43 results on '"Ray Boyapati"'
Search Results
2. Genome-Wide Methylation Profiling in 229 Patients With Crohn’s Disease Requiring Intestinal Resection: Epigenetic Analysis of the Trial of Prevention of Post-operative Crohn’s Disease (TOPPIC)Summary
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Nicholas T. Ventham, Nicholas A. Kennedy, Rahul Kalla, Alex T. Adams, Alexandra Noble, Holly Ennis, Craig Mowat, Malcolm G. Dunlop, Jack Satsangi, Ian Arnott, Aiden Cahill, Malcolm Smith, Tariq Ahmad, Sreedhar Subramanian, Simon Travis, John Morris, John Hamlin, Anjan Dhar, Chuka Nwokolo, Cathryn Edwards, Tom Creed, Stuart Bloom, Mohamed Yousif, Linzi Thomas, Simon Campbell, Stephen J. Lewis, Shaji Sebastian, Sandip Sen, Simon Lal, Chris Hawkey, Charles Murray, Fraser Cummings, Jason Goh, James O. Lindsay, Naila Arebi, Lindsay Potts, Aileen J. McKinley, John M. Thomson, John A. Todd, Mhairi Collie, Ashley Mowat, Daniel R. Gaya, Jack Winter, Graham D. Naismith, Catriona Keerie, Steff Lewis, Robin J. Prescott, Gordan Lauc, Harry Campbell, Dermot P.B. McGovern, Vito Annese, Vlatka Zoldoš, Iain K. Permberton, Manfred Wuhrer, Daniel Kolarich, Daryl L. Fernandes, Evropi Theorodorou, Victoria Merrick Daniel I. Spencer, Richard A. Gardner, Ray Doran, Archana Shubhakar, Ray Boyapati, Igor Rudan, Paolo Lionetti, Irena Trbojević Akmačić, Jasminka Krištić, Frano Vuč ković, Jerko Štambuk, Mislav Novokmet, Maja Pučić-Baković, Olga Gornik, Angelo Andriulli, Laura Cantoro, Giancarlo Sturniolo, Gionata Fiorino, Natalia Manetti, Anna Latiano, Anna Kohn, Renata D’Inca`, Silvio Danese, Ian D. Arnott, Colin L. Noble, Charlie W. Lees, Alan G. Shand, Gwo-Tzer Ho, Lee Murphy, Jude Gibson, Louise Evenden, Nicola Wrobel, Tamara Gilchrist, Angie Fawkes, Guinevere S.M. Kammeijer, Florent Clerc, Noortje de Haan, Aleksandar Vojta, Ivana Samaržija, Dora Markulin, Marija Klasić, Paula Dobrinić, Yurii Aulchenko, Tim van den Heuve, Daisy Jonkers, and Marieke Pierik
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Crohn's disease ,Surgery ,DNA methylation ,Epigenetics ,Inflammatory bowel disease ,Aging ,Diseases of the digestive system. Gastroenterology ,RC799-869 - Abstract
Background & Aims: DNA methylation alterations may provide important insights into gene-environment interaction in cancer, aging, and complex diseases, such as inflammatory bowel disease (IBD). We aim first to determine whether the circulating DNA methylome in patients requiring surgery may predict Crohn’s disease (CD) recurrence following intestinal resection; and second to compare the circulating methylome seen in patients with established CD with that we had reported in a series of inception cohorts. Methods: TOPPIC was a placebo-controlled, randomized controlled trial of 6-mercaptopurine at 29 UK centers in patients with CD undergoing ileocolic resection between 2008 and 2012. Genomic DNA was extracted from whole blood samples from 229 of the 240 patients taken before intestinal surgery and analyzed using 450KHumanMethylation and Infinium Omni Express Exome arrays (Illumina, San Diego, CA). Coprimary objectives were to determine whether methylation alterations may predict clinical disease recurrence; and to assess whether the epigenetic alterations previously reported in newly diagnosed IBD were present in the patients with CD recruited into the TOPPIC study. Differential methylation and variance analysis was performed comparing patients with and without clinical evidence of recurrence. Secondary analyses included investigation of methylation associations with smoking, genotype (MeQTLs), and chronologic age. Validation of our previously published case-control observation of the methylome was performed using historical control data (CD, n = 123; Control, n = 198). Results: CD recurrence in patients following surgery is associated with 5 differentially methylated positions (Holm P < .05), including probes mapping to WHSC1 (P = 4.1 × 10-9, Holm P = .002) and EFNA3 (P = 4.9 × 10-8, Holm P = .02). Five differentially variable positions are demonstrated in the group of patients with evidence of disease recurrence including a probe mapping to MAD1L1 (P = 6.4 × 10-5). DNA methylation clock analyses demonstrated significant age acceleration in CD compared with control subjects (GrimAge + 2 years; 95% confidence interval, 1.2–2.7 years), with some evidence for accelerated aging in patients with CD with disease recurrence following surgery (GrimAge +1.04 years; 95% confidence interval, -0.04 to 2.22). Significant methylation differences between CD cases and control subjects were seen by comparing this cohort in conjunction with previously published control data, including validation of our previously described differentially methylated positions (RPS6KA2 P = 1.2 × 10-19, SBNO2 = 1.2 × 10-11) and regions (TXK [false discovery rate, P = 3.6 × 10-14], WRAP73 [false discovery rate, P = 1.9 × 10-9], VMP1 [false discovery rate, P = 1.7 × 10-7], and ITGB2 [false discovery rate, P = 1.4 × 10-7]). Conclusions: We demonstrate differential methylation and differentially variable methylation in patients developing clinical recurrence within 3 years of surgery. Moreover, we report replication of the CD-associated methylome, previously characterized only in adult and pediatric inception cohorts, in patients with medically refractory disease needing surgery.
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- 2023
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3. An Unusual Presentation of Herpes Simplex Virus Encephalitis
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Ray Boyapati, George Papadopoulos, James Olver, Michael Geluk, and Paul D. R. Johnson
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Medicine - Abstract
We present a case of a 65-year-old man with an acute alteration in mental state that was initially diagnosed as a functional psychiatric condition. After extensive workup, herpes simplex virus type 1 (HSV-1) was detected in the patient’s cerebrospinal fluid (CSF) by polymerase chain reaction (PCR), and he responded rapidly to treatment with acyclovir. The case illustrates the importance of actively excluding organic causes in such patients, the need to have a low threshold of suspicion for HSV encephalitis, and the central role of CSF PCR testing for the diagnosis of HSV encephalitis, even in the absence of CSF biochemical abnormalities.
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- 2012
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4. Risk of COVID 19 in patients with inflammatory bowel diseases compared to a control population
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Chiara Ricci, Francesca Ferretti, Marco Vincenzo Lenti, Luca Pastorelli, Alessandro Massari, Massimo Galli, Simone Saibeni, Nicole Piazza, F. Giangregorio, Samanta Romeo, Fabio Tagliani, Ray Boyapati, Cristina Bosetti, S. Greco, Sandro Ardizzone, Alberta De Monti, Anna Maria Carvalhas Gabrielli, Giovanni Maconi, Antonio Di Sabatino, Edward Shelton, Saverio Alicante, Giuliano Rizzardini, Cristina Bezzio, and Daniele Gridavilla
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Adult ,Male ,medicine.medical_specialty ,Coronavirus disease 2019 (COVID-19) ,Gastrointestinal Diseases ,Severe disease ,Inflammatory bowel disease ,Population control ,03 medical and health sciences ,0302 clinical medicine ,Risk Factors ,Internal medicine ,Prevalence ,medicine ,Humans ,In patient ,Hepatology ,Alimentary Tract ,SARS-CoV-2 ,business.industry ,Gastroenterology ,Inflammatory Bowel Diseases ,COVID-19 ,Middle Aged ,medicine.disease ,digestive system diseases ,Symptoms ,Hospitalization ,Increased risk ,Italy ,Case-Control Studies ,030220 oncology & carcinogenesis ,Female ,030211 gastroenterology & hepatology ,Observational study ,business - Abstract
Background It is unclear whether patients with inflammatory bowel disease (IBD) are at increased risk of COVID-19. Objectives This observational study compared the prevalence of COVID-19 symptoms, diagnosis and hospitalization in IBD patients with a control population with non-inflammatory bowel disorders. Methods This multicentre study, included 2733 outpatients (1397 IBD patients and 1336 controls), from eight major gastrointestinal centres in Lombardy, Italy. Patients were invited to complete a web-based questionnaire regarding demographic, historical and clinical features over the previous 6 weeks. The prevalence of COVID-19 symptoms, diagnosis and hospitalization for COVID-19 was assessed. Results 1810 patients (64%) responded to the questionnaire (941 IBD patients and 869 controls). IBD patients were significantly younger and of male sex than controls. NSAID use and smoking were more frequent in controls. IBD patients were more likely treated with vitamin-D and vaccinated for influenza. Highly probable COVID-19 on the basis of symptoms and signs was less frequent in the IBD group (3.8% vs 6.3%; OR:0.45, 95%CI:0.28–0.75). IBD patients had a lower rate of nasopharyngeal swab-PCR confirmed diagnosis (0.2% vs 1.2%; OR:0.14, 95%CI:0.03–0.67). There was no difference in hospitalization between the groups (0.1% vs 0.6%; OR:0.14, 95%CI:0.02–1.17). Conclusion IBD patients do not have an increased risk of COVID-19 specific symptoms or more severe disease compared with a control group of gastroenterology patients.
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- 2020
5. Vedolizumab for induction and maintenance of remission in Crohn’s disease
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Ray Boyapati, Nik S. Ding, Anuj Krishna, and Samuel Hui
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medicine.medical_specialty ,Crohn's disease ,genetic structures ,business.industry ,Internal medicine ,education ,Medicine ,Pharmacology (medical) ,business ,medicine.disease ,Gastroenterology ,Vedolizumab ,medicine.drug - Abstract
This is a protocol for a Cochrane Review (intervention). The objectives are as follows: The primary objective of this systematic review of the literature is to assess the efficacy and safety of vedolizumab in the induction and maintenance of remission in Crohn's disease.
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- 2020
6. Precision medicine in inflammatory bowel disease: concept, progress and challenges
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Rahul Kalla, Simon Borg-Bartolo, Ray Boyapati, and Jack Satsangi
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0301 basic medicine ,medicine.medical_specialty ,Exposome ,precision medicine ,microbiome ,Disease ,Review ,Inflammatory bowel disease ,General Biochemistry, Genetics and Molecular Biology ,03 medical and health sciences ,0302 clinical medicine ,inflammatory bowel disease ,medicine ,genomics ,therapeutics ,Humans ,Microbiome ,General Pharmacology, Toxicology and Pharmaceutics ,Intensive care medicine ,ulcerative colitis ,Crohn's disease ,General Immunology and Microbiology ,Microbiota ,biomarkers ,General Medicine ,Articles ,medicine.disease ,Precision medicine ,Inflammatory Bowel Diseases ,Ulcerative colitis ,030104 developmental biology ,Etiology ,030211 gastroenterology & hepatology ,prognosis - Abstract
Crohn’s disease and ulcerative colitis are increasingly prevalent, relapsing and remitting inflammatory bowel diseases (IBDs) with variable disease courses and complications. Their aetiology remains unclear but current evidence shows an increasingly complex pathophysiology broadly centring on the genome, exposome, microbiome and immunome. Our increased understanding of disease pathogenesis is providing an ever-expanding arsenal of therapeutic options, but these can be expensive and patients can lose response or never respond to certain therapies. Therefore, there is now a growing need to personalise therapies on the basis of the underlying disease biology and a desire to shift our approach from “reactive” management driven by disease complications to “proactive” care with an aim to prevent disease sequelae. Precision medicine is the tailoring of medical treatment to the individual patient, encompassing a multitude of data-driven (and multi-omic) approaches to foster accurate clinical decision-making. In IBD, precision medicine would have significant benefits, enabling timely therapy that is both effective and appropriate for the individual. In this review, we summarise some of the key areas of progress towards precision medicine, including predicting disease susceptibility and its course, personalising therapies in IBD and monitoring response to therapy. We also highlight some of the challenges to be overcome in order to deliver this approach.
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- 2020
7. Patients' perceptions of faecal calprotectin testing in inflammatory bowel disease: results from a prospective multicentre patient-based survey
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Gonzalo Hijos, Jørgen Jahnsen, Rahul Kalla, Benjamin Crooks, Gregory T. Moore, Fernando Gomollón, George Lipscomb, Simen Vatn, Ray Boyapati, Salil Singh, and Veronica Hall
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Adult ,Male ,medicine.medical_specialty ,Adolescent ,Inflammatory bowel disease ,Severity of Illness Index ,03 medical and health sciences ,Feces ,Young Adult ,fluids and secretions ,0302 clinical medicine ,Internal medicine ,Surveys and Questionnaires ,medicine ,Humans ,Prospective Studies ,Aged ,Aged, 80 and over ,Crohn's disease ,business.industry ,digestive, oral, and skin physiology ,Gastroenterology ,Australia ,Inflammatory Bowel Diseases ,Colonoscopy ,Middle Aged ,medicine.disease ,Faecal calprotectin ,Ulcerative colitis ,digestive system diseases ,Europe ,Patient perceptions ,Logistic Models ,030220 oncology & carcinogenesis ,Occult Blood ,Multivariate Analysis ,030211 gastroenterology & hepatology ,Female ,Sample collection ,business ,Leukocyte L1 Antigen Complex ,Biomarkers - Abstract
Despite its success, there appears to be practical issues with Faecal Calprotectin (FC) testing in Inflammatory Bowel Diseases (IBD), including sample collection, delivery and processing delays. Patients' perception and barriers to FC testing are yet to be explored in clinical practice.A prospective patient survey was undertaken at IBD units in UK, Europe and Australia. A 9-point patient-based questionnaire was completed in clinic and included demographics, previous FC testing and FC sample difficulty rating score. Predictors of testing difficulty were derived using multivariable logistic regression analysis.A total of 585 patients with IBD completed the survey; 306 males with a median age of 43 years (IQR: 31-54). There were 446 patients (76%) who had prior FC testing experience. Of these, 37% (n = 165) rated FC testing difficult; 'sample collection' (n = 106; 67%) being the most common reason reported. Multivariable regression analysis identified age49 years (odds ratio (OR): 2.5, CI:1.6-4.0), disease duration35 months (OR 1.4, CI:0.9-2.1) and testing location (UK centre: OR 1.9, CI:1.2-3.1) as predictors of a difficult FC rating score.A total of 37% of patients find FC testing challenging, in particular those aged49 years, disease duration35 months. Further studies understanding and addressing these practical issues may aid higher FC uptake in clinic.
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- 2018
8. OWE-008 Patients’ perception of faecal calprotectin testing in inflammatory bowel disease: a multi-centre prospective survey
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Gonzalo Hijos, Gregory T. Moore, Rahul Kalla, Veronica Hall, Ray Boyapati, Simen Vatn, Benjamin Crooks, Jørgen Jahnsen, Suzanne Tatersall, George Lipscomb, Salil Singh, and Fernando Gomollón
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medicine.medical_specialty ,Receiver operating characteristic ,medicine.diagnostic_test ,business.industry ,medicine.disease ,Logistic regression ,Faecal calprotectin ,Inflammatory bowel disease ,Internal medicine ,Cohort ,medicine ,Biomarker (medicine) ,Blood test ,Sample collection ,business - Abstract
Introduction Faecal Calprotectin is an established biomarker in the investigation and management of Inflammatory Bowel Disease (IBD). Despite its success, there appears to be practical issues with FC testing in clinical practice, including sample collection, sample delivery and processing delays. There are no studies exploring patients’ perception of faecal testing in IBD. We investigate patients’ perception of FC testing in clinical practice across centres in UK, Europe and Australia. Methods A prospective patient survey was undertaken in an IBD unit in England from 12/2016 to 2/2017 and extended to 3 centres (Spain, Australia and Norway) from 07/2017 until 11/2017. Patients were asked to complete a 9-point based questionnaire in clinic which included diagnosis, patient demographics, previous FC testing, FC sample collection difficulty rating score (0–4) and preference to alternative methods of disease monitoring including blood tests and endoscopy. Predictors of FC testing difficulty were derived using multivariable logistic regression analysis. Continuous variables were categorised using integer cut points guided by the ROC curves and their relationship to the FC rating score. Results A total of 585 patients with IBD completed the survey. There were 306 males (52%) with a median age of 43 years (IQR: 31–54). A total of 299, 279, and 7 patients had a diagnosis of CD, UC, IBDU respectively. Median disease duration of the entire cohort was 36 months (IQR 22–66 months). There were 446 patients (76%) who had prior FC testing experience. Of these, 37% (n=165) rated FC testing either moderately difficult (score 2), difficult (score 3) or very difficult (score 4). The reasons included ‘dropping FC sample’ (n=14; 9%), ‘sample collection’ (n=106; 67%) or ‘both’ (n=39; 25%). In these patients, 80%(n=130) patients would rather have a blood test over faecal testing. Categorical multivariable regression analysis was performed to identify factors that predict a high FC difficulty rating score. Using age, gender, disease duration, disease subtype, use of collection kits and geographical location as covariates, age Conclusions Our study is the first to explore patients’ perception of FC testing as a routine biomarker in IBD across Europe and Australia. A significant 37% find FC testing challenging, in particular those aged
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- 2018
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9. Withdrawal of immunosuppressant or biologic therapy for patients with quiescent Crohn's disease
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Tran M Nguyen, Carolina Palmela, Jean-Frederic Colombel, Claire E Parker, Sonam D. Upadhyaya, Orli M. Silverberg, Ray Boyapati, and Joana Torres
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Medicine General & Introductory Medical Sciences ,Adult ,medicine.medical_specialty ,Combination therapy ,Azathioprine ,law.invention ,03 medical and health sciences ,0302 clinical medicine ,Maintenance therapy ,Randomized controlled trial ,Crohn Disease ,Gastrointestinal Agents ,law ,Recurrence ,Internal medicine ,medicine ,Secondary Prevention ,Humans ,Pharmacology (medical) ,Adverse effect ,Randomized Controlled Trials as Topic ,business.industry ,Remission Induction ,Combined Modality Therapy ,Infliximab ,Discontinuation ,Regimen ,Withholding Treatment ,030220 oncology & carcinogenesis ,Feasibility Studies ,030211 gastroenterology & hepatology ,business ,Immunosuppressive Agents ,medicine.drug - Abstract
Background Crohn's disease (CD) is a chronic, relapsing and remitting disease of the gastrointestinal tract that can cause significant morbidity and disability. Current treatment guidelines recommend early intervention with immunosuppressant or biological therapy in high-risk patients with a severe disease phenotype at presentation. The feasibility of therapeutic de-escalation once remission is achieved is a commonly encountered question in clinical practice, driven by patient and clinician concerns regarding safety, adverse events, cost and national regulations. Withdrawal of immunosuppressant and biologic drugs in patients with quiescent CD may limit adverse events and reduce healthcare costs. Alternatively, stopping these drug therapies may result in negative outcomes such as disease relapse, drug desensitization, bowel damage and need for surgery. Objectives To assess the feasibility and safety of discontinuing immunosuppressant or biologic drugs, administered alone or in combination, in patients with quiescent CD. Search methods We searched CENTRAL, MEDLINE, Embase and the Cochrane IBD Group Specialized Register from inception to 19 December 2017. We also searched the reference lists of potentially relevant manuscripts and conference proceedings to identify additional studies. Selection criteria Randomized controlled trials (RCTs) and prospective cohort studies that followed patients for a minimum duration of six months after drug discontinuation were considered for inclusion. The patient population of interest was adults (> 18 years) with CD (as defined by conventional clinical, endoscopic or histologic criteria) who had achieved remission while receiving immunosuppressant or biologic drugs administered alone or in combination. Patients then discontinued the drug regimen following a period of maintenance therapy of at least six months. The comparison was usual care (i.e. continuation of the drug regimen). Data collection and analysis The primary outcome measure was the proportion of patients who relapsed following discontinuation of immunosuppressant or biologic drugs, administered alone or in combination. Secondary outcomes included: the proportion of patients who responded to the reintroduction of immunosuppressant or biologic drugs, given as monotherapy or combination therapy; the proportion of patients who required surgery following relapse; the proportion of patients who required hospitalization for CD following relapse; the proportion of patients who developed new CD-related complications (e.g. fistula, abscesses, strictures) following relapse; the proportion of patients with elevated biomarkers of inflammation (CRP, fecal calprotectin) in those who stop and those who continue therapy; the proportion of patients with anti-drug antibodies and low serum trough drug levels; time to relapse; and the proportion of patients with adverse events, serious adverse events and withdrawal due to adverse events. For dichotomous outcomes, we calculated the risk ratio (RR) and 95% confidence interval (95% CI). Data were analyzed on an intention-to-treat basis where patients with missing outcome data were assumed to have relapsed. The overall quality of the evidence supporting the primary and secondary outcomes was assessed using the GRADE criteria. Main results A total of six RCTs (326 patients) evaluating therapeutic discontinuation in patients with quiescent CD were eligible for inclusion. In four RCTs azathioprine monotherapy was discontinued, and in two RCTs azathioprine was discontinued from a combination therapy regimen consisting of azathioprine with infliximab. No studies of biologic monotherapy withdrawal were eligible for inclusion. The majority of studies received unclear or low risk of bias ratings, with the exception of three open-label RCTs, which were rated as high risk of bias for blinding. Four RCTs (215 participants) compared discontinuation to continuation of azathioprine monotherapy, while two studies (125 participants) compared discontinuation of azathioprine from a combination regimen to continuation of combination therapy. Continuation of azathioprine monotherapy was shown to be superior to withdrawal for risk of clinical relapse. Thirty-two per cent (36/111) of azathioprine withdrawal participants relapsed compared to 14% (14/104) of participants who continued with azathioprine therapy (RR 0.42, 95% CI 0.24 to 0.72, GRADE low quality evidence). However, it is uncertain if there are any between-group differences in new CD-related complications (RR 0.34, 95% CI 0.06 to 2.08, GRADE low quality evidence), adverse events (RR 0.88, 95% CI 0.67 to 1.17, GRADE low quality evidence), serious adverse events (RR 3.29, 95% CI 0.35 to 30.80, GRADE low quality evidence) or withdrawal due to adverse events (RR 2.59, 95% CI 0.35 to 19.04, GRADE low quality evidence). Common adverse events included infections, mild leukopenia, abdominal symptoms, arthralgias, headache and elevated liver enzymes. No differences between azathioprine withdrawal from combination therapy versus continuation of combination therapy were observed for clinical relapse. Among patients who continued combination therapy with azathioprine and infliximab, 48% (27/56) had a clinical relapse compared to 49% (27/55) of patients discontinued azathioprine but remained on infliximab (RR 1.02, 95% CI 0.68 to 1.52, P = 0.32; GRADE low quality evidence). The effects on adverse events (RR 1.11, 95% CI 0.44 to 2.81, GRADE low quality of evidence) or serious adverse events are uncertain (RR 1.00, 95% CI 0.21 to 4.66; GRADE very low quality of evidence). Common adverse events in the combination therapy studies included infections, liver test elevations, arthralgias and infusion reactions. Authors' conclusions The effects of withdrawal of immunosuppressant therapy in people with quiescent Crohn's disease are uncertain. Low quality evidence suggests that continuing azathioprine monotherapy may be superior to withdrawal for avoiding clinical relapse, while very low quality evidence suggests that there may be no difference in clinical relapse rates between discontinuing azathioprine from a combination therapy regimen, compared to continuing combination therapy. It is unclear whether withdrawal of azathioprine, initially administered alone or in combination, impacts on the development of CD-related complications, adverse events, serious adverse events or withdrawal due to adverse events. Further high-quality research is needed in this area, particularly double-blind RCTs in which biologic therapy or an immunosuppressant other than azathioprine is withdrawn.
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- 2018
10. Controversies in Inflammatory Bowel Disease: Exploring Clinical Dilemmas Using Cochrane Reviews
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John K MacDonald, Claire E Parker, Joana Torres, Brian G. Feagan, Nilesh Chande, Ray Boyapati, and James E. East
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medicine.medical_specialty ,Colorectal cancer ,Colonoscopy ,Administration, Oral ,Disease ,Inflammatory bowel disease ,Aminosalicylate ,03 medical and health sciences ,Drug withdrawal ,0302 clinical medicine ,Crohn Disease ,Internal medicine ,medicine ,Immunology and Allergy ,Humans ,030212 general & internal medicine ,Crohn's disease ,medicine.diagnostic_test ,business.industry ,Gastroenterology ,medicine.disease ,Prognosis ,Ulcerative colitis ,Aminosalicylic Acid ,digestive system diseases ,Withholding Treatment ,Colonic Neoplasms ,030211 gastroenterology & hepatology ,Colitis, Ulcerative ,business - Abstract
A symposium organized by the Cochrane IBD Group and presented at the 2017 Digestive Disease Week annual meeting reviewed the recent literature on several controversial topics in inflammatory bowel disease (IBD) management including the efficacy of oral aminosalicylates for induction and maintenance of Crohn's disease (CD), the feasibility of drug withdrawal in patients with quiescent CD, and strategies for detecting colon cancer in patients with IBD. This article summarizes the data presented at that session.
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- 2018
11. Mitochondrial DNA Is a Pro-Inflammatory Damage-Associated Molecular Pattern Released During Active IBD
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Jack Satsangi, Ray Boyapati, Nicholas T. Ventham, Mary K. Doherty, Philip D. Whitfield, Gwo-Tzer Ho, Mohini Gray, Joseph Loane, Rahul Kalla, Arina Tamborska, Adriano G. Rossi, and David A. Dorward
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Adult ,Male ,0301 basic medicine ,Mitochondrial DNA ,Mitochondrion ,Biology ,DNA, Mitochondrial ,Inflammatory bowel disease ,Mice ,03 medical and health sciences ,Crohn Disease ,medicine ,Journal Article ,Alarmins ,Animals ,Humans ,Immunology and Allergy ,Prospective Studies ,Colitis ,Lamina propria ,Dextran Sulfate ,Gastroenterology ,Damage-associated molecular pattern ,Middle Aged ,Prognosis ,medicine.disease ,Molecular biology ,Ulcerative colitis ,digestive system diseases ,Mice, Inbred C57BL ,030104 developmental biology ,medicine.anatomical_structure ,Real-time polymerase chain reaction ,IBD Live ,Colitis, Ulcerative ,Female ,Biomarkers ,Follow-Up Studies - Abstract
Background Due to common evolutionary origins, mitochondrial DNA (mtDNA) shares many similarities with immunogenic bacterial DNA. MtDNA is recognized as a pro-inflammatory damage-associated molecular pattern (DAMP) with a pathogenic role in several inflammatory diseases. We hypothesised that mtDNA is released during active disease, serving as a key pro-inflammatory factor in inflammatory bowel disease (IBD). Methods Between 2014 and 2015, we collected plasma separated within 2 hours of sampling from 97 prospectively recruited IBD patients (67 ulcerative colitis [UC] and 30 Crohn’s disease [CD]) and 40 non-IBD controls. We measured circulating mtDNA using quantitative polymerase chain reaction (amplifying mitochondria COXIII/ND2 genes) and also in mouse colitis induced by dextran sulfate-sodium (DSS). We used a mass spectometry approach to detect free plasma mitochondrial formylated peptides. Furthermore, we examined for mitochondrial damage using electron microscopy (EM) and TLR9 expression, the target for mtDNA, in human intestinal IBD mucosa. Results Plasma mtDNA levels were increased in UC and CD (both P < 0.0001) compared with non-IBD controls. These levels were significantly correlated to blood (C-reactive protein, albumin, white cell count), clinical and endoscopic markers of severity, and disease activity. In active UC, we identified 5 mitochondrial formylated peptides (the most abundant being fMMYALF with known chemoattractant function) in plasma. We observed mitochondrial damage in inflamed UC mucosa and significantly higher fecal MtDNA levels (vs non-IBD controls [P < 0.0001]), which supports gut mucosal mitochondrial DAMP release as the primary source. In parallel, plasma mtDNA levels increased during induction of acute DSS colitis and were associated with more severe colitis (P < 0.05). In active IBD, TLR9+ lamina propria inflammatory cells were significantly higher in UC and CD compared with controls (P < 0.05). Conclusions We present the first evidence to show that mtDNA is released during active IBD. MtDNA is a potential mechanistic biomarker, and our data point to mtDNA-TLR9 as a therapeutic target in IBD.
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- 2018
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12. Top-down in the long term in Crohn's disease
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Gwo-Tzer Ho, Jack Satsangi, and Ray Boyapati
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medicine.medical_specialty ,Time Factors ,Treatment outcome ,MEDLINE ,03 medical and health sciences ,0302 clinical medicine ,Pharmacotherapy ,Text mining ,Crohn Disease ,Adrenal Cortex Hormones ,medicine ,Humans ,030212 general & internal medicine ,Intensive care medicine ,Biological Products ,Crohn's disease ,business.industry ,Gastroenterology ,General Medicine ,medicine.disease ,Term (time) ,Treatment Outcome ,Drug Therapy, Combination ,030211 gastroenterology & hepatology ,Combination method ,business ,Immunosuppressive Agents - Published
- 2018
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13. Seasonal recurrence of food bolus obstruction in eosinophilic esophagitis
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Ray Boyapati, Rimma Goldberg, Peter R. Gibson, Eugene Lin, Simon G. Royce, Andrew Finch, Sanjay Nandurkar, Francis Thien, Hamish Philpott, and Stephen Bloom
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medicine.medical_specialty ,medicine.diagnostic_test ,business.industry ,Aeroallergen ,Venous blood ,medicine.disease ,medicine.disease_cause ,Endoscopy ,Surgery ,Grass pollen ,Internal medicine ,Food bolus ,Biopsy ,Internal Medicine ,Etiology ,Medicine ,business ,Eosinophilic esophagitis - Abstract
Background Eosinophilic esophagitis (EoE) is a newly recognised condition that is apparently increasing in prevalence, and the aetiology is poorly understood. The role of aeroallergens in EoE is controversial, given the success of dietary therapy. Massive aeroallergen exposure leading to food bolus obstruction events (FBOE) has been described, and the diagnosis of EoE by esophageal biopsy noted to be more common in the pollen season according to previous case series. Aim To determine if a seasonal variation and a geographical variation occurred in EoE presenting as FBOE in adults, and to track the prevalence of FBOE and EoE over time. Method A retrospective case–control study analysis was performed from January 2002 to January 2012 to identify all FBOE in adults presenting to five tertiary hospitals in Melbourne, Australia. Endoscopy, histopathological reports, case notes and blood tests were examined, and postcodes recorded. Records of pollen counts were obtained. Cases were defined according to esophageal biopsy and grouped based on month of diagnosis. All other causes of FBOE served as controls. Results One thousand, one hundred and thirty-two FBOE were identified. Biopsies were only performed in 278 of these cases, and 85 patients were found to have EoE after biopsy. Patients with EoE were younger (mean age 38 years, range 18–72) compared with those with alternative diagnosis (mean age 64.4 range 22–92), more likely to be male (M : F = 4:1 compared with 1.68:1 ) and had a higher eosinophil count in venous blood. Overall no seasonality was demonstrated in FBOE secondary to any diagnosis, although the six cases of recurrent FBOE secondary to EoE mainly occurred in the grass pollen season in subsequent years. FBOE cases were evenly distributed throughout metropolitan Melbourne irrespective of population density. EoE as a percentage of FBOE increased over time. Conclusion Seasonal aeroallergens may be important for a subgroup of patients with EoE presenting as recurrent FBOE. Esophageal biopsies are performed in a minority of patients, representing a significant departure from ideal management and contributing to recurrent unnecessary FBOE. EoE is an increasingly important cause of FBOE.
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- 2015
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14. Ulcerative colitis
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Gwo-Tzer Ho, Ray Boyapati, and Jack Satsangi
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General Medicine ,digestive system diseases - Abstract
Ulcerative colitis (UC) and Crohn’s disease (CD) represent the two major forms of inflammatory bowel disease (IBD). UC is a chronic idiopathic inflammatory condition affecting the colon and rectum. A complex interplay between components of the innate immune system and environmental factors, notably the microflora, regulates colonic mucosal homeostasis which is dysregulated in UC. In this chapter, we review current concepts of the epidemiology, pathogenesis, clinical features and management of UC.
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- 2015
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15. Can Thiopurines Prevent Formation of Antibodies Against Tumor Necrosis Factor Antagonists After Failure of These Therapies?
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Ray Boyapati, Gwo-Tzer Ho, and Jack Satsangi
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Hepatology ,biology ,Tumor Necrosis Factor-alpha ,business.industry ,Gastroenterology ,Infliximab ,03 medical and health sciences ,0302 clinical medicine ,Crohn Disease ,030220 oncology & carcinogenesis ,Antibody Formation ,Immunology ,biology.protein ,Humans ,Medicine ,030211 gastroenterology & hepatology ,Tumor necrosis factor alpha ,Antibody ,business - Abstract
Anti-tumor necrosis factor α (anti-TNF) therapy has revolutionised the treatment of Crohn’s disease (CD). However, primary nonresponse occurs in an estimated 13-40% of patients1 and secondary loss of response in 23%-46% of patients after 12 months2. A challenging and important aspect of anti-TNF management is therefore to avoid the development of nonresponse, and identify/manage secondary nonresponse if it occurs.
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- 2017
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16. Plasma N-Glycan Signatures Are Associated With Features of Inflammatory Bowel Diseases
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Viktoria Dotz, Stephan R. Targan, Hazel E. Drummond, Gildardo Barron, Daisy Jonkers, Daniel Kolarich, Tim van den Heuvel, Gordan Lauc, David C. Wilson, Elaine R. Nimmo, Marco R. Bladergroen, Frano Vukovic, Manfred Wuhrer, Nicholas A. Kennedy, Hans Dalebout, Karli R. Reiding, Alex Adams, Iain K. Pemberton, Daryl L. Fernandes, Vito Annese, Maja Pučić-Baković, Fabrizio Bossa, Silvio Danese, Genadij Razdorov, Rahul Kalla, Irena Trbojević-Akmačić, Victoria Merrick, Igor Rudan, Evropi Theodoratou, Ray Boyapati, Nicholas T. Ventham, Noortje de Haan, Richard A. Gardner, Florent Clerc, Harry Campbell, Jasminka Krištić, Erdmann Rapp, Jerko Štambuk, Dermot P.B. McGovern, Mirna Šimurina, Natalia Manetti, Archana Shubhakar, Anna Kohn, Jack Satsangi, Paulina A. Urbanowicz, Marieke Pierik, Guinevere S. M. Kammeijer, Vlatka Zoldoš, Orazio Palmieri, Mislav Novokmet, Yurii S. Aulchenko, Renata D'Incà, Daniel I. R. Spencer, KR O’Leary, Olga Gornik, Marija Vilaj, Anna Latiano, Giuseppe Biscaglia, and Marija Pezer
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0301 basic medicine ,Adult ,Male ,medicine.medical_specialty ,Glycosylation ,Immunoglobulins ,Gastroenterology ,Inflammatory bowel disease ,Acute Phase Proteins ,MALDI-TOF-MS ,Molecular Marker ,03 medical and health sciences ,Crohn Disease ,Polysaccharides ,Internal medicine ,medicine ,Humans ,Fucosylation ,Crohn's disease ,Hepatology ,biology ,business.industry ,C-reactive protein ,Acute-phase protein ,Case-control study ,Middle Aged ,medicine.disease ,Ulcerative colitis ,carbohydrates (lipids) ,030104 developmental biology ,Logistic Models ,Case-Control Studies ,Cohort ,biology.protein ,Disease Progression ,Colitis, Ulcerative ,Female ,business ,Protein Processing, Post-Translational ,Biomarkers - Abstract
Background & Aims Biomarkers are needed for early detection of Crohn’s disease (CD) and ulcerative colitis (UC) or to predict patient outcomes. Glycosylation is a common and complex posttranslational modification of proteins that affects their structure and activity. We compared plasma N-glycosylation profiles between patients with CD or UC and healthy individuals (controls). Methods We analyzed the total plasma N-glycomes of 2635 patients with inflammatory bowel diseases and 996 controls by mass spectrometry with a linkage-specific sialic acid derivatization technique. Plasma samples were acquired from 2 hospitals in Italy (discovery cohort, 1989 patients with inflammatory bowel disease [IBD] and 570 controls) and 1 medical center in the United States (validation cohort, 646 cases of IBD and 426 controls). Sixty-three glycoforms met our criteria for relative quantification and were extracted from the raw data with the software MassyTools. Common features shared by the glycan compositions were combined in 78 derived traits, including the number of antennae of complex-type glycans and levels of fucosylation, bisection, galactosylation, and sialylation. Associations of plasma N-glycomes with age, sex, CD, UC, and IBD-related parameters such as disease location, surgery and medication, level of C-reactive protein, and sedimentation rate were tested by linear and logistic regression. Results Plasma samples from patients with IBD had a higher abundance of large-size glycans compared with controls, a decreased relative abundance of hybrid and high-mannose structures, lower fucosylation, lower galactosylation, and higher sialylation (α2,3- and α2,6-linked). We could discriminate plasma from patients with CD from that of patients with UC based on higher bisection, lower galactosylation, and higher sialylation (α2,3-linked). Glycosylation patterns were associated with disease location and progression, the need for a more potent medication, and surgery. These results were replicated in a large independent cohort. Conclusions We performed high-throughput analysis to compare total plasma N-glycomes of individuals with vs without IBD and to identify patterns associated with disease features and the need for treatment. These profiles might be used in diagnosis and for predicting patients’ responses to treatment.
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- 2017
17. Withdrawal of drug therapy for patients with quiescent Crohn's disease
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Ray Boyapati, Jean-Frederic Colombel, Brian G. Feagan, Reena Khanna, Carolina Palmela, Sonam D. Upadhyaya, Orli M. Silverberg, Claire E Parker, Vipul Jairath, and Joana Torres
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Medicine General & Introductory Medical Sciences ,medicine.medical_specialty ,Crohn's disease ,Withholding Treatment ,genetic structures ,business.industry ,education ,medicine.disease ,Surgery ,03 medical and health sciences ,Remission induction ,0302 clinical medicine ,Text mining ,Pharmacotherapy ,Internal medicine ,medicine ,030211 gastroenterology & hepatology ,Pharmacology (medical) ,030212 general & internal medicine ,business - Abstract
This is a protocol for a Cochrane Review (Intervention). The objectives are as follows: The primary objective of this review is to assess the feasibility and safety of discontinuing immunosuppressant or biologic drugs, administered alone or in combination, in patients with quiescent CD.
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- 2017
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18. Biomarkers in search of precision medicine in IBD
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Ray Boyapati, Rahul Kalla, Jack Satsangi, and Gwo-Tzer Ho
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0301 basic medicine ,medicine.medical_specialty ,Drug-Related Side Effects and Adverse Reactions ,Alternative medicine ,Bioinformatics ,03 medical and health sciences ,Disease susceptibility ,0302 clinical medicine ,Gastrointestinal Agents ,Drug Discovery ,Genetic predisposition ,Drug response ,Medicine ,Humans ,Genetic Predisposition to Disease ,Precision Medicine ,Hepatology ,business.industry ,Disease mechanisms ,Gastroenterology ,Precision medicine ,Inflammatory Bowel Diseases ,Gut microbiome ,digestive system diseases ,Gastrointestinal Microbiome ,030104 developmental biology ,Phenotype ,Treatment Outcome ,030211 gastroenterology & hepatology ,Identification (biology) ,business ,Biomarkers ,Genome-Wide Association Study - Abstract
The completion of the human genome project in 2003 represented a major scientific landmark, ushering in a new era with hopes and expectations of fresh insights into disease mechanisms and treatments. In inflammatory bowel disease (IBD), many important discoveries soon followed, notably the identification of >200 genetic susceptibility loci and characterization of the gut microbiome. As “big data”, driven by advances in technology, becomes increasingly available and affordable, individuals with IBD and clinicians alike yearn for tangible outcomes from the promise of “precision medicine”—precise diagnosis, monitoring, and treatment. Here, we provide a commentary on the prospects and challenges of precision medicine and biomarkers in IBD. We focus on the three key areas where precision IBD will have the most impact: (1) disease susceptibility, activity, and behavior; (2) prediction of drug response and adverse effects; and (3) identification of subphenotypic mechanisms to facilitate drug discovery and selection of new treatments in IBD.
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- 2016
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19. Gut mucosal DAMPs in IBD: From mechanisms to therapeutic implications
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Adriano G. Rossi, Ray Boyapati, Jack Satsangi, and Gwo-Tzer Ho
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0301 basic medicine ,Immunology ,Inflammation ,Disease ,S100A8 ,Translational Research, Biomedical ,Pathogenesis ,03 medical and health sciences ,medicine ,Animals ,Humans ,Immunology and Allergy ,Molecular Targeted Therapy ,Intestinal Mucosa ,business.industry ,food and beverages ,respiratory system ,Inflammatory Bowel Diseases ,medicine.disease ,Ulcerative colitis ,digestive system diseases ,body regions ,Biomarker ,030104 developmental biology ,Mucosal immunology ,Receptors, Pattern Recognition ,sense organs ,medicine.symptom ,Calprotectin ,business ,Leukocyte L1 Antigen Complex ,Biomarkers - Abstract
Endogenous damage-associated molecular patterns (DAMPs) are released during tissue damage and have increasingly recognized roles in the etiology of many human diseases. The inflammatory bowel diseases (IBD), ulcerative colitis (UC) and Crohn’s disease (CD), are immune-mediated conditions where high levels of DAMPs are observed. DAMPs such as calprotectin (S100A8/9) have an established clinical role as a biomarker in IBD. In this review, we use IBD as an archetypal common chronic inflammatory disease to focus on the conceptual and evidential importance of DAMPs in pathogenesis and why DAMPs represent an entirely new class of targets for clinical translation.
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- 2016
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20. Suspected acute hemolytic transfusion reaction mediated by anti-Dia
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Ray Boyapati, Ashwini Bennett, and Frank S. Hong
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Acute Hemolytic Transfusion Reaction ,Fetus ,business.industry ,Hematology ,General Medicine ,Disease ,medicine.disease ,Hemolysis ,Rho(D) immune globulin ,Isoantibodies ,Antigen ,Immunology ,medicine ,Immunology and Allergy ,business ,Antibody screening ,medicine.drug - Abstract
Anti-Dia can mediate hemolytic disease of the fetus and newborn, but it is unclear if it can cause hemolytic transfusion reactions (HTRs). To date, there has only been one report of a possible immediate HTR attributed to anti-Dia. Our case report details an immediate HTR due to anti-Dia in a patient with pre-existing liver failure. This reaction triggered multi-organ failure, and the patient subsequently died. This case also highlights the importance of considering HTRs even when routine antibody screening has been unremarkable, particularly when electronic crossmatch is used, because of the potential for an alloantibody against a low-prevalence antigen. Immunohematology 2015;31:163–165.
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- 2015
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21. MDR1-Deficiency Unmasks Mitochondrial Dysfunction as a Pathogenic Mechanism in IBD
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R. Balfour Sartor, Rhona Aird, Bo Liu, Takahiko Shimizu, Jack Satsangi, Ray Boyapati, Nicholas A. Kennedy, and Gwo-Tzer Ho
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Hepatology ,Mechanism (biology) ,Gastroenterology ,Biology ,Cell biology - Published
- 2017
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22. Serum Calprotectin: A Novel Diagnostic and Prognostic Marker in Inflammatory Bowel Diseases
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Nicholas A. Kennedy, Rahul Kalla, Nicholas T. Ventham, Rebecca J Pattenden, Gwo-Tzer Ho, Ray Boyapati, David C. Wilson, Hazel E. Drummond, Elaine R. Nimmo, Alex Adams, Micaela Rios Visconti, and Jack Satsangi
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0301 basic medicine ,Adult ,Male ,medicine.medical_specialty ,Kaplan-Meier Estimate ,Gastroenterology ,Sensitivity and Specificity ,03 medical and health sciences ,Young Adult ,fluids and secretions ,0302 clinical medicine ,Crohn Disease ,Internal medicine ,Area under curve ,medicine ,Odds Ratio ,Humans ,Prospective Studies ,Colitis ,Serum Albumin ,Proportional Hazards Models ,Hepatology ,business.industry ,digestive, oral, and skin physiology ,Disease progression ,Case-control study ,Inflammatory Bowel Diseases ,Middle Aged ,medicine.disease ,Prognosis ,digestive system diseases ,030104 developmental biology ,C-Reactive Protein ,Logistic Models ,Area Under Curve ,Case-Control Studies ,Multivariate Analysis ,Disease Progression ,030211 gastroenterology & hepatology ,Colitis, Ulcerative ,Female ,Calprotectin ,business ,Leukocyte L1 Antigen Complex - Abstract
IntroductionThere is an unmet need for novel blood based biomarkers that offer timely and accurate diagnostic and prognostic testing in Inflammatory Bowel Diseases (IBD). We aimed to investigate the diagnostic and prognostic utility of serum calprotectin (SC) in IBD.MethodsA total of 171 patients (n=96 IBD, n=75 non-IBD) were prospectively recruited. A multi biomarker model was derived using multivariable logistic regression analysis. Cox proportional hazards model was derived to assess the contribution of each variable to disease outcomes.ResultsSC correlated strongly with current biomarkers including faecal calprotectin (FC) (n=50, rho= 0.50, p=1.6x10-437 ). SC was the strongest individual predictor of IBD diagnosis (odds ratio (OR): 9.37(95%CI: 2.82-34.68), p=4.00×10-438 ) compared with other markers (CRP: OR 8.52(95%CI: 2.75-28.63), p=2.80×10-439 ); albumin: OR 6.12(95%CI: 1.82-22.16), p=0.004). In a subset of 50 patients with paired SC and FC, the area under receiver operating characteristic discriminating IBD from controls was better for FC than SC (0.99, (95% CI 0.87-1.00) and 0.87 (95% CI:0.78-0.97) respectively; p=0.01).43 At follow up (median 342 days; IQR: 88-563), SC predicted treatment escalation and/or44 surgery in IBD (HR 2.7, 95% CI: 1.1-4.9), in particular CD (HR 4.2, 95% CI 1.2-15.3).Page 2 of 73ScholarOne, 375 Greenbrier Drive, Charlottesville, VA, 22901American Journal of GastroenterologyFor Peer Review3A model incorporating SC and either CRP or albumin has a positive likelihood 45 ratio of 24.1446 for IBD. At 1 year, our prognostic model can predict treatment escalation in IBD in 65% of47 cases (95% CI: 43-79%) and 80% (95% CI: 31-94%) in CD if 2 or more blood marker48 criteria are met.49 Conclusions50 A diagnostic and prognostic model that combines SC and other blood-based biomarkers51 accurately predicts the inflammatory burden in IBD and has the potential to predict disease52 and its outcomes. Our data warrants further detailed exploration and validation in large multi53centre cohorts.
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- 2016
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23. Integrative epigenome-wide analysis demonstrates that DNA methylation may mediate genetic risk in inflammatory bowel disease
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KR O’Leary, Fernando Gomollón, Nicholas T. Ventham, Irena Trbojević Akmačić, Frano Vučković, Angie Fawkes, Fredrik A. Dahl, David C. Wilson, Jerko Štambuk, Fredrik Hjelm, Malcolm G. Dunlop, Simon Heath, Céline Sabatel, Eddie Modig, Noortje de Haan, Laura Cantoro, C. Casén, Maja Pučić-Baković, Jonas Christoffer Lindstrøm, Aina Elisabeth Fossum Moen, Mauro D'Amato, Dermot P.B. McGovern, Florent Clerc, Nicholas A. Kennedy, Anne Clémence Veillard, Daniel Bergemalm, Nicola Wrobel, Gunn S. Ekeland, Manfred Wuhrer, Colin L. Noble, Anna B. Frengen, Niklas Nordberg, Daisy Jonkers, Daryl L. Fernandes, Anette Ocklind, Dominique Poncelet, Rahul Kalla, Gionata Fiorino, Paolo Lionetti, Victoria Merrick, Petr Ricanek, Aleksandar Vojta, Alan G. Shand, Mikael Sundell, Johan D. Söderholm, Archana Shubhakar, Tim van den Heuve, Ivo Gut, Torbjørn Lindahl, Paula Dobrinić, Mislav Novokmet, G.C. Sturniolo, Natalia Manetti, Elaine R. Nimmo, Iain K. Permberton, Jasminka Krištić, Ray Boyapati, Igor Rudan, Olga Gornik, Anna Kohn, Leif Törkvist, Erik Pettersson, Gordan Lauc, Marieke Pierik, Ian D. Arnott, Lee Murphy, Monica Bayes, Ewa Ciemniejewska, Louise Evenden, Mats Gullberg, Jack Satsangi, Ivana Samaržija, Anna Latiano, Charlie W. Lees, Angelo Andriulli, Renata D'Incà, Jørgen Jahnsen, Renaud Schoemans, Panpan You, Yurii S. Aulchenko, Hazel E. Drummond, Gwo-Tzer Ho, Jonas Halfvarson, Vlatka Zoldoš, Tamara Gilchrist, Evropi Theorodorou, Marta Gut, Henrik Hjortswang, Daniel I. R. Spencer, Jude Gibson, Ray Doran, Silvio Danese, Simen Vatn, Alex Adams, Tone Møller Tannæs, Marija Klasić, Vito Annese, Daniel Ekman, Harry Campbell, Trond Espen Detlie, Dora Markulin, Åsa V. Keita, Guinevere S. M. Kammeijer, Janne Sølvernes, Morten H. Vatn, Richard A. Gardner, Daniel Kolarich, and Analytical Biochemistry
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Epigenomics ,Male ,0301 basic medicine ,inflammatory bowel disease ,DNA methylation ,epigenetics ,General Physics and Astronomy ,Bioinformatics ,Inflammatory bowel disease ,Linkage Disequilibrium ,Epigenesis, Genetic ,Cohort Studies ,0302 clinical medicine ,Crohn Disease ,Genotype ,Promoter Regions, Genetic ,skin and connective tissue diseases ,Epigenesis ,Multidisciplinary ,Middle Aged ,Protein-Tyrosine Kinases ,030220 oncology & carcinogenesis ,Female ,Adult ,Science ,Quantitative Trait Loci ,Biology ,Polymorphism, Single Nucleotide ,Article ,General Biochemistry, Genetics and Molecular Biology ,03 medical and health sciences ,microRNA ,medicine ,Humans ,Genetic Predisposition to Disease ,Epigenetics ,Gene Expression Profiling ,Membrane Proteins ,General Chemistry ,Epigenome ,medicine.disease ,digestive system diseases ,MicroRNAs ,030104 developmental biology ,Case-Control Studies ,Colitis, Ulcerative ,Gene-Environment Interaction ,Gene expression ,sense organs - Abstract
Epigenetic alterations may provide important insights into gene-environment interaction in inflammatory bowel disease (IBD). Here we observe epigenome-wide DNA methylation differences in 240 newly-diagnosed IBD cases and 190 controls. These include 439 differentially methylated positions (DMPs) and 5 differentially methylated regions (DMRs), which we study in detail using whole genome bisulphite sequencing. We replicate the top DMP (RPS6KA2) and DMRs (VMP1, ITGB2 and TXK) in an independent cohort. Using paired genetic and epigenetic data, we delineate methylation quantitative trait loci; VMP1/microRNA-21 methylation associates with two polymorphisms in linkage disequilibrium with a known IBD susceptibility variant. Separated cell data shows that IBD-associated hypermethylation within the TXK promoter region negatively correlates with gene expression in whole-blood and CD8+ T cells, but not other cell types. Thus, site-specific DNA methylation changes in IBD relate to underlying genotype and associate with cell-specific alteration in gene expression., Epigenetic perturbations may be an important factor in diseases where both genes and environment play a role. Here, Ventham and colleagues show that DNA methylation changes in inflammatory bowel disease are related to the underlying genotype, and are associated with cell-specific changes to gene expression.
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- 2016
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24. Editorial: what can be done when infliximab stops working in ulcerative colitis?
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G. T. Ho, Jack Satsangi, and Ray Boyapati
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0301 basic medicine ,Male ,medicine.medical_specialty ,Hepatology ,business.industry ,Immunologic Factors ,Gastroenterology ,medicine.disease ,Ulcerative colitis ,Dermatology ,Infliximab ,03 medical and health sciences ,030104 developmental biology ,0302 clinical medicine ,Medicine ,Humans ,030211 gastroenterology & hepatology ,Pharmacology (medical) ,Colitis, Ulcerative ,Female ,business ,medicine.drug - Abstract
Currently the clinician managing secondary loss of anti‐tumour necrosis factor (TNF)‐α response in ulcerative colitis (UC) is faced with a difficult dilemma. Should he/she escalate the anti‐TNFα dose, switch to an alternative anti‐TNFα or biological (e.g. vedolizumab), initiate a thiopurine (if naïve to this) or a course of glucocorticosteroids or consider surgery as a curative option? In a progressively unwell individual with a severe flare, the window for decision‐making is narrow. More broadly, what is the threshold for anti‐TNFα (or any biologic) in UC and what is the long‐term exit strategy of those maintained on anti‐TNFα therapies if they are stable in remission or experience a flare, and what is the most cost‐effective approach?
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- 2015
25. Risk stratification in acute upper GI bleeding: comparison of the AIMS65 score with the Glasgow-Blatchford and Rockall scoring systems
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Rhys Vaughan, Marcus Robertson, Peter W Angus, James Wei, Steve Lontos, Avik Majumdar, Tom Worland, Ryma Terbah, William Chung, and Ray Boyapati
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Male ,Blood transfusion ,medicine.medical_treatment ,Blood Pressure ,Comorbidity ,Esophageal Diseases ,Severity of Illness Index ,law.invention ,Blood Urea Nitrogen ,Hemoglobins ,0302 clinical medicine ,Community-acquired pneumonia ,law ,Recurrence ,Glasgow-Blatchford score ,030212 general & internal medicine ,Endoscopy, Digestive System ,Hospital Mortality ,Aged, 80 and over ,Gastroenterology ,Age Factors ,Middle Aged ,Prognosis ,Intensive care unit ,Hospitalization ,Intensive Care Units ,Area Under Curve ,030211 gastroenterology & hepatology ,Female ,Risk assessment ,Gastrointestinal Hemorrhage ,medicine.medical_specialty ,Stomach Diseases ,Risk Assessment ,03 medical and health sciences ,Internal medicine ,Severity of illness ,medicine ,Humans ,Radiology, Nuclear Medicine and imaging ,Blood Transfusion ,International Normalized Ratio ,Serum Albumin ,Aged ,business.industry ,Emergency department ,Length of Stay ,medicine.disease ,Surgery ,ROC Curve ,Rockall score ,business - Abstract
Background and Aims The American College of Gastroenterology recommends early risk stratification in patients presenting with upper GI bleeding (UGIB). The AIMS65 score is a risk stratification score previously validated to predict inpatient mortality. The aim of this study was to validate the AIMS65 score as a predictor of inpatient mortality in patients with acute UGIB and to compare it with established pre- and postendoscopy risk scores. Methods ICD-10 (International Classification of Diseases, Tenth Revision) codes identified patients presenting with UGIB requiring endoscopy. All patients were risk stratified by using the AIMS65, Glasgow-Blatchford score (GBS), pre-endoscopy Rockall, and full Rockall scores. The primary outcome was inpatient mortality. Secondary outcomes were a composite endpoint of inpatient mortality, rebleeding, and endoscopic, radiologic, or surgical intervention; blood transfusion requirement; intensive care unit (ICU) admission; rebleeding; and hospital length of stay. The area under the receiver-operating characteristic curve (AUROC) was calculated for each score. Results Of the 424 study patients, 18 (4.2%) died and 69 (16%) achieved the composite endpoint. The AIMS65 score was superior to both the GBS (AUROC, 0.80 vs 0.76, P P = .001) and equivalent to the full Rockall score (0.78, P = .18) in predicting inpatient mortality. The AIMS65 score was superior to all other scores in predicting the need for ICU admission and length of hospital stay. AIMS65, GBS, and full Rockall scores were equivalent (AUROCs, 0.63 vs 0.62 vs 0.63, respectively) and superior to pre-endoscopy Rockall (AUROC, 0.55) in predicting the composite endpoint. GBS was superior to all other scores for predicting blood transfusion. Conclusion The AIMS65 score is a simple risk stratification score for UGIB with accuracy superior to that of GBS and pre-endoscopy Rockall scores in predicting in-hospital mortality and the need for ICU admission.
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- 2015
26. P055 Mitochondrial DNA is a damage-associated molecular pattern released during active IBD promoting TLR9-mediated inflammation
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Nicholas T. Ventham, Jack Satsangi, Ray Boyapati, Adriano G. Rossi, David A. Dorward, Rahul Kalla, Arina Tamborska, and Gwo-Tzer Ho
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0301 basic medicine ,Mitochondrial DNA ,business.industry ,Gastroenterology ,Damage-associated molecular pattern ,TLR9 ,Inflammation ,General Medicine ,Mitochondrion ,medicine.disease ,Molecular biology ,Cell biology ,Toll-Like Receptor 9 ,03 medical and health sciences ,030104 developmental biology ,medicine ,medicine.symptom ,Colitis ,business ,Gene - Published
- 2017
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27. Mitochondrial DNA is a Damage-Associated Molecular Pattern (DAMP) Released during Active IBD Promoting TLR9-Mediated Inflammation
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Rahul Kalla, Arina Tamborska, Adriano G. Rossi, David A. Dorward, Jack Satsangi, Gwo-Tzer Ho, Nicholas T. Ventham, and Ray Boyapati
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0301 basic medicine ,Damp ,Mitochondrial DNA ,Hepatology ,Gastroenterology ,Damage-associated molecular pattern ,TLR9 ,Inflammation ,Biology ,Cell biology ,03 medical and health sciences ,030104 developmental biology ,Biochemistry ,medicine ,medicine.symptom - Published
- 2017
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28. Psychological Aspects of Inflammatory Bowel Disease
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Antonina Mikocka-Walus, Lesley Graff, Antonino Spinelli, C.Janneke Van der Woude, Gregory Thomas Charles Moore, and Ray Boyapati
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Biopsychosocial model ,medicine.medical_specialty ,business.industry ,medicine.disease ,Mental health ,Inflammatory bowel disease ,digestive system diseases ,Medicine ,Anxiety ,Western world ,Psychological aspects ,medicine.symptom ,business ,Psychiatry ,Psychosocial ,Depression (differential diagnoses) - Abstract
In the Western world around 360 in every 100,000 individuals have inflammatory bowel disease (IBD), a relapsing-remitting autoimmune disease that affects the gastrointestinal tract. Its impact on individual functioning across physical and psychosocial domains is significant and psychological distress is a common feature, with research suggesting that active IBD is associated with one of the highest rates of depression and anxiety of all chronic illnesses. Despite the high prevalence of mental health co-morbidities in IBD, psychological illness remains largely undertreated, with studies showing that 60% of IBD patients experiencing mental health problems do not receive adequate help. In this book, Knowles and Mikocka-Walus bring together world experts who practice integrated and holistic approach in their care for IBD patients, to provide an overview of research across a range of topics associated with the biopsychosocial treatment of IBD. Each chapter provides an up-to-date comprehensive consolidation and evaluation of the current literature alongside recommendations for practice.
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- 2014
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29. AIMS65: a promising upper gastrointestinal bleeding risk score but further validation required
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Ray Boyapati, Marcus Robertson, and Avik Majumdar
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Adult ,Male ,medicine.medical_specialty ,Gastrointestinal bleeding ,Peptic Ulcer ,Time Factors ,Adolescent ,Brief Article ,Population ,Hemorrhage ,Disease ,Sensitivity and Specificity ,digestive system ,Severity of Illness Index ,Letters To The Editor ,Young Adult ,Predictive Value of Tests ,Risk Factors ,medicine ,Humans ,education ,Aged ,Retrospective Studies ,education.field_of_study ,Framingham Risk Score ,medicine.diagnostic_test ,business.industry ,General surgery ,Gastroenterology ,Endoscopy ,General Medicine ,Middle Aged ,Prognosis ,medicine.disease ,digestive system diseases ,Surgery ,Treatment Outcome ,Peptic Ulcer Hemorrhage ,Area Under Curve ,Peptic ulcer ,Hemostasis ,Female ,Upper gastrointestinal bleeding ,Emergency Service, Hospital ,business - Abstract
To evaluate the applicability of AIMS65 scores in predicting outcomes of peptic ulcer bleeding.This was a retrospective study in a single center between January 2006 and December 2011. We enrolled 522 patients with upper gastrointestinal haemorrhage who visited the emergency room. High-risk patients were regarded as those who had re-bleeding within 30 d from the first endoscopy as well as those who died within 30 d of visiting the Emergency room. A total of 149 patients with peptic ulcer bleeding were analysed, and the AIMS65 score was used to retrospectively predict the high-risk patients.A total of 149 patients with peptic ulcer bleeding were analysed. The poor outcome group comprised 28 patients [male: 23 (82.1%) vs female: 5 (10.7%)] while the good outcome group included 121 patients [male: 93 (76.9%) vs female: 28 (23.1%)]. The mean age in each group was not significantly different. The mean serum albumin levels in the poor outcome group were slightly lower than those in the good outcome group (P = 0.072). For the prediction of poor outcome, the AIMS65 score had a sensitivity of 35.5% (95%CI: 27.0-44.8) and a specificity of 82.1% (95%CI: 63.1-93.9) at a score of 0. The AIMS65 score was insufficient for predicting outcomes in peptic ulcer bleeding (area under curve = 0.571; 95%CI: 0.49-0.65).The AIMS65 score may therefore not be suitable for predicting clinical outcomes in peptic ulcer bleeding. Low albumin levels may be a risk factor associated with high mortality in peptic ulcer bleeding.
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- 2014
30. Acute liver injury secondary to sertraline
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Ray Boyapati, Christopher Foong Dhin Li Wai Suen, Anouk Dev, and Ian Simpson
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Adult ,medicine.medical_specialty ,Nausea ,Biopsy ,Gastroenterology ,Article ,Diagnosis, Differential ,Liver disease ,Pregnancy ,Internal medicine ,Sertraline ,medicine ,Humans ,Depression (differential diagnoses) ,Hepatitis ,medicine.diagnostic_test ,business.industry ,Depression ,General Medicine ,medicine.disease ,Antidepressive Agents ,Pregnancy Complications ,Endocrinology ,Liver ,Vomiting ,Female ,medicine.symptom ,Chemical and Drug Induced Liver Injury ,business ,Liver function tests ,medicine.drug - Abstract
Sertraline is widely prescribed to treat depression and anxiety disorders. However, hepatitis secondary to its use is a rare entity. We report the case of a 26-year-old woman in her 20th week of pregnancy presented with nausea, vomiting, malaise and dark urine. This occurred 6 months after sertraline 50 mg daily was started for the treatment of depression. Three weeks prior to her presentation, the dose of sertraline was increased to 100 mg daily. The patient's liver biochemical profile demonstrated increased transaminases. The biopsy of the liver showed lobular hepatitis, with a mild prominence of eosinophils, suggestive of a drug-induced or toxin-induced aetiology. Extensive biochemical work-up failed to show any other pathology to account for her hepatitis. Liver function tests normalised after cessation of sertraline, indicating a probable association between sertraline use and acute hepatocellular injury in our patient.
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- 2013
31. Advances in the understanding of mitochondrial DNA as a pathogenic factor in inflammatory diseases
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Gwo-Tzer Ho, Arina Tamborska, David A. Dorward, and Ray Boyapati
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Cellular Death & Stress Responses ,0301 basic medicine ,Pediatric Problems in Critical Care ,inflammatory diseases ,Physiology ,Autoimmunity ,Review ,Coronary Artery Disease ,mitochondrial DNA ,Neurobiology of Disease & Regeneration ,Cell Signaling ,Genetics of the Immune System ,Mitochondrial homeostasis ,General Pharmacology, Toxicology and Pharmaceutics ,Danger signal ,Immune Response ,mtDNA ,Articles ,General Medicine ,Innate Immunity ,3. Good health ,Medical Microbiology ,Liver Biology & Pathobiology ,Emergency Medicine ,medicine.symptom ,Mitochondrial DNA ,Nuclear Structure & Function ,Inflammation ,Biology ,General Biochemistry, Genetics and Molecular Biology ,Sepsis ,Immunopharmacology & Hematologic Pharmacology ,03 medical and health sciences ,mtDNA-mediated inflammation ,Leukocyte Signaling & Gene Expression ,Virology ,medicine ,Cellular Microbiology & Pathogenesis ,Diabetes & Obesity ,Immune & Inflammatory Rheumatic Diseases (incl. Arthritis) ,Immunity to Infections ,Heart Failure ,Sepsis & Multiple Organ Failure in Critical Care ,Innate immune system ,General Immunology and Microbiology ,Bleeding & Coagulation Disorders ,Acute Cardiovascular Problems ,Pathogenic factor ,medicine.disease ,Etiology, Pathogenesis & Animal Models of Rheumatic Disease ,030104 developmental biology ,Immunology ,Acute Renal Failure ,Clinical Immunology ,Steatohepatitis ,Membranes & Sorting - Abstract
Mitochondrial DNA (mtDNA) has many similarities with bacterial DNA because of their shared common ancestry. Increasing evidence demonstrates mtDNA to be a potent danger signal that is recognised by the innate immune system and can directly modulate the inflammatory response. In humans, elevated circulating mtDNA is found in conditions with significant tissue injury such as trauma and sepsis and increasingly in chronic organ-specific and systemic illnesses such as steatohepatitis and systemic lupus erythematosus. In this review, we examine our current understanding of mtDNA-mediated inflammation and how the mechanisms regulating mitochondrial homeostasis and mtDNA release represent exciting and previously under-recognised important factors in many human inflammatory diseases, offering many new translational opportunities.
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- 2017
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32. P037 MDR1-deficiency unmasks mitochondrial dysfunction as a pathogenic mechanism in IBD
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Ray Boyapati, B. Sartor, J. Satsangi, R. Aird, Nicholas A. Kennedy, G.-T. Ho, B. Liu, and T. Shimizu
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business.industry ,Mechanism (biology) ,Immunology ,Gastroenterology ,Medicine ,General Medicine ,business - Published
- 2017
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33. Portal biliary ductopathy caused by cavernous transformation of the portal vein
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Ray Boyapati, Ferry Rusli, and Jeffrey Chu Nan Chong
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Adult ,Abdominal pain ,medicine.medical_specialty ,Portal venous pressure ,Common Bile Duct Diseases ,Epigastric pain ,Article ,Diagnosis, Differential ,Liver Function Tests ,Hypertension, Portal ,medicine ,Humans ,Ultrasonography ,Cholangiopancreatography, Endoscopic Retrograde ,Endoscopic retrograde cholangiopancreatography ,medicine.diagnostic_test ,Common bile duct ,business.industry ,Portal Vein ,General Medicine ,medicine.disease ,Magnetic Resonance Imaging ,Portal vein thrombosis ,Abdominal Pain ,medicine.anatomical_structure ,Common hepatic duct ,Portal hypertension ,Female ,Radiology ,medicine.symptom ,business - Abstract
A 42-year-old woman presented with a 1-week history of epigastric pain and deranged liver function tests (LFTs) on a background of known portal vein thrombosis (PVT) with cavernous transformation. Imaging with ultrasound, CT and MR cholangiopancreatography demonstrated known PVT, with distortion of the common bile duct and a bulky head/proximal body of the pancreas, thought to be due to mass effect from cavernous transformation related to PVT. At endoscopic retrograde cholangiopancreatography, the common hepatic duct was noted to be smaller in diameter, without any filling defects or discrete strictures. Sphincterotomy and balloon trawl was performed, with subsequent improvement of the woman9s LFTs and abdominal pain.
- Published
- 2013
34. PWE-025 Serum Calprotectin – A Novel Diagnostic and Prognostic Marker in Inflammatory Bowel Diseases
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Ray Boyapati, R Pattenden, Nicholas A. Kennedy, Nicholas T. Ventham, J. Satsangi, Rahul Kalla, David C. Wilson, Elaine R. Nimmo, Micaela Rios Visconti, Alex Adams, Hazel E. Drummond, and G.-T. Ho
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0301 basic medicine ,medicine.medical_specialty ,Receiver operating characteristic ,Proportional hazards model ,business.industry ,Gastroenterology ,Odds ratio ,medicine.disease ,Logistic regression ,Ulcerative colitis ,Likelihood ratios in diagnostic testing ,Faecal calprotectin ,03 medical and health sciences ,030104 developmental biology ,0302 clinical medicine ,Internal medicine ,Immunology ,medicine ,030211 gastroenterology & hepatology ,Calprotectin ,business - Abstract
Introduction There is an unmet need for novel blood based biomarkers that offer timely and accurate diagnostic and prognostic testing in Inflammatory Bowel Diseases (IBD). We aimed to investigate the diagnostic and prognostic utility of serum calprotectin (SC) in IBD Methods A total of 156 patients (82 IBD and 74 non-IBD) were sampled within 90 days from diagnosis (median 0 days; IQR 0–7). A multibiomarker diagnostic and prognostic model was derived using multivariable logistic regression analysis. Treatment escalation was defined as the need for escalation and establishment of 2 or more immunomodulatory therapies and/or surgery for disease flare after initial induction of disease remission (criteria previously used by Lee et al) (1). Cox proportional hazards model was derived to assess the contribution of each variable to disease outcomes Results SC correlated strongly with current biomarkers including CRP (rho = 0.60, p = 1.4x10−16) faecal calprotectin (FC) (rho = 0.51, p = 1.6x10−4). Paired FC was available within 30 days (median 0 days, IQR: -4 to5 days) of SC in 50 patients (IBD n = 30, non-IBD n = 20).The area under receiver operating characteristic discriminating IBD from controls was similar for FC and SC(0.95, 95% CI 0.87–1.00 and 0.89, 95%CI 0.81–0.98 respectively;p = 0.36). SC was the strongest individual predictor of IBD diagnosis (odds ratio (OR): 12.33 (95% CI 4.48–38.33, p = 3.5×10−6) compared with other markers (CRP: OR 4.44, CI 1.58–12.90; albumin: OR 5.65, CI 1.98–17.16). At follow up (median 342 days; IQR: 88–563),a total of 1 (2%), 16 (47%),23 (51%) patients required treatment escalation in the IBDU, CD and UC group respectively.SC predicted treatment escalation and/or surgery in IBD (HR 2.4, 95% CI: 1.1–4.9), in particular CD (HR 4.1, 95% CI 1.1–14.7). A model incorporating SC, CRP and albumin has a positive likelihood ratio of 20.03 for IBD.At 1 year, our prognostic model can predict treatment escalation in IBD in 65% of cases (95% CI: 43–79%) and 80% (95% CI: 31–94%) in CD if 2 or more blood marker criteria are met. Conclusion Sampling faeces can be a hurdle for patients and some individuals can decline FC testing. These factors impact on the practical utility of FC.SC shows promise as a diagnostic and prognostic biomarker in IBD. Our findings warrant further exploration and validation within large multicentre cohorts. Reference 1 Lee JC, et al. Gene expression profiling of CD8+ T cells predicts prognosis in patients with Crohn disease and ulcerative colitis. J Clin Invest 2011;121:4170–9. Disclosure of Interest None Declared
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- 2016
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35. To TOE or not to TOE? That is the question in patients with portal hypertension and varices
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Christopher, Leung, Sern Wei, Yeoh, Lucy Y, Lim, Ray, Boyapati, Adam G, Testro, Rhys, Vaughan, Kaye, Marion, Louise M, Burrell, and Peter W, Angus
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Liver Cirrhosis ,Humans ,Liver Transplantation - Published
- 2012
36. An Unusual Presentation of Herpes Simplex Virus Encephalitis
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Michael Geluk, George K. Papadopoulos, Paul D R Johnson, James S Olver, and Ray Boyapati
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business.industry ,viruses ,lcsh:R ,Herpes simplex virus encephalitis ,lcsh:Medicine ,Case Report ,General Medicine ,medicine.disease_cause ,Virology ,law.invention ,Cerebrospinal fluid ,Herpes simplex virus ,law ,Mental state ,Medicine ,Hsv encephalitis ,Presentation (obstetrics) ,business ,Polymerase chain reaction - Abstract
We present a case of a 65-year-old man with an acute alteration in mental state that was initially diagnosed as a functional psychiatric condition. After extensive workup, herpes simplex virus type 1 (HSV-1) was detected in the patient’s cerebrospinal fluid (CSF) by polymerase chain reaction (PCR), and he responded rapidly to treatment with acyclovir. The case illustrates the importance of actively excluding organic causes in such patients, the need to have a low threshold of suspicion for HSV encephalitis, and the central role of CSF PCR testing for the diagnosis of HSV encephalitis, even in the absence of CSF biochemical abnormalities.
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- 2012
37. Young woman with recurrent vomiting associated with weight loss
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Ray Boyapati, Mayur Garg, Peter Crowley, and Nathan J Connelly
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Adult ,Diarrhea ,Pediatrics ,medicine.medical_specialty ,Nausea ,Vomiting ,Constriction, Pathologic ,Diagnosis, Differential ,Weight loss ,Intestine, Small ,Weight Loss ,Back pain ,medicine ,Humans ,Ulcer ,Past medical history ,medicine.diagnostic_test ,business.industry ,Codeine ,Gastroenterology ,Magnetic Resonance Imaging ,Enteritis ,Erythrocyte sedimentation rate ,Anesthesia ,Female ,medicine.symptom ,business ,medicine.drug - Abstract
A 39-year-old woman presented with an 18-month history of episodic severe nausea, vomiting, diarrhoea and 30 kg weight loss requiring multiple hospital admissions. Her past medical history included hypothyroidism, migraines and lower back pain for which she used paracetamol, codeine and intermittent diclofenac up to 150 mg per day for up to a week during exacerbations. C reactive protein and erythrocyte sedimentation rate were raised up to 89 mg/l and 80 mm/h respectively during some of these admissions. She was iron, vitamin B12 and …
- Published
- 2012
38. Hepatobiliary and pancreatic: Systemic mastocytosis with portal hypertension
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D Wong, Peter W Angus, Ray Boyapati, and Julie Lokan
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medicine.medical_specialty ,Hepatology ,business.industry ,X ray computed ,Internal medicine ,Gastroenterology ,medicine ,Portal hypertension ,Systemic mastocytosis ,medicine.disease ,business ,Liver pathology - Published
- 2014
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39. 155 Risk Stratification in Acute Upper Gastrointestinal Bleeding: AIMS65 Is Superior to Glasgow-Blatchford and Rockall Scoring Systems in Predicting Inpatient Mortality
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Rhys Vaughan, James Wei, Avik Majumdar, Ryma Terbah, Steve Lontos, Ray Boyapati, Marcus Robertson, and William Chung
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medicine.medical_specialty ,Inpatient mortality ,business.industry ,Risk stratification ,Gastroenterology ,medicine ,Radiology, Nuclear Medicine and imaging ,Acute upper gastrointestinal bleeding ,Intensive care medicine ,business - Published
- 2014
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40. One fifth of hospitalizations for peptic ulcer-related bleeding are potentially preventable
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Ray Boyapati, Bei Ye, Anuk Kruavit, Rhys Vaughan, Sim Ye Ong, Sanjay Nandurkar, Nora Lee, Mayur Garg, and Peter R. Gibson
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Male ,medicine.medical_specialty ,Time Factors ,Victoria ,medicine.drug_class ,Peptic ,Proton-pump inhibitor ,Peptic Ulcer Hemorrhage ,Risk Assessment ,digestive system ,Endoscopy, Gastrointestinal ,Duodenitis ,Predictive Value of Tests ,Risk Factors ,Retrospective Study ,Internal medicine ,Odds Ratio ,medicine ,Humans ,Hospital Mortality ,Retrospective Studies ,Chi-Square Distribution ,business.industry ,Gastroenterology ,Proton Pump Inhibitors ,Retrospective cohort study ,General Medicine ,Odds ratio ,Length of Stay ,Middle Aged ,medicine.disease ,digestive system diseases ,Surgery ,Hospitalization ,Logistic Models ,Gastritis ,Predictive value of tests ,Female ,medicine.symptom ,Gastrointestinal Hemorrhage ,business - Abstract
To calculate the proportion of potentially preventable hospitalizations due to peptic ulcer disease (PUD), erosive gastritis (EG) or duodenitis (ED).Retrospective cohort study using ICD-10 codes to identify all patients with upper gastrointestinal hemorrhage secondary to endoscopically proven PUD, EG or ED during the period from March 2007 to October 2010 in three major metropolitan hospitals in Melbourne, Australia. Patients were divided into "high risk" (those who would benefit from gastroprotection) and "not high risk" groups as defined by established guidelines. Mean Rockall score, transfusion requirement, length of stay, rebleeding rates, need for surgery and in-hospital mortality was compared between "high risk" and "not high risk" groups. Within the "high risk" group, those on gastroprotection and those with no gastroprotection were also compared.Five hundred and seven patients were included for analysis of which 174 were classified as high risk. Median values of complete Rockall Score (5 vs 4, P = 0.002) and length of stay (5 d vs 4 d, P = 0.04) were higher in the high risk group but in-hospital mortality was lower (0.6% vs 3.9%, P = 0.03). 130 out of the 174 patients in the high risk group were not taking recommended gastroprotective therapy prior to hospitalization. Past history of PUD (OR = 3.7, P = 0.006) and clopidogrel use (OR = 3.2, P = 0.007) significantly predicted prescription of gastroprotective therapy. Using proton pump inhibitor protection rates of 50%-85% from published studies, an estimation of 13% to 22% of the total number of the hospitalizations due to PUD or EG/ED related bleeding may have been preventable.Up to one fifth of all hospitalizations for bleeding secondary to PUD or EG/ED are potentially preventable.
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- 2014
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41. Systematic Review of Effects of Withdrawal of Immunomodulators or Biologic Agents From Patients With Inflammatory Bowel Disease
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Jack Satsangi, Ray Boyapati, Joana Torres, Jean-Frederic Colombel, Nicholas A. Kennedy, and Edouard Louis
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medicine.medical_specialty ,Time Factors ,Combination therapy ,Disease ,Inflammatory bowel disease ,Drug Administration Schedule ,law.invention ,Crohn Disease ,Randomized controlled trial ,Recurrence ,Risk Factors ,law ,Internal medicine ,medicine ,Humans ,Immunologic Factors ,Biological Products ,Crohn's disease ,Hepatology ,Tumor Necrosis Factor-alpha ,business.industry ,Remission Induction ,Gastroenterology ,medicine.disease ,Ulcerative colitis ,3. Good health ,Surgery ,Discontinuation ,Anti-Tumor Necrosis Factor Therapy ,Treatment Outcome ,Colitis, Ulcerative ,Drug Therapy, Combination ,business - Abstract
Little is known about the optimal duration of therapy with an anti-tumor necrosis factor (TNF) agent and/or an immunomodulator for patients with inflammatory bowel disease (IBD). We performed a systematic search of the literature to identify studies reporting after de-escalation (drug cessation or dose reduction) of anti-TNF agents and/or immunomodulators in patients in remission from IBD. Studies were reviewed according to the type of IBD and drug. Rates of relapse, factors associated with relapse, and response to re-treatment were determined. Our search yielded 6315 unique citations; we analyzed findings from 69 studies (18 on de-escalation [drug cessation or dose reduction] of immunomodulator monotherapy, 8 on immunomodulator de-escalation from combination therapy, and 43 on de-escalation of anti-TNF agents, including 3 during pregnancy) comprising 4672 patients. Stopping immunomodulator monotherapy after a period of remission was associated with high rates of relapse in patients with Crohn's disease or ulcerative colitis (approximately 75% of patients experienced a relapse within 5 years after therapy was stopped). Most studies of patients with Crohn's disease who discontinued an immunomodulator after combination therapy found that rates of relapse did not differ from those of patients who continued taking the drug (55%-60% had disease relapse 24 months after they stopped taking the immunomodulator). The only study in patients with ulcerative colitis supported continued immunomodulator use. Approximately 50% of patients who discontinued anti-TNF agents after combination therapy maintained remission 24 months later, but the proportion in remission decreased with time. Markers of disease activity, poor prognostic factors, and complicated or relapsing disease course were associated with future relapse. In conclusion, based on a systematic review, 50% or more of patients with IBD who cease therapy have a disease relapse. Further studies are required to accurately identify subgroups of patients who are good candidates for discontinuation of treatment. The decision to withdraw a drug should be made for each individual based on patient preference, disease markers, consequences of relapse, safety, and cost.
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42. Glycosylation of Immunoglobulin G Associates With Clinical Features of Inflammatory Bowel Diseases
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Anna Latiano, Gordan Lauc, Paula Dobrinić, Mislav Novokmet, Carol J. Landers, Dermot P.B. McGovern, Igor Rudan, Ivana Samaržija, Alan G. Shand, Yurii S. Aulchenko, Marieke Pierik, Charlie W. Lees, Harry Campbell, Ray Boyapati, Lee Murphy, Malcolm G. Dunlop, Silvio Danese, Tim van den Heuve, Gionata Fiorino, Evropi Theorodorou, Richard A. Gardner, G.C. Sturniolo, Noortje de Haan, Natalia Manetti, Jude Gibson, Nicholas A. Kennedy, Ray Doran, Frano Vučković, Angie Fawkes, Manfred Wuhrer, Colin L. Noble, Daisy Jonkers, Olga Gornik, Genadij Razdorov, David Falck, Paolo Lionetti, Daryl L. Fernandes, Tamara Gilchrist, Anna Khon, Renata D'Incà, Stephan R. Targan, Jerko Štambuk, Louise Evenden, Florent Clerc, Gwo-Tzer Ho, Mirna Šimurina, Aleksandar Vojta, Laura Cantoro, Ian D. Arnott, Maja Pučić-Baković, Daniel I. R. Spencer, Marla Dubinsky, Marija Klasić, Nicola Wrobel, Daniel Kolarich, Vlatka Zoldoš, Vito Annese, Irena Trbojević-Akmačić, Victoria Merrick, Jasminka Krištić, Guinevere S. M. Kammeijer, Angelo Andriulli, Dora Markulin, Archana Shubhakar, Iain K. Permberton, Simurina, M, de Haan, N, Vuckovic, F, Kennedy, Na, Stambuk, J, Falck, D, Trbojevic-Akmacic, I, Clerc, F, Razdorov, G, Khon, A, Latiano, A, D'Inca, R, Danese, S, Targan, S, Landers, C, Dubinsky, M, Mcgovern, Dpb, Annese, V, Wuhrer, M, and Lauc, G
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0301 basic medicine ,Male ,Glycosylation ,IBD ,glycans ,glycopeptides ,biomarker ,Azathioprine ,Gastroenterology ,Inflammatory bowel disease ,Severity of Illness Index ,Immunoglobulin G ,Crohn Disease ,Risk Factors ,Odds Ratio ,Medicine ,Crohn's disease ,biology ,Area under the curve ,Glycopeptides ,Middle Aged ,Prognosis ,Ulcerative colitis ,3. Good health ,Italy ,Area Under Curve ,Biomarker (medicine) ,Female ,medicine.drug ,Adult ,medicine.medical_specialty ,Glycans ,Article ,03 medical and health sciences ,Predictive Value of Tests ,Internal medicine ,Humans ,Hepatology ,business.industry ,Odds ratio ,Biomarker ,medicine.disease ,United States ,Immunoglobulin Fc Fragments ,030104 developmental biology ,Logistic Models ,ROC Curve ,Case-Control Studies ,biology.protein ,Colitis, Ulcerative ,business ,Protein Processing, Post-Translational - Abstract
BACKGROUND AND AIMS: Causes of inflammatory bowel diseases are not well understood and the most prominent forms, Crohn's disease (CD) and ulcerative colitis (UC), are sometimes hard to distinguish. Glycosylation of IgG has been associated with CD and UC. IgG Fc-glycosylation affects IgG effector functions. We evaluated changes in IgG Fc- glycosylation associated with UC and CD, as well as with disease characteristics in different patient groups. METHODS: We analyzed 3441 plasma samples obtained from 2 independent cohorts of patients with CD (874 patients from Italy and 391 from the United States) or UC (1056 from Italy and 253 from the US and healthy individuals [controls] ; 427 in Italy and 440 from the United States). IgG Fc-glycosylation (tryptic glycopeptides) was analyzed by liquid chromatography coupled to mass spectrometry. We analyzed associations between disease status (UC vs controls, CD vs controls, and UC vs CD) and glycopeptide traits, and associations between clinical characteristics and glycopeptide traits, using a logistic regression model with age and sex included as covariates. RESULTS: Patients with CD or UC had lower levels of IgG galactosylation than controls. For example, the odds ratio (OR) for IgG1 galactosylation in patients with CD was 0.59 (95% confidence interval [CI], 0.51-0.69) and for patients with UC was 0.81 (95% CI, 0.71-0.92). Fucosylation of IgG was increased in patients with CD vs controls (for IgG1: OR, 1.27 ; 95% CI, 1.12-1.44), but decreased in patients with UC vs controls (for IgG23: OR, 0.72 ; 95% CI, 0.63-0.82). Decreased galactosylation associated with more severe CD or UC, including the need for surgery in patients with UC vs controls (for IgG1: OR, 0.69 ; 95% CI, 0.54-0.89) and in patients with CD vs controls (for IgG23: OR, 0.78 ; 95% CI, 0.66-0.91). CONCLUSIONS: In a retrospective analysis of plasma samples from patients with CD or UC, we associated levels of IgG Fc-glycosylation with disease (compared to controls) and its clinical features. These findings could increase our understanding of mechanisms of CD and UC pathogenesis and be used to develop diagnostics or guide treatment.
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43. AIMS65: a promising upper gastrointestinal bleeding risk score but further validation required.
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Boyapati R, Majumdar A, and Robertson M
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- Female, Humans, Male, Endoscopy adverse effects, Peptic Ulcer diagnosis, Peptic Ulcer Hemorrhage diagnosis, Severity of Illness Index
- Abstract
A novel upper gastrointestinal bleeding risk stratification score (AIMS65) has recently been developed and validated. It has advantages over existing risk scores including being easy to remember and lack of subjectivity in calculation. We comment on a recent study that has cast doubt on the applicability of AIMS65 in the peptic ulcer disease population. Although promising, further studies are required to evaluate the validity of AIMS65 in various populations.
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- 2014
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