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Separation and reuse of the catalytically active metal complexes are persistent issues in homogeneous catalysis. Supported Ionic Liquid Phase (SILP) catalysts, where the catalytic center is dissolved in a thin film of a stable ionic liquid, deposited on a solid support, present a promising alternative. However, the dissolution of the metal center in the film leaves little control over its position and its activity. We present here four novel, task‐specific ionic liquids [FPhnImHR]I (n=1, 2; R=PEG2, C12H25), designed to self‐assemble on a silica surface without any covalent bonding and offering a metal binding site in a controlled distance to the support. Advanced multinuclear solid‐state NMR spectroscopic techniques under Magic Angle Spinning, complemented by molecular dynamics (MD) simulations, allow us to determine their molecular conformation when deposited inside SBA‐15 as a model silica support. We provide here conceptual proof for a rational design of ionic liquids self‐assembling into thin films, opening an avenue for a second, improved generation of SILP catalysts. [ABSTRACT FROM AUTHOR]

Solid-state NMR (ss-NMR) is a powerful tool to investigate noncrystallizable, poorly soluble molecular systems, such as membrane proteins, amyloids, and cell walls, in environments that closely resemble their physical sites of action. Rotational-echo double resonance (REDOR) is an ss-NMR methodology, which by reintroducing heteronuclear dipolar coupling under magic angle spinning conditions provides intramolecular and intermolecular distance restraints at the atomic level. In addition, REDOR can be exploited as a selection tool to filter spectra based on dipolar couplings. Used extensively as a spectroscopic ruler between isolated spins in site-specifically labeled systems and more recently as a building block in multidimensional ss-NMR pulse sequences allowing the simultaneous measurement of multiple distances, REDOR yields atomic-scale information on the structure and interaction of proteins. By extending REDOR to the determination of 1H–X dipolar couplings in recent years, the limit of measurable distances has reached ~15–20 Å, making it an attractive method of choice for the study of complex biomolecular assemblies. Following a methodological introduction including the most recent implementations, examples are discussed to illustrate the versatility of REDOR in the study of biological systems. [ABSTRACT FROM AUTHOR]

Solid-state NMR (ss-NMR) is a powerful tool to investigate noncrystallizable, poorly soluble molecular systems, such as membrane proteins, amyloids, and cell walls, in environments that closely resemble their physical sites of action. Rotational-echo double resonance (REDOR) is an ss-NMR methodology, which by reintroducing heteronuclear dipolar coupling under magic angle spinning conditions provides intramolecular and intermolecular distance restraints at the atomic level. In addition, REDOR can be exploited as a selection tool to filter spectra based on dipolar couplings. Used extensively as a spectroscopic ruler between isolated spins in site-specifically labeled systems and more recently as a building block in multidimensional ss-NMR pulse sequences allowing the simultaneous measurement of multiple distances, REDOR yields atomic-scale information on the structure and interaction of proteins. By extending REDOR to the determination of 1H–X dipolar couplings in recent years, the limit of measurable distances has reached ~15–20 Å, making it an attractive method of choice for the study of complex biomolecular assemblies. Following a methodological introduction including the most recent implementations, examples are discussed to illustrate the versatility of REDOR in the study of biological systems.

Dynamic nuclear polarization surface enhanced NMR spectroscopy has enabled the determination of high-resolution structures from surface-supported molecules, including single-site heterogeneous catalysts. Structure determinations have largely mimicked the approaches used in biomolecular NMR spectroscopy, namely, using distance measurements to constrain a conformational search. These early demonstrations made use of purpose-built software, which has limited the adoption of the technique. Herein, we describe the open-source program INTERFACES (Interpret NMR to Elucidate or Reconstruct the Full Atomistic Configurations of External Surfaces) which automates the analysis of RE(SP)DOR data as well as the structure determination for surface sites. Distances, angles, dihedral angles, complex orientation, and distance from the support can all be sampled to find all structures that agree with the experimental data. A χ2 metric is used to define the error ranges of the REDOR fits and produce structures with an arbitrary level of confidence. Structural solutions are then provided as both overlays and ORTEP-like probability ellipsoids.

Dynamic nuclear polarization NMR spectroscopy was used to investigate the effect of the antimicrobial peptide (AMP) maculatin 1.1 on E. coli cells. The enhanced 15N NMR signals from nucleic acids, proteins and lipids identified a number of unanticipated physiological responses to peptide stress, revealing that membrane-active AMPs can have a multi-target impact on E. coli cells. DNP-enhanced 15N-observed 31P-dephased REDOR NMR allowed monitoring how Mac1 induced DNA condensation and prevented intermolecular salt bridges between the main E. coli lipid phosphatidylethanolamine (PE) molecules. The latter was supported by similar results obtained using E. coli PE lipid systems. Overall, the ability to monitor the action of antimicrobial peptides in situ will provide greater insight into their mode of action.

Molecular structure determination is the basis for understanding chemical processes and the property of materials. The direct dependence of the magnetic dipolar interaction on the distance makes solid‐state nuclear magnetic resonance (NMR) an excellent tool to study molecular structure when X‐ray crystallography fails to provide atomic‐resolution data. Although techniques to measure distances between pairs of isolated nuclear spin‐1/2 pairs are routine and easy to implement using the rotational echo double resonance (REDOR) experiment (Gullion & Schaefer, 1989), the existence of a nucleus with a spin > 1/2, appearing in approximately 75% of the elements in the periodic table, poses a challenge due to difficulties stemming from the large nuclear quadrupolar coupling constant (QCC). This mini‐review presents the existing solid‐state magic‐angle spinning NMR techniques aimed toward the efficient and accurate determination of internuclear distances between a spin‐1/2 and a "quadrupolar" nucleus having a spin larger than one half. Analytical expressions are provided for the various recoupling curves stemming from different techniques, and a coherent nomenclature for these various techniques is suggested. Treatment of some special cases such as multiple spin effects and spins with close Larmor frequencies is also discussed. The most advanced methods can recouple spins with quadrupolar frequencies up to tens of megahertz and beyond, expanding the distance measurement capabilities of solid‐state NMR to an increasingly growing number of applications and nuclear spin systems. [ABSTRACT FROM AUTHOR]

Accurate distance measurements between proton and nitrogen can provide detailed information on the structures and dynamics of various molecules. The combination of broadband phase-modulated (PM) pulse and rotational-echo saturation-pulse double-resonance (RESPDOR) sequence at fast magic-angle spinning (MAS) has enabled the measurement of multiple 1H-14N distances with high accuracy. However, complications may arise when applying this sequence to systems with multiple inequivalent 14N nuclei, especially a single 1H sitting close to multiple 14N atoms. Due to its broadband characteristics, the PM pulse saturates all 14N atoms; hence, the single 1H simultaneously experiences the RESPDOR effect from multiple 1H-14N couplings. Consequently, no reliable H-N distances are obtained. To overcome the problem, selective 14N saturation is desired, but it is difficult because 14N is an integer quadrupolar nucleus. Alternatively, 14N overtone (OT) NMR spectroscopy can be employed owing to its narrow bandwidth for selectivity. Moreover, owing to the sole presence of two energy levels (m = ± 1), the 14N OT spin dynamics behaves similarly to that of spin-1/2. This allows the interchangeability between RESPDOR and rotational-echo double-resonance (REDOR) since their principles are the same except the degree of 14N OT population transfer; saturation for the former whereas inversion for the latter. As the ideal saturation/inversion is impractical due to the slow and orientation-dependent effective nutation of 14N OT, the working condition is usually an intermediate between REDOR and RESPDOR. The degree of 14N OT population transfer can be determined from the results of protons with short distances to 14N and then can be used to obtain long-distance determination of other protons to the same 14N site. Herein, we combine the 14N OT and REDOR/RESPDOR to explore the feasibility of selective 1H-14N distance measurements. Experimental demonstrations on simple biological compounds of L-tyrosine.HCl, N-acetyl-L-alanine, and L-alanyl-L-alanine were performed at 14.1 T and MAS frequency of 62.5 kHz. The former two consist of a single 14N site, whereas the latter consists of two 14N sites. The experimental optimizations and reliable fittings by the universal curves are described. The extracted 1H-14N distances by OT-REDOR are in good agreement with those determined by PM-RESPDOR and diffraction techniques.

HIV-1 entry into cells is mediated by the fusion protein gp41. Cholesterol plays an important role in this virus–cell fusion, but molecular structural information about cholesterol–gp41 interaction is so far absent. Here, we present experimental and computational data about cholesterol complexation with gp41 in lipid bilayers. We focus on the C-terminal region of the protein, which comprises a membrane-proximal external region (MPER) and the transmembrane domain (TMD). We measured peptide–cholesterol contacts in virus-mimetic lipid bilayers using solid-state NMR spectroscopy, and augmented these experimental data with all-atom molecular dynamics simulations. 2D 19F NMR spectra show correlation peaks between MPER residues and the cholesterol isooctyl tail, indicating that cholesterol is in molecular contact with the MPER–TMD trimer. 19F–13C distance measurements between the peptide and 13C-labeled cholesterol show that C17 on the D ring and C9 at the intersection of B and C rings are ~ 7.0 Å from the F673 side-chain 4-19F. At high peptide concentrations in the membrane, the 19F–13C distance data indicate three cholesterol molecules bound near F673 in each trimer. Mutation of a cholesterol recognition amino acid consensus motif did not change these distances, indicating that cholesterol binding does not require this sequence motif. Molecular dynamics simulations further identify two hotspots for cholesterol interactions. Taken together, these experimental data and simulations indicate that the helix-turn-helix conformation of the MPER–TMD is responsible for sequestering cholesterol. We propose that this gp41–cholesterol interaction mediates virus–cell fusion by recruiting gp41 to the boundary of the liquid-disordered and liquid-ordered phases to incur membrane curvature. Unlabelled Image • The HIV fusion protein gp41 binds cholesterol in lipid membranes. • At high peptide concentration, at least three cholesterols bind a MPER–TMD trimer. • At low peptide concentration, one cholesterol remains bound to each trimer. • Cholesterol binding affects gp41-mediated HIV-cell fusion. [ABSTRACT FROM AUTHOR]

• A (S + 1/2) loss in many correlation and polarization-transfer experiments of quadrupole nuclei S. • Level-crossings of satellite transition and rf frequency under MAS complicate the spin dynamics of quadrupole nuclei. • NMR method development, high magnetic fields, efficient and high-power probes are important to quadrupole nuclei. High magnetic field can dramatically increase the spectral resolution and sensitivity of quadrupole nuclei S > 1/2 by the reduction of the second-order quadrupole broadening. A brief overview and outlook on spectral acquisition, the importance of high magnetic field, inter-nuclei distance measurement, various 2D separation and correlation methods of quadrupole nuclei are presented. The complications and consequences of spin dynamics under rf irradiation for the (2S + 1) level system and level-crossing with the satellite transition frequencies under magic-angle spinning are discussed. There is a scaling down of (S + 1/2) to the efficiency of many experiments in comparison with a spin-1/2 due to the fact that only two central transition spin states out of the (2S + 1) levels contribute to polarization transfer and spin correlation. [ABSTRACT FROM AUTHOR]

Abstract Octacalcium phosphate (OCP; Ca 8 (HPO 4) 2 (PO 4) 4. 5H 2 O) is a plausible precursor phase of biological hydroxyapatite, which composites with a number of biologically relevant organic metabolites. Widely used material science physicochemical structure determination techniques successfully characterize the mineral component of these composites but leave details of the structure, and interactions with mineral, of the organic component almost completely obscure. The metabolic linear di-acids succinate (SUC) and adipate (ADI) differentially expand the hydrated (100) layer of OCP. 13C 13C correlation (proton driven spin diffusion, PDSD) experiments on OCP composited with (U-13C 4)-SUC, and (U 13C 6)-ADI, show that the two di-acids per unit cell adopt non-centrosymmetric but mutually identical structures. 13C{31P}, rotational echo double resonance (REDOR) shows that one end of each linear di-acid is displaced further from the surface of the apatitic OCP layer relative to the other end. Overall the results indicate two di-acids per unit cell disposed perpendicularly across the OCP hydrated layer with one carboxylate of each di-acid substituting a hydrated surface OCP phosphate group. This study re-affirms the unique advantages of ssNMR in elucidating structural details of organic-inorganic biocomposites, and thereby mechanisms underlying the roles of small metabolites in influencing biomineralization mechanisms and outcomes. Graphical abstract Image 1 Highlights • OCP-succinate and OCP-adipate, are well ordered and amenable to NMR structure refinement. • DSD of 13C enriched di-acids reveal non-centrosymmetric conformers. • 13C{31P} REDOR shows asymmetric placement with respect to OCP hydrated surface, yielding valuable structural constraints. [ABSTRACT FROM AUTHOR]

Staphylococcus aureus biofilms pose a serious clinical threat as reservoirs for persistent infections. Despite this clinical significance, the composition and mechanism of formation of S. aureus biofilms are unknown. To address these problems, we used solid-state NMR to examine S. aureus (SA113), a strong biofilm-forming strain. We labeled whole cells and cell walls of planktonic cells, young biofilms formed for 12–24 h after stationary phase, and more mature biofilms formed for up to 60 h after stationary phase. All samples were labeled either by (i) [ 15 N]glycine and l -[1- 13 C]threonine, or in separate experiments, by (ii) l -[2- 13 C, 15 N]leucine. We then measured 13 C- 15 N direct bonds by C{N} rotational-echo double resonance (REDOR). The increase in peptidoglycan stems that have bridges connected to a surface protein was determined directly by a cell-wall double difference (biofilm REDOR difference minus planktonic REDOR difference). This procedure eliminates errors arising from differences in 15 N isotopic enrichments and from the routing of 13 C label from threonine degradation to glycine. For both planktonic cells and the mature biofilm, 20% of pentaglycyl bridges are not cross-linked and are potential surface-protein attachment sites. None of these sites has a surface protein attached in the planktonic cells, but one-fourth have a surface protein attached in the mature biofilm. Moreover, the leucine-label shows that the concentration of β-strands in leucine-rich regions doubles in the mature biofilm. Thus, a primary event in establishing a S. aureus biofilm is extensive decoration of the cell surface with surface proteins that are linked covalently to the cell wall and promote cell-cell adhesion. [ABSTRACT FROM AUTHOR]

Solid state NMR spectroscopy is inherently sensitive to chemical structure and composition and thus makes an ideal method to probe the heterogeneity of multicomponent polymers. Specifically, NMR spin diffusion experiments can be used to extract reliable information about spatial domain sizes on multiple length scales, provided that magnetization selection of one domain can be achieved. In this paper, we demonstrate the preferential filtering of protons in fluorinated domains during NMR spin diffusion experiments using 1H-19F heteronuclear dipolar dephasing based on rotational echo double resonance (REDOR) MAS NMR techniques. Three pulse sequence variations are demonstrated based on the different nuclei detected: direct 1H detection, plus both 1H➔13C cross polarization and 1H➔19F cross polarization detection schemes. This 1H-19F REDOR-filtered spin diffusion method was used to measure fluorinated domain sizes for a complex polymer blend. The efficacy of the REDOR-based spin filter does not rely on spin relaxation behavior or chemical shift differences and thus is applicable for performing NMR spin diffusion experiments in samples where traditional magnetization filters may prove unsuccessful. This REDOR-filtered NMR spin diffusion method can also be extended to other samples where a heteronuclear spin pair exists that is unique to the domain of interest. [ABSTRACT FROM AUTHOR]

Solid-state NMR spectra of whole cells and isolated cell walls of Enterococcus faecalis grown in media containing combinations of 13 C and 15 N specific labels in d - and l -alanine and l -lysine (in the presence of an alanine racemase inhibitor alaphosphin) have been used to determine the composition and architecture of the cell-wall peptidoglycan. The compositional variables include the concentrations of (i) peptidoglycan stems without bridges, (ii) d -alanylated wall teichoic acid, (iii) cross-links, and (iv) uncross-linked tripeptide and tetra/pentapeptide stems. Connectivities of l -alanyl carbonyl‑carbon bridge labels to d -[3- 13 C]alanyl and l -[ε- 15 N]lysyl stem labels prove that the peptidoglycan of E. faecalis has the same hybrid short-bridge architecture (with a mix of parallel and perpendicular stems) as the FemA mutant of Staphylococcus aureus , in which the cross-linked stems are perpendicular to one another and the cross-linking is close to the ideal 50% value. This is the first determination of the cell-wall chemical and geometrical architecture of whole cells of E. faecalis , a major source of nosocomial infections worldwide. [ABSTRACT FROM AUTHOR]

The structural information of small therapeutic compounds complexed in biological matrices is important for drug developments. However, structural studies on ligands bound to such a large and dynamic system as microtubules are still challenging. This article reports an application of the solid-state NMR technique to investigating the bioactive conformation of epothilone B, a microtubule stabilizing agent, whose analog ixabepilone was approved by the U.S. Food and Drug Administration (FDA) as an anticancer drug. First, an analog of epothilone B was designed and successfully synthesized with deuterium and fluorine labels while keeping the high potency of the drug; Second, a lyophilization protocol was developed to enhance the low sensitivity of solid-state NMR; Third, molecular dynamics information of microtubule-bound epothilone B was revealed by high-resolution NMR spectra in comparison to the non-bound epothilone B; Last, information for the macrolide conformation of microtubule-bound epothilone B was obtained from rotational-echo double-resonance (REDOR) NMR data, suggesting the X-ray crystal structure of the ligand in the P450epoK complex as a possible candidate for the conformation. Our results are important as the first demonstration of using REDOR for studying epothilones. [ABSTRACT FROM AUTHOR]

The case of rotational echo double resonance (REDOR) experiments on the observe nuclei 11 B and 31 P interacting with multiple I =1 quadrupolar nuclei is analyzed in detail by SIMPSON simulations and experimental studies. The simulations define the region within the parameter space spanned by nutation frequency, quadrupolar coupling constant and spinning frequency where the parabolic analysis of the initial REDOR curve in terms of dipolar second moments has validity. The predictions are tested by experimental studies on the crystalline model compounds lithium diborate and lithium pyrophosphate, which are subsequently extended to measure dipolar second moments M 2 ( 11 B{ 6 Li}) and M 2 ( 31 P{ 6 Li}) in three borophosphate glasses. The data indicate that the lithium cations interact significantly more strongly with the phosphate than with the borate species, despite the formally anionic character of four-coordinate boron and the formally neutral character of the ultraphosphate (P (3) ) units to which they are linked. [ABSTRACT FROM AUTHOR]

The carboxylic acid proton and the lithium coordination environments for precise and random Li-neutralized polyethylene acrylic acid P(E-AA) ionomers were explored using high speed solid-state 1H and 7Li MAS NMR. While the 7Li NMR revealed only a single Li coordination environment, the chemical shift temperature variation was dependent on the precise or random nature of the P(E-AA) ionomer. The 1H MAS NMR revealed two different carboxylic acid proton environments in these materials. By utilizing 1H-7Li rotational echo double resonance (REDOR) MAS NMR experiments, it was demonstrated that the proton environments correspond to different average 1H-7Li distances, with the majority of the protonated carboxylic acids having a close through space contact with the Li. Molecular dynamics simulations suggest that the shortest 1H-7Li distance corresponds to un-neutralized carboxylic acids directly involved in the coordination environment of Li clusters. These solid-state NMR results show that heterogeneous structural motifs need to be included when developing descriptions of these ionomer materials.

Through biomineralization, calcareous composites are produced with exceptional properties, evolution-optimized for specific function. The bioinspired quest to understand how properties are controlled and enhanced is motivated by their fundamental and technological significance. The incorporation of small molecules and/or biopolymers as inter- and intra-crystalline additives in the CaCO 3 matrix, is widely employed by organisms to achieve diverse functions. The interactions between the components during the early events within the precipitation medium, and when entrapped through precipitation-crystallization, are key players of process–property regulation. In addition to identifying the bulk matrices and the incorporated molecules, we show how solid-state NMR methods are tailored to directly report the chemical-structural details of the inorganic interface that surrounds an occlusion. Solid-state NMR is uniquely suited for that and is applicable to stable or spontaneously transforming lattices, crystalline or amorphous. Our findings are grouped to highlight the connection between the molecular level and tunability of macroscopic properties. [Display omitted] [ABSTRACT FROM AUTHOR]

Solid state NMR (ssNMR) can characterize mineral ( 31 P) and organic ( 13 C) components of human salivary stones ( n = 8). All show apatitic 31 P spectra. 13 C ssNMR indicates more protein, of more consistent composition, than apatitic uroliths, with prominent signals from Tyr, Phe, and His. Citrate and lipids, identified by dipolar dephasing (DD), and polysaccharides are also observable in varying amounts. 13 C{ 31 P} rotational echo double resonance ( 13 C{ 31 P} REDOR) identifies carbon atoms in close (

Organic phosphorus incorporated in calcite during laboratory precipitation experiments and in natural cave deposits was investigated by solid-state NMR spectroscopy. For calcite precipitated in the presence of organic phosphoesters of varying size and functionality, solid-state 31 P{ 1 H} CP/MAS NMR shows that the phosphoesters were incorporated intact into the solid. Systematic changes in the 31 P NMR chemical shift of the phosphate group were observed between the solid phosphoester and that incorporated in the solid precipitate, yielding 31 P NMR chemical shifts of the coprecipitates in the range of +1.8 to −2.2 ppm. These chemical shifts are distinct from that of similarly prepared calcite coprecipitated with inorganic phosphate, 3.5 ppm. Only minor changes were noted in the phosphoester 31 P chemical shift anisotropy (CSA) which suggests no significant change in the local structure of the phosphate group, which is dominated by C–O–P bonding. Close spatial proximity of the organic phosphate group to calcite structural components was revealed by 31 P/ 13 C rotational echo double resonance (REDOR) experiments for coprecipitates prepared with 13 C-labeled carbonate. All coprecipitates showed significant 31 P dephasing effects upon 13 C-irradiation, signaling atomic-scale proximity to carbonate carbon. The dephasing rate for smaller organophosphate molecules is similar to that observed for inorganic phosphate, whereas much slower dephasing was observed for larger molecules having long and/or bulky side-chains. This result suggests that small organic molecules can be tightly enclosed within the calcite structure, whereas significant structural disruption required to accommodate the larger organic molecules leads to longer phosphate–carbonate distances. Comparison of 31 P NMR spectroscopic data from the synthetic coprecipitates with those from calcite moonmilk speleothems indicates that phosphorus occurs mainly as inorganic orthophosphate in the natural deposits, although small signals occur with characteristics consistent with phosphate monoesters. The results of this study indicate that trace- to minor concentrations of dissolved organic molecules can be effectively taken up during calcite precipitation and incorporated in the structure, leaving a resilient record of materials present during crystallization. [ABSTRACT FROM AUTHOR]

We investigate theoretically intriguing aspects of a simple rotational-echo double-resonance (REDOR) NMR technique for homonuclear spin-1/2 pairs undergoingMAS. The simple technique sets Gaussian soft ⨅ pulses at every halfMAS rotational period in the pulse sequence. The reduction in rotational echo amplitude (the REDOR echo reduction) is observed at the end of the evolution period te = (n+1)Tr, where Tr is aMAS rotational period. The exact average Hamiltonians for the homonuclear REDOR (hm-REDOR) technique are calculated by dividing the evolution period into four periods. We show theoretically and experimentally that the hm-REDOR technique produces the REDOR echo reductions for homonuclear spin-1/2 pairs. In addition, the theoretical results reveal that the REDOR echo reductions are independent of the chemical-shift difference, δ, under a simple condition of κ = δ/ωr ≥ 6 and te<10 ∙ (1/d'), where ωr is the sample spinning frequency and d' is the dipolar coupling constant expressed in Hz. We call this simple condition the master condition. This means that the REDOR echo reductions for a homonuclear spin-1/2 pair can be calculated under the master condition by considering only d' and ωr, which is the case for a heteronuclear spin pair. Finally, we demonstrate that four-phase cycling yields the multiple-quantum filtered hm-REDOR experiment, where the appearance of the REDOR echo reductions shows that the echo reductions are definitely attributable to the homonuclear dipolar interaction even if there is a slight unwanted effect from the recovered chemical-shift anisotropy in these reductions. [ABSTRACT FROM AUTHOR]

A new pulse sequence entitled DQ-DRENAR ( D ouble- Q uantum based D ipolar R ecoupling E ffects N uclear A lignment R eduction) was recently described for the quantitative measurement of magnetic dipole–dipole interactions in homonuclear spin-1/2 systems involving multiple nuclei. As described in the present manuscript, the efficiency and performance of this sequence can be significantly improved, if the measurement is done in the constant-time mode. We describe both the theoretical analysis of this method and its experimental validation of a number of crystalline model compounds, considering both symmetry-based and back-to-back (BABA) DQ-coherence excitation schemes. Based on the combination of theoretical analysis and experimental results we discuss the effect of experimental parameters such as the chemical shift anisotropy (CSA), the spinning rate, and the radio frequency field inhomogeneity upon its performance. Our results indicate that constant-time (CT-) DRENAR is a method of high efficiency and accuracy for compounds with multiple homonuclear spin systems with particular promise for the analysis of stronger-coupled and short T 2 spin systems. [ABSTRACT FROM AUTHOR]

Solid-state NMR is a powerful and non-perturbative method to measure and define chemical composition and architecture in bacterial cell walls, even in the context of whole cells. Most NMR studies on whole cells have used selectively labeled samples. Here, we introduce an NMR sequence relay using frequency-selective REDOR (fsREDOR) and spin diffusion elements to probe a unique amine contribution in uniformly 13 C- and 15 N-labeled Staphylococcus aureus whole cells that we attribute to the d -alanine of teichoic acid. In addition to the primary peptidoglycan structural scaffold, cell walls can contain significant amounts of teichoic acid that contribute to cell-wall function. When incorporated into teichoic acid, d -alanine is present as an ester, connected via its carbonyl to a ribitol carbon, and thus has a free amine. Teichoic acid d -Ala is removed during cell-wall isolations and can only be detected in the context of whole cells. The sequence presented here begins with fsREDOR and a chemical shift evolution period for 2D data acquisition, followed by DARR spin diffusion and then an additional fsREDOR period. fsREDOR elements were used for 13 C observation to avoid complications from 13 C– 13 C couplings due to uniform labeling and for 15 N dephasing to achieve selectivity in the nitrogens serving as dephasers. The results show that the selected amine nitrogen of interest is near to teichoic acid ribitol carbons and also the methyl group carbon associated with alanine. In addition, its carbonyl is not significantly dephased by amide nitrogens, consistent with the expected microenvironment around teichoic acid. [ABSTRACT FROM AUTHOR]

Distance measurements between a half-spin and a quadrupolar S =1 spin having a small quadrupolar coupling constant can be performed using the rotational echo double resonance (REDOR) experiment. We derived an analytical expression for the probability of transitions between energy levels resulting from the application of an arbitrary pulse flip angle to the quadrupolar spin and consequently minimized the probability that populations of individual levels do not undergo a spin transition during the pulse. As a result we discovered that if the flip angle of the quadrupolar spin pulse is 109.47°, the maximal recoupling values are the largest possible and the signal reaches a maximum value of 8/9, larger than in the use of either a 90° pulse or a 180° pulse. In addition, the slope of the initial decay is higher than that of the 90° pulse. The recoupling signal can be modeled by an exact analytical formula in the ideal case and simulations show that the advantage of the 109.47° pulse is preserved when the quadrupolar coupling constant C Q has a finite value typical of 2 H and 6 Li spins (up to C Q ~200 kHz). Experimental results on two spin pairs, 2 H– 13 C and 6 Li– 13 C, demonstrate the validity and accuracy of this method. [ABSTRACT FROM AUTHOR]

This research, based on bibliographical and documentary approaches, aimed to recover the trajectory and memory of gender studies centers and groups belonging to REDOR, a feminist network of gender and women studies centers in the North and Northeast of Brazil. Data collection included: background and institutional location; profile and academic field of members; research, extension and training projects developed; impact on institucional policies; partnerships and social impact. Initially, we highlight the significance of the creation of these gender research centers and network, which emerged in order to legitimate a new field of knowledge. Next, we present the data that was possible to collect about 35 centers and groups. We conclude that REDOR is very important for the regions, insofar as it promotes the exchance of knowledge, in the context of the struggle for gender equity. [ABSTRACT FROM AUTHOR]

Understanding the structure of membrane-active peptides faces many challenges associated with the development of appropriate model membrane systems as the peptide structure depends strongly on the lipid environment. This perspective provides a brief overview of the approach taken to study antimicrobial and amyloid peptides in phospholipid bilayers using oriented bilayers and magic angle spinning techniques. In particular, Boltzmann statistics REDOR and maximum entropy analysis of spinning side bands are used to analyse systems where multiple states of peptide or lipid molecules may co-exist. We propose that in future, rather than model membranes, structural studies in whole cells are feasible. [ABSTRACT FROM AUTHOR]

Rotational-echo double-resonance (REDOR) solid-state NMR is applied to probe the membrane locations of specific residues of membrane proteins. Couplings are measured between protein 13 CO nuclei and membrane lipid or cholesterol 2 H and 31 P nuclei. Specific 13 CO labeling is used to enable unambiguous assignment and 2 H labeling covers a small region of the lipid or cholesterol molecule. The 13 CO– 31 P and 13 CO– 2 H REDOR respectively probe proximity to the membrane headgroup region and proximity to specific insertion depths within the membrane hydrocarbon core. One strength of the REDOR approach is use of chemically-native proteins and membrane components. The conventional REDOR pulse sequence with 100 kHz 2 H π pulses is robust with respect to the 2 H quadrupolar anisotropy. The 2 H T 1 ’s are comparable to the longer dephasing times ( τ ’s) and this leads to exponential rather than sigmoidal REDOR buildups. The 13 CO– 2 H buildups are well-fitted to A × (1 − e − γτ ) where A and γ are fitting parameters that are correlated as the fraction of molecules ( A ) with effective 13 CO– 2 H coupling d = 3 γ /2. The REDOR approach is applied to probe the membrane locations of the “fusion peptide” regions of the HIV gp41 and influenza virus hemagglutinin proteins which both catalyze joining of the viral and host cell membranes during initial infection of the cell. The HIV fusion peptide forms an intermolecular antiparallel β sheet and the REDOR data support major deeply-inserted and minor shallowly-inserted molecular populations. A significant fraction of the influenza fusion peptide molecules form a tight hairpin with antiparallel N - and C -α helices and the REDOR data support a single peptide population with a deeply-inserted N -helix. The shared feature of deep insertion of the β and α fusion peptide structures may be relevant for fusion catalysis via the resultant local perturbation of the membrane bilayer. Future applications of the REDOR approach may include samples that contain cell membrane extracts and use of lower temperatures and dynamic nuclear polarization to reduce data acquisition times. [ABSTRACT FROM AUTHOR]

The genomics and proteomics revolutions have been enormously successful in providing crucial “parts lists” for biological systems. Yet, formidable challenges exist in generating complete descriptions of how the parts function and assemble into macromolecular complexes and whole-cell assemblies. Bacterial biofilms are complex multicellular bacterial communities protected by a slime-like extracellular matrix that confers protection to environmental stress and enhances resistance to antibiotics and host defenses. As a non-crystalline, insoluble, heterogeneous assembly, the biofilm extracellular matrix poses a challenge to compositional analysis by conventional methods. In this perspective, bottom-up and top-down solid-state NMR approaches are described for defining chemical composition in complex macrosystems. The “sum-of-the-parts” bottom-up approach was introduced to examine the amyloid-integrated biofilms formed by Escherichia coli and permitted the first determination of the composition of the intact extracellular matrix from a bacterial biofilm. An alternative top-down approach was developed to define composition in Vibrio cholerae biofilms and relied on an extensive panel of NMR measurements to tease out specific carbon pools from a single sample of the intact extracellular matrix. These two approaches are widely applicable to other heterogeneous assemblies. For bacterial biofilms, quantitative parameters of matrix composition are needed to understand how biofilms are assembled, to improve the development of biofilm inhibitors, and to dissect inhibitor modes of action. Solid-state NMR approaches will also be invaluable in obtaining parameters of matrix architecture. [ABSTRACT FROM AUTHOR]

Peptidoglycan is an essential component of cell wall in Gram-positive bacteria with unknown architecture. In this review, we summarize solid-state NMR approaches to address some of the unknowns in the Gram-positive bacteria peptidoglycan architecture: 1) peptidoglycan backbone conformation, 2) PG-lattice structure, 3) variations in the peptidoglycan architecture and composition, 4) the effects of peptidoglycan bridge-length on the peptidoglycan architecture in Fem mutants, 5) the orientation of glycan strands with respect to the membrane, and 6) the relationship between the peptidoglycan structure and the glycopeptide antibiotic mode of action. Solid-state NMR analyses of Staphylococcus aureus cell wall show that peptidoglycan chains are surprisingly ordered and densely packed. The peptidoglycan disaccharide backbone adopts 4-fold screw helical symmetry with the disaccharide unit periodicity of 40 Å. Peptidoglycan lattice in the S . aureus cell wall is formed by cross-linked PG stems that have parallel orientations. The structural characterization of Fem-mutants of S . aureus with varying lengths of bridge structures suggests that the PG-bridge length is an important determining factor for the PG architecture. This article is part of a Special Issue entitled: NMR Spectroscopy for Atomistic Views of Biomembranes and Cell Surfaces. Guest Editors: Lynette Cegelski and David P. Weliky. [ABSTRACT FROM AUTHOR]

Bacterial biofilms are communities of bacterial cells surrounded by a self-secreted extracellular matrix. Biofilm formation by Vibrio cholerae , the human pathogen responsible for cholera, contributes to its environmental survival and infectivity. Important genetic and molecular requirements have been identified for V. cholerae biofilm formation, yet a compositional accounting of these parts in the intact biofilm or extracellular matrix has not been described. As insoluble and non-crystalline assemblies, determinations of biofilm composition pose a challenge to conventional biochemical and biophysical analyses. The V. cholerae extracellular matrix composition is particularly complex with several proteins, complex polysaccharides, and other biomolecules having been identified as matrix parts. We developed a new top-down solid-state NMR approach to spectroscopically assign and quantify the carbon pools of the intact V. cholerae extracellular matrix using 13 C CPMAS and 13 C{ 15 N}, 15 N{ 31 P}, and 13 C{ 31 P}REDOR. General sugar, lipid, and amino acid pools were first profiled and then further annotated and quantified as specific carbon types, including carbonyls, amides, glycyl carbons, and anomerics. In addition, 15 N profiling revealed a large amine pool relative to amide contributions, reflecting the prevalence of molecular modifications with free amine groups. Our top-down approach could be implemented immediately to examine the extracellular matrix from mutant strains that might alter polysaccharide production or lipid release beyond the cell surface; or to monitor changes that may accompany environmental variations and stressors such as altered nutrient composition, oxidative stress or antibiotics. More generally, our analysis has demonstrated that solid-state NMR is a valuable tool to characterize complex biofilm systems. This article is part of a Special Issue entitled: NMR Spectroscopy for Atomistic Views of Biomembranes and Cell Surfaces. Guest Editors: Lynette Cegelski and David P. Weliky. [ABSTRACT FROM AUTHOR]

Highlights: [•] We present a new method for measuring interatomic distances in large quadrupole spins. [•] Recoupling is obtained by the application of a 10-rotor period phase-modulated pulse. [•] Phase modulated LA-REDOR is robust with respect to rf, offset and spin number. [•] The experimental recoupling curve can be modeled with a universal Bessel formula. [•] The performance is experimentally verified on 13C–11B and 15N–51V spin pairs. [ABSTRACT FROM AUTHOR]

Bacteria associate with surfaces and one another by elaborating an extracellular matrix to encapsulate cells, creating communities termed biofilms. Biofilms are beneficial in some ecological niches, but also contribute to the pathogenesis of serious and chronic infectious diseases. New approaches and quantitative measurements are needed to define the composition and architecture of bacterial biofilms to help drive the development of strategies to interfere with biofilm assembly. Solid-state nuclear magnetic resonance (NMR) is uniquely suited to the examination of insoluble and complex macromolecular and whole-cell systems. This article highlights three examples that implement solid-state NMR to deliver insights into bacterial biofilm composition and changes in cell-wall composition as cells transition to the biofilm lifestyle. Most recently, solid-state NMR measurements provided a total accounting of the protein and polysaccharide components in the extracellular matrix of anEscherichia colibiofilm and transformed our qualitative descriptions of matrix composition into chemical parameters that permit quantitative comparisons among samples. We present additional data for whole biofilm samples (cells plus the extracellular matrix) that complement matrix-only analyses. The study of bacterial biofilms by solid-state NMR is an exciting avenue ripe with many opportunities and we close the article by articulating some outstanding questions and future directions in this area. [ABSTRACT FROM AUTHOR]

Highlights: [•] REDOR with CPMG speeds up distance measurement in solids by one order of magnitude. [•] CPMG with XY-8 phase cycling maintains long lasting echo while compensating imperfect refocusing pulses. [•] Full echo acquisition has a √2 gain in S/N over half-echo signal. [ABSTRACT FROM AUTHOR]

Dynamic nuclear polarization NMR spectroscopy was used to investigate the effect of the antimicrobial peptide (AMP) maculatin 1.1 on E. coli cells. The enhanced 15 N NMR signals from nucleic acids, proteins and lipids identified a number of unanticipated physiological responses to peptide stress, revealing that membrane-active AMPs can have a multi-target impact on E. coli cells. DNP-enhanced 15 N-observed 31 P-dephased REDOR NMR allowed monitoring how Mac1 induced DNA condensation and prevented intermolecular salt bridges between the main E. coli lipid phosphatidylethanolamine (PE) molecules. The latter was supported by similar results obtained using E. coli PE lipid systems. Overall, the ability to monitor the action of antimicrobial peptides in situ will provide greater insight into their mode of action., Competing Interests: The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (© 2022 The Author(s).)

Abstract: Rotational-echo double-resonance (REDOR) NMR is a powerful and versatile solid-state NMR measurement that has been recruited to elucidate drug modes of action and to drive the design of new therapeutics. REDOR has been implemented to examine composition, structure, and dynamics in diverse macromolecular and whole-cell systems, including taxol-bound microtubules, enzyme–cofactor–inhibitor ternary complexes, and antibiotic–whole-cell complexes. The REDOR approach involves the integrated design of specific isotopic labeling strategies and the selection of appropriate REDOR experiments. By way of example, this digest illustrates the versatility of the REDOR approach, with an emphasis on the practical considerations of experimental design and data interpretation. [Copyright &y& Elsevier]

Solid-state NMR provides insight into protein motion over time scales ranging from picoseconds to seconds. While in solution state the methodology to measure protein dynamics is well established, there is currently no such consensus protocol for measuring dynamics in solids. In this article, we perform a detailed investigation of measurement protocols for fast motions, i.e. motions ranging from picoseconds to a few microseconds, which is the range covered by dipolar coupling and relaxation experiments. We perform a detailed theoretical investigation how dipolar couplings and relaxation data can provide information about amplitudes and time scales of local motion. We show that the measurement of dipolar couplings is crucial for obtaining accurate motional parameters, while systematic errors are found when only relaxation data are used. Based on this realization, we investigate how the REDOR experiment can provide such data in a very accurate manner. We identify that with accurate rf calibration, and explicit consideration of rf field inhomogeneities, one can obtain highly accurate absolute order parameters. We then perform joint model-free analyses of 6 relaxation data sets and dipolar couplings, based on previously existing, as well as new data sets on microcrystalline ubiquitin. We show that nanosecond motion can be detected primarily in loop regions, and compare solid-state data to solution-state relaxation and RDC analyses. The protocols investigated here will serve as a useful basis towards the establishment of a routine protocol for the characterization of ps–μs motions in proteins by solid-state NMR. [ABSTRACT FROM AUTHOR]

We here review the principles and applications of solid-state NMR spectroscopy of quadrupolar nuclei, with a special emphasis on structural studies of inorganic solids. Most NMR-observable nuclei have spin I > 1/2, and possess a quadrupole moment. The resulting quadrupolar interaction severely broadens the resonances, but also encapsulates valuable information about the symmetry of the electronic surroundings of the observed nucleus. The effect of the quadrupolar interaction, as well as that of the chemical shift and dipolar interaction, on solid-state NMR spectra is examined in this article. To regain good resolution, specifically designed NMR techniques exist to remove the quadrupolar broadening, i.e. overtone and MQMAS spectroscopy, the principles of which are outlined here. In addition, the possibility of distance measurements via the dipolar interaction using the REDOR technique is discussed. The combined information derived from distance measurements, quadrupolar and chemical shift parameters can be helpful for determination of the crystal structure, or for detection of impurity phases, as illustrated by surveying a number of case studies covering spin I = 1, 3/2, 5/2 and 7/2. [ABSTRACT FROM AUTHOR]

Abstract: 17O solid-state NMR was used to study oxygen connectivity in ternary cesium borosilicate glasses. 17O multiple-quantum magic-angle spinning (MAS) NMR and ultrahigh-field 17O MAS NMR provide resolution of non-bridging and bridging oxygens, permitting their quantification for modeling short-range order. 17O{11B} rotational-echo double-resonance (REDOR) NMR is used to verify peak assignments for B–O–B, Si–O–B and Si–O–Si species, which agree well with a body of data from other alkali borosilicate glasses. The resulting bridging oxygen populations are in poor agreement with a model based on random network mixing, suggesting some degree of macroscopic segregation into silica-rich and borate-rich phases. Electron microprobe analysis reveals significant compositional variation between the batch and final products due to cesium volatilization at high temperatures. Both phase separation and elemental boil-off must be considered to account fully for the 17O MAS NMR results. [Copyright &y& Elsevier]

Abstract: In this article we present a new approach to high resolution NMR combining the concepts of magic angle hopping (MAH)/magic angle turning (MAT) and dipolar based NMR methods such as SEDOR, REDOR or cross polarization (CP). Employing aluminophosphates as model systems we demonstrate that No MAS needed (NOMAS) is capable of supplying high resolution dipolar information without the need of fast MAS. [Copyright &y& Elsevier]

The influenza virus fusion peptide is the N-terminal ~20 residues of the HA2 subunit of the hemagglutinin protein and this peptide plays a key role in the fusion of the viral and endosomal membranes during initial infection of a cell. The fusion peptide adopts N-helix/turn/C-helix structure in both detergent and membranes with reports of both open and closed interhelical topologies. In the present study, backbone CO-N REDOR solid-state NMR was applied to the membrane-associated fusion peptide to detect the distribution of interhelical distances. The data clearly showed a large fraction of closed and semi-closed topologies and were best-fitted to a mixture of two structures that do not exchange. One of the earlier open structural models may have incorrect G13 dihedral angles derived from TALOS analysis of experimentally correct C shifts. [ABSTRACT FROM AUTHOR]

Residue-specific location of peptides in the hydrophobic core of membranes was examined using C-H REDOR and samples in which the lipids were selectively deuterated. The transmembrane topology of the KALP peptide was validated with this approach with substantial dephasing observed for deuteration in the bilayer center and reduced or no dephasing for deuteration closer to the headgroups. Insertion of β sheet HIV and helical and β sheet influenza virus fusion peptides into the hydrophobic core of the membrane was validated in samples with extensively deuterated lipids. [ABSTRACT FROM AUTHOR]

Abstract: Distance measurements between a spin-1/2 and a second spin bearing a large anisotropy are performed using a modified rotational echo double resonance (REDOR) experiment. By applying pairs of rotor-synchronized π pulses on the detected spin and a single long pulse on the coupled spin the dipolar interaction is efficiently recoupled even at the sudden passage limit where both adiabaticity and the hard pulse approximation are not valid. In this manuscript we derive the theoretical basis for analyzing the behavior of single crystallites in order to gain insight into the mechanism of dipolar recoupling, and in order to find conditions for optimizing the experiment. The use of reduced time and frequency variables show that the signal depends on the ratios of the radio frequency strength ν 1 and the anisotropy, either the CSA (ν σ ) or the quadrupolar interaction (ν Q ), with respect to the spinning frequency ν R . We derive expressions for the contribution of individual crystallites to the signal arising from the different frequencies mν d (m =0,1…2S) associated with the dipolar interaction and show that they result in a non-random distribution of intensities. For a spin-1/2 with a large CSA (up to 1MHz and more) we show using calculations and simulations that the result is a recoupling signal that takes maximal values ΔS/S0 of ∼0.6–0.7, beyond the saturation limit of 0.5, defined by equal contribution of all transitions. For a spin-3/2 we show that at certain conditions the non-random scrambling may result in an apparent saturation-like behavior. In all cases large RF amplitudes are not necessarily required for obtaining efficient recoupling. 13C–11B LA-REDOR (Low-Alpha/Low-rf-Amplitude REDOR) dipolar recoupling experiments on 4-methoxyphenylboronic acid were performed following optimization of the spinning rates suitable for low amplitude radio-frequency power levels and show that efficient recoupling can be obtained for a spin-3/2, and that distance determination is not very strongly dependent on the actual value of the quadrupolar coupling constant. [Copyright &y& Elsevier]