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Abstract Background With the increasing fragmentation of landscape induced by rapid urbanization, the construction of ecological networks is of great significance to alleviate the degradation of urban habitats and protect natural environments. However, there is considerable uncertainty when constructing ecological networks, especially the different approaches to selecting ecological sources. We used the southern Chinese city of Shenzhen as a study area to construct and optimize ecological networks using a coupling approach. Ecological source areas were extracted using morphological spatial pattern analysis (MSPA) and the landscape index method. Ecological networks were constructed using the minimal cumulative resistance (MCR) model and the gravity model. Stepping stones and ecological fault points were added in corridors to optimize the ecological network. Results Ten core areas with maximum importance patch values were extracted by the landscape index method as ecological source areas according to MSPA, after which corridors between ecological sources were constructed based on the MCR model. The constructed ecological networks were optimized using 35 stepping stones and 17 ecological fault points. The optimized ecological networks included 11 important corridors, 34 general corridors, and seven potential corridors. The results of corridor landscape-type analysis showed that a suitable ecological corridor is 60 to 200 m wide. Conclusions Overall, our results imply that ecological source areas can be identified virtually, and that ecological networks can be significantly optimized by combining MSPA and MCR models. These results provide a methodological reference for constructing ecological networks, and they will be useful for urban planning and biodiversity protection in Shenzhen and other similar regions around the world.