1. GATA2 deficiency phenotype associated with tandem duplication of GATA2 and overexpression of GATA2-AS1
- Author
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Benedicte Neven, Preeti Singh, Rachel E. Dickinson, Mojgan Reza, Aneta Mikulasova, Laetitia Largeaud, Venetia Bigley, Anastasia Resteu, Eric Delabesse, Jacinta Bustamante, Matthew Collin, Maninder Heer, Daniel Rico, Marlène Pasquet, Stephanie Dufrechou, and Naïs Prade
- Subjects
GATA2 Deficiency ,DNA Copy Number Variations ,Hematology ,Biology ,Molecular biology ,Monocytes ,Frameshift mutation ,GATA2 Transcription Factor ,Phenotype ,Transcription (biology) ,Chimeric RNA ,Child, Preschool ,Gene duplication ,Humans ,Exceptional Case Report ,Female ,Tandem exon duplication ,Copy-number variation ,Allele ,Alleles - Abstract
Key Points Typical features of GATA2 deficiency were associated with a de novo tandem duplication of GATA2 and increased expression of GATA2-AS1.The duplication contained a maternally inherited deletion copy number polymorphism esv2725896/nsv513733., A 3-year-old girl of nonconsanguineous healthy parents presented with cervical and mediastinal lymphadenopathy due to Mycobacterium fortuitum infection. Routine blood analysis showed normal hemoglobin, neutrophils, and platelets but profound mononuclear cell deficiency (monocytes < 0.1 × 109/L; B cells 78/μL; NK cells 48/μL). A 548 902-bp region containing GATA2 was sequenced by targeted capture and deep sequencing. This revealed a de novo 187-kb duplication of the entire GATA2 locus, containing a maternally inherited copy number variation deletion of 25 kb (GRCh37: esv2725896 and nsv513733). Many GATA2-associated phenotypes have been attributed to amino acid substitution, frameshift/deletion, loss of intronic enhancer function, or aberrant splicing. Gene deletion has been described, but other structural variation has not been reported in the germline configuration. In this case, duplication of the GATA2 locus was paradoxically associated with skewed diminished expression of GATA2 messenger RNA and loss of GATA2 protein. Chimeric RNA fusion transcripts were not detected. A possible mechanism involves increased transcription of the anti-sense long noncoding RNA GATA2-AS1 (RP11-472.220), which was increased several fold. This case further highlights that evaluation of the allele count is essential in any case of suspected GATA2-related syndrome.
- Published
- 2021