine will provide additional arsenal responses to the growing threat of artemisinin resistance. Furthermore, due to its long half-life, the possible interaction of naphthoquine with other drugs also needs attention. However, studies on its pharmacodynamic interactions with other drugs are still limited. In this study, the in vitro interactions of naphthoquine with ivermectin, atovaquone, curcumin, and ketotifen were evaluated in the asexual stage of Plasmodium falciparum 3D7. By using the combination index analysis and the SYBR Green I-based fluorescence assay, different interaction patterns of selected drugs with naphthoquine were revealed. Curcumin showed a slight but significant synergistic interaction with naphthoquine at lower effect levels, and no antagonism was observed across the full range of effect levels for all tested ratios. Atovaquone showed a potency decline when combined with naphthoquine. For ivermectin, a significant antagonism with naphthoquine was observed at a broad range of effect levels below 75% inhibition, although no significant interaction was observed at higher effect levels. Ketotifen interacted with naphthoquine similar to ivermectin, but significant antagonism was observed for only one tested ratio. These findings should be helpful to the development of new naphthoquine-based combination therapy and the clinically reasonable application of naphthoquine-containing therapies.IMPORTANCEPharmacodynamic interaction between antimalarials is not only crucial for the development of new antimalarial combination therapies but also important for the appropriate clinical use of antimalarials. The significant synergism between curcumin and naphthoquine observed in this study suggests the potential value for further development of new antimalarial combination therapy. The finding of a decline in atovaquone potency in the presence of naphthoquine alerts to a possible risk of treatment or prophylaxis failure for atovaquone–proguanil following naphthoquine-containing therapies. The observation of antagonism between naphthoquine and ivermectin raised a need for concern about the applicability of naphthoquine-containing therapy in malaria-endemic areas with ivermectin mass drug administration deployed. Considering the role of atovaquone–proguanil as a major alternative when first-line artemisinin-based combination therapy is ineffective and the wide implementation of ivermectin mass drug administration in malaria-endemic countries, the above findings will be important for the appropriate clinical application of antimalarials involving naphthoquine-containing therapies.
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- 2024
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36. Patient compliance to sublingual immunotherapy for mite-induced allergic rhinitis: A retrospective study
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Wen-Jin Wan, BN, Qiu-Yan Xu, MD, Mei-Ping Lu, MD, PhD, Qian Lyu, BN, Zi-Jun Gu, MSc, Jing Yuan, BN, Xin-Jie Zhu, MD, Xin-Yan Cui, MD, PhD, Qin Xu, MSc, and Lei Cheng, MD, PhD
- Subjects
Allergic rhinitis ,Allergen immunotherapy ,Sublingual immunotherapy ,Compliance ,Patient education ,Immunologic diseases. Allergy ,RC581-607 - Abstract
Background: Compliance to sublingual immunotherapy (SLIT) is generally low, resulting in reduced short- and long-term clinical efficacy. Compliance is a critical factor determining the success of allergic rhinitis (AR) treatment. Objective: To analyze the compliance of patients with house dust mite (HDM)-induced AR to SLIT and the impact of coronavirus disease 2019 (COVID-19) on compliance. Methods: The clinical data of 3117 patients with HDM-induced AR who started SLIT between July 2018 and April 2022 were retrospectively reviewed. We assessed the reasons for non-compliance and the changes in non-compliance during the COVID-19 pandemic compared to the pre-pandemic period. Results: Of 3117 patients, 507 (16.27%) patients (ages, 5–67 years) were identified as non-compliant. The most common reason for non-compliance was poor efficacy (27.22%). The non-compliance rate was highest during 24–36 months of SLIT (28.13%, 153/544), followed by 12–24 months (7.02%, 91/1296). Non-compliance was significantly higher in adolescents/adults than in children (P = 0.000). Although the generalized linear model analysis indicated that compliance was affected by the COVID-19 pandemic during 3–6 months of SLIT, the overall compliance to SLIT was not significantly affected by the pandemic, according to the Kaplan-Meier survival analysis. Conclusions: The non-compliance rate of SLIT in this study was low, and poor efficacy was the most common reason for non-compliance. The compliance of adolescents/adults was lower than that of children. The COVID-19 pandemic did not significantly impact compliance to SLIT, which is an appropriate strategy for the home treatment of AR patients during major public health events.
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- 2024
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37. Cognitively-Inspired Multi-Scale Spectral-Spatial Transformer for Hyperspectral Image Super-Resolution.
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Qin Xu, Shiji Liu, Jinpei Liu, and Bin Luo 0001
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- 2024
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38. Total retinal detachment combined with a novel nonsense-mutation in the COL2A1 gene: A case report
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Qin Xu, Yaling Feng, Xiaohong Xiang, and Hongbin Lv
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Surgery ,RD1-811 - Published
- 2024
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39. Anchored sutures for fixation of the anterolateral thigh flap and prevention of orocutaneous fistula in oral and oropharyngeal cancer reconstruction
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Xin, Pengfei, Huang, Chunming, Qin, Xu, and Hu, Chuanyu
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- 2023
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40. Nonparametric binary regression models with spherical predictors based on the random forests kernel
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Qin, Xu and Gao, Huiqun
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- 2023
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41. Finback: a web-based data collection system at SSRF biological macromolecular crystallography beamlines
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Feng Yu, Ke Liu, Huan Zhou, Minjun Li, Huating Kong, Kunhao Zhang, Xingya Wang, Weiwei Wang, Qin Xu, Qiangyan Pan, Zhijun Wang, and Qisheng Wang
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macromolecular crystallography beamline ,data collection ,synchrotron beamline control ,graphical user interface ,Nuclear and particle physics. Atomic energy. Radioactivity ,QC770-798 ,Crystallography ,QD901-999 - Abstract
An integrated computer software system for macromolecular crystallography (MX) data collection at the BL02U1 and BL10U2 beamlines of the Shanghai Synchrotron Radiation Facility is described. The system, Finback, implements a set of features designed for the automated MX beamlines, and is marked with a user-friendly web-based graphical user interface (GUI) for interactive data collection. The Finback client GUI can run on modern browsers and has been developed using several modern web technologies including WebSocket, WebGL, WebWorker and WebAssembly. Finback supports multiple concurrent sessions, so on-site and remote users can access the beamline simultaneously. Finback also cooperates with the deployed experimental data and information management system, the relevant experimental parameters and results are automatically deposited to a database.
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- 2024
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42. Cordyceps cicadae polysaccharides attenuate diabetic nephropathy via the miR‐30a‐3p/TRIM16 axis
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Rong Zheng, Qin Xu, Yiwen Wang, Yifei Zhong, and Rong Zhu
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CCP ,Diabetic nephropathy ,miR‐30a‐3p ,Diseases of the endocrine glands. Clinical endocrinology ,RC648-665 - Abstract
Abstract Objective The molecular mechanism of the protective effect of Cordyceps cicadae polysaccharides (CCPs) on renal tubulointerstitial fibrosis in diabetic nephropathy (DN) is still unclear. This study aims to further understand the molecular mechanisms behind the therapeutic benefits of CCP on diabetic nephropathy. Methods Mice were randomly assigned into six groups (n = 8). Cordyceps cicadae polysaccharide dissolved in 5% dimethyl sulfoxide was administered by gavage for 12 consecutive weeks. The CCP doses were divided into low, medium, and high, 75, 150, and 300 mg/kg/day, respectively. The efficacy of CCP was determined by assessing the renal function and histological alterations in diabetic db/db mice. The degree of glomerular mesangial dilatation and sclerosis was evaluated using semiquantitative markers. Cell viability, apoptosis, epithelial–mesenchymal transition (EMT), inflammation, oxidative stress, and mitochondrial reactive oxygen species (ROS) in high glucose (HG)‐cultured MPC5 podocytes were determined. The interaction of miR‐30a‐3p and tripartite motif‐containing protein 16 (TRIM16) was examined by luciferase reporter assay. Western blotting, reverse transcription‐polymerase chain reaction, and immunofluorescence were used to analyze gene and protein expressions. Results The in vivo findings illustrated that CCP may protect mice with type 2 diabetes from inflammation and oxidative damage (P
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- 2024
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43. Pick-up single-cell proteomic analysis for quantifying up to 3000 proteins in a Mammalian cell
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Yu Wang, Zhi-Ying Guan, Shao-Wen Shi, Yi-Rong Jiang, Jie Zhang, Yi Yang, Qiong Wu, Jie Wu, Jian-Bo Chen, Wei-Xin Ying, Qin-Qin Xu, Qian-Xi Fan, Hui-Feng Wang, Li Zhou, Ling Wang, Jin Fang, Jian-Zhang Pan, and Qun Fang
- Subjects
Science - Abstract
Abstract The shotgun proteomic analysis is currently the most promising single-cell protein sequencing technology, however its identification level of ~1000 proteins per cell is still insufficient for practical applications. Here, we develop a pick-up single-cell proteomic analysis (PiSPA) workflow to achieve a deep identification capable of quantifying up to 3000 protein groups in a mammalian cell using the label-free quantitative method. The PiSPA workflow is specially established for single-cell samples mainly based on a nanoliter-scale microfluidic liquid handling robot, capable of achieving single-cell capture, pretreatment and injection under the pick-up operation strategy. Using this customized workflow with remarkable improvement in protein identification, 2449–3500, 2278–3257 and 1621–2904 protein groups are quantified in single A549 cells (n = 37), HeLa cells (n = 44) and U2OS cells (n = 27) under the DIA (MBR) mode, respectively. Benefiting from the flexible cell picking-up ability, we study HeLa cell migration at the single cell proteome level, demonstrating the potential in practical biological research from single-cell insight.
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- 2024
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44. Elasticity-controlled jamming criticality in soft composite solids
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Yiqiu Zhao, Haitao Hu, Yulu Huang, Hanqing Liu, Caishan Yan, Chang Xu, Rui Zhang, Yifan Wang, and Qin Xu
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Science - Abstract
Abstract Soft composite solids are made of inclusions dispersed within soft matrices. They are ubiquitous in nature and form the basis of many biological tissues. In the field of materials science, synthetic soft composites are promising candidates for building various engineering devices due to their highly programmable features. However, when the volume fraction of the inclusions increases, predicting the mechanical properties of these materials poses a significant challenge for the classical theories of composite mechanics. The difficulty arises from the inherently disordered, multi-scale interactions between the inclusions and the matrix. To address this challenge, we systematically investigated the mechanics of densely filled soft elastomers containing stiff microspheres. We experimentally demonstrate how the strain-stiffening response of the soft composites is governed by the critical scalings in the vicinity of a shear-jamming transition of the included particles. The proposed criticality framework quantitatively connects the overall mechanics of a soft composite with the elasticity of the matrix and the particles, and captures the diverse mechanical responses observed across a wide range of material parameters. The findings uncover a novel design paradigm of composite mechanics that relies on engineering the jamming properties of the embedded inclusions.
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- 2024
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45. Production of recombinant HPV11/16 E6/E7-MBP-His6 fusion proteins and their potential to induce cytokine secretion by immune cells in peripheral blood
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Mei-nian Xu, Mei-zhen Zhong, Si-ning Feng, Yan-qin Xu, Xiao-ming Peng, Kang Zeng, and Xiao-wen Huang
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Human papillomavirus ,E6 protein ,E7 protein ,Recombinant protein ,Maltose binding protein ,Cytokine ,Infectious and parasitic diseases ,RC109-216 - Abstract
Abstract Human papillomavirus (HPV) infection poses a significant threat to public health worldwide. Targeting the function of HPV E6 and E7 proteins and activating the host immune response against these proteins represent promising therapeutic strategies for combating HPV-related diseases. Consequently, the efficient production of soluble, high-purity E6 and E7 proteins is crucial for function and host immune response studies. In this context, we selected the pMCSG19 protein expression vector for Escherichia coli to produce soluble MBP-His6 tagged HPV11/16 E6/E7 proteins, achieving relatively high purity and yield. Notably, these proteins exhibited low toxicity to peripheral blood mononuclear cells (PBMCs) and did not compromise their viability. Additionally, the recombinant proteins were capable of inducing the secretion of multiple cytokines by immune cells in peripheral blood, indicating their potential to elicit immune responses. In conclusion, our study offers a novel approach for the production of HPV11/16 E6/E7 fusion proteins with relatively high purity and yield. The fusing HPV11/16 E6/E7 proteins to MBP-His6 tag may serve as a valuable method for large-scale protein production in future research endeavors.
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- 2024
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46. Development of a novel disulfidptosis-related lncRNA signature for prognostic and immune response prediction in clear cell renal cell carcinoma
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Ning Wang, Yifeng Hu, Shasha Wang, Qin Xu, Xiaojing Jiao, Yanliang Wang, Lei Yan, Huixia Cao, and Fengmin Shao
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Medicine ,Science - Abstract
Abstract Disulfidptosis, a novel form of regulated cell death, occurs due to the aberrant accumulation of intracellular cystine and other disulfides. Moreover, targeting disulfidptosis could identify promising approaches for cancer treatment. Long non-coding RNAs (lncRNAs) are known to be critically implicated in clear cell renal cell carcinoma (ccRCC) development. Currently, the involvement of disulfidptosis-related lncRNAs in ccRCC is yet to be elucidated. This study primarily dealt with identifying and validating a disulfidptosis-related lncRNAs-based signature for predicting the prognosis and immune landscape of individuals with ccRCC. Clinical and RNA sequencing data of ccRCC samples were accessed from The Cancer Genome Atlas (TCGA) database. Pearson correlation analysis was conducted for the identification of the disulfidptosis-related lncRNAs. Additionally, univariate Cox regression analysis, Least Absolute Shrinkage and Selection Operator Cox regression, and stepwise multivariate Cox analysis were executed to develop a novel risk prognostic model. The prognosis-predictive capacity of the model was then assessed using an integrated method. Variation in biological function was noted using GO, KEGG, and GSEA. Additionally, immune cell infiltration, the tumor mutational burden (TMB), and tumor immune dysfunction and exclusion (TIDE) scores were calculated to investigate differences in the immune landscape. Finally, the expression of hub disulfidptosis-related lncRNAs was validated using qPCR. We established a novel signature comprised of eight lncRNAs that were associated with disulfidptosis (SPINT1-AS1, AL121944.1, AC131009.3, AC104088.3, AL035071.1, LINC00886, AL035587.2, and AC007743.1). Kaplan–Meier and receiver operating characteristic curves demonstrated the acceptable predictive potency of the model. The nomogram and C-index confirmed the strong correlation between the risk signature and clinical decision-making. Furthermore, immune cell infiltration analysis and ssGSEA revealed significantly different immune statuses among risk groups. TMB analysis revealed the link between the high-risk group and high TMB. It is worth noting that the cumulative effect of the patients belonging to the high-risk group and having elevated TMB led to decreased patient survival times. The high-risk group depicted greater TIDE scores in contrast with the low-risk group, indicating greater potential for immune escape. Finally, qPCR validated the hub disulfidptosis-related lncRNAs in cell lines. The established novel signature holds potential regarding the prognosis prediction of individuals with ccRCC as well as predicting their responses to immunotherapy.
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- 2024
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47. Transfer RNA-derived small RNA tRF-Glu-CTC attenuates neointimal formation via inhibition of fibromodulin
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Qi-Lan Jiang, Jia-Ying Xu, Qing-Ping Yao, Rui Jiang, Qin Xu, Bo-Tao Zhang, Tao Li, and Jun Jiang
- Subjects
Transfer RNA (tRNA)-derived small RNAs (tsRNAs) ,Vascular smooth muscle cell ,Vascular remodeling ,Neointimal hyperplasia (NIH) ,Proliferation ,Migration ,Cytology ,QH573-671 - Abstract
Abstract Neointimal hyperplasia is a pathological vascular remodeling caused by abnormal proliferation and migration of subintimal vascular smooth muscle cells (VSMCs) following intimal injury. There is increasing evidence that tRNA-derived small RNA (tsRNA) plays an important role in vascular remodeling. The purpose of this study is to search for tsRNAs signature of neointima formation and to explore their potential functions. The balloon injury model of rat common carotid artery was replicated to induce intimal hyperplasia, and the differentially expressed tsRNAs (DE-tsRNAs) in arteries with intimal hyperplasia were screened by small RNA sequencing and tsRNA library. A total of 24 DE-tsRNAs were found in the vessels with intimal hyperplasia by small RNA sequencing. In vitro, tRF-Glu-CTC inhibited the expression of fibromodulin (FMOD) in VSMCs, which is a negative modulator of TGF-β1 activity. tRF-Glu-CTC also increased VSMC proliferation and migration. In vivo experiments showed that inhibition of tRF-Glu-CTC expression after balloon injury of rat carotid artery can reduce the neointimal area. In conclusion, tRF-Glu-CTC expression is increased after vascular injury and inhibits FMOD expression in VSMCs, which influences neointima formation. On the other hand, reducing the expression of tRF-Glu-CTC after vascular injury may be a potential approach to prevent vascular stenosis.
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- 2024
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48. Activation of autophagy by Citri Reticulatae Semen extract ameliorates amyloid-beta-induced cell death and cognition deficits in Alzheimer’s disease
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Yong Tang, Jing Wei, Xiao-Fang Wang, Tao Long, Xiaohong Xiang, Liqun Qu, Xingxia Wang, Chonglin Yu, Xingli Xiao, Xueyuan Hu, Jing Zeng, Qin Xu, Anguo Wu, Jianming Wu, Dalian Qin, Xiaogang Zhou, and Betty Yuen-Kwan Law
- Subjects
alzheimer’s disease ,amyloid-beta ,apoptosis ,autophagy ,caenorhabditis elegans ,citri reticulatae semen ,Neurology. Diseases of the nervous system ,RC346-429 - Abstract
Amyloid-beta-induced neuronal cell death contributes to cognitive decline in Alzheimer’s disease. Citri Reticulatae Semen has diverse beneficial effects on neurodegenerative diseases, including Parkinson’s and Huntington’s diseases, however, the effect of Citri Reticulatae Semen on Alzheimer’s disease remains unelucidated. In the current study, the anti-apoptotic and autophagic roles of Citri Reticulatae Semen extract on amyloid-beta-induced apoptosis in PC12 cells were first investigated. Citri Reticulatae Semen extract protected PC12 cells from amyloid-beta-induced apoptosis by attenuating the Bax/Bcl-2 ratio via activation of autophagy. In addition, Citri Reticulatae Semen extract was confirmed to bind amyloid-beta as revealed by biolayer interferometry in vitro, and suppress amyloid-beta-induced pathology such as paralysis, in a transgenic Caenorhabditis elegans in vivo model. Moreover, genetically defective Caenorhabditis elegans further confirmed that the neuroprotective effect of Citri Reticulatae Semen extract was autophagy-dependent. Most importantly, Citri Reticulatae Semen extract was confirmed to improve cognitive impairment, neuronal injury and amyloid-beta burden in 3×Tg Alzheimer’s disease mice. As revealed by both in vitro and in vivo models, these results suggest that Citri Reticulatae Semen extract is a potential natural therapeutic agent for Alzheimer’s disease via its neuroprotective autophagic effects.
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- 2024
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49. Wireless facial biosensing system for monitoring facial palsy with flexible microneedle electrode arrays
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Wenjianlong Zhou, Zhongyan Wang, Qin Xu, Xiangxiang Liu, Junshi Li, Huaiqiang Yu, Hui Qiao, Lirui Yang, Liangpeng Chen, Yuan Zhang, Zhe Huang, Yuxing Pang, Zhitong Zhang, Jiayan Zhang, Xiudong Guan, Shunchang Ma, Yingjie Ren, Xiaoyi Shi, Linhao Yuan, Deling Li, Dong Huang, Zhihong Li, and Wang Jia
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Computer applications to medicine. Medical informatics ,R858-859.7 - Abstract
Abstract Facial palsy (FP) profoundly influences interpersonal communication and emotional expression, necessitating precise diagnostic and monitoring tools for optimal care. However, current electromyography (EMG) systems are limited by their bulky nature, complex setups, and dependence on skilled technicians. Here we report an innovative biosensing approach that utilizes a PEDOT:PSS-modified flexible microneedle electrode array (P-FMNEA) to overcome the limitations of existing EMG devices. Supple system-level mechanics ensure excellent conformality to the facial curvilinear regions, enabling the detection of targeted muscular ensemble movements for facial paralysis assessment. Moreover, our apparatus adeptly captures each electrical impulse in response to real-time direct nerve stimulation during neurosurgical procedures. The wireless conveyance of EMG signals to medical facilities via a server augments access to patient follow-up evaluation data, fostering prompt treatment suggestions and enabling the access of multiple facial EMG datasets during typical 6-month follow-ups. Furthermore, the device’s soft mechanics alleviate issues of spatial intricacy, diminish pain, and minimize soft tissue hematomas associated with traditional needle electrode positioning. This groundbreaking biosensing strategy has the potential to transform FP management by providing an efficient, user-friendly, and less invasive alternative to the prevailing EMG devices. This pioneering technology enables more informed decision-making in FP-management and therapeutic intervention.
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- 2024
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50. Posttreatment Confounding in Causal Mediation Studies: A Cutting-Edge Problem and a Novel Solution via Sensitivity Analysis
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Hong, Guanglei, Yang, Fan, and Qin, Xu
- Abstract
In causal mediation studies that decompose an average treatment effect into indirect and direct effects, examples of post-treatment confounding are abundant. In the presence of treatment-by-mediator interactions, past research has generally considered it infeasible to adjust for a post-treatment confounder of the mediator-outcome relationship due to incomplete information: for any given individual, a post-treatment confounder is observed under the actual treatment condition while missing under the counterfactual treatment condition. This paper proposes a new sensitivity analysis strategy for handling post-treatment confounding and incorporates it into weighting-based causal mediation analysis. The key is to obtain the conditional distribution of the post-treatment confounder under the counterfactual treatment as a function of not just pretreatment covariates but also its counterpart under the actual treatment. The sensitivity analysis then generates a bound for the natural indirect effect and that for the natural direct effect over a plausible range of the conditional correlation between the post-treatment confounder under the actual and that under the counterfactual conditions. Implemented through either imputation or integration, the strategy is suitable for binary as well as continuous measures of post-treatment confounders. Simulation results demonstrate major strengths and potential limitations of this new solution. A re-analysis of the National Evaluation of Welfare-to-Work Strategies (NEWWS) Riverside data reveals that the initial analytic results are sensitive to omitted post-treatment confounding.
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- 2023
- Full Text
- View/download PDF
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