38 results on '"Ramagiri S"'
Search Results
2. Mutations in dynamin-related protein result in gross changes in mitochondrial morphology and affect synaptic vesicle recycling at the Drosophila neuromuscular junction
- Author
-
Rikhy, R., Kamat, S., Ramagiri, S., Sriram, V., and Krishnan, K. S.
- Published
- 2007
3. Dynamic instability characteristics of rolling element bearings
- Author
-
Panat, S, Puliyeri, B, Ramagiri, S, and Sarkar, A
- Subjects
Mathieu equation ,parametric excitation ,bearing - Abstract
The dynamics of bearing is a classical problem in machinery vibration. It is well known that rolling element bearings are susceptible to large vibration response at suitable parameter values arising due to instability. In the present work, we formulate the governing equations of motion of rolling element bearings. Herein, the rolling elements are modeled as lumped spring elements. With odd number of rolling elements, due to asymmetric effects of the bearing crosssection a parametric excitation effect is introduced in the system of governing equations. Further, due to the load zone effect this system represents a non-smooth dynamical system. The parametric stiffness term flips its sign depending on the sign of the displacement response. As such the governing equations of the system resemble the classical asymmetric Mathieu equation. In the literature, the method of Lyapunov-like exponents has been used to determine the stability boundaries of the asymmetric Mathieu equation. Herein, a positive Lyapunov-like exponent indicates instability whereas a stable response manifests as a negative Lyapunov-like exponent. In the present work, we use this method in detecting the stability and instability characteristics over the different bearing parameters. Stability diagrams are presented which can aid the designers and the user of the bearing in confirming the stability and instability zone. The method is validated by numerically integrating the governing equations. It is verified through numerical analysis that parameter combinations associated with an unstable zone manifest an exponential growth in response. Similarly, the parameter combinations associated with stable zone of the stability diagram shows bounded response.
- Published
- 2017
4. Dynamic instability characteristics of rolling element bearings
- Author
-
Panat, S. (Sreedath), Puliyeri, B. (Baldev), Ramagiri, S. (Srinath), Sarkar, A. (Abhijit), Panat, S. (Sreedath), Puliyeri, B. (Baldev), Ramagiri, S. (Srinath), and Sarkar, A. (Abhijit)
- Abstract
The dynamics of bearing is a classical problem in machinery vibration. It is well known that rolling element bearings are susceptible to large vibration response at suitable parameter values arising due to instability. In the present work, we formulate the governing equations of motion of rolling element bearings. Herein, the rolling elements are modeled as lumped spring elements. With odd number of rolling elements, due to asymmetric effects of the bearing crosssection a parametric excitation effect is introduced in the system of governing equations. Further, due to the load zone effect this system represents a non-smooth dynamical system. The parametric stiffness term flips its sign depending on the sign of the displacement response. As such the governing equations of the system resemble the classical asymmetric Mathieu equation. In the literature, the method of Lyapunov-like exponents has been used to determine the stability boundaries of the asymmetric Mathieu equation. Herein, a positive Lyapunov-like exponent indicates instability whereas a stable response manifests as a negative Lyapunov-like exponent. In the present work, we use this method in detecting the stability and instability characteristics over the different bearing parameters. Stability diagrams are presented which can aid the designers and the user of the bearing in confirming the stability and instability zone. The method is validated by numerically integrating the governing equations. It is verified through numerical analysis that parameter combinations associated with an unstable zone manifest an exponential growth in response. Similarly, the parameter combinations associated with stable zone of the stability diagram shows bounded response.
- Published
- 2017
5. Flocculation of SDS micelles with Al3+: SANS, SAXS and TEM study
- Author
-
Nadaf, R., primary, Kutty, B., additional, Narayanan, J., additional, Ramagiri, S. V., additional, Kumar, S., additional, Aswal, V. K., additional, Bellare, J. R., additional, and Goyal, P. S., additional
- Published
- 2015
- Full Text
- View/download PDF
6. Ginseng Metabolism Study using Hybrid Quadrupole Linear Ion Trap (QqLIT)
- Author
-
Lu, EI, primary, Hou, J, additional, Zhong, K, additional, Hu, J, additional, Barrett, B, additional, Sakuma, T, additional, Seto, C, additional, Ellis, R, additional, and Ramagiri, S, additional
- Published
- 2012
- Full Text
- View/download PDF
7. Pharmacometabonomics of Ginseng Extracts on Vascular Injury Induced by Chronic Homocysteine Treatment.
- Author
-
Lui, E, primary, Hou, J, additional, Zhong, K, additional, Hu, J, additional, Barrett, B, additional, Sakuma, T, additional, Seto, C, additional, Ellis, R, additional, and Ramagiri, S, additional
- Published
- 2012
- Full Text
- View/download PDF
8. Qualitative and Quantitative analysis of Complex Herbal Components in Rat Plasma and Intestine using High Resolution Accurate Mass Spectrometry
- Author
-
Lui, E, primary, Hou, J, additional, Zhong, K, additional, Hu, J, additional, Barrett, B, additional, Sakuma, T, additional, Seto, C, additional, Ellis, R, additional, and Ramagiri, S, additional
- Published
- 2012
- Full Text
- View/download PDF
9. Real-time multi-view human action recognition using a wireless camera network
- Author
-
Ramagiri, S., primary, Kavi, R., additional, and Kulathumani, V., additional
- Published
- 2011
- Full Text
- View/download PDF
10. Positioning of Platinum Nanoparticles In Cation-exchange Membrane By Galvanic Reaction
- Author
-
Kumar, Rakesh, primary, Pandey, A. K., additional, Ramagiri, S. V., additional, Bellare, J. R., additional, Goswami, A., additional, Aswal, Dinesh K., additional, and Debnath, Anil K., additional
- Published
- 2010
- Full Text
- View/download PDF
11. Stability Study of Propoxur (Baygon) in Whole Blood and Urine Stored at Varying Temperature Conditions
- Author
-
Ramagiri, S., primary, Kosanam, H., additional, and Prakash, P. K. S., additional
- Published
- 2006
- Full Text
- View/download PDF
12. Flocculation of SDS Micelles with Al3+: SANS, SAXS and TEM Study.
- Author
-
Nadaf, R., Kutty, B., Narayanan, J., Ramagiri, S. V., Kumar, S., Aswal, V. K., Bellare, J. R., and Goyal, P. S.
- Subjects
FLOCCULATION ,MICELLES ,ALUMINUM compounds ,METAL solubility ,HEATING of metals - Abstract
Micellar solutions of SDS/Al(NO
3 )3 exhibit three phases. In our earlier work we have shown that SDS micelles are spherical in phase I and rod-like in phase III. This paper deals with structure of SDS/Al(NO3 )3 solutions in phase II as studied using SANS, SAXS and Cryo-TEM. It is shown that SDS micelles flocculate to form aggregates of SDS micelles. It is further shown that above aggregates tend to disintegrate on heating. [ABSTRACT FROM AUTHOR]- Published
- 2015
- Full Text
- View/download PDF
13. Positioning of Platinum Nanoparticles In Cation-exchange Membrane By Galvanic Reaction.
- Author
-
Kumar, Rakesh, Pandey, A. K., Ramagiri, S. V., Bellare, J. R., and Goswami, A.
- Subjects
NANOPARTICLES ,PLATINUM ,ION-permeable membranes ,GALVANIZING ,CHEMICAL reactions ,COLLOIDAL silver ,FLUORIMETRY ,TRANSMISSION electron microscopy - Abstract
Platinum nanoparticles were formed at the surface of the poly (perfluorosulfonic) acid membrane (Nafion-117) by the galvanic reaction of PtCl
6 2- ions with Ag nanoparticles positioned near the surface of the membrane. The reduction with BH4 - ions produced Ag nanoparticles (15±4 nm size) mostly positioned near the surface of membrane due to Donnan exclusion of co-ions (BH4 - ). Energy Dispersive X-ray Fluorescence (EDXRF) analysis of the membrane indicated that galvanic reaction proceeded quantitatively. Transmission Electron Microscopy (TEM) of the cross-sections of membrane samples indicated that the spherical Pt nanoparticles having size 2 to 8 nm were mostly located near the surface of the membrane. The positioning of Pt nanoparticles at surface of the membrane is important for using nano-composite in catalytical application. [ABSTRACT FROM AUTHOR]- Published
- 2010
- Full Text
- View/download PDF
14. Postnatal meningeal CSF transport is primarily mediated by the arachnoid and pia maters and is not altered after intraventricular hemorrhage-posthemorrhagic hydrocephalus.
- Author
-
Pan S, Koleske JP, Koller GM, Halupnik GL, Alli AO, Koneru S, DeFreitas D, Ramagiri S, and Strahle JM
- Subjects
- Animals, Rats, Pia Mater, Gold, Meninges, Arachnoid, Cerebral Hemorrhage, Metal Nanoparticles, Hydrocephalus
- Abstract
Background: CSF has long been accepted to circulate throughout the subarachnoid space, which lies between the arachnoid and pia maters of the meninges. How the CSF interacts with the cellular components of the developing postnatal meninges including the dura, arachnoid, and pia of both the meninges at the surface of the brain and the intracranial meninges, prior to its eventual efflux from the cranium and spine, is less understood. Here, we characterize small and large CSF solute distribution patterns along the intracranial and surface meninges in neonatal rodents and compare our findings to meningeal CSF solute distribution in a rodent model of intraventricular hemorrhage-posthemorrhagic hydrocephalus. We also examine CSF solute interactions with the tela choroidea and its pial invaginations into the choroid plexuses of the lateral, third, and fourth ventricles., Methods: 1.9-nm gold nanoparticles, 15-nm gold nanoparticles, or 3 kDa Red Dextran Tetramethylrhodamine constituted in aCSF were infused into the right lateral ventricle of P7 rats to track CSF circulation. 10 min post-1.9-nm gold nanoparticle and Red Dextran Tetramethylrhodamine injection and 4 h post-15-nm gold nanoparticle injection, animals were sacrificed and brains harvested for histologic analysis to identify CSF tracer localization in the cranial and spine meninges and choroid plexus. Spinal dura and leptomeninges (arachnoid and pia) wholemounts were also evaluated., Results: There was significantly less CSF tracer distribution in the dura compared to the arachnoid and pia maters in neonatal rodents. Both small and large CSF tracers were transported intracranially to the arachnoid and pia mater of the perimesencephalic cisterns and tela choroidea, but not the falx cerebri. CSF tracers followed a similar distribution pattern in the spinal meninges. In the choroid plexus, there was large CSF tracer distribution in the apical surface of epithelial cells, and small CSF tracer along the basolateral surface. There were no significant differences in tracer intensity in the intracranial meninges of control vs. intraventricular hemorrhage-posthemorrhagic hydrocephalus (PHH) rodents, indicating preserved meningeal transport in the setting of PHH., Conclusions: Differential CSF tracer handling by the meninges suggests that there are distinct roles for CSF handling between the arachnoid-pia and dura maters in the developing brain. Similarly, differences in apical vs. luminal choroid plexus CSF handling may provide insight into particle-size dependent CSF transport at the CSF-choroid plexus border., (© 2024. The Author(s).)
- Published
- 2024
- Full Text
- View/download PDF
15. Deferoxamine Prevents Neonatal Posthemorrhagic Hydrocephalus Through Choroid Plexus-Mediated Iron Clearance.
- Author
-
Ramagiri S, Pan S, DeFreitas D, Yang PH, Raval DK, Wozniak DF, Esakky P, and Strahle JM
- Subjects
- Infant, Newborn, Humans, Animals, Choroid Plexus metabolism, Choroid Plexus pathology, Iron, Deferoxamine therapeutic use, Infant, Premature, Cerebral Hemorrhage metabolism, Hemoglobins metabolism, Hydrocephalus etiology, Hydrocephalus prevention & control, Hydrocephalus pathology, Aquaporins metabolism
- Abstract
Posthemorrhagic hydrocephalus occurs in up to 30% of infants with high-grade intraventricular hemorrhage and is associated with the worst neurocognitive outcomes in preterm infants. The mechanisms of posthemorrhagic hydrocephalus after intraventricular hemorrhage are unknown; however, CSF levels of iron metabolic pathway proteins including hemoglobin have been implicated in its pathogenesis. Here, we develop an animal model of intraventricular hemorrhage using intraventricular injection of hemoglobin at post-natal day 4 that results in acute and chronic hydrocephalus, pathologic choroid plexus iron accumulation, and subsequent choroid plexus injury at post-natal days 5, 7, and 15. This model also results in increased expression of aquaporin-1, Na
+ /K+ /Cl- cotransporter 1, and Na+ /K+ /ATPase on the apical surface of the choroid plexus 24 h post-intraventricular hemorrhage. We use this model to evaluate a clinically relevant treatment strategy for the prevention of neurological sequelae after intraventricular hemorrhage using intraventricular administration of the iron chelator deferoxamine at the time of hemorrhage. Deferoxamine treatment prevented posthemorrhagic hydrocephalus for up to 11 days after intraventricular hemorrhage and prevented the development of sensorimotor gating deficits. In addition, deferoxamine treatment facilitated acute iron clearance through the choroid plexus and subsequently reduced choroid plexus iron levels at 24 h with reversal of hemoglobin-induced aquaporin-1 upregulation on the apical surface of the choroid plexus. Intraventricular administration of deferoxamine at the time of intraventricular hemorrhage may be a clinically relevant treatment strategy for preventing posthemorrhagic hydrocephalus and likely acts through promoting iron clearance through the choroid plexus to prevent hemoglobin-induced injury., (© 2022. The Author(s), under exclusive licence to Springer Science+Business Media, LLC, part of Springer Nature.)- Published
- 2023
- Full Text
- View/download PDF
16. The effect of Dnaaf5 gene dosage on primary ciliary dyskinesia phenotypes.
- Author
-
Horani A, Gupta DK, Xu J, Xu H, Carmen Puga-Molina LD, Santi CM, Ramagiri S, Brennan SK, Pan J, Koenitzer JR, Huang T, Hyland RM, Gunsten SP, Tzeng SC, Strahle JM, Mill P, Mahjoub MR, Dutcher SK, and Brody SL
- Subjects
- Animals, Humans, Proteomics, Mutation, Phenotype, Proteins genetics, Gene Dosage, Kartagener Syndrome genetics
- Abstract
DNAAF5 is a dynein motor assembly factor associated with the autosomal heterogenic recessive condition of motile cilia, primary ciliary dyskinesia (PCD). The effects of allele heterozygosity on motile cilia function are unknown. We used CRISPR-Cas9 genome editing in mice to recreate a human missense variant identified in patients with mild PCD and a second, frameshift-null deletion in Dnaaf5. Litters with Dnaaf5 heteroallelic variants showed distinct missense and null gene dosage effects. Homozygosity for the null Dnaaf5 alleles was embryonic lethal. Compound heterozygous animals with the missense and null alleles showed severe disease manifesting as hydrocephalus and early lethality. However, animals homozygous for the missense mutation had improved survival, with partially preserved cilia function and motor assembly observed by ultrastructure analysis. Notably, the same variant alleles exhibited divergent cilia function across different multiciliated tissues. Proteomic analysis of isolated airway cilia from mutant mice revealed reduction in some axonemal regulatory and structural proteins not previously reported in DNAAF5 variants. Transcriptional analysis of mouse and human mutant cells showed increased expression of genes coding for axonemal proteins. These findings suggest allele-specific and tissue-specific molecular requirements for cilia motor assembly that may affect disease phenotypes and clinical trajectory in motile ciliopathies.
- Published
- 2023
- Full Text
- View/download PDF
17. Gold nanoparticle-enhanced X-ray microtomography of the rodent reveals region-specific cerebrospinal fluid circulation in the brain.
- Author
-
Pan S, Yang PH, DeFreitas D, Ramagiri S, Bayguinov PO, Hacker CD, Snyder AZ, Wilborn J, Huang H, Koller GM, Raval DK, Halupnik GL, Sviben S, Achilefu S, Tang R, Haller G, Quirk JD, Fitzpatrick JAJ, Esakky P, and Strahle JM
- Subjects
- Animals, Gold metabolism, Rodentia, X-Ray Microtomography, Brain metabolism, Cerebrospinal Fluid metabolism, Metal Nanoparticles, Hydrocephalus
- Abstract
Cerebrospinal fluid (CSF) is essential for the development and function of the central nervous system (CNS). However, the brain and its interstitium have largely been thought of as a single entity through which CSF circulates, and it is not known whether specific cell populations within the CNS preferentially interact with the CSF. Here, we develop a technique for CSF tracking, gold nanoparticle-enhanced X-ray microtomography, to achieve micrometer-scale resolution visualization of CSF circulation patterns during development. Using this method and subsequent histological analysis in rodents, we identify previously uncharacterized CSF pathways from the subarachnoid space (particularly the basal cisterns) that mediate CSF-parenchymal interactions involving 24 functional-anatomic cell groupings in the brain and spinal cord. CSF distribution to these areas is largely restricted to early development and is altered in posthemorrhagic hydrocephalus. Our study also presents particle size-dependent CSF circulation patterns through the CNS including interaction between neurons and small CSF tracers, but not large CSF tracers. These findings have implications for understanding the biological basis of normal brain development and the pathogenesis of a broad range of disease states, including hydrocephalus., (© 2023. The Author(s).)
- Published
- 2023
- Full Text
- View/download PDF
18. Modeling Neonatal Intraventricular Hemorrhage through Intraventricular Injection of Hemoglobin.
- Author
-
Miller BA, Pan S, Yang PH, Wang C, Trout AL, DeFreitas D, Ramagiri S, Olson SD, and Strahle JM
- Subjects
- Animals, Cerebral Hemorrhage diagnostic imaging, Cerebral Hemorrhage etiology, Hemoglobins, Injections, Intraventricular, Rats, Brain Injuries complications, Hydrocephalus etiology, Hydrocephalus pathology
- Abstract
Neonatal intraventricular hemorrhage (IVH) is a common consequence of premature birth and leads to brain injury, posthemorrhagic hydrocephalus (PHH), and lifelong neurological deficits. While PHH can be treated by temporary and permanent cerebrospinal fluid (CSF) diversion procedures (ventricular reservoir and ventriculoperitoneal shunt, respectively), there are no pharmacological strategies to prevent or treat IVH-induced brain injury and hydrocephalus. Animal models are needed to better understand the pathophysiology of IVH and test pharmacological treatments. While there are existing models of neonatal IVH, those that reliably result in hydrocephalus are often limited by the necessity for large-volume injections, which may complicate modeling of the pathology or introduce variability in the clinical phenotype observed. Recent clinical studies have implicated hemoglobin and ferritin in causing ventricular enlargement after IVH. Here, we develop a straightforward animal model that mimics the clinical phenotype of PHH utilizing small-volume intraventricular injections of the blood breakdown product hemoglobin. In addition to reliably inducing ventricular enlargement and hydrocephalus, this model results in white matter injury, inflammation, and immune cell infiltration in periventricular and white matter regions. This paper describes this clinically relevant, simple method for modeling IVH-PHH in neonatal rats using intraventricular injection and presents methods for quantifying ventricle size post injection.
- Published
- 2022
- Full Text
- View/download PDF
19. Protective effect of remote limb post conditioning via upregulation of heme oxygenase-1/BDNF pathway in rat model of cerebral ischemic reperfusion injury.
- Author
-
Ramagiri S and Taliyan R
- Subjects
- Acetylcholinesterase metabolism, Animals, Antioxidants metabolism, Association Learning, Brain Ischemia metabolism, Brain Ischemia pathology, Disease Models, Animal, Femoral Artery, Heme Oxygenase-1 antagonists & inhibitors, Hippocampus metabolism, Hippocampus pathology, Male, Memory, Motor Activity, Neurons metabolism, Neurons pathology, Random Allocation, Rats, Wistar, Reperfusion Injury metabolism, Reperfusion Injury pathology, Tumor Necrosis Factor-alpha metabolism, Up-Regulation, Brain Ischemia therapy, Brain-Derived Neurotrophic Factor metabolism, Heme Oxygenase-1 metabolism, Ischemic Postconditioning, Reperfusion Injury therapy
- Abstract
Aim: Remote ischemic post conditioning (RIPOC) has shown to be neuroprotective against cerebral ischemic reperfusion (I/R) injury. However, the RIPOC protection against I/R injury induced cognitive abnormalities still remains elusive. Abundant evidence from earlier studies highlighted the role of heme oxygenase-1 (HO-1) in neuronal survival in various neurodegenerative disorders. Thus, in the present study, we investigated the possible contribution of HO-1 in RIPOC mediated neuroprotection against cerebral I/R injury and associated cognitive deficits., Experimental Procedure: Rats were subjected to bilateral common carotid occlusion model to induce I/R injury. RIPOC was achieved by 3 cycles of ischemia (10min) and reperfusion (10min) of bilateral femoral artery. Behavioral, biochemical and histological evaluation was performed. The levels of Tumor Necrosis Factor (TNF-α) were estimated. To further confirm molecular mechanism, HO-1 and Brain Derived Neurotrophic Factor (BDNF) activities were estimated., Results: Ischemic injury resulted in severe neurological deficits and cognitive abnormalities besides elevating oxidative stress and neuroinflammation. RIPOC intervention improved the behavioral parameters and anti-oxidant content. In addition, RIPOC decreased the levels of oxidative markers and pro-inflammatory cytokines like TNF-α. Moreover, RIPOC significantly upregulated HO-1 and neurotrophin including BDNF. Marked reduction in hippocampal structural abnormalities were observed with RIPOC intervention. SnPP treatment reversed the protective effects of RIPOC., Conclusion: These findings suggest that the neuroprotective effects of RIPOC during early reperfusion may be mediated through upregulation of HO-1 and BDNF, as the conditioning stimulus was found ineffective in presence of HO-1 inhibitor., (Copyright © 2017 Elsevier B.V. All rights reserved.)
- Published
- 2017
- Full Text
- View/download PDF
20. Remote limb ischemic post conditioning during early reperfusion alleviates cerebral ischemic reperfusion injury via GSK-3β/CREB/ BDNF pathway.
- Author
-
Ramagiri S and Taliyan R
- Subjects
- Animals, Behavior, Animal, Cognition, Hippocampus pathology, Male, Oxidative Stress, Rats, Rats, Wistar, Reperfusion Injury metabolism, Reperfusion Injury pathology, Reperfusion Injury therapy, Brain-Derived Neurotrophic Factor metabolism, Cyclic AMP Response Element-Binding Protein metabolism, Extremities blood supply, Glycogen Synthase Kinase 3 beta metabolism, Ischemic Postconditioning, Reperfusion adverse effects
- Abstract
Remote limb ischemic post conditioning (RIPOC) has been reported to attenuate cerebral ischemic reperfusion (I/R) injury, while the molecular mechanisms remain elusive. Various studies have highlighted the involvement of glycogen synthase kinase (GSK-3β) in cerebral I/R injury and cognitive disorders. Hence, the present study was designed to explore the role of GSK-3β and its downstream regulators in RIPOC mediated neuroprotection against cerebral I/R injury and associated cognitive impairment. Male Wistar rats are randomly assigned into four groups: Sham, bilateral common carotid arteries occlusion (BCCAO), RIPOC and BCCAO+RIPOC. BCCAO was achieved by transient occlusion of bilateral common carotid arteries for 20min, followed by reperfusion. Non-invasive RIPOC was induced by 3 cycles each of 10min occlusion and reperfusion of both femoral arteries by using tourniquets, during early reperfusion phase. A battery of behavioral and cognitive tests were performed. Biochemical estimation of oxidative markers, anti-oxidants and pro-inflammatory markers were estimated. Levels of GSK-3β, CREB and BDNF were estimated to confirm the molecular mechanism. Hippocampal structural abnormalities were confirmed by H and E staining. The neurobehavioral analysis revealed that neurological and cognitive deficits caused by BCCAO, were reduced by RIPOC intervention. Meanwhile, the results of biochemical tests suggested that RIPOC attenuates the BCCAO induced oxidative damage, neuroinflammation and hippocampal structural abnormalities. Further, RIPOC prevented the elevation of BCCAO induced GSK-3β. RIPOC exerts neuroprotective effect against I/R injury, putatively by attenuating GSK-3β expression and upregulating the levels of CREB and BDNF., (Copyright © 2017 Elsevier B.V. All rights reserved.)
- Published
- 2017
- Full Text
- View/download PDF
21. Delayed neuroprotection against cerebral ischemia reperfusion injury: putative role of BDNF and GSK-3β.
- Author
-
Taliyan R and Ramagiri S
- Subjects
- Animals, Brain Ischemia genetics, Brain Ischemia metabolism, Brain Ischemia pathology, Brain-Derived Neurotrophic Factor genetics, Gene Expression Regulation drug effects, Glycogen Synthase Kinase 3 beta genetics, Humans, Infarction, Middle Cerebral Artery, Male, Neuroprotective Agents administration & dosage, Oxidative Stress drug effects, Rats, Reperfusion Injury metabolism, Tumor Necrosis Factor-alpha genetics, Brain-Derived Neurotrophic Factor biosynthesis, Glycogen Synthase Kinase 3 beta biosynthesis, Lithium administration & dosage, Reperfusion Injury genetics, Tumor Necrosis Factor-alpha biosynthesis
- Abstract
Aim: Numerous studies have demonstrated the possible neuroprotective role of lithium treatment against neurological disorders. However, the role of lithium in delayed phase of neuronal death against focal ischemia has not been explored. Therefore, the present study was designed to investigate the effect and molecular mechanisms of post-lithium treatment against cerebral ischemic reperfusion (I/R) injury and associated cognitive deficits in rats., Methods: I/R injury was induced by right middle cerebral artery occlusion and lithium (40 and 60 mg/kg) were given intraperitoneally, 24 h after the insult and continued for 1 week with 24-h interval. Using Lasser Doppler, cerebral blood flow was monitored before, during and after MCAO induction. Besides behavioral, biochemical, and histological evaluation, levels of tumor necrosis factor alpha (TNF-α) and brain-derived neurotrophic factor (BDNF) were also estimated., Results: I/R injury resulted in significant elevation of neurological deficits, oxidative stress, neuroinflammation, and cognitive impairments. We found that lithium injection, 24 h after I/R-injury continued for 1 week, dose dependently prevented behavioral abnormality and cognitive impairments. Moreover, lithium attenuated the levels of oxidative stress and pro-inflammatory-cytokines TNF-α level. Further, lithium treatments significantly reduced neuronal damage and augmented healthy neuronal count and improved neuronal density in hippocampus. These neuroprotective effects of delayed lithium treatment were associated with upregulation of neurotrophic factor BDNF levels., Conclusion: Delayed lithium treatment provides neuroprotection against cerebral I/R injury and associated cognitive deficits by upregulating BDNF expression that opens a new avenue to treat I/R injury even after active cell death.
- Published
- 2016
- Full Text
- View/download PDF
22. Hybridizing LBA with LC-MS/MS: the new norm for biologics quantification.
- Author
-
Ramagiri S and Moore I
- Subjects
- Antibodies, Monoclonal analysis, Antibodies, Monoclonal metabolism, Half-Life, Immunoassay, Peptides analysis, Peptides metabolism, Proteins analysis, Proteins metabolism, Chromatography, High Pressure Liquid, Ligands, Tandem Mass Spectrometry
- Published
- 2016
- Full Text
- View/download PDF
23. Neuroprotective effect of hydroxy safflor yellow A against cerebral ischemia-reperfusion injury in rats: putative role of mPTP.
- Author
-
Ramagiri S and Taliyan R
- Subjects
- Animals, Brain Ischemia pathology, Chalcone pharmacology, Cognition Disorders drug therapy, Disease Models, Animal, Free Radical Scavengers pharmacology, Infarction, Middle Cerebral Artery, Male, Maze Learning drug effects, Mitochondrial Membrane Transport Proteins drug effects, Mitochondrial Permeability Transition Pore, Oxidative Stress drug effects, Rats, Rats, Wistar, Reperfusion Injury pathology, Tumor Necrosis Factor-alpha metabolism, Brain Ischemia drug therapy, Chalcone analogs & derivatives, Neuroprotective Agents pharmacology, Quinones pharmacology, Reperfusion Injury drug therapy
- Abstract
Background: Hydroxy safflor yellow A (HSYA) has been translated clinically for cardiovascular diseases. HSYA is also greatly acknowledged for its protective effects against cerebral ischemic-reperfusion (I/R) injury. Although the precise mechanism of cerebral I/R injury is not fully understood, oxygen-derived free radicals and mitochondrial permeability transition pore (mPTP) opening during I/R injury are widely recognized as an important contributor to neuronal injury. Thus, we speculated that the neuroprotective effects of HSYA against cerebral I/R injury may be associated with mPTP modulation., Methods: Induction of I/R injury was achieved by 60 min of middle cerebral artery occlusion, followed by reperfusion for 24 h. For behavior and cognitive assessment, neurological scoring (NSS), rotarod, and Y-maze task were performed. Oxidative damage was measured in terms of markers such as malondialdehyde, reduced glutathione, and catalase levels and cerebral infarct volumes were quantified using 2,3,5-triphenyl tetrazolinium chloride staining. I/R injury-induced inflammation was determined using tumor necrosis factor-α (TNF-α) levels., Results: Animals exposed to I/R injury showed neurological severity, functional and cognitive disability, elevated oxidative markers, and TNF-α levels along with large infarct volumes. HSYA treatment during onset of reperfusion ameliorated performance in NSS, rotarod and Y-maze attenuated oxidative damage, TNF-α levels, and infarction rate. However, treatment with carboxyatractyloside, an mPTP opener, 20 min before HSYA, attenuated the protective effect of HSYA., Conclusions: Our study confirmed that protective effect of HSYA may be conferred through its free radical scavenger action followed by inhibiting the opening of mPTP during reperfusion and HSYA might act as a promising therapeutic agent against cerebral I/R injury.
- Published
- 2016
- Full Text
- View/download PDF
24. Histone deacetylase inhibitor, trichostatin A, improves learning and memory in high-fat diet-induced cognitive deficits in mice.
- Author
-
Sharma S, Taliyan R, and Ramagiri S
- Subjects
- Animals, Blood Glucose metabolism, Brain drug effects, Brain metabolism, Brain physiology, Brain-Derived Neurotrophic Factor metabolism, Cholesterol blood, Cognition Disorders etiology, Diet, High-Fat adverse effects, Histone Deacetylase Inhibitors pharmacology, Hydroxamic Acids pharmacology, Male, Metabolic Syndrome etiology, Mice, Oxidative Stress, Triglycerides blood, Cognition Disorders drug therapy, Histone Deacetylase Inhibitors therapeutic use, Hydroxamic Acids therapeutic use, Maze Learning, Memory, Metabolic Syndrome drug therapy
- Abstract
Metabolic syndrome is increasingly recognized for its effects on cognitive health. Recent studies have highlighted the role of histone deacetylases (HDACs) in metabolic syndrome and cognitive functions. The present study was designed to investigate the possible therapeutic role of a HDAC inhibitor, trichostatin A (TSA), in cognitive impairment associated with metabolic syndrome. To ascertain the mechanisms involved, we fed mice with high-fat diet (HFD) for 4 weeks and examined changes in behavioral and biochemical/oxidative stress markers. Mice subjected to HFD exhibited characteristic features of metabolic disorder, viz., hyperglycemia, hypertriglyceridemia, hypercholesterolemia, and lower high-density lipoprotein (HDL) cholesterol levels. Moreover, these mice showed severe deficits in learning and memory as assessed by the Morris water maze and passive avoidance tasks along with elevated oxidative stress and inflammatory markers in brain homogenates. The observed changes occurred concurrently with reduced brain-derived neurotrophic factor (BDNF). In contrast, the mice treated with the HDAC inhibitor, TSA (0.5 and 1 mg/kg, i.p.), showed a significant and dose-dependent reduction in serum glucose, triglycerides, and total cholesterol along with improvement in HDL-cholesterol levels and learning and memory performance. TSA treatment also results in alleviation of oxidative stress and neuroinflammatory markers. Moreover, TSA significantly augmented the BDNF levels in HFD-fed mice. Thus, based upon these observations, it may be suggested that HDAC inhibition could be a novel therapeutic strategy to combat cognitive impairment associated with metabolic syndrome.
- Published
- 2015
- Full Text
- View/download PDF
25. Enhancing cubosome functionality by coating with a single layer of poly-ε-lysine.
- Author
-
Deshpande S, Venugopal E, Ramagiri S, Bellare JR, Kumaraswamy G, and Singh N
- Subjects
- Cell Survival drug effects, Drug Delivery Systems, HeLa Cells, Humans, Nanoparticles therapeutic use, Naproxen pharmacology, Scattering, Small Angle, Surface Properties, X-Ray Diffraction, Coated Materials, Biocompatible chemistry, Nanoparticles chemistry, Polylysine chemistry
- Abstract
We report the preparation and characterization of monoolein cubosomes that can be easily surface modified through adsorption of a single layer of cationic poly-ε-lysine. Poly-ε-lysine coated cubosomes show remarkable stability in serum solution, are nontoxic and, are readily internalized by HeLa cells. The poly-ε-lysine coating provides chemical handles for further bioconjugation of the cubosome surface. We also demonstrate that the initial release rate of a hydrophilic drug, Naproxen sodium, from the cubosomes is retarded with just a single layer of polymer. Interestingly, cubosomes loaded with Naproxen sodium, recently shown to have anticancer properties, cause more apoptosis in HeLa cells when compared to free unencapsulated drug.
- Published
- 2014
- Full Text
- View/download PDF
26. Application of combined omics platforms to accelerate biomedical discovery in diabesity.
- Author
-
Kurland IJ, Accili D, Burant C, Fischer SM, Kahn BB, Newgard CB, Ramagiri S, Ronnett GV, Ryals JA, Sanders M, Shambaugh J, Shockcor J, and Gross SS
- Subjects
- Adult, Aged, Animals, Cardiovascular Diseases etiology, Cardiovascular Diseases metabolism, Comorbidity, Diabetes Mellitus, Type 2 drug therapy, Diabetes Mellitus, Type 2 epidemiology, Diabetes Mellitus, Type 2 etiology, Disease Models, Animal, Drug Discovery, Energy Metabolism, Female, Glucose metabolism, Humans, Insulin Resistance, Lipid Metabolism, Male, Metabolic Syndrome complications, Metabolic Syndrome metabolism, Mice, Middle Aged, Models, Biological, Molecular Targeted Therapy, Obesity complications, Obesity epidemiology, Obesity metabolism, Prediabetic State epidemiology, Prediabetic State metabolism, Prevalence, Research Design, Computational Biology, Diabetes Mellitus, Type 2 metabolism
- Abstract
Diabesity has become a popular term to describe the specific form of diabetes that develops late in life and is associated with obesity. While there is a correlation between diabetes and obesity, the association is not universally predictive. Defining the metabolic characteristics of obesity that lead to diabetes, and how obese individuals who develop diabetes different from those who do not, are important goals. The use of large-scale omics analyses (e.g., metabolomic, proteomic, transcriptomic, and lipidomic) of diabetes and obesity may help to identify new targets to treat these conditions. This report discusses how various types of omics data can be integrated to shed light on the changes in metabolism that occur in obesity and diabetes., (© 2013 New York Academy of Sciences.)
- Published
- 2013
- Full Text
- View/download PDF
27. Recognizing the potential benefits and pitfalls of high-resolution MS.
- Author
-
Campbell JL and Ramagiri S
- Subjects
- Humans, Sensitivity and Specificity, Biomarkers analysis, High-Throughput Screening Assays, Mass Spectrometry, Proteomics
- Published
- 2013
- Full Text
- View/download PDF
28. Large molecule bioanalysis using Q-TOF without predigestion and its data processing challenges.
- Author
-
Ramagiri S and Garofolo F
- Subjects
- Animals, Antimicrobial Cationic Peptides chemistry, Calcitonin chemistry, Hepcidins, Humans, Mucin 5AC analysis, Mucin 5AC blood, Muramidase chemistry, Peptides chemistry, Rats, Swine, Antimicrobial Cationic Peptides analysis, Calcitonin analysis, Chemistry Techniques, Analytical, Mass Spectrometry, Mucin 5AC chemistry, Muramidase analysis, Peptides analysis
- Abstract
Background: Recent developments in LC-MS have turned it into a viable and valid alternative to ligand-binding assays. Large molecule bioanalysis by LC-MS is generally performed by tryptic digestion, purification and detection of one or more small signature peptides. High-resolution MS instruments offer quantification of intact small proteins or peptides and are able to increase the selectivity, while maintaining sensitivity., Results: Unlike multiple reaction monitoring assays, several factors affecting data processing were presented and the optimal parameters to consider during quantification method building were also demonstrated. MUC5AC-13 (MW 1709.8 Da), human hepcidin/LEAP-1 (MW 2797.4 Da), porcine calcitonin (MW 3604 Da) and chicken lysozyme (MW 14.3 kDa) were selected as model compounds and the possibility of intact peptide and small protein quantification, without tryptic digestion, was demonstrated., Conclusion: Selectivity and sensitivity were improved using different scan modes, such as TOF-MS and TOF-MS/MS.
- Published
- 2012
- Full Text
- View/download PDF
29. It is time for a paradigm shift in drug discovery bioanalysis: from SRM to HRMS.
- Author
-
Ramanathan R, Jemal M, Ramagiri S, Xia YQ, Humpreys WG, Olah T, and Korfmacher WA
- Subjects
- Drug Discovery instrumentation, Drug Discovery standards, Drug Discovery trends, Reproducibility of Results, Sensitivity and Specificity, Chromatography, High Pressure Liquid methods, Drug Discovery methods, Tandem Mass Spectrometry methods
- Abstract
It can be argued that the last true paradigm shift in the bioanalytical (BA) arena was the shift from high-performance liquid chromatography (HPLC) with ultraviolet (UV) detection to HPLC with tandem mass spectrometry (MS/MS) detection after the commercialization of the triple quadrupole mass spectrometer in the 1990s. HPLC-MS/MS analysis based on selected reaction monitoring (SRM) has become the gold standard for BA assays and is used by all the major pharmaceutical companies for the quantitative analysis of new drug entities (NCEs) as part of the new drug discovery and development process. While LC-MS/MS continues to be the best tool for drug discovery bioanalysis, a new paradigm involving high-resolution mass spectrometry (HRMS) and ultrahigh-pressure liquid chromatography (uHPLC) is starting to make inroads into the pharmaceutical industry. The ability to collect full scan spectra, with excellent mass accuracy, mass resolution, 10-250 ms scan speeds and no NCE-related MS parameter optimization, makes the uHPLC-HRMS techniques suitable for quantitative analysis of NCEs while preserving maximum qualitative information about other drug-related and endogenous components such as metabolites, degradants, biomarkers and formulation materials. In this perspective article, we provide some insight into the evolution of the hybrid quadrupole-time-of-flight (Qq-TOF) mass spectrometer and propose some of the desirable specifications that such HRMS systems should have to be integrated into the drug discovery bioanalytical workflow for performing integrated qualitative and quantitative bioanalysis of drugs and related components., (Copyright © 2011 John Wiley & Sons, Ltd.)
- Published
- 2011
- Full Text
- View/download PDF
30. Development of an LC-MS/MS assay to determine plasma pharmacokinetics of the radioprotectant octadecenyl thiophosphate (OTP) in monkeys.
- Author
-
Kosanam H, Ma F, He H, Ramagiri S, Gududuru V, Tigyi GJ, Van Rompay K, Miller DD, and Yates CR
- Subjects
- Animals, Butanols chemistry, Chemical Fractionation, Drug Stability, Female, Linear Models, Macaca mulatta, Organophosphorus Compounds blood, Radiation-Protective Agents analysis, Reference Standards, Reproducibility of Results, Chromatography, Liquid methods, Organophosphorus Compounds pharmacokinetics, Radiation-Protective Agents pharmacokinetics, Tandem Mass Spectrometry methods
- Abstract
Octadecenyl thiophosphate (OTP), a synthetic analogue of the lysophospholipid growth factor lysophosphatidic acid (LPA), significantly reduces mortality following a lethal dose of LD(80/30) radiation exposure in a mouse model of whole-body irradiation. To facilitate dose scaling between species, we developed a novel liquid chromatography/tandem mass spectrometry (LC-MS/MS) for the preclinical pharmacokinetic characterization of OTP in monkeys. Sample extraction was carried out using a butanol based liquid-liquid extraction method. A partially deuterated OTP analogue was used as internal standard (IS). OTP and IS were separated by reversed-phase liquid chromatography on a C-8 column using 10mM ammonium acetate and acetonitrile. A triple quadrupole mass spectrometer operating in the negative electrospray ionization mode with multiple reaction monitoring was used to detect OTP and IS transitions of m/z 363.1-->95.0 and 403.1-->95.0. The method was applied to determine pharmacokinetic parameters in monkeys receiving a single oral OTP dose (3mg/kg). OTP is readily absorbed with a relatively long half-life which supports further preclinical testing of OTP as a radioprotectant in monkeys., (Copyright (c) 2010 Elsevier B.V. All rights reserved.)
- Published
- 2010
- Full Text
- View/download PDF
31. Quantification of endogenous alpha- and gamma-endorphins in rat brain by liquid chromatography-tandem mass spectrometry.
- Author
-
Kosanam H, Ramagiri S, and Dass C
- Subjects
- Amino Acid Sequence, Animals, Male, Molecular Sequence Data, Rats, Rats, Wistar, alpha-Endorphin chemistry, gamma-Endorphin chemistry, Brain Chemistry, Chromatography, Liquid methods, Spectrometry, Mass, Electrospray Ionization methods, Tandem Mass Spectrometry methods, alpha-Endorphin analysis, gamma-Endorphin analysis
- Abstract
Quantification of alpha- and gamma-endorphins in rat brain using liquid chromatography-electrospray ionization-tandem mass spectrometry is described. [D-Ala(2)]-gamma-endorphin is used as an internal standard. The precursor-to-product ion MRM transitions for alpha-endorphin, gamma-endorphin, and [D-Ala(2)]-gamma-endorphin were m/z 873.6-->429.6; 929.6-->542.3; 936.6-->542.3, respectively. The method was validated in terms of linearity, specificity, sensitivity, recovery, precision, and accuracy. The assay was linear over a concentration range of 0.1-200 ng/mL with the limit-of-detection of 0.03 ng/mL and limit-of-quantification of 0.1 ng/mL. The endogenous concentrations of alpha- and gamma-endorphins in rat brains were 13.8+/-0.57 (mean+/-SD; n=5) and 2.5+/-0.43 ng/g of wet tissue weight, respectively.
- Published
- 2009
- Full Text
- View/download PDF
32. Fast and sensitive liquid chromatography/electrospray mass spectrometry method to study ocular penetration of EDL-155, a novel antitumor agent for retinoblastoma in rats.
- Author
-
Ramagiri S, Ma F, Kosanam H, Wang X, Patil R, Miller DD, Geisert E, and Yates CR
- Subjects
- Animals, Antineoplastic Agents administration & dosage, Antineoplastic Agents analysis, Antineoplastic Agents blood, Drug Stability, Linear Models, Rats, Rats, Wistar, Reference Standards, Reproducibility of Results, Retinoblastoma drug therapy, Sensitivity and Specificity, Tetrahydroisoquinolines administration & dosage, Tetrahydroisoquinolines analysis, Tetrahydroisoquinolines blood, Vitreous Body chemistry, Antineoplastic Agents pharmacokinetics, Chromatography, High Pressure Liquid methods, Spectrometry, Mass, Electrospray Ionization methods, Tetrahydroisoquinolines pharmacokinetics, Vitreous Body metabolism
- Abstract
Our group has used the tetrahydroisoquinoline derivative EDL-155 to treat glioblastoma in animal models and it is currently being evaluated in the treatment of ocular cancers. The purpose of this study was to develop a rapid and sensitive liquid chromatography and tandem mass spectrometry (LC-MS/MS) method to study the plasma and vitreous humor disposition of EDL-155 in rats. Animals received a single periocular injection of EDL-155 (20 mg/kg). Animals were sacrificed at specified times (5, 60, 120, 240 and 360 min) and plasma and vitreous humor samples were obtained. EDL-155 was isolated by protein precipitation and the extracts were analyzed by reversed-phase high-pressure liquid chromatography (HPLC) with MS/MS detection. A structurally similar analog was used as internal standard (IS). The chromatographic run time was 3.5 min per injection. The mass spectrometer was operated in positive-ion, multiple reaction monitoring (MRM) mode. The mass transitions monitored were m/z332.2 --> 167.2 (EDL-155) and m/z391.2 --> 200.2 (IS). The lower limit of quantification (LLOQ) was 0.1 ng/ml in both vitreous humor and plasma. The method was validated for selectivity, linearity, accuracy and precision in rat vitreous humor and partially validated for accuracy and precision in rat plasma. The ion suppression, recovery and stability of the analyte in the biological matrix were also tested. The assay was rapid, sensitive and robust enough to support EDL-155 ocular penetration studies in a rodent model of intraocular cancer. Application of this method revealed that EDL-155 was rapidly passed into the vitreous humor following periocular administration. Further, vitreous humor exposure exceeded systemic exposure by approximately sevenfold. High local concentrations coupled with minimal systemic exposure supports further testing of EDL-155 as localized therapy for intraocular cancers., (2009 John Wiley & Sons, Ltd.)
- Published
- 2009
- Full Text
- View/download PDF
33. Plasma and cerebrospinal fluid pharmacokinetics of the novel tetrahydroisoquinoline EDL-155 in rats.
- Author
-
Song P, Ma F, Wang F, Wang X, Patil R, Ramagiri S, Orr WE, Miller DD, Geisert E, and Yates CR
- Subjects
- Animals, Antineoplastic Agents blood, Antineoplastic Agents cerebrospinal fluid, Biological Availability, Brain Neoplasms metabolism, Chromatography, Liquid, Glioma metabolism, Half-Life, Humans, Injections, Intravenous, Male, Mass Spectrometry, Neoplasm Transplantation, Rats, Rats, Sprague-Dawley, Tetrahydroisoquinolines blood, Tetrahydroisoquinolines cerebrospinal fluid, Antineoplastic Agents pharmacokinetics, Tetrahydroisoquinolines pharmacokinetics
- Abstract
Purpose: Tetrahydroisoquinolines (THIs) have demonstrated anti-cancer activity in rodent models of glioma, a form of brain cancer refractory to therapeutic intervention. In this study, peripheral and cerebrospinal fluid (CSF) pharmacokinetics in rats were determined to assess the drug developability of the novel THI EDL-155 for the treatment of glioma., Methods: Serial blood and CSF samples were collected from rats following intravenous bolus administration of EDL-155 (10-20 mg/kg). Samples were analyzed by LC/MS/MS. Pharmacokinetic analyses using compartmental and noncompartmental methods were performed using the computer program WinNonlin. Plasma protein binding was measured using the charcoal adsorption method. The in vivo efficacy of EDL-155 (i.p. 20 mg/kg twice daily for 7 days) was assessed in rats with stereotactically implanted C6 glioma cells into the caudate., Results: EDL-155 plasma concentration data were described by a one-compartment model. EDL-155 demonstrated rapid clearance (342.5+/-49.9 ml/min/kg), high volume of distribution (13.0+/-1.2 l/kg) and a terminal half-life of 23.7+/-1.5 min. Dose-normalized CSF area under the curve (AUC(CSF)) as a percentage of peripheral exposure (AUC(Plasma)) was 1.4%. EDL-155 was highly bound to plasma proteins (>93%). Intracranial tumor volume at 7 days post-implantation was approximately 30% smaller in animals treated with EDL-155 when compared to vehicle control animals (13.2+/-5.3 mm(3) vs. 18.7+/-6.3 mm(3); P=0.04)., Conclusion: High clearance and extensive protein binding limit the brain availability of EDL-155 following systemic administration. EDL-155 treatment resulted in reduced tumor size despite limited blood brain barrier penetrability, which suggests that analogs with increased metabolic stability and brain penetrability may provide a therapeutic option for primary central nervous system tumors such as glioma. On-going studies are focused on the design, synthesis, and testing of novel analogs based upon these findings.
- Published
- 2008
- Full Text
- View/download PDF
34. Quantitative chiral analysis of phthaloylglutamic acid and related analogs by a single ratio kinetic method using electrospray ionization and matrix-assisted laser desorption techniques.
- Author
-
Ramagiri S, Gupte R, Rakov I, Yates CR, and Miller DD
- Subjects
- Stereoisomerism, Glutamates analysis, Spectrometry, Mass, Electrospray Ionization methods, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization methods, Tandem Mass Spectrometry methods
- Abstract
A rapid method for quantitative chiral analysis of phthaloylglutamic acid and its dimethyl ester by Cook's kinetic method is demonstrated using electrospray ionization (ESI) and matrix-assisted laser desorption techniques. Transition-metal-bound complex ions containing the chiral phthaloylglutamic acid and its dimethyl ester are generated by ESI mass spectrometry and subjected to collision-induced dissociation. The ratio of the two competitive dissociation rates is related to the enantiomeric composition of the drug mixture. A seven-point calibration curve, derived from the kinetic method, allowed rapid quantitation of the enantiomeric excess of drug mixtures. In this paper, matrix-assisted laser desorption/ionization (MALDI) coupled with the linear ion trap (LIT) technique is evaluated for its applicability as a complementary technique to ESI for chiral discrimination and quantitation.
- Published
- 2008
- Full Text
- View/download PDF
35. Rapid screening of doping agents in human urine by vacuum MALDI-linear ion trap mass spectrometry.
- Author
-
Kosanam H, Prakash PK, Yates CR, Miller DD, and Ramagiri S
- Subjects
- Benzoates chemistry, Betamethasone urine, Coumaric Acids chemistry, Fatty Alcohols, Humans, Nandrolone urine, Porphyrins chemistry, Quaternary Ammonium Compounds chemistry, Reproducibility of Results, Sensitivity and Specificity, Surface-Active Agents chemistry, Testosterone analogs & derivatives, Testosterone urine, Trenbolone Acetate urine, Vacuum, Anabolic Agents urine, Doping in Sports, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization methods, Substance Abuse Detection methods
- Abstract
Detection of doping agents in urine frequently requires extensive separation prior to chemical analyses. Gas or liquid chromatography coupled to mass spectrometry has produced accurate and sensitive assays, but chromatographic separations require time and, sometimes, chemical derivatization. To avoid such tedious and lengthy procedures, vacuum matrix-assisted laser desorption ionization (vMALDI) coupled with the linear ion trap mass spectrometry (LIT/MS) technique is tested for its applicability as a rapid screening technique. Commonly used doping agents like nandrolone, boldenone, trenbolone, testosterone, and betamethasone were chosen as study compounds. Different MALDI matrixes like alpha-cyano-4-hydroxycinnamic acid (CHCA), dihyroxy benzoic acid (DHB) with and without cetyl trimethyl ammonium bromide (CTAB), a surfactant, and meso-tetrakis(pentafluorophenyl) porphyrin (F20TPP) were tested. Among them, F20TPP (MW 974.57 Da) was selected as the preferred matrix owing to the lack of interfering matrix peaks at the lower mass range (m/z 100-700). Urine samples spiked with study compounds were processed by solid-phase extraction (SPE) and consistently detected through a linear range of 0.1-100 ng/mL. The limit of detection and lower limit of quantification for all five analytes have been determined to be 0.03 and 0.1 ng/mL, respectively, in urine samples. Testosterone-d3 was used as an internal standard, and the quantitative measurements were achieved by the selective reaction monitoring (SRM) mode. The method was validated and showed consistency in the results. Hence, vMALDI-LIT/MS can be used as a rapid screening method to complement the traditional GC/MS and LC/MS techniques for simultaneous identification, confirmation, and quantification of doping agents in urine.
- Published
- 2007
- Full Text
- View/download PDF
36. Stability study of fluoxetine in formalin-fixed liver tissue.
- Author
-
Ramagiri S, Shukla SK, and Sai Prakash PK
- Subjects
- Animals, Forensic Medicine, Liver chemistry, Methylation, Rats, Tissue Fixation, Antidepressive Agents, Second-Generation chemistry, Embalming, Fixatives chemistry, Fluoxetine chemistry, Formaldehyde chemistry
- Abstract
In the present work, we report conversion of fluoxetine (Prozac), a novel anti depressant to N-methyl fluoxetine in formalin fixed liver tissue. Earlier studies indicate that drugs containing secondary amino group will react with formalin to form corresponding N-methyl derivatives. Even though embalming cadavers is common, it may create problems for forensic toxicologists if a case was not previously suspected. In formalin solutions, fluoxetine is methylated producing N-methyl fluoxetine. N-Methyl fluoxetine standard was synthesized by treating fluoxetine in formaldehyde solution. The structure confirmed by (1)HNMR and gas chromatography-mass spectrometry in electron impact ionization mode. Randomly chosen rat liver pieces (200-250 mg) were injected with 100 microg of Fluoxetine. The liver pieces were covered with three different concentrations of formalin, 5%, 10%, and 20%, and at three different pHs, 3.0, 7.0, and 9.5. The reaction was studied for a total period of 30 days, and the reaction products were monitored on days 0, 4, 14, and 30 days. The study indicates that the rate of conversion of fluoxetine to its N-methyl derivative increased with increase in the concentration of formalin and pH of the solution. The conversion is rapid at higher pH values. Fluoxetine was totally converted to its N-methyl derivatives after 30 days in 20% formalin at pH 9.5. Therefore, analysis for parent drug or its N-methyl derivative in embalmed tissues may provide data that will reduce the likelihood of false negatives.
- Published
- 2006
- Full Text
- View/download PDF
37. Drosophila homologue of Eps15 is essential for synaptic vesicle recycling.
- Author
-
Majumdar A, Ramagiri S, and Rikhy R
- Subjects
- Adaptor Protein Complex alpha Subunits metabolism, Animals, Carrier Proteins metabolism, Drosophila genetics, Drosophila physiology, Drosophila Proteins genetics, Drosophila Proteins metabolism, Dynamins genetics, Dynamins metabolism, Electroretinography, Endocytosis genetics, Endocytosis physiology, Microscopy, Electron, Mutation genetics, N-Ethylmaleimide-Sensitive Proteins genetics, N-Ethylmaleimide-Sensitive Proteins metabolism, Nerve Tissue Proteins genetics, Nerve Tissue Proteins metabolism, Photoreceptor Cells, Invertebrate metabolism, Photoreceptor Cells, Invertebrate ultrastructure, Presynaptic Terminals metabolism, Presynaptic Terminals ultrastructure, Protein Binding, Pyridinium Compounds metabolism, Quaternary Ammonium Compounds metabolism, Temperature, Drosophila Proteins physiology, Nerve Tissue Proteins physiology, Synaptic Vesicles physiology
- Abstract
The mammalian protein Eps15 is phosphorylated by EGF receptor tyrosine kinase and has been shown to interact with several components of the endocytic machinery. We have identified a hypomorphic Eps15 mutant in Drosophila which shows reversible paralysis and an altered physiology at restrictive temperatures. In addition, the temperature-sensitive paralytic defect of shibire mutant is enhanced by this mutant. Eps15 is enriched in the larval neuromuscular junction in endocytic 'hot spots' in a pattern similar to Dynamin. Eps15 mutants show a decrease in the alpha-Adaptin levels at the larval neuromuscular junction synapse. Genetic and biochemical studies of interactions with components of the endocytic machinery suggest that Eps15 has an important role in synaptic vesicle recycling and regulates recruitment of alpha-Adaptin.
- Published
- 2006
- Full Text
- View/download PDF
38. Unique biochemical and behavioral alterations in Drosophila shibire(ts1) mutants imply a conformational state affecting dynamin subcellular distribution and synaptic vesicle cycling.
- Author
-
Chen ML, Green D, Liu L, Lam YC, Mukai L, Rao S, Ramagiri S, Krishnan KS, Engel JE, Lin JJ, and Wu CF
- Subjects
- Animals, Drosophila, Drosophila Proteins metabolism, Dynamins metabolism, Protein Conformation, Subcellular Fractions metabolism, Synaptic Vesicles metabolism, Behavior, Animal physiology, Drosophila Proteins chemistry, Drosophila Proteins genetics, Dynamins chemistry, Dynamins genetics, Mutation genetics, Synaptic Vesicles genetics
- Abstract
Dynamin is a GTPase protein that is essential for clathrin-mediated endocytosis of synaptic vesicle membranes. The Drosophila dynamin mutation shi(ts1) changes a single residue (G273D) at the boundary of the GTPase domain. In cell fractionation of homogenized fly heads without monovalent cations, all dynamin was in pellet fractions and was minimally susceptible to Triton-X extraction. Addition of Na(+) or K(+) can extract dynamin to the cytosolic (supernatant) fraction. The shi(ts1) mutation reduced the sensitivity of dynamin to salt extraction compared with other temperature-sensitive alleles or wild type. Sensitivity to salt extraction in shi(ts1) was enhanced by GTP and nonhydrolyzable GTP-gammaS. The shi(ts1) mutation may therefore induce a conformational change, involving the GTP binding site, that affects dynamin aggregation. Temperature-sensitive shibire mutations are known to arrest endocytosis at restrictive temperatures, with concomitant accumulation of presynaptic collared pits. Consistent with an effect upon dynamin aggregation, intact shi(ts1) flies recovered much more slowly from heat-induced paralysis than did other temperature-sensitive shibire mutants. Moreover, a genetic mutation that lowers GTP abundance (awd(msf15)), which reduces the paralytic temperature threshold of other temperature-sensitive shibire mutations that lie closer to consensus GTPase motifs, did not reduce the paralytic threshold of shi(ts1). Taken together, the results may link the GTPase domain to conformational shifts that influence aggregation in vitro and endocytosis in vivo, and provide an unexpected point of entry to link the biophysical properties of dynamin to physiological processes at synapses., (Copyright 2002 Wiley Periodicals, Inc.)
- Published
- 2002
- Full Text
- View/download PDF
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.