93 results on '"Raja MAZ"'
Search Results
2. Design of Confidence-Integrated Denoising Auto-Encoder for Personalized Top-N Recommender Systems
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Khan, ZA, Chaudhary, NI, Abbasi, WA, Ling, SH, Raja, MAZ, Khan, ZA, Chaudhary, NI, Abbasi, WA, Ling, SH, and Raja, MAZ
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A recommender system not only “gains users’ confidence” but also helps them in other ways, such as reducing their time spent and effort. To gain users’ confidence, one of the main goals of recommender systems in an e-commerce industry is to estimate the users’ interest by tracking the users’ transactional behavior to provide a fast and highly related set of top recommendations out of thousands of products. The standard ranking-based models, i.e., the denoising auto-encoder (DAE) and collaborative denoising auto-encoder (CDAE), exploit positive-only feedback without utilizing the ratings’ ranks for the full set of observed ratings. To confirm the rank of observed ratings (either low or high), a confidence value for each rating is required. Hence, an improved, confidence-integrated DAE is proposed to enhance the performance of the standard DAE for solving recommender systems problems. The correctness of the proposed method is authenticated using two standard MovieLens datasets such as ML-1M and ML-100K. The proposed study acts as a vital contribution for the design of an efficient, robust, and accurate algorithm by learning prominent latent features used for fast and accurate recommendations. The proposed model outperforms the state-of-the-art methods by achieving improved P@10, R@10, NDCG@10, and MAP scores.
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- 2023
3. Editorial: The future prospects of alternative fuels
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Erinç Uludamar, Bengi Şanlı, J. Ranjitha, Raja Mazuir Raja Ahsan Shah, and Petar Ilinčić
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alternative fuels ,internal combustion engines ,exhaust emissions ,energy ,exergy ,modelling ,General Works - Published
- 2024
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4. Rheology of hydro-magnetic polymeric material with heat generation/absorption and chemical reaction
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Awais, M, primary, Awan, SE, additional, Irum, S, additional, Shoaib, M, additional, Ali, H, additional, and Raja, MAZ, additional
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- 2020
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5. Design of meta-heuristic computing paradigms for Hammerstein identification systems in electrically stimulated muscle models
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Mehmood, A, Zameer, A, Chaudhary, NI, Ling, SH, and Raja, MAZ
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Artificial Intelligence & Image Processing - Published
- 2020
6. Integrated computational intelligent paradigm for nonlinear electric circuit models using neural networks, genetic algorithms and sequential quadratic programming.
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Mehmood, A, Zameer, A, Ling, SH, Rehman, AU, Raja, MAZ, Mehmood, A, Zameer, A, Ling, SH, Rehman, AU, and Raja, MAZ
- Published
- 2020
7. Diesel engine vibration analysis using artificial neural networks method: Effect of NH3 additive in biodiesels
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Raja Mazuir Raja Ahsan Shah, Ömer Böyükdipi, Gökhan Tüccar, Awni Al-Otoom, and Hakan Serhad Soyhan
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ANN ,Biodiesel ,Diesel vibration ,Engine modelling ,Transportation engineering ,TA1001-1280 - Abstract
Diesel engine parameters, such as fuel and its additives, play an essential role in minimising the effects of engine vibration. This study aimed to use artificial neural networks (ANN) to model and analyse diesel engine vibration characteristics at different engine speeds using NH3 as an additive in hazelnut (HD), peanut (PD), and waste-cooking oil (WD) biodiesels. The results showed good correlations between the ANN models and experimental results using regression analysis methods. The ANN models for diesel engines showed high accuracy. The ANN models indicated that a 5 % NH3 additive decreased engine vibration for HD and PD.In comparison, 10 % and 15 % NH3 additive ratios increased engine vibration for HD, PD, and WD due to low combustion quality. The lowest vibration levels occurred with P100, P95A5, P90A10, and P85A15 at 1200 rpm. H100 and H95A5 produced the highest diesel engine resultant vibration (DERV) values. All ANN models generated the lowest and highest DERV values at 1200 rpm and 2100 rpm, respectively. The RMS method showed that H95A5, P85A15, and W85A15 contributed the most to diesel engine vibration. Using a low amount of NH3 additive positively affected DERV for HD and PD but not for WD.
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- 2024
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8. Integrated computational intelligent paradigm for nonlinear electric circuit models using neural networks, genetic algorithms and sequential quadratic programming
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Mehmood, A, Zameer, A, Ling, SH, Rehman, AU, and Raja, MAZ
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Artificial Intelligence & Image Processing - Abstract
© 2019, Springer-Verlag London Ltd., part of Springer Nature. In this paper, a novel application of biologically inspired computing paradigm is presented for solving initial value problem (IVP) of electric circuits based on nonlinear RL model by exploiting the competency of accurate modeling with feed forward artificial neural network (FF-ANN), global search efficacy of genetic algorithms (GA) and rapid local search with sequential quadratic programming (SQP). The fitness function for IVP of associated nonlinear RL circuit is developed by exploiting the approximation theory in mean squared error sense using an approximate FF-ANN model. Training of the networks is conducted by integrated computational heuristic based on GA-aided with SQP, i.e., GA-SQP. The designed methodology is evaluated to variants of nonlinear RL systems based on both AC and DC excitations for number of scenarios with different voltages, resistances and inductance parameters. The comparative studies of the proposed results with Adam’s numerical solutions in terms of various performance measures verify the accuracy of the scheme. Results of statistics based on Monte-Carlo simulations validate the accuracy, convergence, stability and robustness of the designed scheme for solving problem in nonlinear circuit theory.
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- 2019
9. Design of neuro-computing paradigms for nonlinear nanofluidic systems of MHD Jeffery–Hamel flow
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Mehmood, A, Haq, NU, Zameer, A, Ling, SH, and Raja, MAZ
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Chemical Engineering - Abstract
© 2018 Taiwan Institute of Chemical Engineers In this paper, a neuro-heuristic technique by incorporating artificial neural network models (NNMs) optimized with sequential quadratic programming (SQP) is proposed to solve the dynamics of nanofluidics system based on magneto-hydrodynamic (MHD) Jeffery–Hamel (JHF) problem involving nano-meterials. Original partial differential equations associated with MHD–JHF are transformed into third order ordinary differential equations based model. Furthermore, the transformed system has been implemented by the differential equation NNMs (DE-NNMs) which are constructed by a defined error function using log-sigmoid, radial basis and tan-sigmoid windowing kernels. The parameters of DE-NNM of nanofluidics system are optimized with SQP algorithm. To illustrate the performance of the proposed system, MHD–JHF models with base-fluid water mixed with alumina, silver and copper nanoparticles for different Hartman numbers, Reynolds numbers, angles of the channel and volume fractions with three different proposed DE-NNMs are designed to evaluate. For comparison purpose, the proposed results with reference numerical solutions of Adams solver illustrate their worth. Statistical inferences through different performance indices are given to demostrate the accuracy, stability and robustness of the stochastic solvers.
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- 2018
10. Multi-omics approaches to studying gastrointestinal microbiome in the context of precision medicine and machine learning
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Jingyue Wu, Stephanie S. Singleton, Urnisha Bhuiyan, Lori Krammer, and Raja Mazumder
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precision medicine ,machine learning ,gut microbiome ,metagenomics ,multi-omics ,sequencing ,Biology (General) ,QH301-705.5 - Abstract
The human gastrointestinal (gut) microbiome plays a critical role in maintaining host health and has been increasingly recognized as an important factor in precision medicine. High-throughput sequencing technologies have revolutionized -omics data generation, facilitating the characterization of the human gut microbiome with exceptional resolution. The analysis of various -omics data, including metatranscriptomics, metagenomics, glycomics, and metabolomics, holds potential for personalized therapies by revealing information about functional genes, microbial composition, glycans, and metabolites. This multi-omics approach has not only provided insights into the role of the gut microbiome in various diseases but has also facilitated the identification of microbial biomarkers for diagnosis, prognosis, and treatment. Machine learning algorithms have emerged as powerful tools for extracting meaningful insights from complex datasets, and more recently have been applied to metagenomics data via efficiently identifying microbial signatures, predicting disease states, and determining potential therapeutic targets. Despite these rapid advancements, several challenges remain, such as key knowledge gaps, algorithm selection, and bioinformatics software parametrization. In this mini-review, our primary focus is metagenomics, while recognizing that other -omics can enhance our understanding of the functional diversity of organisms and how they interact with the host. We aim to explore the current intersection of multi-omics, precision medicine, and machine learning in advancing our understanding of the gut microbiome. A multidisciplinary approach holds promise for improving patient outcomes in the era of precision medicine, as we unravel the intricate interactions between the microbiome and human health.
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- 2024
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11. Higher levels of Bifidobacteria and tumor necrosis factor in children with drug-resistant epilepsy are associated with anti-seizure response to the ketogenic diet
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Maria Dahlin, Stephanie S. Singleton, John A. David, Atin Basuchoudhary, Ronny Wickström, Raja Mazumder, and Stefanie Prast-Nielsen
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Gut microbiota ,Inflammation ,Epilepsy ,Ketogenic diet ,Bifidobacterium ,TNF ,Medicine ,Medicine (General) ,R5-920 - Abstract
Summary: Background: Recently, studies have suggested a role for the gut microbiota in epilepsy. Gut microbial changes during ketogenic diet (KD) treatment of drug-resistant epilepsy have been described. Inflammation is associated with certain types of epilepsy and specific inflammation markers decrease during KD. The gut microbiota plays an important role in the regulation of the immune system and inflammation. Methods: 28 children with drug-resistant epilepsy treated with the ketogenic diet were followed in this observational study. Fecal and serum samples were collected at baseline and three months after dietary intervention. Findings: We identified both gut microbial and inflammatory changes during treatment. KD had a general anti-inflammatory effect. Novel bioinformatics and machine learning approaches identified signatures of specific Bifidobacteria and TNF (tumor necrosis factor) associated with responders before starting KD. During KD, taxonomic and inflammatory profiles between responders and non-responders were more similar than at baseline. Interpretation: Our results suggest that children with drug-resistant epilepsy are more likely to benefit from KD treatment when specific Bifidobacteria and TNF are elevated. We here present a novel signature of interaction of the gut microbiota and the immune system associated with anti-epileptic response to KD treatment. This signature could be used as a prognostic biomarker to identify potential responders to KD before starting treatment. Our findings may also contribute to the development of new anti-seizure therapies by targeting specific components of the gut microbiota. Funding: This study was supported by the Swedish Brain Foundation, Margarethahemmet Society, Stiftelsen Sunnerdahls Handikappfond, Linnea & Josef Carlssons Foundation, and The McCormick Genomic & Proteomic Center.
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- 2022
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12. Solar Energy Dependent Supercapacitor System with ANFIS Controller for Auxiliary Load of Electric Vehicles
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Ataur Rahman, Kyaw Myo Aung, Sany Ihsan, Raja Mazuir Raja Ahsan Shah, Mansour Al Qubeissi, and Mohannad T. Aljarrah
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solar organic supercapacitor ,ANFIS ,electric vehicle ,solar energy ,renewable energy ,Technology - Abstract
Innovations are required for electric vehicles (EVs) to be lighter and more energy efficient due to the range anxiety issue. This article introduces an intelligent control of an organic structure solar supercapacitor (OSSC) for EVs to meet electrical load demands with solar renewable energy. A carbon fibre-reinforced polymer, nano zinc oxide (ZnO), and copper oxide (CuO) fillers have been used in the development of OSSC prototypes. The organic solar cell, electrical circuits, converter, controller, circuit breaker switch, and batteries were all integrated for the modelling of OSSCs. A carbon fibre (CF)-reinforced CuO-doped polymer was utilised to improve the concentration of electrons. The negative electrodes of the CF were strengthened with nano ZnO epoxy to increase the mobility of electrons as an n-type semiconductor (energy band gap 3.2–3.4 eV) and subsequently increased to 3.5 eV by adding 6% π-carbon. The electrodes of the CF were strengthened with epoxy-filled nano-CuO as a p-type semiconductor to facilitate bore/positive charging. They improve the conductivity of the OSSC. The OSSC power storage was controlled by an adaptive neuro-fuzzy intelligent system controller to meet the load demand of EVs and auxiliary battery charging. Moreover, a fully charged OSSC (solar irradiance = 1000 W/m2) produced 561 W·h/m2 to meet the vehicle load demand with 45 A of auxiliary battery charging current. Therefore, the OSSC can save 15% in energy efficiency and contribute to emission control. The integration of an OSSC with an EV battery can minimise the weight and capacity of the battery by 7.5% and 10%, respectively.
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- 2023
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13. Comparative Analysis of Battery Thermal Management System Using Biodiesel Fuels
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Mansour Al Qubeissi, Ayob Mahmoud, Moustafa Al-Damook, Ali Almshahy, Zinedine Khatir, Hakan Serhad Soyhan, and Raja Mazuir Raja Ahsan Shah
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Battery thermal management ,Biodiesel fuel ,Hybrid vehicle ,Li-ion battery ,Cooling ,Clean technology ,Technology - Abstract
Liquid fuel has been the main source of energy in internal combustion engines (ICE) for decades. However, lithium-ion batteries (LIB) have replaced ICE for environmentally friendly vehicles and reducing fossil fuel dependence. This paper focuses on the comparative analysis of battery thermal management system (BTMS) to maintain a working temperature in the range 15–35 °C and prevent thermal runaway and high temperature gradient, consequently increasing LIB lifecycle and performance. The proposed approach is to use biodiesel as the engine feed and coolant. A 3S2P LIB module is simulated using Ansys-Fluent CFD software tool. Four selective dielectric biodiesels are used as coolants, namely palm, karanja, jatropha, and mahua oils. In comparison to the conventional coolants in BTMS, mainly air and 3M Novec, biodiesel fuels have been proven as coolants to maintain LIB temperature within the optimum working range. For instance, the use of palm biodiesel can lightweight the BTMS by 43%, compared with 3M Novec, and likewise maintain BTMS performance.
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- 2023
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14. Streamlined Subpopulation, Subtype, and Recombination Analysis of HIV-1 Half-Genome Sequences Generated by High-Throughput Sequencing
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Bhavna Hora, Naila Gulzar, Yue Chen, Konstantinos Karagiannis, Fangping Cai, Chang Su, Krista Smith, Vahan Simonyan, Sharaf Ali Shah, Manzoor Ahmed, Ana M. Sanchez, Mars Stone, Myron S. Cohen, Thomas N. Denny, Raja Mazumder, and Feng Gao
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HIV-1 ,genetic recombination ,quasispecies ,sequencing ,Microbiology ,QR1-502 - Abstract
ABSTRACT High-throughput sequencing (HTS) has been widely used to characterize HIV-1 genome sequences. There are no algorithms currently that can directly determine genotype and quasispecies population using short HTS reads generated from long genome sequences without additional software. To establish a robust subpopulation, subtype, and recombination analysis workflow, we amplified the HIV-1 3′-half genome from plasma samples of 65 HIV-1-infected individuals and sequenced the entire amplicon (∼4,500 bp) by HTS. With direct analysis of raw reads using HIVE-hexahedron, we showed that 48% of samples harbored 2 to 13 subpopulations. We identified various subtypes (17 A1s, 4 Bs, 27 Cs, 6 CRF02_AGs, and 11 unique recombinant forms) and defined recombinant breakpoints of 10 recombinants. These results were validated with viral genome sequences generated by single genome sequencing (SGS) or the analysis of consensus sequence of the HTS reads. The HIVE-hexahedron workflow is more sensitive and accurate than just evaluating the consensus sequence and also more cost-effective than SGS. IMPORTANCE The highly recombinogenic nature of human immunodeficiency virus type 1 (HIV-1) leads to recombination and emergence of quasispecies. It is important to reliably identify subpopulations to understand the complexity of a viral population for drug resistance surveillance and vaccine development. High-throughput sequencing (HTS) provides improved resolution over Sanger sequencing for the analysis of heterogeneous viral subpopulations. However, current methods of analysis of HTS reads are unable to fully address accurate population reconstruction. Hence, there is a dire need for a more sensitive, accurate, user-friendly, and cost-effective method to analyze viral quasispecies. For this purpose, we have improved the HIVE-hexahedron algorithm that we previously developed with in silico short sequences to analyze raw HTS short reads. The significance of this study is that our standalone algorithm enables a streamlined analysis of quasispecies, subtype, and recombination patterns from long HIV-1 genome regions without the need of additional sequence analysis tools. Distinct viral populations and recombination patterns identified by HIVE-hexahedron are further validated by comparison with sequences obtained by single genome sequencing (SGS).
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- 2020
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15. Students as Designers of E-book for Authentic Assessment
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Raja Maznah Raja Hussain and Khalid Khamis Al Saadi
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Education - Abstract
Purpose – The purpose of this study is to examine the elements that determine students’ success as designers of an e-book by means of an authentic assessment in a collaborative learning environment. A total of 11 English Language Teaching (ELT) postgraduate students were involved as designers, writers and peer reviewers of the e-book project. Methodology – Data was gathered based on a qualitative methodological approach, via face-to-face discussions, WhatsApp groups, Moodle classes and reflections from students’ e-portfolios. The data was analyzed using content analysis procedures where it was read carefully to understand emerging themes. It was then coded and labeled manually in relation to the aims of the study and its theoretical framework. Findings – The analysis suggested that the students had positive experiences where they became self-publishers while engaged in designing learning experiences via integrating technology. The use of authentic assessments enabled them to develop teamwork, to become motivated and self-directed learners with autonomy. Significance – The outcome of this research will help course designers and program developers to integrate authentic assessments that are relevant to the current needs of students.
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- 2019
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16. Model-Based Energy Path Analysis of Tip-In Event in a 2WD Vehicle with Range-Extender Electric Powertrain Architecture
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Raja Mazuir Raja Ahsan Shah, Richard Peter Jones, Caizhen Cheng, Alessandro Picarelli, Abd Rashid Abd Aziz, and Mansour Al Qubeissi
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driveability ,low-frequency ,energy path analysis ,powertrain ,model-based engineering ,Technology - Abstract
Vehicle driveability is one of the important attributes in range-extender electric vehicles due to the electric motor torque characteristics at low-speed events. Physical vehicle prototypes are typically used to validate and rectify vehicle driveability attributes. However, this can be expensive and require several design iterations. In this paper, a model-based energy method to assess vehicle driveability is presented based on high-fidelity 49 degree-of-freedom powertrain and vehicle systems. Multibody dynamic components were built according to their true centre of gravity relative to the vehicle datum to provide an accurate system interaction. The work covered a frequency of less than 20 Hz. The results consist of the components’ frequency domination, which was structured and examined to identify the low-frequency resonances sensitivity based on different operating parameters such as road surface coefficients. An energy path method was also implemented on the dominant component by decoupling its compliances to study the effect on the vehicle driveability and low-frequency resonances. The outcomes of the research provided a good understanding of the interaction across the sub-systems levels. The powertrain rubber mounts were the dominant component that controlled the low-frequency resonances (
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- 2021
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17. Baseline human gut microbiota profile in healthy people and standard reporting template.
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Charles H King, Hiral Desai, Allison C Sylvetsky, Jonathan LoTempio, Shant Ayanyan, Jill Carrie, Keith A Crandall, Brian C Fochtman, Lusine Gasparyan, Naila Gulzar, Paul Howell, Najy Issa, Konstantinos Krampis, Lopa Mishra, Hiroki Morizono, Joseph R Pisegna, Shuyun Rao, Yao Ren, Vahan Simonyan, Krista Smith, Sharanjit VedBrat, Michael D Yao, and Raja Mazumder
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Medicine ,Science - Abstract
A comprehensive knowledge of the types and ratios of microbes that inhabit the healthy human gut is necessary before any kind of pre-clinical or clinical study can be performed that attempts to alter the microbiome to treat a condition or improve therapy outcome. To address this need we present an innovative scalable comprehensive analysis workflow, a healthy human reference microbiome list and abundance profile (GutFeelingKB), and a novel Fecal Biome Population Report (FecalBiome) with clinical applicability. GutFeelingKB provides a list of 157 organisms (8 phyla, 18 classes, 23 orders, 38 families, 59 genera and 109 species) that forms the baseline biome and therefore can be used as healthy controls for studies related to dysbiosis. This list can be expanded to 863 organisms if closely related proteomes are considered. The incorporation of microbiome science into routine clinical practice necessitates a standard report for comparison of an individual's microbiome to the growing knowledgebase of "normal" microbiome data. The FecalBiome and the underlying technology of GutFeelingKB address this need. The knowledgebase can be useful to regulatory agencies for the assessment of fecal transplant and other microbiome products, as it contains a list of organisms from healthy individuals. In addition to the list of organisms and their abundances, this study also generated a collection of assembled contiguous sequences (contigs) of metagenomics dark matter. In this study, metagenomic dark matter represents sequences that cannot be mapped to any known sequence but can be assembled into contigs of 10,000 nucleotides or higher. These sequences can be used to create primers to study potential novel organisms. All data is freely available from https://hive.biochemistry.gwu.edu/gfkb and NCBI's Short Read Archive.
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- 2019
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18. Investigation of somatic single nucleotide variations in human endogenous retrovirus elements and their potential association with cancer.
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Ting-Chia Chang, Santosh Goud, John Torcivia-Rodriguez, Yu Hu, Qing Pan, Robel Kahsay, Jonas Blomberg, and Raja Mazumder
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Medicine ,Science - Abstract
Human endogenous retroviruses (HERVs) have been investigated for potential links with human cancer. However, the distribution of somatic nucleotide variations in HERV elements has not been explored in detail. This study aims to identify HERV elements with an over-representation of somatic mutations (hot spots) in cancer patients. Four HERV elements with mutation hotspots were identified that overlap with exons of four human protein coding genes. These hotspots were identified based on the significant over-representation (p
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- 2019
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19. Enabling precision medicine via standard communication of HTS provenance, analysis, and results.
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Gil Alterovitz, Dennis Dean, Carole Goble, Michael R Crusoe, Stian Soiland-Reyes, Amanda Bell, Anais Hayes, Anita Suresh, Anjan Purkayastha, Charles H King, Dan Taylor, Elaine Johanson, Elaine E Thompson, Eric Donaldson, Hiroki Morizono, Hsinyi Tsang, Jeet K Vora, Jeremy Goecks, Jianchao Yao, Jonas S Almeida, Jonathon Keeney, KanakaDurga Addepalli, Konstantinos Krampis, Krista M Smith, Lydia Guo, Mark Walderhaug, Marco Schito, Matthew Ezewudo, Nuria Guimera, Paul Walsh, Robel Kahsay, Srikanth Gottipati, Timothy C Rodwell, Toby Bloom, Yuching Lai, Vahan Simonyan, and Raja Mazumder
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Biology (General) ,QH301-705.5 - Abstract
A personalized approach based on a patient's or pathogen's unique genomic sequence is the foundation of precision medicine. Genomic findings must be robust and reproducible, and experimental data capture should adhere to findable, accessible, interoperable, and reusable (FAIR) guiding principles. Moreover, effective precision medicine requires standardized reporting that extends beyond wet-lab procedures to computational methods. The BioCompute framework (https://w3id.org/biocompute/1.3.0) enables standardized reporting of genomic sequence data provenance, including provenance domain, usability domain, execution domain, verification kit, and error domain. This framework facilitates communication and promotes interoperability. Bioinformatics computation instances that employ the BioCompute framework are easily relayed, repeated if needed, and compared by scientists, regulators, test developers, and clinicians. Easing the burden of performing the aforementioned tasks greatly extends the range of practical application. Large clinical trials, precision medicine, and regulatory submissions require a set of agreed upon standards that ensures efficient communication and documentation of genomic analyses. The BioCompute paradigm and the resulting BioCompute Objects (BCOs) offer that standard and are freely accessible as a GitHub organization (https://github.com/biocompute-objects) following the "Open-Stand.org principles for collaborative open standards development." With high-throughput sequencing (HTS) studies communicated using a BCO, regulatory agencies (e.g., Food and Drug Administration [FDA]), diagnostic test developers, researchers, and clinicians can expand collaboration to drive innovation in precision medicine, potentially decreasing the time and cost associated with next-generation sequencing workflow exchange, reporting, and regulatory reviews.
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- 2018
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20. Designing Instruction for Active and Reflective Learners in the Flipped Classroom
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Sherina Shahnaz Mohamed Fauzi and Raja Maznah Raja Hussain
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Flipped classroom ,active-reflective learners ,Felder and Silverman’s learning style dimensions ,design-based research ,Education - Abstract
Purpose – This paper proposes a framework of instructional strategies that would facilitate active and reflective learning processes in the flipped classroom It is aimed at allowing one’s maximum potential to be reached regardless of any individual learning style. As tertiary classrooms increasingly needs to be as active and social as possible, the needs of the more introverted student could have been unintentionally overlooked. Therefore, the objective of this study was to produce an instructional design that could accommodate different learning styles and preferences in the flipped classroom. Method – A design-based research approach was employed in three phases (preliminary research, prototyping phase and assessment phase) in a flipped communication studies course of 24 students. The instructional design, based on a literature review on the flipped classroom and Felder and Silverman’s active-reflective learning style dimensions, was tested and refined over six iterative design cycles to produce a final design framework. Findings – Qualitative findings via observation showed that despite a learning curve, the finalized instructional design was able to facilitate different learning styles satisfactorily. Added benefits included learner empowerment, engagement, motivation and improved communication and thinking skills. Significance – As a design-based research, this study may be significant from the perspectives of both educational research and practice. Besides adding to the existent literature on different implementations of the flipped classroom, the proposed instructional design may serve as a practical guide for instructors who wish to flip their classrooms and spend face-to-face class time with their students on a more meaningful and personalized level.
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- 2016
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21. DiMeX: A Text Mining System for Mutation-Disease Association Extraction.
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A S M Ashique Mahmood, Tsung-Jung Wu, Raja Mazumder, and K Vijay-Shanker
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Medicine ,Science - Abstract
The number of published articles describing associations between mutations and diseases is increasing at a fast pace. There is a pressing need to gather such mutation-disease associations into public knowledge bases, but manual curation slows down the growth of such databases. We have addressed this problem by developing a text-mining system (DiMeX) to extract mutation to disease associations from publication abstracts. DiMeX consists of a series of natural language processing modules that preprocess input text and apply syntactic and semantic patterns to extract mutation-disease associations. DiMeX achieves high precision and recall with F-scores of 0.88, 0.91 and 0.89 when evaluated on three different datasets for mutation-disease associations. DiMeX includes a separate component that extracts mutation mentions in text and associates them with genes. This component has been also evaluated on different datasets and shown to achieve state-of-the-art performance. The results indicate that our system outperforms the existing mutation-disease association tools, addressing the low precision problems suffered by most approaches. DiMeX was applied on a large set of abstracts from Medline to extract mutation-disease associations, as well as other relevant information including patient/cohort size and population data. The results are stored in a database that can be queried and downloaded at http://biotm.cis.udel.edu/dimex/. We conclude that this high-throughput text-mining approach has the potential to significantly assist researchers and curators to enrich mutation databases.
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- 2016
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22. HIVE-hexagon: high-performance, parallelized sequence alignment for next-generation sequencing data analysis.
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Luis Santana-Quintero, Hayley Dingerdissen, Jean Thierry-Mieg, Raja Mazumder, and Vahan Simonyan
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Medicine ,Science - Abstract
Due to the size of Next-Generation Sequencing data, the computational challenge of sequence alignment has been vast. Inexact alignments can take up to 90% of total CPU time in bioinformatics pipelines. High-performance Integrated Virtual Environment (HIVE), a cloud-based environment optimized for storage and analysis of extra-large data, presents an algorithmic solution: the HIVE-hexagon DNA sequence aligner. HIVE-hexagon implements novel approaches to exploit both characteristics of sequence space and CPU, RAM and Input/Output (I/O) architecture to quickly compute accurate alignments. Key components of HIVE-hexagon include non-redundification and sorting of sequences; floating diagonals of linearized dynamic programming matrices; and consideration of cross-similarity to minimize computations.https://hive.biochemistry.gwu.edu/hive/
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- 2014
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23. Proteome-wide analysis of single-nucleotide variations in the N-glycosylation sequon of human genes.
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Raja Mazumder, Krishna Sudeep Morampudi, Mona Motwani, Sona Vasudevan, and Radoslav Goldman
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Medicine ,Science - Abstract
N-linked glycosylation is one of the most frequent post-translational modifications of proteins with a profound impact on their biological function. Besides other functions, N-linked glycosylation assists in protein folding, determines protein orientation at the cell surface, or protects proteins from proteases. The N-linked glycans attach to asparagines in the sequence context Asn-X-Ser/Thr, where X is any amino acid except proline. Any variation (e.g. non-synonymous single nucleotide polymorphism or mutation) that abolishes the N-glycosylation sequence motif will lead to the loss of a glycosylation site. On the other hand, variations causing a substitution that creates a new N-glycosylation sequence motif can result in the gain of glycosylation. Although the general importance of glycosylation is well known and acknowledged, the effect of variation on the actual glycoproteome of an organism is still mostly unknown. In this study, we focus on a comprehensive analysis of non-synonymous single nucleotide variations (nsSNV) that lead to either loss or gain of the N-glycosylation motif. We find that 1091 proteins have modified N-glycosylation sequons due to nsSNVs in the genome. Based on analysis of proteins that have a solved 3D structure at the site of variation, we find that 48% of the variations that lead to changes in glycosylation sites occur at the loop and bend regions of the proteins. Pathway and function enrichment analysis show that a significant number of proteins that gained or lost the glycosylation motif are involved in kinase activity, immune response, and blood coagulation. A structure-function analysis of a blood coagulation protein, antithrombin III and a protease, cathepsin D, showcases how a comprehensive study followed by structural analysis can help better understand the functional impact of the nsSNVs.
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- 2012
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24. Representative proteomes: a stable, scalable and unbiased proteome set for sequence analysis and functional annotation.
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Chuming Chen, Darren A Natale, Robert D Finn, Hongzhan Huang, Jian Zhang, Cathy H Wu, and Raja Mazumder
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Medicine ,Science - Abstract
The accelerating growth in the number of protein sequences taxes both the computational and manual resources needed to analyze them. One approach to dealing with this problem is to minimize the number of proteins subjected to such analysis in a way that minimizes loss of information. To this end we have developed a set of Representative Proteomes (RPs), each selected from a Representative Proteome Group (RPG) containing similar proteomes calculated based on co-membership in UniRef50 clusters. A Representative Proteome is the proteome that can best represent all the proteomes in its group in terms of the majority of the sequence space and information. RPs at 75%, 55%, 35% and 15% co-membership threshold (CMT) are provided to allow users to decrease or increase the granularity of the sequence space based on their requirements. We find that a CMT of 55% (RP55) most closely follows standard taxonomic classifications. Further analysis of this set reveals that sequence space is reduced by more than 80% relative to UniProtKB, while retaining both sequence diversity (over 95% of InterPro domains) and annotation information (93% of experimentally characterized proteins). All sets can be browsed and are available for sequence similarity searches and download at http://www.proteininformationresource.org/rps, while the set of 637 RPs determined using a 55% CMT are also available for text searches. Potential applications include sequence similarity searches, protein classification and targeted protein annotation and characterization.
- Published
- 2011
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25. Systems integration of biodefense omics data for analysis of pathogen-host interactions and identification of potential targets.
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Peter B McGarvey, Hongzhan Huang, Raja Mazumder, Jian Zhang, Yongxing Chen, Chengdong Zhang, Stephen Cammer, Rebecca Will, Margie Odle, Bruno Sobral, Margaret Moore, and Cathy H Wu
- Subjects
Medicine ,Science - Abstract
The NIAID (National Institute for Allergy and Infectious Diseases) Biodefense Proteomics program aims to identify targets for potential vaccines, therapeutics, and diagnostics for agents of concern in bioterrorism, including bacterial, parasitic, and viral pathogens. The program includes seven Proteomics Research Centers, generating diverse types of pathogen-host data, including mass spectrometry, microarray transcriptional profiles, protein interactions, protein structures and biological reagents. The Biodefense Resource Center (www.proteomicsresource.org) has developed a bioinformatics framework, employing a protein-centric approach to integrate and support mining and analysis of the large and heterogeneous data. Underlying this approach is a data warehouse with comprehensive protein + gene identifier and name mappings and annotations extracted from over 100 molecular databases. Value-added annotations are provided for key proteins from experimental findings using controlled vocabulary. The availability of pathogen and host omics data in an integrated framework allows global analysis of the data and comparisons across different experiments and organisms, as illustrated in several case studies presented here. (1) The identification of a hypothetical protein with differential gene and protein expressions in two host systems (mouse macrophage and human HeLa cells) infected by different bacterial (Bacillus anthracis and Salmonella typhimurium) and viral (orthopox) pathogens suggesting that this protein can be prioritized for additional analysis and functional characterization. (2) The analysis of a vaccinia-human protein interaction network supplemented with protein accumulation levels led to the identification of human Keratin, type II cytoskeletal 4 protein as a potential therapeutic target. (3) Comparison of complete genomes from pathogenic variants coupled with experimental information on complete proteomes allowed the identification and prioritization of ten potential diagnostic targets from Bacillus anthracis. The integrative analysis across data sets from multiple centers can reveal potential functional significance and hidden relationships between pathogen and host proteins, thereby providing a systems approach to basic understanding of pathogenicity and target identification.
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- 2009
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26. Structure-guided comparative analysis of proteins: principles, tools, and applications for predicting function.
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Raja Mazumder and Sona Vasudevan
- Subjects
Biology (General) ,QH301-705.5 - Published
- 2008
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27. Autoregressive exogenous neural structures for synthetic datasets of olive disease control model with fractional Grünwald-Letnikov solver.
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Anwar N, Raja MAZ, Kiani AK, Ahmad I, and Shoaib M
- Subjects
- Models, Biological, Olea microbiology, Plant Diseases microbiology, Plant Diseases prevention & control, Neural Networks, Computer
- Abstract
A fundamental element of the Mediterranean diet, olive oil is abundant in heart-healthy monounsaturated fats and antioxidants, lowering the risk of cardiovascular diseases. However, the olive oil industry confronts hurdles arising from olive tree diseases, despite the numerous health advantages associated with its consumption. In pursuit of research goals, this study endeavors to employ cutting-edge intelligent computing paradigms, specifically nonlinear autoregressive exogenous neural networks utilizing the Levenberg-Marquardt scheme (NNLMS), to comprehensively analyze the complex dynamic interactions of the fractional-order olive disease control (FO-ODC) model. In the realm of nonlinear fractional differential modeling, this study explores a system governed by four distinct populations: the branches and leaves of healthy olive trees, olive trees affected by a detrimental fungus, a pathogenic filamentous fungus causing infection and damage to olive leaves, and branches, and the microbial organisms residing in the phyllosphere. The research aims to scrutinize the transmission patterns of olive disease within this complex ecological framework. Employing the fractional Grünwald-Letnikov backward finite difference method, this study undertakes the generation of a synthetic dataset that accurately illustrates variations in several key parameters, including the rate of healthy leaf production, natural mortality rate, growth rate of beneficial fungi, nutrient acquisition rate by pathogens from infected leaves, the scaling factor governing food acquisition in their mutualistic relationship, and the rate at which leaves are adversely affected or degrade due to the influence of harmful fungi. In each iteration of the NNLMS application, the synthetic dataset is arbitrarily segmented into training, testing, and validation samples, facilitating the computation of an approximate solution for the dynamics embedded in the nonlinear FO-ODC model. The viability of the design approach is evaluated/assessed by consistently matching outcomes with reference solutions through numerous variations of the FO-ODC model. The reliability and efficiency of the design approach are measured using various measures, such as regression analysis, absolute errors, mean errors, autocorrelations and error histograms., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2025 Elsevier Ltd. All rights reserved.)
- Published
- 2025
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28. Dynamical analysis of hepatitis B virus through the stochastic and the deterministic model.
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Anwar N, Ahmad I, Javaid H, Kiani AK, Shoaib M, and Raja MAZ
- Abstract
In the current work, the deterministic hepatitis B virus epidemic (DHBVE) model and the stochastic hepatitis B virus epidemic (SHBVE) model are two nonlinear mathematical models that serve as the framework to illustrate and predict the dynamic virus behavior of hepatitis B. We employ an approximation based on the outcomes of the deterministic model to solve the stochastic model numerically. Euler-Maruyama method is employed to investigate the SHBVE model, whereas an explicit Runge-Kutta method is exploited to calculate the solution to the DHBVE model. Finally, comparisons between the DHBVE and SHBVE models' frameworks are presented.
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- 2025
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29. Generalized fractional optimization-based explainable lightweight CNN model for malaria disease classification.
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Khan ZA, Waqar M, Raja MJAA, Chaudhary NI, Khan ATMA, and Raja MAZ
- Subjects
- Humans, Deep Learning, Algorithms, Malaria, Falciparum, Plasmodium falciparum, Neural Networks, Computer, Malaria diagnosis
- Abstract
Over the past few decades, machine learning and deep learning (DL) have incredibly influenced a broader range of scientific disciplines. DL-based strategies have displayed superior performance in image processing compared to conventional standard methods, especially in healthcare settings. Among the biggest threats to global public health is the fast spread of malaria. The plasmodium falciparum infection, the disease origin causes the intestinal illness. Fortunately, advances in artificial intelligence techniques have made it possible to use visual data sets to quickly and effectively diagnose malaria which has also proven to be cost and time effective. In literature, several DL approaches have previously been used with good precision but suffer from computational inefficiency and interpretability. Therefore, this research proposes a generalized fractional order-based explainable lightweight convolutional neural network model to overcome these limitations. The fractional order optimization algorithms have proven worth in terms of estimation accuracy and convergence speed for different applications. The proposed fractional order optimizer-based model offers an improved solution to malaria disease diagnosis with a percentage accuracy of 95 % using the standard NIH dataset and outperforms the existing complex models concerning speed and effectiveness. The proposed fractionally optimized lightweight CNN model has shown substantial performance on the external MP-IDB dataset and M5 test set as well by achieving a generalized test accuracy of 92 % and 90.4 % which verifies the robustness and generalizability of the proposed solution under available circumstances. Moreover, the efficacy of the proposed lightweight architecture is endorsed through evaluation metrics of precision, recall, and F1-score., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 Elsevier Ltd. All rights reserved.)
- Published
- 2025
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30. A multi-layer neural network-based evaluation of MHD radiative heat transfer in Eyring-Powell fluid model.
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Alhazmi M, Shah Z, Raja MAZ, Albasheir NA, and Jawaid M
- Abstract
In the modern era, artificial intelligence (AI) has been applied as one of the transformative factors for scientific research in many fields that could provide new solutions to extremely complicated and complex physical models. In this paper, a multi-layer neural network combined with Bayesian regularization procedure (MNNs-BRP) is utilized to evaluate the model MHD radiative heat in non-uniform heating Eyring Powell fluid (EPF-MHD-RHS). The mixed convection parameter, Prandtl number, and heat emission or immersion parameter are studied in relation to momentum and heat transfer. To facilitate analysis, governing partial differential equations (PDEs) are converted into ordinary differential equations (ODEs) only with the aid of similarity transformations. From there, a dataset is created and later trained, tested, and validated by the MNNs-BRP model for efficient estimating of fluid models. The MNNs-BRP model is robust and demonstrates high accuracy, which compares well with the benchmark solutions. Performances of which are confirmed by metrics like error histograms, mean squared-error (MSE) check-ups, and regression analysis with MSEs all over the interval [10
-09 - 10-04 ] to ensure a sustained model. The obtained outcomes indicate that the model built and implemented utilizing a neural network offers precise performance ranging from 3.25E-13 to 5.41E-13 with a mean error of around 3.25E-13, 1.56E-11, 5.41E-13, 2.97E-12, 1.03E-11, 2.05E-12, 1.49E-12, and 5.01E-12, across eight different circumstances, suggesting improved capability and reliability of the developed predictive model. After careful review and analysis, we have found that the temperature of the fluid decreases with the increase of Prandl number, while an inverse result is noticed with heat emission. However, the velocity of the fluid have an increasing trend with increasing values of mixed convection parameter, and heat generation or absorption parameter. In contrast the velocity profile have a decreasing trend with the increasing values of magnetic field parameter and stratification parameter. This work on integrating AI into this classical fluid dynamics problem is an entirely new paradigm that involves a smart combination of computational strategies with advanced physical modeling techniques. Our investigation is not just raising the bar for predicting complex fluid dynamics but also showing how AI can truly transform the entire research domain of fluid mechanics and related scientific disciplines. All the numerical and graphical illustrations attained by employing the AI-based techniques authenticates the solution methodology for the evaluation of fluid dynamics problems., Competing Interests: The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (© 2025 The Authors.)- Published
- 2025
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31. Novel design of fractional cholesterol dynamics and drug concentrations model with analysis on machine predictive networks.
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Raja MJAA, Hassan SA, Chang CY, Raza H, Mubeen R, Masood Z, and Raja MAZ
- Subjects
- Humans, Cholesterol chemistry, Cholesterol blood, Neural Networks, Computer, Models, Biological
- Abstract
Within the intricate fabric of human physiology, cholesterol, a lipid present in cell membranes exerts a discernible effect on the concentration of the drug in human body that influence the aspects of drug pharmacokinetics. The objective of this work is to design a case study based fractional order cholesterol drug interaction model that encapsulates the nuanced dynamics inherent in the multifaceted human physiology with identification of essential variables including drug concentration K
sb and cholesterol level γ. The strength of nonlinear autoregressive with exogenous inputs (NARX) neural networks are exploited to predict the temporal dynamics that reveal the hidden intricacies and subtle patterns within the fractional model. Grünwald-Letnikov (GL) based fractional solver is used to generate the synthetic data, serving as a robust foundation for training, testing and validation of the NARX neural networks for different use cases of cholesterol drug interaction control strategies. A thorough comparative analysis based on exhaustive simulation unveiled a marginal distinction between the results obtained from NARX and the outcomes of fractal technique showing remarkably low MSE in the range of 10-12 . The strength of the designed methodology is further verified by using other performance metrics such as MSE, regression index, autocorrelation and cross correlation. The integration of genetic and genomic information tailor the model to address the unique characteristics of individual patient facilitating advancement in precision medicines., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 Elsevier Ltd. All rights reserved.)- Published
- 2025
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32. Synergistic modeling of hemorrhagic dengue fever: Passive immunity dynamics and time-delay neural network analysis.
- Author
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Raza H, Raja MJAA, Mubeen R, Masood Z, and Raja MAZ
- Subjects
- Humans, Time Factors, Neural Networks, Computer, Severe Dengue immunology, Severe Dengue epidemiology
- Abstract
Dengue fever poses a formidable epidemiological challenge, particularly for vulnerable groups such as infants. This research paper establishes a mathematical model to describe the dynamics of secondary immunity in infants against dengue hemorrhagic fever, who acquired primary immunity through maternal antibodies. The effect of passive immunity in the form of dengue immunoglobulin is analyzed for high-risk patients for different scenarios, including standard dengue infections, host with pre-existing immunity, delayed diagnosis or treatment, and end-stage dengue cases. Convergence analysis of the model is performed through disease free and disease endemic equilibrium points in terms of basic reproduction number R
0 along with local stability of disease-free equilibrium point. Adams numerical approach is utilized to simulate dengue disease/immunity interactions. A time delay exogenous neural network approach coupled with Levenberg-Marquardt optimization is designed to characterize, model and simulate these curated scenarios. Exhaustive neural network procedures determine the efficacy of the neural network approach by means of mean square error (MSE) loss charts, error correlation graphs, error histogram analysis and time-series prediction charts. The impeccable characterization of the dengue fever scenarios is supported by extremely low MSE results of the order 10-9 to 10-11 . To further showcase the competency of the neural network predictions, an exhaustive comparative study against the reference numerical solutions is illustrated with absolute errors in the range of 10-3 to 10-5 . The novel development of mathematical model coupled with time-delay exogenous neural networks significantly enhances our ability to understand and predict the intricate dengue hemorrhagic fever dynamics allowing for targeted interventions for such infectious disease and epidemiological scenarios., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2025 Elsevier Ltd. All rights reserved.)- Published
- 2025
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33. Intelligent computing framework to analyze the transmission risk of COVID-19: Meyer wavelet artificial neural networks.
- Author
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Nisar KS, Naz I, Raja MAZ, and Shoaib M
- Subjects
- Humans, SARS-CoV-2, Wavelet Analysis, Neural Networks, Computer, COVID-19 epidemiology, COVID-19 transmission, COVID-19 prevention & control, Algorithms
- Abstract
The optimum control methods for the epidemiology of the COVID-19 model are acknowledged using a novel advanced intelligent computing infrastructure that joins artificial neural networks with unsupervised learning-based optimizers i.e., Genetic Algorithms (GA) and sequential quadratic programming (SQP). Unsupervised learning strategy is provided which depends on the wavelet basis's sequential deconstruction of stochastic data. The weights or selection values of neural networks are utilizing cumulative algorithms of Meyer wavelet artificial neural networks (MWANNs) optimized with global search Genetic Algorithms (GAs) and Sequential Quadratic Programming (SQP), referred to as MWANNs-GA-SQP and the design technique is utilized to determine the COVID-19 model for five different scenarios employing different step sizes and input intervals. The findings of this research article examined that in order to minimize the total disease transmission at the lowest cost and complexity, safety, focused medical care, and exterior sterilization methods applicability. The provided data is validated through various graphical simulations, which surely authenticate the effectiveness and robustness of the proposed solver. The suggested solver, MWANNs-GA-SQP, is tested in a variety of circumstances to examine that how reliable, safe, and tolerant. Using the proposed MWANNs hubristic intelligent approach, an objective optimization function is created in feed forward neural networking to minimize the mean square error. An investigation of the hybrid GA-SQP is used to confirm the accuracy and dependability of the MWANNs model results. Mean absolute graphs have been constructed to assess the integrity and efficiency of the proposed methodology. The accuracy and reliability of the suggested method are demonstrated by constantly achieving maximum variables of analytical assessment criteria computed for a large appropriate variety of distinct trials., Competing Interests: Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 Elsevier Ltd. All rights reserved.)
- Published
- 2024
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34. Machine learning investigation of tuberculosis with medicine immunity impact.
- Author
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Qureshi H, Shah Z, Raja MAZ, Alshahrani MY, Khan WA, and Shoaib M
- Subjects
- Humans, Tuberculosis immunology, Tuberculosis microbiology, Tuberculosis drug therapy, Mycobacterium tuberculosis immunology, Extensively Drug-Resistant Tuberculosis immunology, Machine Learning, Antitubercular Agents therapeutic use, Antitubercular Agents pharmacology, Tuberculosis, Multidrug-Resistant immunology, Tuberculosis, Multidrug-Resistant drug therapy
- Abstract
Tuberculosis (T.B.) remains a prominent global cause of health challenges and death, exacerbated by drug-resistant strains such as multidrug-resistant tuberculosis MDR-TB and extensively drug-resistant tuberculosis XDR-TB. For an effective disease management strategy, it is crucial to understand the dynamics of T.B. infection and the impacts of treatment. In the present article, we employ AI-based machine learning techniques to investigate the immunity impact of medications. SEIPR epidemiological model is incorporated with MDR-TB for compartments susceptible to disease, exposed to risk, infected ones, preventive or resistant to initial treatment, and recovered or healed population. These masses' natural trends, effects, and interactions are formulated and described in the present study. Computations and stability analysis are conducted upon endemic and disease-free equilibria in the present model for their global scenario. Both numerical and AI-based nonlinear autoregressive exogenous NARX analyses are presented with incorporating immediate treatment and delay in treatment. This study shows that the active patients and MDR-TB, both strains, exist because of the absence of permanent immunity to T.B. Furthermore, patients who have recovered from tuberculosis may become susceptible again by losing their immunity and contributing to transmission again. This article aims to identify patterns and predictors of treatment success. The findings from this research can contribute to developing more effective tuberculosis interventions., Competing Interests: Declaration of competing interest I have no conflict of interest., (Copyright © 2024 Elsevier Inc. All rights reserved.)
- Published
- 2024
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35. Fractional gradient optimized explainable convolutional neural network for Alzheimer's disease diagnosis.
- Author
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Khan ZA, Waqar M, Chaudhary NI, Raja MJAA, Khan S, Khan FA, Chaudhary II, and Raja MAZ
- Abstract
Alzheimer's is one of the brain syndromes that steadily affects the brain memory. The early stage of Alzheimer's disease (AD) is referred to as mild cognitive impairment (MCI), and the growth of Alzheimer's is not certain in patients with MCI. The premature detection of Alzheimer's is crucial for maintaining healthy brain function and avoiding memory loss. Different multi-neural network architectures have been proposed by researchers for efficient and accurate AD detection. The absence of improved feature extraction mechanisms and unexplored efficient optimizers in complex benchmark architectures lead to an inefficient and inaccurate AD classification. Moreover, the standard convolutional neural network (CNN)-based architectures for Alzheimer's diagnosis lack interpretability in their predictions. An interpretable, simplified, yet effective deep learning model is required for the accurate classification of AD. In this study, a generalized fractional order-based CNN classifier with explainable artificial intelligence (XAI) capabilities is proposed for accurate, efficient, and interpretable classification of AD diagnosis. The proposed study (a) classifies AD accurately by incorporating unexplored pooling technique with enhanced feature extraction mechanism, (b) provides fractional order-based optimization approach for adaptive learning and fast convergence speed, and (c) suggests an interpretable method for proving the transparency of the model. The proposed model outperforms complex benchmark architectures with regard to accuracy using standard ADNI dataset. The proposed fractional order-based CNN classifier achieves an improved accuracy of 99 % as compared to the state-of-the-art models., Competing Interests: The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (© 2024 The Authors.)
- Published
- 2024
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36. Knacks of marine predator heuristics for distributed energy source-based power systems harmonics estimation.
- Author
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Cheema KM, Mehmood K, Chaudhary NI, Khan ZA, Raja MAZ, El-Sherbeeny AM, Nadeem A, and Ud Din Z
- Abstract
The power system incorporates renewable energy resources into the main utility grid, which possesses low or no inertia, and these systems generate harmonics due to the utilization of power electronic equipment. The precise and effective assessment of harmonic characteristics is necessary for maintaining power quality in distributed power systems. In this paper, the Marine Predator Algorithm (MPA) that mimics the hunting behavior of predators is exploited for harmonics estimation. The MPA utilizes the concepts of Levy and Brownian motions to replicate the movement of predators as they search for prey. The identification model for parameter estimation of harmonics is presented, and an objective function is developed that minimizes the difference between the real and predicted harmonic signals. The efficacy of the MPA is assessed for different levels of noise, population sizes, and iterations. Further, the comparison of the MPA is conducted with a recent metaheuristic of the Reptile Search Algorithm (RSA). The statistical analyses through sufficient autonomous executions established the accurate, stable, reliable and robust behavior of MPA for all variations. The substantial enhancement in estimation accuracy indicates that MPA holds great potential as a strategy for estimating harmonic parameters in distributed power systems., Competing Interests: The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (© 2024 The Author(s).)
- Published
- 2024
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37. Design of stochastic computational Levenberg Marquardt backpropagation-based technique to investigate temperature distribution of longitudinal moving porous fin.
- Author
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Ahmad I, Raja MAZ, Hussain SI, Ilyas H, and Mohayyuddin Z
- Abstract
The improvement of thermal exchange is of utmost interest in a wide range of engineering areas. The current study focuses on thermal evaluation involving natural radiation and convection in a fractionally arranged moving longitudinal fin model placed under a magnetic field. We implement the Levenberg Marquardt backpropagation (LMB) algorithm for investigating an innovative use of stochastic numerical computation for analyzing the efficiency of the temperature distribution in a porous moving longitudinal fin. The datasets for LMB have been created using a shooting approach for dynamic systems with varying ranges of different parameters. The validation, testing, and training processes are used to simulate networks using the LMB approach for diverse scenarios of moving porous fin models. The reliability of results is assessed based on the regression measures, absolute error, error histograms, mean square error, and other metrics for fuller numerical modeling of the suggested LMB to investigate the thermal efficiency and effectiveness of porous moving fin., (© 2024. The Author(s).)
- Published
- 2024
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38. Intelligent solution predictive networks for non-linear tumor-immune delayed model.
- Author
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Anwar N, Ahmad I, Kiani AK, Shoaib M, and Raja MAZ
- Subjects
- Humans, Nonlinear Dynamics, Models, Immunological, Models, Biological, Neoplasms immunology, Neural Networks, Computer
- Abstract
In this article, we analyze the dynamics of the non-linear tumor-immune delayed (TID) model illustrating the interaction among tumor cells and the immune system (cytotoxic T lymphocytes, T helper cells), where the delays portray the times required for molecule formation, cell growth, segregation, and transportation, among other factors by exploiting the knacks of soft computing paradigm utilizing neural networks with back propagation Levenberg Marquardt approach (NNLMA). The governing differential delayed system of non-linear TID, which comprised the densities of the tumor population, cytotoxic T lymphocytes and T helper cells, is represented by non-linear delay ordinary differential equations with three classes. The baseline data is formulated by exploiting the explicit Runge-Kutta method (RKM) by diverting the transmutation rate of T
c to Th of the Tc population, transmutation rate of Tc to Th of the Th population, eradication of tumor cells through Tc cells, eradication of tumor cells through Th cells, Tc cells' natural mortality rate, Th cells' natural mortality rate as well as time delay. The approximated solution of the non-linear TID model is determined by randomly subdividing the formulated data samples for training, testing, as well as validation sets in the network formulation and learning procedures. The strength, reliability, and efficacy of the designed NNLMA for solving non-linear TID model are endorsed by small/negligible absolute errors, error histogram studies, mean squared errors based convergence and close to optimal modeling index for regression measurements.- Published
- 2024
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39. Self correction fractional least mean square algorithm for application in digital beamforming.
- Author
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Shah SAA, Jan T, Shah SM, Raja MAZ, Zafar MH, and Haq SU
- Subjects
- Signal Processing, Computer-Assisted, Least-Squares Analysis, Computer Simulation, Models, Theoretical, Algorithms
- Abstract
Fractional order algorithms demonstrate superior efficacy in signal processing while retaining the same level of implementation simplicity as traditional algorithms. The self-adjusting dual-stage fractional order least mean square algorithm, denoted as LFLMS, is developed to expedite convergence, improve precision, and incurring only a slight increase in computational complexity. The initial segment employs the least mean square (LMS), succeeded by the fractional LMS (FLMS) approach in the subsequent stage. The latter multiplies the LMS output, with a replica of the steering vector (Ŕ) of the intended signal. Mathematical convergence analysis and the mathematical derivation of the proposed approach are provided. Its weight adjustment integrates the conventional integer ordered gradient with a fractional-ordered. Its effectiveness is gauged through the minimization of mean square error (MSE), and thorough comparisons with alternative methods are conducted across various parameters in simulations. Simulation results underscore the superior performance of LFLMS. Notably, the convergence rate of LFLMS surpasses that of LMS by 59%, accompanied by a 49% improvement in MSE relative to LMS. So it is concluded that the LFLMS approach is a suitable choice for next generation wireless networks, including Internet of Things, 6G, radars and satellite communication., Competing Interests: The authors have declared that no competing interests exist., (Copyright: © 2024 Shah et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.)
- Published
- 2024
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40. Design of a novel intelligent computing framework for predictive solutions of malaria propagation model.
- Author
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Nisar KS, Anjum MW, Raja MAZ, and Shoaib M
- Subjects
- Animals, Humans, Reproducibility of Results, Neural Networks, Computer, Models, Theoretical, Malaria epidemiology, Culicidae
- Abstract
The paper presents an innovative computational framework for predictive solutions for simulating the spread of malaria. The structure incorporates sophisticated computing methods to improve the reliability of predicting malaria outbreaks. The study strives to provide a strong and effective tool for forecasting the propagation of malaria via the use of an AI-based recurrent neural network (RNN). The model is classified into two groups, consisting of humans and mosquitoes. To develop the model, the traditional Ross-Macdonald model is expanded upon, allowing for a more comprehensive analysis of the intricate dynamics at play. To gain a deeper understanding of the extended Ross model, we employ RNN, treating it as an initial value problem involving a system of first-order ordinary differential equations, each representing one of the seven profiles. This method enables us to obtain valuable insights and elucidate the complexities inherent in the propagation of malaria. Mosquitoes and humans constitute the two cohorts encompassed within the exposition of the mathematical dynamical model. Human dynamics are comprised of individuals who are susceptible, exposed, infectious, and in recovery. The mosquito population, on the other hand, is divided into three categories: susceptible, exposed, and infected. For RNN, we used the input of 0 to 300 days with an interval length of 3 days. The evaluation of the precision and accuracy of the methodology is conducted by superimposing the estimated solution onto the numerical solution. In addition, the outcomes obtained from the RNN are examined, including regression analysis, assessment of error autocorrelation, examination of time series response plots, mean square error, error histogram, and absolute error. A reduced mean square error signifies that the model's estimates are more accurate. The result is consistent with acquiring an approximate absolute error close to zero, revealing the efficacy of the suggested strategy. This research presents a novel approach to solving the malaria propagation model using recurrent neural networks. Additionally, it examines the behavior of various profiles under varying initial conditions of the malaria propagation model, which consists of a system of ordinary differential equations., Competing Interests: The authors have declared that no competing interests exist., (Copyright: © 2024 Nisar et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.)
- Published
- 2024
- Full Text
- View/download PDF
41. Recurrent neural network for the dynamics of Zika virus spreading.
- Author
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Nisar KS, Anjum MW, Raja MAZ, and Shoaib M
- Abstract
Recurrent Neural Networks (RNNs), a type of machine learning technique, have recently drawn a lot of interest in numerous fields, including epidemiology. Implementing public health interventions in the field of epidemiology depends on efficient modeling and outbreak prediction. Because RNNs can capture sequential dependencies in data, they have become highly effective tools in this field. In this paper, the use of RNNs in epidemic modeling is examined, with a focus on the extent to which they can handle the inherent temporal dynamics in the spread of diseases. The mathematical representation of epidemics requires taking time-dependent variables into account, such as the rate at which infections spread and the long-term effects of interventions. The goal of this study is to use an intelligent computing solution based on RNNs to provide numerical performances and interpretations for the SEIR nonlinear system based on the propagation of the Zika virus (SEIRS-PZV) model. The four patient dynamics, namely susceptible patients S(y), exposed patients admitted in a hospital E(y), the fraction of infective individuals I(y), and recovered patients R(y), are represented by the epidemic version of the nonlinear system, or the SEIR model. SEIRS-PZV is represented by ordinary differential equations (ODEs), which are then solved by the Adams method using the Mathematica software to generate a dataset. The dataset was used as an output for the RNN to train the model and examine results such as regressions, correlations, error histograms, etc. For RNN, we used 100% to train the model with 15 hidden layers and a delay of 2 seconds. The input for the RNN is a time series sequence from 0 to 5, with a step size of 0.05. In the end, we compared the approximated solution with the exact solution by plotting them on the same graph and generating the absolute error plot for each of the 4 cases of SEIRS-PZV. Predictions made by the model appeared to be become more accurate when the mean squared error (MSE) decreased. An increased fit to the observed data was suggested by this decrease in the MSE, which suggested that the variance between the model's predicted values and the actual values was dropping. A minimal absolute error almost equal to zero was obtained, which further supports the usefulness of the suggested strategy. A small absolute error shows the degree to which the model's predictions matches the ground truth values, thus indicating the level of accuracy and precision for the model's output., Competing Interests: Conflict of Interest: The authors declare no conflict of interest., (© 2024 the Author(s), licensee AIMS Press.)
- Published
- 2024
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42. A framework for the analysis of skin sores disease using evolutionary intelligent computing approach.
- Author
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Shoaib M, Tabassum R, Nisar KS, and Raja MAZ
- Abstract
The most common and contagious bacterial skin disease i.e. skin sores (impetigo) mostly affects newborns and young children. On the face, particularly around the mouth and nose area, as well as on the hands and feet, it typically manifests as reddish sores. In this study, a neuro-evolutionary global algorithm is introduced to solve the dynamics of nonlinear skin sores disease model (SSDM) with the help of an artificial neural network. The global genetic algorithm is integrated with local sequential quadratic programming (GA-LSQP) to obtain the optimal solution for the proposed model. The designed differential model of skin sores disease is comprised of susceptible ( S ), infected ( I ), and recovered ( R ) categories. An activation function based neural network modeling is exploited for skin sores system through mean square error to achieve best trained weights. The integrated approach is validated and verified through the comparison of results of reference Adam strategy with absolute error analysis. The absolute error results give accuracy of around 10 - 11 to 10 - 5 , demonstrating the worthiness and efficacy of proposed algorithm. Additionally, statistical investigations in form of mean absolute deviation, root mean square error, and Theil's inequality coefficient are exhibited to prove the consistency, stability, and convergence criteria of the integrated technique. The accuracy of the proposed solver has been examined from the smaller values of minimum, median, maximum, mean, semi-interquartile range, and standard deviation, which lie around 10 - 12 to 10 - 2 .
- Published
- 2024
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43. A scale conjugate neural network approach for the fractional schistosomiasis disease system.
- Author
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Sabir Z, Bhat SA, Raja MAZ, Baleanu D, Amin F, and Wahab HA
- Abstract
This study presents the numerical solutions of the fractional schistosomiasis disease model (SDM) using the supervised neural networks (SNNs) and the computational scaled conjugate gradient (SCG), i.e. SNNs-SCG. The fractional derivatives are used for the precise outcomes of the fractional SDM. The preliminary fractional SDM is categorized as: uninfected, infected with schistosomiasis, recovered through infection, expose and susceptible to this virus. The accurateness of the SNNs-SCG is performed to solve three different scenarios based on the fractional SDM with synthetic data obtained with fractional Adams scheme (FAS). The generated data of FAS is used to execute SNNs-SCG scheme with 81% for training samples, 12% for testing and 7% for validation or authorization. The correctness of SNNs-SCG approach is perceived by the comparison with reference FAS results. The performances based on the error histograms (EHs), absolute error, MSE, regression, state transitions (STs) and correlation accomplish the accuracy, competence, and finesse of the SNNs-SCG scheme.
- Published
- 2023
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44. Intelligent computing for MHD radiative Von Kármán Casson nanofluid along Darcy-Fochheimer medium with activation energy.
- Author
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Raja MAZ, Nisar KS, Shoaib M, Abukhaled M, and Riaz A
- Abstract
The impact of activation energy in chemical processes, heat radiations, and temperature gradients on non-Darcian steady MHD convective Casson nanofluid flows (NMHD-CCNF) over a radial elongated circular cylinder is investigated in this study. The network of partial differential equations (PDEs) for NMHD-CCNF is developed using the modified Buongiorno framework, and the network of controlling PDEs is then transformed into ordinary differential equations (ODEs) utilizing the Von Karman method. Finally, the resulting non-linear ODEs are computed using the ND-solve approach to produce sets of data to assess the proposed model's skills, which can then be handled using the Bayesian Regularization technique of artificial neural networks (BRT-ANN). A novel stochastic computing-based application is being developed to evaluate the importance of NMHD-CCNF across a spinning disc that is radially stretched. The novelty and significance of results for better understanding, clarity, and highlighting the innovative contributions and significance of the proposed scheme. Further, to check the validity of the defined results for NMHD-CCNF, error charts, validation, and mean squared error suggestions are employed. The impact of multiple physical parameters on concentration, radial and tangential velocities, and temperature profiles is shown via tables and figures. Additionally, the results demonstrate that as the Forchheimer number, Casson nanofluid parameter, magnetic parameter, and porosity parameter are strengthened, the radial and rotational nanofluid mobility drops dramatically. The stretching parameter, on the other hand, has a parallel developmental trend. The heat generation parameter, the thermophoresis process, the thermal radiation parameter, and the Brownian motion of nanoparticles can all be increased to give thermal enhancement. On the other side, with larger estimates in thermophoresis parameters and the activation energy, there is a noticeable increase in the concentration profile., Competing Interests: The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (© 2023 The Authors.)
- Published
- 2023
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45. Numerical performances through artificial neural networks for solving the vector-borne disease with lifelong immunity.
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Nur Akkilic A, Sabir Z, Raja MAZ, Bulut H, Sadat R, and Ali MR
- Subjects
- Reproducibility of Results, Nonlinear Dynamics, Algorithms, Neural Networks, Computer
- Abstract
The current study is related to solve a nonlinear vector-borne disease with a lifelong immunity model (VDLIM) by designing a computational stochastic framework using the strength of artificial Levenberg-Marquardt backpropagation neural network (ALMBNN). The detail of the nonlinear VDLIM is provided along with its five classes. The numerical performances of the results have been presented using the ALMBNN by taking three different cases to solve the nonlinear VDLIM using the training, sample data, testing and authentication. The selection of the statics is selected as 80% for training, while the data for both testing and validations is applied 10%. The results of the nonlinear VDLIM are performed using the ALMBNN and the correctness of the scheme is observed to compare the results with the reference solutions. The calculated performance of the results to solve the nonlinear VDLIM is applied for the reduction of the mean square error. In order to check the competence, efficacy, exactness and reliability of the ALMBNN, the numerical investigations using the proportional procedures based on the MSE, correlation, regression and error histograms are presented.
- Published
- 2023
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46. Neuro-Evolutionary Framework for Design Optimization of Two-Phase Transducer with Genetic Algorithms.
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Zameer A, Naz S, Raja MAZ, Hafeez J, and Ali N
- Abstract
Multilayer piezocomposite transducers are widely used in many applications where broad bandwidth is required for tracking and detection purposes. However, it is difficult to operate these multilayer transducers efficiently under frequencies of 100 kHz. Therefore, this work presents the modeling and optimization of a five-layer piezocomposite transducer with ten variables of nonuniform layer thicknesses and different volume fractions by exploiting the strength of the genetic algorithm (GA) with a one-dimensional model (ODM). The ODM executes matrix manipulation by resolving wave equations and produces mechanical output in the form of pressure and electrical impedance. The product of gain and bandwidth is the required function to be maximized in this multi-objective and multivariate optimization problem, which is a challenging task having ten variables. Converting it into the minimization problem, the reciprocal of the gain-bandwidth product is considered. The total thickness is adjusted to keep the central frequency at approximately 50-60 kHz. Piezocomposite transducers with three active materials, PZT5h, PZT4d, PMN-PT, and CY1301 polymer, as passive materials were designed, simulated, and statistically evaluated. The results show significant improvement in gain bandwidth compared to previous existing techniques.
- Published
- 2023
- Full Text
- View/download PDF
47. Design of Intelligent Neuro-Supervised Networks for Brain Electrical Activity Rhythms of Parkinson's Disease Model.
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Mukhtar R, Chang CY, Raja MAZ, and Chaudhary NI
- Abstract
The objective of this paper is to present a novel design of intelligent neuro-supervised networks (INSNs) in order to study the dynamics of a mathematical model for Parkinson's disease illness (PDI), governed with three differential classes to represent the rhythms of brain electrical activity measurements at different locations in the cerebral cortex. The proposed INSNs are constructed by exploiting the knacks of multilayer structure neural networks back-propagated with the Levenberg-Marquardt (LM) and Bayesian regularization (BR) optimization approaches. The reference data for the grids of input and the target samples of INSNs were formulated with a reliable numerical solver via the Adams method for sundry scenarios of PDI models by way of variation of sensor locations in order to measure the impact of the rhythms of brain electrical activity. The designed INSNs for both backpropagation procedures were implemented on created datasets segmented arbitrarily into training, testing, and validation samples by optimization of mean squared error based fitness function. Comparison of outcomes on the basis of exhaustive simulations of proposed INSNs via both LM and BR methodologies was conducted with reference solutions of PDI models by means of learning curves on MSE, adaptive control parameters of algorithms, absolute error, histogram error plots, and regression index. The outcomes endorse the efficacy of both INSNs solvers for different scenarios in PDI models, but the accuracy of the BR-based method is relatively superior, albeit at the cost of slightly more computations.
- Published
- 2023
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48. Variants of Chaotic Grey Wolf Heuristic for Robust Identification of Control Autoregressive Model.
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Mehmood K, Chaudhary NI, Khan ZA, Cheema KM, and Raja MAZ
- Abstract
In this article, a chaotic computing paradigm is investigated for the parameter estimation of the autoregressive exogenous (ARX) model by exploiting the optimization knacks of an improved chaotic grey wolf optimizer (ICGWO). The identification problem is formulated by defining a mean square error-based fitness function between true and estimated responses of the ARX system. The decision parameters of the ARX model are calculated by ICGWO for various populations, generations, and noise levels. The comparative performance analyses with standard counterparts indicate the worth of the ICGWO for ARX model identification, while the statistical analyses endorse the efficacy of the proposed chaotic scheme in terms of accuracy, robustness, and reliability.
- Published
- 2023
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49. Variational iteration method along with intelligent computing system for the radiated flow of electrically conductive viscous fluid through porous medium.
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Shoaib M, Shah FA, Nisar KS, Raja MAZ, Haq EU, Abbasi AZ, Hassan QMU, Al-Harbi N, and Abdel-Aty AH
- Abstract
This article aims to investigate the analytical nature and approximate solution of the radiated flow of electrically conductive viscous fluid into a porous medium with slip effects (RFECVF). In order to build acceptable accurate solutions for RFECVF, this study presented an efficient Levenberg-Marquardt technique of artificial neural networks (LMT-ANNs) approach. One of its fastest back-propagation algorithms for nonlinear lowest latency is the LMT. To turn a quasi-network of PDEs expressing RFECVF into a set of standards, the appropriate adjustments are required. During the flow, the boundary is assumed to be convective. The flow and heat transfer are governed by partial differential equations, and similarity transform is the main tool to convert it into a coupled nonlinear system of ODEs. The usefulness of the constructed LMT-ANNs for such a modelled issue is demonstrated by the best promising algebraic outputs in the E-03 to E-08 range, as well as error histogram and regression analysis measures. Mu is a controller that oversees the entire training procedure. The LMT-ANNs mainly focuses on the higher accuracy of nonlinear systems. Analytical results for the improved boundary layer ODEs are produced using the Variational Iteration Method, a tried-and-true method (VIM). The Lagrange Multiplier is a powerful tool in the suggested method for reducing the amount of computing required. Further, a tabular comparison is provided to demonstrate the usefulness of this study. The final results of the Variational Iteration Method (VIM) in MATLAB have accurately depicted the physical characteristics of a number of parameters, including Eckert, Prandtl, Magnetic, and Thermal radiation parameters., Competing Interests: The authors declare no competing interests., (© 2023 The Authors. Published by Elsevier Ltd.)
- Published
- 2023
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50. A design of neuro-computational approach for double-diffusive natural convection nanofluid flow.
- Author
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Shoaib M, Tabassum R, Nisar KS, Raja MAZ, Fatima N, Al-Harbi N, and Abdel-Aty AH
- Abstract
The artificial intelligence based neural networking with Back Propagated Levenberg-Marquardt method (NN-BPLMM) is developed to explore the modeling of double-diffusive free convection nanofluid flow considering suction/injection, Brownian motion and thermophoresis effects past an inclined permeable sheet implanted in a porous medium. By applying suitable transformations, the PDEs presenting the proposed problem are transformed into ordinary ones. A reference dataset of NN-BPLMM is fabricated for multiple influential variants of the model representing scenarios by applying Lobatto III-A numerical technique. The reference data is trained through testing, training and validation operations to optimize and compare the approximated solution with desired (standard) results. The reliability, steadiness, capability and robustness of NN-BPLMM is authenticated through MSE based fitness curves, error through histograms, regression illustrations and absolute errors. The investigations suggest that the temperature enhances with the upsurge in thermophoresis impact during suction and decays for injection, whereas increasing Brownian effect decreases the temperature in the presence of wall suction and reverse behavior is seen for injection. The best measures of performance in form of mean square errors are attained as 7.1058 × 10 - 10 , 2.9262 × 10 - 10 , 1.1652 × 10 - 08 , 1.5657 × 10 - 10 and 5.5652 × 10 - 10 against 969, 824, 467, 277 and 650 iterations. The comparative study signifies the authenticity of proposed solver with the absolute errors about 10
-7 to 10-3 for all influential parameters results., Competing Interests: The authors declare no competing interests., (© 2023 The Authors.)- Published
- 2023
- Full Text
- View/download PDF
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