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An Introduction to Quantitative Text Analysis for Linguistics: Reproducible Research Using R is a pragmatic textbook that equips students and researchers with the essential concepts and practical programming skills needed to conduct quantitative text analysis in a reproducible manner. Designed for undergraduate students and those new to the field, this book assumes no prior experience with statistics or programming, making it an accessible resource for anyone embarking on their journey into quantitative text analysis.Through a pedagogical approach which emphasizes intuitive understanding over technical details, readers will gain data literacy by learning to identify, interpret, and evaluate data analysis procedures and results. They will also develop research skills, enabling them to design, implement, and communicate quantitative text analysis projects effectively. The book places a strong emphasis on programming skills, guiding readers through interactive lessons, tutorials, and lab activities using the R programming language and real-world datasets.This practical textbook is enriched with features that facilitate learning, including thought and practical exercises, a companion website that includes programming demonstrations to develop and augment readers'recognition of how programming strategies are implemented, and a GitHub repository that contains both a set of interactive R programming lessons and lab exercises, which guide readers through practical hands-on programming applications. This textbook is an essential companion to any linguist looking to learn how to incorporate quantitative data analysis into their work.The Open Access version of this book, available at http://www.taylorfrancis.com, has been made available under a Creative Commons Attribution-Non Commercial-No Derivatives (CC-BY-NC-ND) 4.0 license.

The past decades have transformed the world of statistical data analysis, with new methods, new types of data, and new computational tools. Modern Statistics with R introduces you to key parts of this modern statistical toolkit. It teaches you: Data wrangling – importing, formatting, reshaping, merging, and filtering data in R. Exploratory data analysis – using visualisations and multivariate techniques to explore datasets. Statistical inference – modern methods for testing hypotheses and computing confidence intervals. Predictive modelling – regression models and machine learning methods for prediction, classification, and forecasting. Simulation – using simulation techniques for sample size computations and evaluations of statistical methods. Ethics in statistics – ethical issues and good statistical practice. R programming – writing code that is fast, readable, and (hopefully!) free from bugs. No prior programming experience is necessary. Clear explanations and examples are provided to accommodate readers at all levels of familiarity with statistical principles and coding practices. A basic understanding of probability theory can enhance comprehension of certain concepts discussed within this book.In addition to plenty of examples, the book includes more than 200 exercises, with fully worked solutions available at: www.modernstatisticswithr.com.

Surveys are powerful tools for gathering information, uncovering insights, and facilitating decision-making. However, to ensure the accurate interpretation of results, they require specific analysis methods. In this book, readers embark on an in-depth journey into conducting complex survey analysis with the {srvyr} package and tidyverse family of functions from the R programming language. Intended for intermediate R users familiar with the basics of the tidyverse, this book gives readers a deeper understanding of applying appropriate survey analysis techniques using {srvyr}, {survey}, and other related packages. With practical walkthroughs featuring real-world datasets, such as the American National Election Studies and Residential Energy Consumption Survey, readers will develop the skills necessary to perform impactful survey analysis on survey data collected through a randomized sample design. Additionally, this book teaches readers how to interpret and communicate results of survey data effectively.Key Features: Uses the {srvyr} package and tidyverse family of packages. Grants a conceptual understanding of the statistical methods that the functions apply to. Includes practical walkthroughs using publicly available survey data. Provides the reader with the tools for interpreting, visualizing, and presenting results.

This book is structured to encompass both the foundational and specialized aspects of quantitative analysis in geography. The basic content covers descriptive statistical analysis and correlation analysis of geographical data, while the professional content delves into more advanced topics like linear regression analysis, geographically weighted regression analysis, time series analysis, cluster analysis, principal component analysis, Markov chain analysis, and geographical network analysis. The methodologies span from widely utilized techniques to more recent developments, and the data primarily originates from reputable sources in China. The example code provided in the book can be executed using R packages available on the CRAN website.This book is an invaluable resource for undergraduate and graduate students, as well as researchers interested in learning and applying R for processing, visualizing, and analyzing geographic data. It serves as an introductory course in quantitative methods in geography for students in geography departments. Additionally, it is an ideal supplementary text for applied methods courses across various disciplines that involve geographic data, such as human and physical geography, geographic information science, ecology, public health, crime, and economics.

This book explores the application of complex variables to econometric modeling. Providing a thorough introduction to the theory of complex numbers, it extends these concepts to develop complex-valued models that enhance the accuracy and depth of economic forecasting and data analysis. From simple to multiple complex linear regression, the monograph discusses model formulation, estimation techniques, and correlation analysis, supported by examples in R. This comprehensive guide is a useful resource for students, researchers, and practitioners aiming to apply advanced mathematical techniques to tackle complex real-life problems, making it a useful tool for enhancing predictive analytics in business, economics, and finance.

An accessible learning resource that develops data analysis skills for natural science students in an efficient style using the R programming language R-ticulate: A Beginner's Guide to Data Analysis for Natural Scientists is a compact, example-based, and user-friendly statistics textbook without unnecessary frills, but instead filled with engaging, relatable examples, practical tips, online exercises, resources, and references to extensions, all on a level that follows contemporary curricula taught in large parts of the world. The content structure is unique in the sense that statistical skills are introduced at the same time as software (programming) skills in R. This is by far the best way of teaching from the authors'experience. Readers of this introductory text will find: Explanations of statistical concepts in simple, easy-to-understand language A variety of approaches to problem solving using both base R and tidyverse Boxes dedicated to specific topics and margin text that summarizes key points A clearly outlined schedule organized into 12 chapters corresponding to the 12 semester weeks of most universities While at its core a traditional printed book, R-ticulate: A Beginner's Guide to Data Analysis for Natural Scientists comes with a wealth of online teaching material, making it an ideal and efficient reference for students who wish to gain a thorough understanding of the subject, as well as for instructors teaching related courses.

Mixture models are a powerful tool for analyzing complex and heterogeneous datasets across many scientific fields, from finance to genomics. Mixture Models: Parametric, Semiparametric, and New Directions provides an up-to-date introduction to these models, their recent developments, and their implementation using R. It fills a gap in the literature by covering not only the basics of finite mixture models, but also recent developments such as semiparametric extensions, robust modeling, label switching, and high-dimensional modeling. Features Comprehensive overview of the methods and applications of mixture models Key topics include hypothesis testing, model selection, estimation methods, and Bayesian approaches Recent developments, such as semiparametric extensions, robust modeling, label switching, and high-dimensional modeling Examples and case studies from such fields as astronomy, biology, genomics, economics, finance, medicine, engineering, and sociology Integrated R code for many of the models, with code and data available in the R Package MixSemiRob Mixture Models: Parametric, Semiparametric, and New Directions is a valuable resource for researchers and postgraduate students from statistics, biostatistics, and other fields. It could be used as a textbook for a course on model-based clustering methods, and as a supplementary text for courses on data mining, semiparametric modeling, and high-dimensional data analysis.

Learn to expertly apply a range of machine learning methods to real data with this practical guide.Packed with real datasets and practical examples, The Art of Machine Learning will help you develop an intuitive understanding of how and why ML methods work, without the need for advanced math.As you work through the book, you'll learn how to implement a range of powerful ML techniques, starting with the k-Nearest Neighbors (k-NN) method and random forests, and moving on to gradient boosting, support vector machines (SVMs), neural networks, and more.With the aid of real datasets, you'll delve into regression models through the use of a bike-sharing dataset, explore decision trees by leveraging New York City taxi data, and dissect parametric methods with baseball player stats. You'll also find expert tips for avoiding common problems, like handling “dirty” or unbalanced data, and how to troubleshoot pitfalls.You'll also explore:How to deal with large datasets and techniques for dimension reductionDetails on how the Bias-Variance Trade-off plays out in specific ML methodsModels based on linear relationships, including ridge and LASSO regressionReal-world image and text classification and how to handle time series dataMachine learning is an art that requires careful tuning and tweaking. With The Art of Machine Learning as your guide, you'll master the underlying principles of ML that will empower you to effectively use these models, rather than simply provide a few stock actions with limited practical use.Requirements: A basic understanding of graphs and charts and familiarity with the R programming language

This book provides a conceptual introduction to regression analysis and machine learning and their applications in education research. It discusses their diverse applications, including its role in predicting future events based on the current data or explaining why some phenomena occur. These identified important predictors provide data-based evidence for educational and psychological decision-making.Offering an applications-oriented approach while mapping out fundamental methodological developments, this book lays a sound foundation for understanding essential regression and machine learning concepts for data analytics. The first part of the book discusses regression analysis and provides a sturdy foundation to understand the logic of machine learning. With each chapter, the discussion and development of each statistical concept and data analytical technique is presented from an applied perspective, with the statistical results providing insights into decisions and solutions to problems using R. Based on practical examples, and written in a concise and accessible style, the book is learner-centric and does a remarkable job in breaking down complex concepts.Regression and Machine Learning for Education Sciences Using R is primarily for students or practitioners in education and psychology, although individuals from other related disciplines can also find the book beneficial. The dataset and examples used in the book are from an educational setting, and students will find that this text provides a good preparation ground for studying more statistical and data analytical materials.

Unlike the first edition, the new edition has been split into two books.Thoroughly revised and updated, this is the first book of the second edition of Introduction to Data Science: Data Wrangling and Visualization with R. It introduces skills that can help you tackle real-world data analysis challenges. These include R programming, data wrangling with dplyr, data visualization with ggplot2, file organization with UNIX/Linux shell, version control with Git and GitHub, and reproducible document preparation with Quarto and knitr. The new edition includes additional material/chapters on data.table, locales, and accessing data through APIs. The book is divided into four parts: R, Data Visualization, Data Wrangling, and Productivity Tools. Each part has several chapters meant to be presented as one lecture and includes dozens of exercises. The second book will cover topics including probability, statistics and prediction algorithms with R.Throughout the book, we use motivating case studies. In each case study, we try to realistically mimic a data scientist's experience. For each of the skills covered, we start by asking specific questions and answer these through data analysis. Examples of the case studies included in the book are: US murder rates by state, self-reported student heights, trends in world health and economics, and the impact of vaccines on infectious disease rates.This book is meant to be a textbook for a first course in Data Science. No previous knowledge of R is necessary, although some experience with programming may be helpful. To be a successful data analyst implementing these skills covered in this book requires understanding advanced statistical concepts, such as those covered the second book. If you read and understand all the chapters and complete all the exercises in this book, and understand statistical concepts, you will be well-positioned to perform basic data analysis tasks and you will be prepared to learn the more advanced concepts and skills needed to become an expert.

The Data Preparation Journey: Finding Your Way With R introduces the principles of data preparation within in a systematic approach that follows a typical data science or statistical workflow. With that context, readers will work through practical solutions to resolving problems in data using the statistical and data science programming language R. These solutions include examples of complex real-world data, adding greater context and exposing the reader to greater technical challenges. This book focuses on the Import to Tidy to Transform steps. It demonstrates how “Visualise” is an important part of Exploratory Data Analysis, a strategy for identifying potential problems with the data prior to cleaning.This book is designed for readers with a working knowledge of data manipulation functions in R or other programming languages. It is suitable for academics for whom analyzing data is crucial, businesses who make decisions based on the insights gleaned from collecting data from customer interactions, and public servants who use data to inform policy and program decisions. The principles and practices described within The Data Preparation Journey apply regardless of the context.Key Features: Includes R package containing the code and data sets used in the book Comprehensive examples of data preparation from a variety of disciplines Defines the key principles of data preparation, from access to publication

Financial Data Analysis with R: Monte-Carlo Validation is a comprehensive exploration of statistical methodologies and their applications in finance. Readers are taken on a journey in each chapter through practical explanations and examples, enabling them to develop a solid foundation of these methods in R and their applications in finance.This book serves as an indispensable resource for finance professionals, analysts, and enthusiasts seeking to harness the power of data-driven decision-making.The book goes beyond just teaching statistical methods in R and incorporates a unique section of informative Monte-Carlo simulations. These Monte-Carlo simulations are uniquely designed to showcase the reader the potential consequences and misleading conclusions that can arise when fundamental model assumptions are violated. Through step-by-step tutorials and realworld cases, readers will learn how and why model assumptions are important to follow.With a focus on practicality, Financial Data Analysis with R: Monte-Carlo Validation equips readers with the skills to construct and validate financial models using R. The Monte-Carlo simulation exercises provide a unique opportunity to understand the methods further, making this book an essential tool for anyone involved in financial analysis, investment strategy, or risk management. Whether you are a seasoned professional or a newcomer to the world of financial analytics, this book serves as a guiding light, empowering you to navigate the landscape of finance with precision and confidence.Key Features: An extensive compilation of commonly used financial data analytics methods from fundamental to advanced levels Learn how to model and analyze financial data with step-by-step illustrations in R and ready-to-use publicly available data Includes Monte-Carlo simulations uniquely designed to showcase the reader the potential consequences and misleading conclusions that arise when fundamental model assumptions are violated Data and computer programs are available for readers to replicate and implement the models and methods themselves

This book is written for statisticians, data analysts, programmers, researchers, professionals, and general consumers on how to perform different types of statistical data analysis for research purposes using R object-oriented programming language and RStudio integrated development environment (IDE). R is an open-source software with a development environment (RStudio) for computing statistics and graphical displays through data manipulation, modeling, and calculation. R packages and supported libraries provide a wide range of functions for programming and analyzing of data. Unlike many of the existing statistical software, R has the added benefit of allowing the users to write more efficient codes by using command-line scripting and vectors. It has several built-in functions and libraries that are extensible and allows the users to define their own (customized) functions on how they expect the program to behave while handling the data, which can also be stored in the simple object system. Therefore, this book serves as both textbook and manual for R statistics particularly in academic research, data analytics, and computer programming targeted to help inform and guide the work of the users. It provides information about different types of statistical data analysis and methods, and the best scenarios for use of each case in R. It gives a hands-on step-by-step practical guide on how to identify and conduct the different parametric and nonparametric procedures. This includes a description of the different conditions or assumptions that are necessary for performing the various statistical methods or tests, and how to understand the results of the methods. The book also covers the different data formats and sources, and how to test for the reliability and validity of the available datasets. Different research experiments, case scenarios, and examples are explained in this book. The book provides a comprehensive description and step-by-step practical hands-on guide to carrying out the different types of statistical analysis in R particularly for research purposes with examples. Ranging from how to import and store datasets in R as objects, how to code and call the methods or functions for manipulating the datasets or objects, factorization, and vectorization, to better reasoning, interpretation, and storage of the results for future use, and graphical visualizations and representations thus congruence of Statistics and Computer programming in Research.

This open access comprehensive methodological book offers a much-needed answer to the lack of resources and methodological guidance in learning analytics, which has been a problem ever since the field started. The book covers all important quantitative topics in education at large as well as the latest in learning analytics and education data mining. The book also goes deeper into advanced methods that are at the forefront of novel methodological innovations. Authors of the book include world-renowned learning analytics researchers, R package developers, and methodological experts from diverse fields offering an unprecedented interdisciplinary reference on novel topics that is hard to find elsewhere.The book starts with the basics of R as a programming language, the basics of data cleaning, data manipulation, statistics, and analytics. In doing so, the book is suitable for newcomers as they can find an easy entry to the field, as well as being comprehensive of all the major methodologies. For every method, the corresponding chapter starts with the basics, explains the main concepts, and reviews examples from the literature. Every chapter has a detailed explanation of the essential techniques and basic functions combined with code and a full tutorial of the analysis with open-access real-life data. A total of 22 chapters are included in the book covering a wide range of methods such as predictive learning analytics, network analysis, temporal networks, epistemic networks, sequence analysis, process mining, factor analysis, structural topic modeling, clustering, longitudinal analysis, and Markov models. What is really unique about the book is that researchers can perform the most advanced analysis with the included code using the step-by-step tutorial and the included data without the need for any extra resources.This is an open access book.

The integration of geology with data science disciplines, such as spatial statistics, remote sensing, and geographic information systems (GIS), has given rise to a shift in many natural sciences schools, pushing the boundaries of knowledge and enabling new discoveries in geological processes and earth systems. Spatial analysis of geological data can be used to identify patterns and trends in data, to map spatial relationships, and to model spatial processes. R is a consolidated and yet growing statistical programming language with increasing value in spatial analysis often replacing, with advantage, GIS tools. By providing a comprehensive guide for geologists to harness the power of spatial analysis in R, Spatial Analysis in Geology Using R serves as a tool in addressing real-world problems, such as natural resource management, environmental conservation, and hazard prediction and mitigation.Features: Provides a practical and accessible overview of spatial analysis in geology using R Organised in three independent and complementary parts: Introduction to R, Spatial Analysis with R, and Spatial Statistics and Modelling Applied approach with many detailed examples and case studies using real geological data Presents a collection of R packages that are useful in many geological situations Does not assume any prior knowledge of R; all code are explained in detail Supplemented by a website with all data, code, and examples Spatial Analysis in Geology Using R will be useful to any geological researcher who has acquired basic spatial analysis skills, often using GIS, and is interested in deepening those skills through the use of R. It could be used as a reference by applied researchers and analysts in public, private, or third-sector industries. It could also be used to teach a course on the topic to graduate students or for self-study.

Exploring Operations Research with R shows how the R programming language can be a valuable tool – and way of thinking – which can be successfully applied to the field of operations research (OR). This approach is centred on the idea of the future OR professional as someone who can combine knowledge of key OR techniques (e.g., simulation, linear programming, data science, and network science) with an understanding of R, including tools for data representation, manipulation, and analysis. The core aim of the book is to provide a self-contained introduction to R (both Base R and the tidyverse) and show how this knowledge can be applied to a range of OR challenges in the domains of public health, infectious disease, and energy generation, and thus provide a platform to develop actionable insights to support decision making.Features Can serve as a primary textbook for a comprehensive course in R, with applications in OR Suitable for post-graduate students in OR and data science, with a focus on the computational perspective of OR The text will also be of interest to professional OR practitioners as part of their continuing professional development Linked to a Github repository including code, solutions, data sets, and other ancillary material

Many applied researchers equate spatial statistics with prediction or mapping, but this book naturally extends linear models, which includes regression and ANOVA as pillars of applied statistics, to achieve a more comprehensive treatment of the analysis of spatially autocorrelated data. Spatial Linear Models for Environmental Data, aimed at students and professionals with a master's level training in statistics, presents a unique, applied, and thorough treatment of spatial linear models within a statistics framework. Two subfields, one called geostatistics and the other called areal or lattice models, are extensively covered. Zimmerman and Ver Hoef present topics clearly, using many examples and simulation studies to illustrate ideas. By mimicking their examples and R code, readers will be able to fit spatial linear models to their data and draw proper scientific conclusions. Topics covered include: Exploratory methods for spatial data including outlier detection, (semi)variograms, Moran's I, and Geary's c. Ordinary and generalized least squares regression methods and their application to spatial data. Suitable parametric models for the mean and covariance structure of geostatistical and areal data. Model-fitting, including inference methods for explanatory variables and likelihood-based methods for covariance parameters. Practical use of spatial linear models including prediction (kriging), spatial sampling, and spatial design of experiments for solving real world problems. All concepts are introduced in a natural order and illustrated throughout the book using four datasets. All analyses, tables, and figures are completely reproducible using open-source R code provided at a GitHub site. Exercises are given at the end of each chapter, with full solutions provided on an instructor's FTP site supplied by the publisher.

mlr3 is an award-winning ecosystem of R packages that have been developed to enable state-of-the-art machine learning capabilities in R. Applied Machine Learning Using mlr3 in R gives an overview of flexible and robust machine learning methods, with an emphasis on how to implement them using mlr3 in R. It covers various key topics, including basic machine learning tasks, such as building and evaluating a predictive model; hyperparameter tuning of machine learning approaches to obtain peak performance; building machine learning pipelines that perform complex operations such as pre-processing followed by modelling followed by aggregation of predictions; and extending the mlr3 ecosystem with custom learners, measures, or pipeline components.Features: In-depth coverage of the mlr3 ecosystem for users and developers Explanation and illustration of basic and advanced machine learning concepts Ready to use code samples that can be adapted by the user for their application Convenient and expressive machine learning pipelining enabling advanced modelling Coverage of topics that are often ignored in other machine learning books The book is primarily aimed at researchers, practitioners, and graduate students who use machine learning or who are interested in using it. It can be used as a textbook for an introductory or advanced machine learning class that uses R, as a reference for people who work with machine learning methods, and in industry for exploratory experiments in machine learning.

Generalized Kernel Equating is a comprehensive guide for statisticians, psychometricians, and educational researchers aiming to master test score equating. This book introduces the Generalized Kernel Equating (GKE) framework, providing the necessary tools and methodologies for accurate and fair score comparisons.The book presents test score equating as a statistical problem and covers all commonly used data collection designs. It details the five steps of the GKE framework: presmoothing, estimating score probabilities, continuization, equating transformation, and evaluating the equating transformation. Various presmoothing strategies are explored, including log-linear models, item response theory models, beta4 models, and discrete kernel estimators. The estimation of score probabilities when using IRT models is described and Gaussian kernel continuization is extended to other kernels such as uniform, logistic, epanechnikov and adaptive kernels. Several bandwidth selection methods are described. The kernel equating transformation and variants of it are defined, and both equating-specific and statistical measures for evaluating equating transformations are included. Real data examples, guiding readers through the GKE steps with detailed R code and explanations are provided. Readers are equipped with an advanced knowledge and practical skills for implementing test score equating methods.

Do you want to gain a deeper understanding of how big tech analyses and exploits our text data, or investigate how political parties differ by analysing textual styles, associations and trends in documents? Or create a map of a text collection and write a simple QA system yourself?This book explores how to apply state-of-the-art text analytics methods to detect and visualise phenomena in text data. Solidly based on methods from corpus linguistics, natural language processing, text analytics and digital humanities, this book shows readers how to conduct experiments with their own corpora and research questions, underpin their theories, quantify the differences and pinpoint characteristics. Case studies and experiments are detailed in every chapter using real-world and open access corpora from politics, World English, history, and literature. The results are interpreted and put into perspective, pitfalls are pointed out, and necessary pre-processing steps are demonstrated. This book also demonstrates how to use the programming language R, as well as simple alternatives and additions to R, to conduct experiments and employ visualisations by example, with extensible R-code, recipes, links to corpora, and a wide range of methods. The methods introducedcan be used across texts of all disciplines, from history or literature to party manifestos and patient reports.

Emerging technologies generate data sets of increased size and complexity that require new or updated statistical inferential methods and scalable, reproducible software. These data sets often involve measurements of a continuous underlying process, and benefit from a functional data perspective. Functional Data Analysis with R presents many ideas for handling functional data including dimension reduction techniques, smoothing, functional regression, structured decompositions of curves, and clustering. The idea is for the reader to be able to immediately reproduce the results in the book, implement these methods, and potentially design new methods and software that may be inspired by these approaches.Features: Functional regression models receive a modern treatment that allows extensions to many practical scenarios and development of state-of-the-art software. The connection between functional regression, penalized smoothing, and mixed effects models is used as the cornerstone for inference. Multilevel, longitudinal, and structured functional data are discussed with emphasis on emerging functional data structures. Methods for clustering functional data before and after smoothing are discussed. Multiple new functional data sets with dense and sparse sampling designs from various application areas are presented, including the NHANES linked accelerometry and mortality data, COVID-19 mortality data, CD4 counts data, and the CONTENT child growth study. Step-by-step software implementations are included, along with a supplementary website (www.FunctionalDataAnalysis.com) featuring software, data, and tutorials. More than 100 plots for visualization of functional data are presented. Functional Data Analysis with R is primarily aimed at undergraduate, master's, and PhD students, as well as data scientists and researchers working on functional data analysis. The book can be read at different levels and combines state-of-the-art software, methods, and inference. It can be used for self-learning, teaching, and research, and will particularly appeal to anyone who is interested in practical methods for hands-on, problem-forward functional data analysis. The reader should have some basic coding experience, but expertise in R is not required.

A hands-on lab guide in the R programming language that enables students in the life sciences to reason quantitatively about living systems across scalesThis lab guide accompanies the textbook Quantitative Biosciences, providing students with the skills they need to translate biological principles and mathematical concepts into computational models of living systems. This hands-on guide uses a case study approach organized around central questions in the life sciences, introducing landmark advances in the field while teaching students—whether from the life sciences, physics, computational sciences, engineering, or mathematics—how to reason quantitatively in the face of uncertainty.Draws on real-world case studies in molecular and cellular biosciences, organismal behavior and physiology, and populations and ecological communitiesEncourages good coding practices, clear and understandable modeling, and accessible presentation of resultsHelps students to develop a diverse repertoire of simulation approaches, enabling them to model at the appropriate scaleBuilds practical expertise in a range of methods, including sampling from probability distributions, stochastic branching processes, continuous time modeling, Markov chains, bifurcation analysis, partial differential equations, and agent-based simulationsBridges the gap between the classroom and research discovery, helping students to think independently, troubleshoot and resolve problems, and embark on research of their ownStand-alone computational lab guides for Quantitative Biosciences also available in Python and MATLAB

Delve into the realm of statistical methodology for mediation analysis with a Bayesian perspective in high dimensional data through this comprehensive guide. Focused on various forms of time-to-event data methodologies, this book helps readers master the application of Bayesian mediation analysis using R. Across ten chapters, this book explores concepts of mediation analysis, survival analysis, accelerated failure time modeling, longitudinal data analysis, and competing risk modeling. Each chapter progressively unravels intricate topics, from the foundations of Bayesian approaches to advanced techniques like variable selection, bivariate survival models, and Dirichlet process priors. With practical examples and step-by-step guidance, this book empowers readers to navigate the intricate landscape of high-dimensional data analysis, fostering a deep understanding of its applications and significance in diverse fields.

Learning a computer language like R can be either frustrating, fun or boring. Having fun requires challenges that wake up the learner's curiosity but also provide an emotional reward for overcoming them. The book is designed so that it includes smaller and bigger challenges, in what I call playgrounds, in the hope that all readers will enjoy their path to R fluency. Fluency in the use of a language is a skill that is acquired through practice and exploration. For students and professionals in the biological sciences, humanities and many applied fields, recognizing the parallels between R and natural languages should help them feel at home with R. The approach I use is similar to that of a travel guide, encouraging exploration and describing the available alternatives and how to reach them. The intention is to guide the reader through the R landscape of 2024 and beyond.What is new in the second edition? Text expanded by more than 25% to include additional R features and gentler and more detailed explanations Contains 24 new diagrams and flowcharts, seven new tables, and revised text and code examples for clarity All three indexes were expanded, and answers to 28 frequently asked questions added What will you find in this book? Programming concepts explained as they apply to current R Emphasis on the role of abstractions in programming Few prescriptive rules—mostly the author's preferences together with alternatives Presentation of the R language emphasizing the “R way of doing things” Tutoring for “programming in the small” using scripts for data analysis Explanation of the differences between R proper and extensions for data wrangling The grammar of graphics is described as a language for the construction of data visualisations Examples of data exchange between R and the foreign world using common file formats Coaching to become an independent R user, capable of writing original scripts and solving future challenges

Modern Data Visualization with R describes the many ways that raw and summary data can be turned into visualizations that convey meaningful insights. It starts with basic graphs such as bar charts, scatter plots, and line charts, but progresses to less well-known visualizations such as tree maps, alluvial plots, radar charts, mosaic plots, effects plots, correlation plots, biplots, and the mapping of geographic data. Both static and interactive graphics are described and the use of color, shape, shading, grouping, annotation, and animations are covered in detail. The book moves from a default look and feel for graphs, to graphs with customized colors, fonts, legends, annotations, and organizational themes.Features Contains a wide breadth of graph types including newer and less well-known approaches Connects each graph type to the characteristics of the data and the goals of the analysis Moves the reader from simple graphs describing one variable to building visualizations that describe complex relationships among many variables Provides newer approaches to creating interactive web graphics via JavaScript libraries Details how to customize each graph type to meet users'needs and those of their audiences Gives methods for creating visualizations that are publication ready for print (in color or black and white) and the web Suggests best practices Offers examples from a wide variety of fields The book is written for those new to data analysis as well as the seasoned data scientist. It can be used for both teaching and research, and will particularly appeal to anyone who needs to describe data visually and wants to find and emulate the most appropriate method quickly. The reader should have some basic coding experience, but expertise in R is not required. Some of the later chapters (e.g., visualizing statistical models) assume exposure to statistical inference at the level of analysis of variance and regression.

Ecological dynamics are tremendously complicated and are studied at a variety of spatial and temporal scales. Ecologists often simplify analysis by describing changes in density of individuals across a landscape, and statistical methods are advancing rapidly for studying spatio-temporal dynamics. However, spatio-temporal statistics is often presented using a set of principles that may seem very distant from ecological theory or practice. This book seeks to introduce a minimal set of principles and numerical techniques for spatio-temporal statistics that can be used to implement a wide range of real-world ecological analyses regarding animal movement, population dynamics, community composition, causal attribution, and spatial dynamics. We provide a step-by-step illustration of techniques that combine core spatial-analysis packages in R with low-level computation using Template Model Builder. Techniques are showcased using real-world data from varied ecological systems, providing a toolset for hierarchical modelling of spatio-temporal processes. Spatio-Temporal Models for Ecologists is meant for graduate level students, alongside applied and academic ecologists.Key Features: Foundational ecological principles and analyses Thoughtful and thorough ecological examples Analyses conducted using a minimal toolbox and fast computation Code using R and TMB included in the book and available online

Learn statistics by analyzing professional basketball data! In this action-packed book, you'll build your skills in exploratory data analysis by digging into the fascinating world of NBA games and player stats using the R language.Statistics Slam Dunk is an engaging how-to guide for statistical analysis with R. Each chapter contains an end-to-end data science or statistics project delving into NBA data and revealing real-world sporting insights. Written by a former basketball player turned business intelligence and analytics leader, you'll get practical experience tidying, wrangling, exploring, testing, modeling, and otherwise analyzing data with the best and latest R packages and functions. In Statistics Slam Dunk you'll develop a toolbox of R programming skills including: Reading and writing data Installing and loading packages Transforming, tidying, and wrangling data Applying best-in-class exploratory data analysis techniques Creating compelling visualizations Developing supervised and unsupervised machine learning algorithms Executing hypothesis tests, including t-tests and chi-square tests for independence Computing expected values, Gini coefficients, z-scores, and other measures If you're looking to switch to R from another language, or trade base R for tidyverse functions, this book is the perfect training coach. Much more than a beginner's guide, it teaches statistics and data science methods that have tons of use cases. And just like in the real world, you'll get no clean pre-packaged data sets in Statistics Slam Dunk. You'll take on the challenge of wrangling messy data to drill on the skills that will make you the star player on any data team. Foreword by Thomas W. Miller. About the technology Statistics Slam Dunk is a data science manual with a difference. Each chapter is a complete, self-contained statistics or data science project for you to work through—from importing data, to wrangling it, testing it, visualizing it, and modeling it. Throughout the book, you'll work exclusively with NBA data sets and the R language, applying best-in-class statistics techniques to reveal fun and fascinating truths about the NBA. About the book Is losing basketball games on purpose a rational strategy? Which hustle statistics have an impact on wins and losses? Does spending more on player salaries translate into a winning record? You'll answer all these questions and more. Plus, R's visualization capabilities shine through in the book's 300 plots and charts, including Pareto charts, Sankey diagrams, Cleveland dot plots, and dendrograms. About the reader For readers who know basic statistics. No advanced knowledge of R—or basketball—required. About the author Gary Sutton is a former basketball player who has built and led high-performing business intelligence and analytics organizations across multiple verticals. Table of Contents 1 Getting started 2 Exploring data 3 Segmentation analysis 4 Constrained optimization 5 Regression models 6 More wrangling and visualizing data 7 T-testing and effect size testing 8 Optimal stopping 9 Chi-square testing and more effect size testing 10 Doing more with ggplot2 11 K-means clustering 12 Computing and plotting inequality 13 More with Gini coefficients and Lorenz curves 14 Intermediate and advanced modeling 15 The Lindy effect 16 Randomness versus causality 17 Collective intelligence