14 results on '"R. R. Sharipov"'
Search Results
2. pH Changes in the Mitochondrial Matrix and Cytosol under Glutamate Deregulation of Ca2+ Homeostasis in Cultured Rat Hippocampal Neurons
- Author
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A. M. Surin, L. R. Gorbacheva, I. G. Savinkova, R. R. Sharipov, and V. G. Pinelis
- Subjects
Biophysics ,Cell Biology ,Biochemistry - Published
- 2022
- Full Text
- View/download PDF
3. IPSC-Derived Human Neurons with GCaMP6s Expression Allow In Vitro Study of Neurophysiological Responses to Neurochemicals
- Author
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R R Sharipov, A. P. Fisenko, A A Galiakberova, E. B. Dashinimaev, D A Dorovskoy, A. M. Surin, Dongxing Zhang, K M Shakirova, and Z. V. Bakaeva
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Neurons ,Transgene ,Induced Pluripotent Stem Cells ,Glutamate receptor ,Glutamic Acid ,Cell Differentiation ,General Medicine ,Biology ,Neurophysiology ,Biochemistry ,In vitro ,Cellular and Molecular Neuroscience ,Fluorescence microscope ,Humans ,Calcium ,Stem cell ,Receptor ,Neuroscience ,Ionotropic effect - Abstract
The study of human neurons and their interaction with neurochemicals is difficult due to the inability to collect primary biomaterial. However, recent advances in the cultivation of human stem cells, methods for their neuronal differentiation and chimeric fluorescent calcium indicators have allowed the creation of model systems in vitro. In this paper we report on the development of a method to obtain human neurons with the GCaMP6s calcium indicator, based on a human iPSC line with the TetON–NGN2 transgene complex. The protocol we developed allows us quickly, conveniently and efficiently obtain significant amounts of human neurons suitable for the study of various neurochemicals and their effects on specific neurophysiological activity, which can be easily registered using fluorescence microscopy. In the neurons we obtained, glutamate (Glu) induces rises in [Ca2+]i which are caused by ionotropic receptors for Glu, predominantly of the NMDA-type. Taken together, these facts allow us to consider the model we have created to be a useful and successful development of this technology.
- Published
- 2021
4. ON THE EFFICIENCY OF FUZZY LOGIC APPLICATIONS IN HYDRAULIC ACTUATOR CONTROL SYSTEMS
- Author
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A. V. Mesropyan and R. R. Sharipov
- Subjects
Hydraulic cylinder ,Control theory ,Computer science ,law ,Control system ,PID controller ,Electro-hydraulic actuator ,Actuator ,Fuzzy logic ,Membership function ,law.invention - Abstract
The paper considers the possibility to apply intelligent controllers as setting devices and adjusters of hydraulic actuators of different purpose. The authors proposed a method of positioning control of a hydraulic steering actuator based on a fuzzy logic controller (FLC). FLC corrective action is implemented based on three input parameters similar to the traditional proportional-integral-derivative controller. To evaluate the efficiency of FLC application in the system of hydraulic actuator positioning, the authors developed a mathematical model describing the work of a complex electro-hydromechanical system including electromechanical converter, fluidic hydraulic actuator, and hydraulic cylinder actuator. Non-linear mathematical model of an electro-hydraulic servo is implemented in MatLab Simulink software; the proportional-integral-derivative FLC was formed using the Fuzzy Logic Toolbox means. The authors set the FLC parameters using the linguistic rule-based expert system and the change in the membership function form, varying which it is possible to get linear and non-linear output characteristics. The obtained piecewise-linear hyperplane of FLC controlling characteristic determining the non-linear nature of correction theoretically allows getting the improved quality of transient processes. Using the numerical experience method, the authors assessed the efficiency of control algorithms with traditional controllers and the equivalent fuzzy controllers within the known mathematical model of a control object (electro-hydraulic follower actuator). When synthesizing the proportional-type FLC, the authors formed the nonlinear control law which allowed compensating the nonlinearity of the hydraulic actuator system. When implementing the linear dependence of the proportional-integral FLC, the system demonstrates the behavior attributable to the traditional controller. Generated FLC with nonlinear characteristics did not show significant quality improvement of the transient process compared to the traditional controller. Based on the received results, the authors concluded the reasonability of FLC application within the control systems with hydraulic actuating elements.
- Published
- 2019
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5. Improving the methodological approach to identifying financial risks in the context of macroeconomic instability of the economy
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O. I., Khamzina, S. A., Meshkov, I. I., Saenko, R. R., Sharipov, A.S., Tretyak, and N.G., Bochkareva
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financial sector ,commercial organization ,financial risk ,inflation ,margin ,costs - Abstract
The relevance of the research topic is due to the fact that any area of commercial activity is subject to different types of financial risks, which humanity had to observe in difficult epidemiological conditions associated with the spread of coronavirus infection. The lightning-fast spread of Covid-19 around the world led to significant volatility in the stock market, which in a short time collapsed to the level of twenty years ago. It follows that the study of financial risks is the most relevant topic in modern times.
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- 2021
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- View/download PDF
6. Study of the Mechanism of the Neuron Sensitization to the Repeated Glutamate Challenge
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Pinelis Vg, A. M. Surin, R. R. Sharipov, L. R. Gorbacheva, and I. A. Krasilnikova
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0301 basic medicine ,Membrane potential ,Chemistry ,Biophysics ,Glutamate receptor ,Depolarization ,Cell Biology ,Mitochondrion ,Biochemistry ,Cell biology ,03 medical and health sciences ,030104 developmental biology ,0302 clinical medicine ,medicine.anatomical_structure ,Mitochondrial permeability transition pore ,medicine ,Neuron ,Inner mitochondrial membrane ,030217 neurology & neurosurgery ,Sensitization - Abstract
Exposure of cultured neurons to high concentrations of Glu leads to a strong depolarization of mitochondria, which develops synchronously with the secondary rise in the intracellular Ca2+ concentration (delayed calcium deregulation, DCD). In this study, using the primary culture of rat cerebellar neurons, we investigated the mechanism of neuronal sensitization, which manifests itself in the reduction of latent periods of DCD during repeated exposures to Glu. It was shown that the most likely cause of sensitization is the inability of mitochondria to maintain a high transmembrane potential (ΔΨm) as a result of an increase in the proton conductivity of the internal mitochondrial membrane, but not the opening of the mitochondrial permeability transition pore in the inner mitochondrial membrane. Mitochondrial dysfunction reduces the production of ATP, leading to the inability of neurons to quickly restore the concentration of Na+, ATP, and NADH in the intervals between successive Glu administrations. One of the reasons that aggravate the dysfunction of mitochondria and contribute to the sensitization of neurons to the repeated action of Glu is Ca2+ accumulated in the mitochondria during the first glutamate impact.
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- 2018
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7. Disruption of Functional Activity of Mitochondria during MTT Assay of Viability of Cultured Neurons
- Author
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D P Boyarkin, R. R. Sharipov, L. R. Gorbacheva, A. M. Surin, Pinelis Vg, A. V. Avetisyan, O. Yu. Lisina, and I. A. Krasilnikova
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0301 basic medicine ,Cell Survival ,Pyruvate transport ,Respiratory chain ,Tetrazolium Salts ,Biology ,Mitochondrion ,Biochemistry ,Rhodamine 123 ,Mitochondrial Proteins ,03 medical and health sciences ,chemistry.chemical_compound ,Electron Transport Complex III ,Cerebellum ,Neurites ,Animals ,MTT assay ,Viability assay ,Rats, Wistar ,Cells, Cultured ,Membrane Potential, Mitochondrial ,Electron Transport Complex I ,General Medicine ,Mitochondria ,Rats ,Cytosol ,Thiazoles ,030104 developmental biology ,chemistry ,Formazan - Abstract
The MTT assay based on the reduction of 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium in the cell cytoplasm to a strongly light absorbing formazan is among the most commonly used methods for determination of cell viability and activity of NAD-dependent oxidoreductases. In the present study, the effects of MTT (0.1 mg/ml) on mitochondrial potential (ΔΨm), intracellular NADH, and respiration of cultured rat cerebellum neurons and isolated rat liver mitochondria were investigated. MTT caused rapid quenching of NADH autofluorescence, fluorescence of MitoTracker Green (MTG) and ΔΨm-sensitive probes Rh123 (rhodamine 123) and TMRM (tetramethylrhodamine methyl ester). The Rh123 signal, unlike that of NADH, MTG, and TMRM, increased in the nucleoplasm after 5-10 min, and this was accompanied by the formation of opaque aggregates of formazan in the cytoplasm and neurites. Increase in the Rh123 signal indicated diffusion of the probe from mitochondria to cytosol and nucleus due to ΔΨm decrease. Inhibition of complex I of the respiratory chain decreased the rate of formazan formation, while inhibition of complex IV increased it. Inhibition of complex III and ATP-synthase affected only insignificantly the rate of formazan formation. Inhibition of glycolysis by 2-deoxy-D-glucose blocked the MTT reduction, whereas pyruvate increased the rate of formazan formation in a concentration-dependent manner. MTT reduced the rate of oxygen consumption by cultured neurons to the value observed when respiratory chain complexes I and III were simultaneously blocked, and it suppressed respiration of isolated mitochondria if substrates oxidized by NAD-dependent dehydrogenases were used. These results demonstrate that formazan formation in cultured rat cerebellum neurons occurs primarily in mitochondria. The initial rate of formazan formation may serve as an indicator of complex I activity and pyruvate transport rate.
- Published
- 2017
8. On parachutes of optimum shape in a subsonic gas flow
- Author
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A. M. Elizarov, D. V. Maklakov, and R. R. Sharipov
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Drag coefficient ,Basis (linear algebra) ,Applied Mathematics ,media_common.quotation_subject ,Mechanics ,Infinity ,Physics::Fluid Dynamics ,symbols.namesake ,Classical mechanics ,Flow (mathematics) ,Mach number ,Bluff ,Drag ,Compressibility ,symbols ,media_common ,Mathematics - Abstract
In this paper the problem of finding the impermeable parachute of optimum shape in a subsonic gas flow has been solved. The effects of compressibility have been taken into account out by making use of ideas of Chaplygin's approximate method. A formula for the drag coefficient has been deduced and by comparison with exact solutions it has been demonstrated that for bluff bodies its related error is no more than 0.5% for any Mach number at infinity less than unity. On the basis of the formula a functional for the drag force has been constructed and its global maximum has been found analytically. It has been shown that the optimum shape is slightly affected by compressibility.
- Published
- 2007
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9. [Induction of nitrosative stress in mitochondria of rats hearts in experimental ischemia-reperfusion of the brain and its correction by ecdysterone]
- Author
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R R, Sharipov, A V, Kotsiuruba, B S, Kop\\'iak, and V F, Sahach
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Arginase ,Plant Extracts ,Gene Expression ,Nitric Oxide Synthase Type II ,Asteraceae ,Arginine ,Nitric Oxide ,Antioxidants ,Mitochondria, Heart ,Brain Ischemia ,Rats ,Oxidative Stress ,Ecdysterone ,Peroxynitrous Acid ,Reperfusion Injury ,Animals ,Rats, Wistar ,Oxidation-Reduction - Abstract
On the model of focal ischemia-reperfusion of the brain investigated the induction of nitrosative stress in mitochondria of rats hearts and possible mechanisms of protective action of ecdysterone. It is shown that focal ischemia-reperfusion of the brain induced in myocardial mitochondria the activation of constitutive and inducible de novo synthesis of NO by oxidation of L-arginine and not oxidative synthesis of NO through the recovery of oxidized stable metabolites of NO. Strong evidence of induction of nitrosative stress in heart mitochondria by focal ischemia-reperfusion of the brain, was a significant increase in mitochondrial pool of nitrate- and nitrite-anions and pools of nitrosothiols, that is proof of the formation and decay of peroxynitrite--a key marker of nitrosative stress. Also was observed increase in heart mitochondria by focal ischemia-reperfusion of the brain, content key regulator of de novo synthesis of NO-hydrogen sulfide and activity of inducible arginase II and, as a result, the pool of carbamide, which is also a regulator of the synthesis of NO. Previous introduction for animals herbal extract Serratsula coronata, enriched ecdysterone, reduces induction nitrosative stress in mitochondria of rats hearts under conditions of focal ischemia-reperfusion of the brain.
- Published
- 2015
10. [Induction of oxidative stress in heart mitochondria in brain focal ischemia-reperfusion and protective effect of ecdysterone]
- Author
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R R, Sharipov, A V, Kotsiuruba, B S, Kop\\'iak, and V F, Sahach
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Xanthine Oxidase ,Cardiotonic Agents ,Invertebrate Hormones ,Hydroxyl Radical ,Lipoxygenase ,Heart ,Hydrogen Peroxide ,Survival Analysis ,Mitochondria, Heart ,Brain Ischemia ,Rats ,Oxidative Stress ,Ecdysterone ,Prostaglandin-Endoperoxide Synthases ,Superoxides ,Malondialdehyde ,Reperfusion Injury ,Animals ,Lipid Peroxidation ,Rats, Wistar - Abstract
Based on the fact that the acute phase of ischemic stroke is accompanied by the development of heart damage, manifestations of which are oxidative stress, morphological changes in the myocardium, in the model of brain focal ischemia-reperfusion, we investigated the oxidative stress in rat heart mitochondria and possible mechanisms of cardioprotective effect of ecdysterone. Under the conditions of brain focal ischemia-reperfusion, there is an increase rate of the generation of reactive oxygen species: superoxide (*O2-) and hydroxyl radicals (*OH), pools of stable hydrogen peroxide (H2O2), accumulate products of lipid peroxidation (diene conjugates and malonic dialdehyde), as a result of activation xanthine oxidase (marker uric acid), lipooxygenase (marker leukotriene C4) and cyclooxygenase (marker tromboksane B2) ways of *O2-(generating). In animals that received ecdysterone for 18 days, under conditions of brain focal ischemia-reperfusion, the rate of reactive oxygen species generation and the pools of lipid peroxidation products were decreased, and the survival of animals was increased. The obtained results support the development of oxidative stress in heart mitochondria of rats, powerful antiradical properties ofecdysterone, its cardioprotective effect, in conditions of brain focal ischemia-reperfusion.
- Published
- 2014
11. Study on ATP concentration changes in cytosol of individual cultured neurons during glutamate-induced deregulation of calcium homeostasis
- Author
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Pinelis Vg, I. G. Savinkova, R. R. Sharipov, B. I. Khodorov, A. M. Surin, and L. R. Gorbacheva
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chemistry.chemical_element ,Glutamic Acid ,Biology ,Calcium ,Mitochondrion ,Biochemistry ,Ouabain ,Adenosine Triphosphate ,Cytosol ,medicine ,Animals ,Homeostasis ,Cells, Cultured ,Calcium metabolism ,Membrane potential ,Membrane Potential, Mitochondrial ,Neurons ,Glutamate receptor ,General Medicine ,Hydrogen-Ion Concentration ,Rats ,chemistry ,Biophysics ,Intracellular ,medicine.drug - Abstract
For the first time, simultaneous monitoring of changes in the concentration of cytosolic ATP ([ATP]c), pH (pHc), and intracellular free Ca2+ concentration ([Ca2+]i) of the individual neurons challenged with toxic glutamate (Glu) concentrations was performed. To this end, the ATP-sensor AT1.03, which binds to ATP and therefore enhances the efficiency of resonance energy transfer between blue fluorescent protein (energy donor) and yellow-green fluorescent protein (energy acceptor), was expressed in cultured hippocampal neurons isolated from 1–2-day-old rat pups. Excitation of fluorescence in the acceptor protein allowed monitoring changes in pHc. Cells were loaded with fluorescent low-affinity Ca2+ indicators Fura-FF or X-rhod-FF to register [Ca2+]i. It was shown that Glu (20 μM, glycine 10 μM, Mg2+-free) produced a rapid acidification of the cytosol and decrease in [ATP]c. An approximately linear relationship (r 2 = 0.56) between the rate of [ATP]c decline and latency of glutamate-induced delayed calcium deregulation (DCD) was observed: higher rate of [ATP]c decrease corresponded to shorter DCD latency period. DCD began with a decrease in [ATP]c of as much as 15.9%. In the phase of high [Ca2+]i, the plateau of [ATP]c dropped to 10.4% compared to [ATP]c in resting neurons (100%). In the presence of the Na+/K+-ATPase inhibitor ouabain (0.5 mM), glutamate-induced reduction in [ATP]c in the phase of the high [Ca2+]i plateau was only 36.6%. Changes in [ATP]c, [Ca2+]i, mitochondrial potential, and pHc in calcium-free or sodium-free buffers, as well as in the presence of the inhibitor of Na+/K+-ATPase ouabain, led us to suggest that in addition to increase in proton conductivity and decline in [ATP]c, one of the triggering factors of DCD might be a reversion of the neuronal plasma membrane Na+/Ca2+ exchange.
- Published
- 2014
12. On parachutes of optimum shape in a subsonic gas flow.
- Author
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D. V. MAKLAKOV, A. M. ELIZAROV, and R. R. SHARIPOV
- Subjects
GAS flow ,GAS dynamics ,PARACHUTES ,HYDROSTATICS ,APPROXIMATION theory - Abstract
In this paper the problem of finding the impermeable parachute of optimum shape in a subsonic gas flow has been solved. The effects of compressibility have been taken into account out by making use of ideas of Chaplygin's approximate method. A formula for the drag coefficient has been deduced and by comparison with exact solutions it has been demonstrated that for bluff bodies its related error is no more than 0.5% for any Mach number at infinity less than unity. On the basis of the formula a functional for the drag force has been constructed and its global maximum has been found analytically. It has been shown that the optimum shape is slightly affected by compressibility. [ABSTRACT FROM AUTHOR]
- Published
- 2007
- Full Text
- View/download PDF
13. Breeding and productive qualities of ducks of the local population in northern Kazakhstan.
- Author
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Saginbayeva M, Temirbekova G, Nametov A, Sharipov R, and Aryn B
- Subjects
- Animals, Kazakhstan, Industry, Ducks, Meat
- Abstract
The production of duck meat in the republic was previously based on the use of 4-5 lines and populations of the Beijing breed, where the Medeo cross lines (M-1 paternal and M2-maternal) were the most widespread. At the same time, many domestic lines and populations, such as the cross "Bishkulskaya Tsvetnaya", "Kyzylzharsky", whose livestock is concentrated in the Northern region, represent rich genetic material and can be used to create new crosses. This article describes the productive and breeding qualities of ducks of the local population in the Northern region of Kazakhstan, the data obtained make it possible for further purposeful breeding work to create, preserve highly productive poultry, providing highly efficient production of eggs and meat, adapted to both industrial conditions and conditions of keeping in small-scale and farms. On the basis of "Bishkul Poultry Farm" LLP, we obtained results on the assessment of productive and breeding indicators of ducks of the local population.
- Published
- 2023
- Full Text
- View/download PDF
14. Prediction of protein-DNA interactions of transcription factors linking proteomics and transcriptomics data.
- Author
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Kondrakhin Y, Valeev T, Sharipov R, Yevshin I, Kolpakov F, and Kel A
- Abstract
We compared positional weight matrix-based prediction methods for transcription factor (TF) binding sites using selected fraction of ChIP-seq data with the help of partial AUC measure (limited to false positive rate 0.1, that is the most relevant for the application of the TF search in the genome scale). Comparison of three prediction methods-additive, multiplicative and information-vector based (MATCH) showed an advantage of the MATCH method for majority of transcription factors tested. We demonstrated that application of TF site identifying methods can help to connect the proteomics and phosphoproteomics world of signaling networks to gene regulation and transcriptomics world.
- Published
- 2016
- Full Text
- View/download PDF
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