31 results on '"Rister J"'
Search Results
2. Six Sigma-Oriented Methodology for Multivariate Capability Analysis to Measure Service Quality in Virtual Education Environments
- Author
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Herrera, Roberto, primary and Pombo, Rister J. Barreto, additional
- Published
- 2021
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3. Six Sigma-Oriented Methodology for Multivariate Capability Analysis to Measure Service Quality in Virtual Education Environments
- Author
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Roberto Herrera and Rister J. Barreto Pombo
- Subjects
General Business, Management and Accounting - Published
- 2021
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4. Propuesta de carta de control multivariada utilizando la media winsorizada basada en la Carta |S|.
- Author
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Ariza Guerrero, Angelys P., Barreto Pombo, Rister J., and Herrera Acosta, Roberto J.
- Abstract
The global quality of a product is often subject to the simultaneous evaluation of several of its features; under these circumstances, it becomes necessary to implement a multivariate analysis. The variance-covariance matrix is one of the most important quality control statistics in multivariate settings and it can be monitored using different methods, such as the Shewhart, CUSUM and EWMA charts. In this article, a construction method for the multivariate control chart |S| is proposed using the Winsorized Mean as the mean vector estimator. It was demonstrated that this modification was more efficient when the sampled data hat outliers. This study shows a comparison between the traditional multivariate control chart and the proposed chart, which was found to have more sensitivity. [ABSTRACT FROM AUTHOR]
- Published
- 2019
5. Distinct Roles for Two Histamine Receptors (hclA and hclB) at the Drosophila Photoreceptor Synapse
- Author
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Pantazis, A., primary, Segaran, A., additional, Liu, C.-H., additional, Nikolaev, A., additional, Rister, J., additional, Thum, A. S., additional, Roeder, T., additional, Semenov, E., additional, Juusola, M., additional, and Hardie, R. C., additional
- Published
- 2008
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6. Propuesta de Carta de Control Multivariada utilizando la Media Winsorizada basada en la Carta |S| / Proposed Multivariate Control Chart using Winsorized Mean based on the |S| Chart
- Author
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Rister Junior Barreto Pombo, Angellys Paola Ariza Guerrero, and Roberto José Herrera Acosta
- Subjects
Variabilidad ,Sensibilidad ,Calidad ,Determinantes ,Extremos. ,Engineering (General). Civil engineering (General) ,TA1-2040 - Abstract
Resumen— El monitoreo global de la calidad de un producto está sujeto a la evaluación simultánea de varias de sus características; es necesario bajo estas condiciones la implementación de las cartas de control tipo multivariadas. La variabilidad, en este caso la matriz de varianza covarianza, es sin duda el más importante de los estadísticos desde la perspectiva multivariada, que puede ser monitoreada con distintas cartas. Entre éstas se encuentran: las cartas Shewhart, CUSUM y EWMA. En este artículo se desarrolla una metodología de implementación de la Media Winsorizada en la carta de control multivariada de varianza efectiva |S|, encontrando una gran utilidad en procesos con valores extremos. El estudio muestra además una comparación entre la carta de control tradicional multivariante y la carta propuesta, que muestra mayor sensibilidad. Abstract— The global quality monitoring of a product is often subject to the simultaneous evaluation of several of its features; under these circumstances it is necessary to implement multivariate control charts. Variability, in this particular case, the variance-covariance matrix is indisputably the most important of the statistics from the multivariate perspective and it can be monitored with different charts, among these: Shewhart, CUSUM and EWMA. This article develops the Winsorized Mean in the effective variance multivariate control |S|-chart implementation methodology and it was demonstrated that the modification was more efficient when the sample hat outliers. This study shows a comparison between the traditional multivariate control chart and a proposed chart which was found to have more sensitivity.
- Published
- 2018
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7. Eye proteome of Drosophila melanogaster.
- Author
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Kumar M, Has C, Lam-Kamath K, Ayciriex S, Dewett D, Bashir M, Poupault C, Schuhmann K, Thomas H, Knittelfelder O, Raghuraman BK, Ahrends R, Rister J, and Shevchenko A
- Subjects
- Animals, Male, Eye metabolism, Eye Proteins metabolism, Eye Proteins genetics, Proteomics methods, Drosophila melanogaster metabolism, Drosophila melanogaster genetics, Proteome metabolism, Proteome analysis, Drosophila Proteins metabolism, Drosophila Proteins genetics, Tandem Mass Spectrometry
- Abstract
Drosophila melanogaster is a popular model organism to elucidate the molecular mechanisms that underlie the structure and function of the eye as well as the causes of retinopathies, aging, light-induced damage, or dietary deficiencies. Large-scale screens have isolated genes whose mutation causes morphological and functional ocular defects, which led to the discovery of key components of the phototransduction cascade. However, the proteome of the Drosophila eye is poorly characterized. Here, we used GeLC-MS/MS to quantify 3516 proteins, including the absolute (molar) quantities of 43 proteins in the eye of adult male Drosophila reared on standard laboratory food. This work provides a generic and expandable resource for further genetic, pharmacological, and dietary studies., (© 2023 The Authors. PROTEOMICS published by Wiley‐VCH GmbH.)
- Published
- 2024
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8. Lipidome Unsaturation Affects the Morphology and Proteome of the Drosophila Eye.
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Kumar M, Has C, Lam-Kamath K, Ayciriex S, Dewett D, Bashir M, Poupault C, Schuhmann K, Thomas H, Knittelfelder O, Raghuraman BK, Ahrends R, Rister J, and Shevchenko A
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- Animals, Drosophila melanogaster genetics, Lipidomics, Fatty Acids, Glycerophospholipids, Proteome genetics, Drosophila
- Abstract
Organisms respond to dietary and environmental challenges by altering the molecular composition of their glycerolipids and glycerophospholipids (GPLs), which may favorably adjust the physicochemical properties of lipid membranes. However, how lipidome changes affect the membrane proteome and, eventually, the physiology of specific organs is an open question. We addressed this issue in Drosophila melanogaster , which is not able to synthesize sterols and polyunsaturated fatty acids but can acquire them from food. We developed a series of semisynthetic foods to manipulate the length and unsaturation of fatty acid moieties in GPLs and singled out proteins whose abundance is specifically affected by membrane lipid unsaturation in the Drosophila eye. Unexpectedly, we identified a group of proteins that have muscle-related functions and increased their abundances under unsaturated eye lipidome conditions. In contrast, the abundance of two stress response proteins, Turandot A and Smg5, is decreased by lipid unsaturation. Our findings could guide the genetic dissection of homeostatic mechanisms that maintain visual function when the eye is exposed to environmental and dietary challenges.
- Published
- 2024
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9. Lipidome unsaturation affects the morphology and proteome of the Drosophila eye.
- Author
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Kumar M, Has C, Lam-Kamath K, Ayciriex S, Dewett D, Bashir M, Poupault C, Schuhmann K, Knittelfelder O, Raghuraman BK, Ahrends R, Rister J, and Shevchenko A
- Abstract
While the proteome of an organism is largely determined by the genome, the lipidome is shaped by a poorly understood interplay of environmental factors and metabolic processes. To gain insights into the underlying mechanisms, we analyzed the impacts of dietary lipid manipulations on the ocular proteome of Drosophila melanogaster . We manipulated the lipidome with synthetic food media that differed in the supplementation of an equal amount of saturated or polyunsaturated triacylglycerols. This allowed us to generate flies whose eyes had a highly contrasting length and unsaturation of glycerophospholipids, the major lipid class of biological membranes, while the abundance of other membrane lipid classes remained unchanged. By bioinformatically comparing the resulting ocular proteomic trends and contrasting them with the impacts of vitamin A deficiency, we identified ocular proteins whose abundances are differentially affected by lipid saturation and unsaturation. For instance, we unexpectedly identified a group of proteins that have muscle-related functions and increase their abundances in the eye upon lipidome unsaturation but are unaffected by lipidome saturation. Moreover, we identified two differentially lipid-responsive proteins involved in stress responses, Turandot A and Smg5, whose abundances decrease with lipid unsaturation. Lastly, we discovered that the ocular lipid class composition is robust to dietary changes and propose that this may be a general homeostatic feature of the organization of eukaryotic tissues, while the length and unsaturation of fatty acid moieties is more variable to compensate environmental challenges. We anticipate that these insights into the molecular responses of the Drosophila eye proteome to specific lipid manipulations will guide the genetic dissection of the mechanisms that maintain visual function when the eye is exposed to dietary challenges.
- Published
- 2023
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10. Blimp-1/PRDM1 and Hr3/RORβ specify the blue-sensitive photoreceptor subtype in Drosophila by repressing the hippo pathway.
- Author
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Bunker J, Bashir M, Bailey S, Boodram P, Perry A, Delaney R, Tsachaki M, Sprecher SG, Nelson E, Call GB, and Rister J
- Abstract
During terminal differentiation of the mammalian retina, transcription factors control binary cell fate decisions that generate functionally distinct subtypes of photoreceptor neurons. For instance, Otx2 and RORβ activate the expression of the transcriptional repressor Blimp-1/PRDM1 that represses bipolar interneuron fate and promotes rod photoreceptor fate. Moreover, Otx2 and Crx promote expression of the nuclear receptor Nrl that promotes rod photoreceptor fate and represses cone photoreceptor fate. Mutations in these four transcription factors cause severe eye diseases such as retinitis pigmentosa. Here, we show that a post-mitotic binary fate decision in Drosophila color photoreceptor subtype specification requires ecdysone signaling and involves orthologs of these transcription factors: Drosophila Blimp-1/PRDM1 and Hr3/RORβ promote blue-sensitive (Rh5) photoreceptor fate and repress green-sensitive (Rh6) photoreceptor fate through the transcriptional repression of warts / LATS , the nexus of the phylogenetically conserved Hippo tumor suppressor pathway. Moreover, we identify a novel interaction between Blimp-1 and warts, whereby Blimp-1 represses a warts intronic enhancer in blue-sensitive photoreceptors and thereby gives rise to specific expression of warts in green-sensitive photoreceptors. Together, these results reveal that conserved transcriptional regulators play key roles in terminal cell fate decisions in both the Drosophila and the mammalian retina, and the mechanistic insights further deepen our understanding of how Hippo pathway signaling is repurposed to control photoreceptor fates for Drosophila color vision., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2023 Bunker, Bashir, Bailey, Boodram, Perry, Delaney, Tsachaki, Sprecher, Nelson, Call and Rister.)
- Published
- 2023
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11. Eye proteome of Drosophila melanogaster .
- Author
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Kumar M, Has C, Lam-Kamath K, Ayciriex S, Dewett D, Bashir M, Poupault C, Schuhmann K, Knittelfelder O, Raghuraman BK, Ahrends R, Rister J, and Shevchenko A
- Abstract
The Drosophila melanogaster eye is a popular model to elucidate the molecular mechanisms that underlie the structure and function of the eye as well as the causes of retinopathies. For instance, the Drosophila eye has been used to investigate the impacts of ageing and environmental stresses such as light-induced damage or dietary deficiencies. Moreover, large-scale screens have isolated genes whose mutation causes morphological and functional ocular defects, which includes key components of the phototransduction cascade. However, the proteome of the Drosophila eye is poorly characterized. Here, we used GeLC-MS/MS to quantify 3516 proteins he adult Drosophila melanogaster eye and provide a generic and expandable resource for further genetic, pharmacological, and dietary studies.
- Published
- 2023
- Full Text
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12. Vitamin A Deficiency Alters the Phototransduction Machinery and Distinct Non-Vision-Specific Pathways in the Drosophila Eye Proteome.
- Author
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Kumar M, Has C, Lam-Kamath K, Ayciriex S, Dewett D, Bashir M, Poupault C, Schuhmann K, Knittelfelder O, Raghuraman BK, Ahrends R, Rister J, and Shevchenko A
- Subjects
- Animals, Drosophila, Drosophila melanogaster, Light Signal Transduction physiology, Proteome, Vitamin A, Drosophila Proteins genetics, Vitamin A Deficiency
- Abstract
The requirement of vitamin A for the synthesis of the visual chromophore and the light-sensing pigments has been studied in vertebrate and invertebrate model organisms. To identify the molecular mechanisms that orchestrate the ocular response to vitamin A deprivation, we took advantage of the fact that Drosophila melanogaster predominantly requires vitamin A for vision, but not for development or survival. We analyzed the impacts of vitamin A deficiency on the morphology, the lipidome, and the proteome of the Drosophila eye. We found that chronic vitamin A deprivation damaged the light-sensing compartments and caused a dramatic loss of visual pigments, but also decreased the molar abundance of most phototransduction proteins that amplify and transduce the visual signal. Unexpectedly, vitamin A deficiency also decreased the abundances of specific subunits of mitochondrial TCA cycle and respiratory chain components but increased the levels of cuticle- and lens-related proteins. In contrast, we found no apparent effects of vitamin A deficiency on the ocular lipidome. In summary, chronic vitamin A deficiency decreases the levels of most components of the visual signaling pathway, but also affects molecular pathways that are not vision-specific and whose mechanistic connection to vitamin A remains to be elucidated.
- Published
- 2022
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13. The power of the (imperfect) palindrome: Sequence-specific roles of palindromic motifs in gene regulation.
- Author
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Datta RR and Rister J
- Subjects
- Animals, Base Sequence, Humans, Mammals, Transcription Factors genetics, Gene Expression Regulation, Repetitive Sequences, Nucleic Acid
- Abstract
In human languages, a palindrome reads the same forward as backward (e.g., 'madam'). In regulatory DNA, a palindrome is an inverted sequence repeat that allows a transcription factor to bind as a homodimer or as a heterodimer with another type of transcription factor. Regulatory palindromes are typically imperfect, that is, the repeated sequences differ in at least one base pair, but the functional significance of this asymmetry remains poorly understood. Here, we review the use of imperfect palindromes in Drosophila photoreceptor differentiation and mammalian steroid receptor signaling. Moreover, we discuss mechanistic explanations for the predominance of imperfect palindromes over perfect palindromes in these two gene regulatory contexts. Lastly, we propose to elucidate whether specific imperfectly palindromic variants have specific regulatory functions in steroid receptor signaling and whether such variants can help predict transcriptional outcomes as well as the response of individual patients to drug treatments., (© 2022 Wiley Periodicals LLC.)
- Published
- 2022
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14. Vitamin A deficiency affects gene expression in the Drosophila melanogaster head.
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Dewett D, Labaf M, Lam-Kamath K, Zarringhalam K, and Rister J
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- Animals, Drosophila melanogaster genetics, Gene Expression, Rhodopsin genetics, Vitamin A, Drosophila Proteins, Vitamin A Deficiency
- Abstract
Insufficient dietary intake of vitamin A causes various human diseases. For instance, chronic vitamin A deprivation causes blindness, slow growth, impaired immunity, and an increased risk of mortality in children. In contrast to these diverse effects of vitamin A deficiency (VAD) in mammals, chronic VAD in flies neither causes obvious developmental defects nor lethality. As in mammals, VAD in flies severely affects the visual system: it impairs the synthesis of the retinal chromophore, disrupts the formation of the visual pigments (Rhodopsins), and damages the photoreceptors. However, the molecular mechanisms that respond to VAD remain poorly understood. To identify genes and signaling pathways that are affected by VAD, we performed RNA-sequencing and differential gene expression analysis in Drosophila melanogaster. We found an upregulation of genes that are essential for the synthesis of the retinal chromophore, specific aminoacyl-tRNA synthetases, and major nutrient reservoir proteins. We also discovered that VAD affects several genes that are required for the termination of the light response: for instance, we found a downregulation of both arrestin genes that are essential for the inactivation of Rhodopsin. A comparison of the VAD-responsive genes with previously identified blue light stress-responsive genes revealed that the two types of environmental stress trigger largely nonoverlapping transcriptome responses. Yet, both stresses increase the expression of seven genes with poorly understood functions. Taken together, our transcriptome analysis offers insights into the molecular mechanisms that respond to environmental stresses., (© The Author(s) 2021. Published by Oxford University Press on behalf of Genetics Society of America.)
- Published
- 2021
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15. Mechanisms of vitamin A metabolism and deficiency in the mammalian and fly visual system.
- Author
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Dewett D, Lam-Kamath K, Poupault C, Khurana H, and Rister J
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- Animals, Drosophila melanogaster metabolism, Mammals metabolism, Photoreceptor Cells metabolism, Retina metabolism, Retinal Pigment Epithelium metabolism, Retinaldehyde metabolism, Tretinoin metabolism, Visual Perception physiology, Vitamin A physiology, Vitamin A Deficiency metabolism, Vision, Ocular physiology, Vitamin A metabolism, Vitamin A Deficiency physiopathology
- Abstract
Vitamin A deficiency can cause human pathologies that range from blindness to embryonic malformations. This diversity is due to the lack of two major vitamin A metabolites with very different functions: the chromophore 11-cis-retinal (vitamin A aldehyde) is a critical component of the visual pigment that mediates phototransduction, while the signaling molecule all-trans-retinoic acid regulates the development of various tissues and is required for the function of the immune system. Since animals cannot synthesize vitamin A de novo, they must obtain it either as preformed vitamin A from animal products or as carotenoid precursors from plant sources. Due to its essential role in the visual system, acute vitamin A deprivation impairs photoreceptor function and causes night blindness (poor vision under dim light conditions), while chronic deprivation results in retinal dystrophies and photoreceptor cell death. Chronic vitamin A deficiency is the leading cause of preventable childhood blindness according to the World Health Organization. Due to the requirement of vitamin A for retinoic acid signaling in development and in the immune system, vitamin A deficiency also causes increased mortality in children and pregnant women in developing countries. Drosophila melanogaster is an excellent model to study the effects of vitamin A deprivation on the eye because vitamin A is not essential for Drosophila development and chronic deficiency does not cause lethality. Moreover, genetic screens in Drosophila have identified evolutionarily conserved factors that mediate the production of vitamin A and its cellular uptake. Here, we review our current knowledge about the role of vitamin A in the visual system of mammals and Drosophila melanogaster. We compare the molecular mechanisms that mediate the uptake of dietary vitamin A precursors and the metabolism of vitamin A, as well as the consequences of vitamin A deficiency for the structure and function of the eye., (Copyright © 2021 Elsevier Inc. All rights reserved.)
- Published
- 2021
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16. A combinatorial cis-regulatory logic restricts color-sensing Rhodopsins to specific photoreceptor subsets in Drosophila.
- Author
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Poupault C, Choi D, Lam-Kamath K, Dewett D, Razzaq A, Bunker J, Perry A, Cho I, and Rister J
- Subjects
- Animals, Base Sequence, Drosophila Proteins metabolism, Drosophila melanogaster metabolism, Evolution, Molecular, Female, Gene Expression Regulation, Genes, Reporter, Green Fluorescent Proteins genetics, Green Fluorescent Proteins metabolism, Photoreceptor Cells, Invertebrate classification, Photoreceptor Cells, Invertebrate cytology, Protein Binding, Protein Isoforms genetics, Protein Isoforms metabolism, Rhodopsin metabolism, Transcription Factors metabolism, Color Vision genetics, Drosophila Proteins genetics, Drosophila melanogaster genetics, Photoreceptor Cells, Invertebrate metabolism, Promoter Regions, Genetic, Rhodopsin genetics, Transcription Factors genetics
- Abstract
Color vision in Drosophila melanogaster is based on the expression of five different color-sensing Rhodopsin proteins in distinct subtypes of photoreceptor neurons. Promoter regions of less than 300 base pairs are sufficient to reproduce the unique, photoreceptor subtype-specific rhodopsin expression patterns. The underlying cis-regulatory logic remains poorly understood, but it has been proposed that the rhodopsin promoters have a bipartite structure: the distal promoter region directs the highly restricted expression in a specific photoreceptor subtype, while the proximal core promoter region provides general activation in all photoreceptors. Here, we investigate whether the rhodopsin promoters exhibit a strict specialization of their distal (subtype specificity) and proximal (general activation) promoter regions, or if both promoter regions contribute to generating the photoreceptor subtype-specific expression pattern. To distinguish between these two models, we analyze the expression patterns of a set of hybrid promoters that combine the distal promoter region of one rhodopsin with the proximal core promoter region of another rhodopsin. We find that the function of the proximal core promoter regions extends beyond providing general activation: these regions play a previously underappreciated role in generating the non-overlapping expression patterns of the different rhodopsins. Therefore, cis-regulatory motifs in both the distal and the proximal core promoter regions recruit transcription factors that generate the unique rhodopsin patterns in a combinatorial manner. We compare this combinatorial regulatory logic to the regulatory logic of olfactory receptor genes and discuss potential implications for the evolution of rhodopsins., Competing Interests: The authors have declared that no competing interests exist.
- Published
- 2021
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17. Arthroscopy Up to Date: Anterior Cruciate Ligament Anatomy.
- Author
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Schillhammer CK, Reid JB 3rd, Rister J, Jani SS, Marvil SC, Chen AW, Anderson CG, D'Agostino S, and Lubowitz JH
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- Anterior Cruciate Ligament anatomy & histology, Anterior Cruciate Ligament Injuries, Femur anatomy & histology, Femur surgery, Humans, Knee Joint anatomy & histology, Knee Joint diagnostic imaging, Posterior Cruciate Ligament surgery, Reproducibility of Results, Risk Factors, Tibia anatomy & histology, Tibia surgery, Tomography, X-Ray Computed, Transplants, Anterior Cruciate Ligament surgery, Anterior Cruciate Ligament Reconstruction methods, Arthroscopy, Knee Injuries surgery, Knee Joint surgery, Tendons transplantation
- Abstract
Purpose: To categorize and summarize up-to-date anterior cruciate ligament (ACL) research published in Arthroscopy and The American Journal of Sports Medicine and systematically review each subcategory, beginning with ACL anatomy., Methods: After searching for "anterior cruciate ligament" OR "ACL" in Arthroscopy and The American Journal of Sports Medicine from January 2012 through December 2014, we excluded articles more pertinent to ACL augmentation; open growth plates; and meniscal, chondral, or multiligamentous pathology. Studies were subcategorized for data extraction., Results: We included 212 studies that were classified into 8 categories: anatomy; basic science and biomechanics; tunnel position; graft selection; graft fixation; injury risk and rehabilitation; practice patterns and outcomes; and complications. Anatomic risk factors for ACL injury and post-reconstruction graft failure include a narrow intercondylar notch, low native ACL volume, and increased posterior slope. Regarding anatomic footprints, the femoral attachment is 43% of the proximal-to-distal lateral femoral condylar length whereas the posterior border of the tendon is 2.5 mm from the articular margin. The tibial attachment of the ACL is two-fifths of the medial-to-lateral interspinous distance and 15 mm anterior to the posterior cruciate ligament. Anatomic research using radiology and computed tomography to evaluate ACL graft placement shows poor interobserver and intraobserver reliability., Conclusions: With a mind to improving outcomes, surgeons should be aware of anatomic risk factors (stenotic femoral notch, low ligament volume, and increased posterior slope) for ACL graft failure, have a precise understanding of arthroscopic landmarks identifying femoral and tibial footprint locations, and understand that imaging to evaluate graft placement is unreliable., Level of Evidence: Level III, systematic review of Level III evidence., (Copyright © 2016 Arthroscopy Association of North America. Published by Elsevier Inc. All rights reserved.)
- Published
- 2016
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18. Single-base pair differences in a shared motif determine differential Rhodopsin expression.
- Author
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Rister J, Razzaq A, Boodram P, Desai N, Tsanis C, Chen H, Jukam D, and Desplan C
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- Animals, Base Pairing, Drosophila melanogaster genetics, Drosophila melanogaster growth & development, Mutation, Transcription Factors metabolism, Drosophila Proteins genetics, Gene Expression Regulation, Developmental, Photoreceptor Cells, Invertebrate physiology, Promoter Regions, Genetic genetics, Rhodopsin genetics, Vision, Ocular genetics
- Abstract
The final identity and functional properties of a neuron are specified by terminal differentiation genes, which are controlled by specific motifs in compact regulatory regions. To determine how these sequences integrate inputs from transcription factors that specify cell types, we compared the regulatory mechanism of Drosophila Rhodopsin genes that are expressed in subsets of photoreceptors to that of phototransduction genes that are expressed broadly, in all photoreceptors. Both sets of genes share an 11-base pair (bp) activator motif. Broadly expressed genes contain a palindromic version that mediates expression in all photoreceptors. In contrast, each Rhodopsin exhibits characteristic single-bp substitutions that break the symmetry of the palindrome and generate activator or repressor motifs critical for restricting expression to photoreceptor subsets. Sensory neuron subtypes can therefore evolve through single-bp changes in short regulatory motifs, allowing the discrimination of a wide spectrum of stimuli., (Copyright © 2015, American Association for the Advancement of Science.)
- Published
- 2015
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19. Injury to neurovascular structures with insertion of traction pins around the knee.
- Author
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Lowe JA, Rister J, Eastman J, and Freind J
- Abstract
Objective: Identify risk to neurovascular structures around the knee with placement of skeletal traction pins., Methods: Kirchner wires were inserted into cadaveric limbs followed by layer dissecting of each leg. Correlations between weight, height, BMI, and distance were determined after calculating the average distance with deviation between each anatomic structure and the Kirschner wire., Conclusion: Insertion of traction pins around the knee did not result in injury to neurovascular structures. Both weight and BMI positively correlated with distance between implants and neurovascular structure. Data collected suggests similar trends for all other anatomic structures.
- Published
- 2014
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20. Opposite feedbacks in the Hippo pathway for growth control and neural fate.
- Author
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Jukam D, Xie B, Rister J, Terrell D, Charlton-Perkins M, Pistillo D, Gebelein B, Desplan C, and Cook T
- Subjects
- Animals, Drosophila Proteins genetics, Drosophila melanogaster cytology, Drosophila melanogaster genetics, Feedback, Physiological, Gene Regulatory Networks, Homeodomain Proteins metabolism, Intracellular Signaling Peptides and Proteins genetics, Mitosis, Photoreceptor Cells, Invertebrate cytology, Photoreceptor Cells, Invertebrate metabolism, Protein Kinases genetics, YAP-Signaling Proteins, Drosophila Proteins metabolism, Drosophila melanogaster growth & development, Gene Expression Regulation, Developmental, Intracellular Signaling Peptides and Proteins metabolism, Neurogenesis genetics, Nuclear Proteins metabolism, Photoreceptor Cells, Invertebrate physiology, Protein Serine-Threonine Kinases metabolism, Signal Transduction, Trans-Activators metabolism
- Abstract
Signaling pathways are reused for multiple purposes in plant and animal development. The Hippo pathway in mammals and Drosophila coordinates proliferation and apoptosis via the coactivator and oncoprotein YAP/Yorkie (Yki), which is homeostatically regulated through negative feedback. In the Drosophila eye, cross-repression between the Hippo pathway kinase LATS/Warts (Wts) and growth regulator Melted generates mutually exclusive photoreceptor subtypes. Here, we show that this all-or-nothing neuronal differentiation results from Hippo pathway positive feedback: Yki both represses its negative regulator, warts, and promotes its positive regulator, melted. This postmitotic Hippo network behavior relies on a tissue-restricted transcription factor network-including a conserved Otx/Orthodenticle-Nrl/Traffic Jam feedforward module-that allows Warts-Yki-Melted to operate as a bistable switch. Altering feedback architecture provides an efficient mechanism to co-opt conserved signaling networks for diverse purposes in development and evolution.
- Published
- 2013
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21. Regional modulation of a stochastically expressed factor determines photoreceptor subtypes in the Drosophila retina.
- Author
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Thanawala SU, Rister J, Goldberg GW, Zuskov A, Olesnicky EC, Flowers JM, Jukam D, Purugganan MD, Gavis ER, Desplan C, and Johnston RJ Jr
- Subjects
- Alleles, Animals, Aryl Hydrocarbon Receptor Nuclear Translocator genetics, Aryl Hydrocarbon Receptor Nuclear Translocator metabolism, Cell Nucleus genetics, Cell Nucleus metabolism, Drosophila genetics, Drosophila metabolism, Drosophila Proteins genetics, Embryo, Nonmammalian metabolism, Embryo, Nonmammalian physiology, Gene Expression Regulation, Developmental, Green Fluorescent Proteins metabolism, Homeodomain Proteins genetics, Homeodomain Proteins metabolism, Mutation, Phenotype, Photoreceptor Cells, Vertebrate cytology, Photoreceptor Cells, Vertebrate metabolism, Promoter Regions, Genetic, Protein Multimerization, Protein Structure, Tertiary, Receptors, Aryl Hydrocarbon genetics, Retina metabolism, Rhodopsin genetics, Rhodopsin metabolism, Species Specificity, Transcription, Genetic, Drosophila physiology, Drosophila Proteins metabolism, Photoreceptor Cells, Vertebrate physiology, Receptors, Aryl Hydrocarbon metabolism, Retina physiology
- Abstract
Stochastic mechanisms are sometimes utilized to diversify cell fates, especially in nervous systems. In the Drosophila retina, stochastic expression of the PAS-bHLH transcription factor Spineless (Ss) controls photoreceptor subtype choice. In one randomly distributed subset of R7 photoreceptors, Ss activates Rhodopsin4 (Rh4) and represses Rhodopsin3 (Rh3); counterparts lacking Ss express Rh3 and repress Rh4. In the dorsal third region of the retina, the Iroquois Complex transcription factors induce Rh3 in Rh4-expressing R7s. Here, we show that Ss levels are controlled in a binary on/off manner throughout the retina yet are attenuated in the dorsal third region to allow Rh3 coexpression with Rh4. Whereas the sensitivity of rh3 repression to differences in Ss levels generates stochastic and regionalized patterns, the robustness of rh4 activation ensures its stochastic expression throughout the retina. Our findings show how stochastic and regional inputs are integrated to control photoreceptor subtype specification in the Drosophila retina., (Copyright © 2013 Elsevier Inc. All rights reserved.)
- Published
- 2013
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22. Establishing and maintaining gene expression patterns: insights from sensory receptor patterning.
- Author
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Rister J, Desplan C, and Vasiliauskas D
- Subjects
- Animals, Cell Differentiation, Compound Eye, Arthropod cytology, Compound Eye, Arthropod metabolism, Drosophila genetics, Drosophila metabolism, Drosophila Proteins genetics, Drosophila Proteins metabolism, Mice, Olfactory Mucosa cytology, Olfactory Mucosa metabolism, Photoreceptor Cells, Vertebrate cytology, Photoreceptor Cells, Vertebrate metabolism, Retina metabolism, Rhodopsin genetics, Rhodopsin metabolism, Rod Opsins genetics, Sensory Receptor Cells metabolism, Transcription, Genetic, Drosophila cytology, Gene Expression Regulation, Retina cytology, Rod Opsins metabolism, Sensory Receptor Cells cytology
- Abstract
In visual and olfactory sensory systems with high discriminatory power, each sensory neuron typically expresses one, or very few, sensory receptor genes, excluding all others. Recent studies have provided insights into the mechanisms that generate and maintain sensory receptor expression patterns. Here, we review how this is achieved in the fly retina and compare it with the mechanisms controlling sensory receptor expression patterns in the mouse retina and in the mouse and fly olfactory systems.
- Published
- 2013
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23. Binary cell fate decisions and fate transformation in the Drosophila larval eye.
- Author
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Mishra AK, Tsachaki M, Rister J, Ng J, Celik A, and Sprecher SG
- Subjects
- Animals, Cell Differentiation genetics, Drosophila Proteins metabolism, Drosophila melanogaster genetics, Drosophila melanogaster growth & development, Drosophila melanogaster metabolism, Ecdysone biosynthesis, Eye metabolism, Gene Expression Regulation, Developmental, Larva growth & development, Larva metabolism, Nuclear Proteins metabolism, Photoreceptor Cells, Invertebrate cytology, Photoreceptor Cells, Invertebrate metabolism, Rhodopsin genetics, Rhodopsin metabolism, Sensory Receptor Cells cytology, Sensory Receptor Cells metabolism, Transcription Factors metabolism, Cell Lineage genetics, Drosophila Proteins genetics, Eye growth & development, Metamorphosis, Biological genetics, Nuclear Proteins genetics, Transcription Factors genetics
- Abstract
The functionality of sensory neurons is defined by the expression of specific sensory receptor genes. During the development of the Drosophila larval eye, photoreceptor neurons (PRs) make a binary choice to express either the blue-sensitive Rhodopsin 5 (Rh5) or the green-sensitive Rhodopsin 6 (Rh6). Later during metamorphosis, ecdysone signaling induces a cell fate and sensory receptor switch: Rh5-PRs are re-programmed to express Rh6 and become the eyelet, a small group of extraretinal PRs involved in circadian entrainment. However, the genetic and molecular mechanisms of how the binary cell fate decisions are made and switched remain poorly understood. We show that interplay of two transcription factors Senseless (Sens) and Hazy control cell fate decisions, terminal differentiation of the larval eye and its transformation into eyelet. During initial differentiation, a pulse of Sens expression in primary precursors regulates their differentiation into Rh5-PRs and repression of an alternative Rh6-cell fate. Later, during the transformation of the larval eye into the adult eyelet, Sens serves as an anti-apoptotic factor in Rh5-PRs, which helps in promoting survival of Rh5-PRs during metamorphosis and is subsequently required for Rh6 expression. Comparably, during PR differentiation Hazy functions in initiation and maintenance of rhodopsin expression. Hazy represses Sens specifically in the Rh6-PRs, allowing them to die during metamorphosis. Our findings show that the same transcription factors regulate diverse aspects of larval and adult PR development at different stages and in a context-dependent manner., Competing Interests: The authors have declared that no competing interests exist.
- Published
- 2013
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24. Dissection and immunohistochemistry of larval, pupal and adult Drosophila retinas.
- Author
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Hsiao HY, Johnston RJ Jr, Jukam D, Vasiliauskas D, Desplan C, and Rister J
- Subjects
- Animals, Dissection methods, Drosophila melanogaster growth & development, Immunohistochemistry methods, Larva, Pupa, Retina anatomy & histology, Drosophila melanogaster anatomy & histology, Drosophila melanogaster metabolism, Retina metabolism, Retina surgery
- Abstract
The compound eye of Drosophila melanogaster consists of about 750 ommatidia (unit eyes). Each ommatidium is composed of about 20 cells, including lens-secreting cone cells, pigment cells, a bristle cell and eight photoreceptors (PRs) R1-R8. The PRs have specialized microvillar structures, the rhabdomeres, which contain light-sensitive pigments, the Rhodopsins (Rhs). The rhabdomeres of six PRs (R1-R6) form a trapezoid and contain Rh1. The rhabdomeres of R7 and R8 are positioned in tandem in the center of the trapezoid and share the same path of light. R7 and R8 PRs stochastically express different combinations of Rhs in two main subtypes: In the 'p' subtype, Rh3 in pR7s is coupled with Rh5 in pR8s, whereas in the 'y' subtype, Rh4 in yR7s is associated with Rh6 in yR8s. Early specification of PRs and development of ommatidia begins in the larval eye-antennal imaginal disc, a monolayer of epithelial cells. A wave of differentiation sweeps across the disc and initiates the assembly of undifferentiated cells into ommatidia. The 'founder cell' R8 is specified first and recruits R1-6 and then R7. Subsequently, during pupal development, PR differentiation leads to extensive morphological changes, including rhabdomere formation, synaptogenesis and eventually rh expression. In this protocol, we describe methods for retinal dissections and immunohistochemistry at three defined periods of retina development, which can be applied to address a variety of questions concerning retinal formation and developmental pathways. Here, we use these methods to visualize the stepwise PR differentiation at the single-cell level in whole mount larval, midpupal and adult retinas (Figure 1).
- Published
- 2012
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25. The retinal mosaics of opsin expression in invertebrates and vertebrates.
- Author
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Rister J and Desplan C
- Subjects
- Animals, Evolution, Molecular, Humans, Invertebrates, Light Signal Transduction physiology, Opsins genetics, Photoreceptor Cells classification, Vertebrates, Opsins metabolism, Photoreceptor Cells metabolism, Retina cytology, Retina physiology
- Abstract
Color vision is found in many invertebrate and vertebrate species. It is the ability to discriminate objects based on the wavelength of emitted light independent of intensity. As it requires the comparison of at least two photoreceptor types with different spectral sensitivities, this process is often mediated by a mosaic made of several photoreceptor types. In this review, we summarize the current knowledge about the formation of retinal mosaics and the regulation of photopigment (opsin) expression in the fly, mouse, and human retina. Despite distinct evolutionary origins, as well as major differences in morphology and phototransduction machineries, there are significant similarities in the stepwise cell-fate decisions that lead from progenitor cells to terminally differentiated photoreceptors that express a particular opsin. Common themes include (i) the use of binary transcriptional switches that distinguish classes of photoreceptors, (ii) the use of gradients of signaling molecules for regional specializations, (iii) stochastic choices that pattern the retina, and (iv) the use of permissive factors with multiple roles in different photoreceptor types., (Copyright © 2011 Wiley Periodicals, Inc.)
- Published
- 2011
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26. Deciphering the genome's regulatory code: the many languages of DNA.
- Author
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Rister J and Desplan C
- Subjects
- Animals, Chromatin Immunoprecipitation, Computational Biology, Humans, Oligonucleotide Array Sequence Analysis, Transcription Factors metabolism, Genome genetics, Regulatory Sequences, Nucleic Acid genetics, Sequence Analysis, DNA methods
- Abstract
The generation of patterns and the diversity of cell types in a multicellular organism require differential gene regulation. At the heart of this process are enhancers or cis-regulatory modules (CRMs), genomic regions that are bound by transcription factors (TFs) that control spatio-temporal gene expression in developmental networks. To date, only a few CRMs have been studied in detail and the underlying cis-regulatory code is not well understood. Here, we review recent progress on the genome-wide identification of CRMs with chromatin immunoprecipitation of TF-DNA complexes followed by microarrays (ChIP-on-chip). We focus on two computational approaches that have succeeded in predicting the expression pattern driven by a CRM either based on TF binding site preferences and their expression levels, or quantitative analysis of CRM occupancy by key TFs. We also discuss the current limits of these methods and highlight some of the key problems that have to be solved to gain a more complete understanding of the structure and function of CRMs.
- Published
- 2010
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27. The neural substrate of spectral preference in Drosophila.
- Author
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Gao S, Takemura SY, Ting CY, Huang S, Lu Z, Luan H, Rister J, Thum AS, Yang M, Hong ST, Wang JW, Odenwald WF, White BH, Meinertzhagen IA, and Lee CH
- Subjects
- Amacrine Cells cytology, Amacrine Cells physiology, Amacrine Cells radiation effects, Animals, Color Vision radiation effects, Compound Eye, Arthropod cytology, Compound Eye, Arthropod radiation effects, Drosophila melanogaster cytology, Interneurons cytology, Interneurons radiation effects, Light Signal Transduction physiology, Light Signal Transduction radiation effects, Optic Lobe, Nonmammalian cytology, Optic Lobe, Nonmammalian physiology, Photic Stimulation, Photoreceptor Cells, Invertebrate cytology, Photoreceptor Cells, Invertebrate radiation effects, Synapses physiology, Synapses radiation effects, Synapses ultrastructure, Synaptic Transmission physiology, Synaptic Transmission radiation effects, Ultraviolet Rays, Visual Pathways cytology, Visual Pathways radiation effects, Color Vision physiology, Compound Eye, Arthropod physiology, Drosophila melanogaster physiology, Interneurons physiology, Photoreceptor Cells, Invertebrate physiology, Visual Pathways physiology
- Abstract
Drosophila vision is mediated by inputs from three types of photoreceptor neurons; R1-R6 mediate achromatic motion detection, while R7 and R8 constitute two chromatic channels. Neural circuits for processing chromatic information are not known. Here, we identified the first-order interneurons downstream of the chromatic channels. Serial EM revealed that small-field projection neurons Tm5 and Tm9 receive direct synaptic input from R7 and R8, respectively, and indirect input from R1-R6, qualifying them to function as color-opponent neurons. Wide-field Dm8 amacrine neurons receive input from 13-16 UV-sensing R7s and provide output to projection neurons. Using a combinatorial expression system to manipulate activity in different neuron subtypes, we determined that Dm8 neurons are necessary and sufficient for flies to exhibit phototaxis toward ultraviolet instead of green light. We propose that Dm8 sacrifices spatial resolution for sensitivity by relaying signals from multiple R7s to projection neurons, which then provide output to higher visual centers.
- Published
- 2008
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28. Dissection of the peripheral motion channel in the visual system of Drosophila melanogaster.
- Author
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Rister J, Pauls D, Schnell B, Ting CY, Lee CH, Sinakevitch I, Morante J, Strausfeld NJ, Ito K, and Heisenberg M
- Subjects
- Analysis of Variance, Animals, Animals, Genetically Modified, Drosophila Proteins, Drosophila melanogaster, Flight, Animal physiology, Interneurons classification, Interneurons physiology, Motion, Photic Stimulation methods, Signal Transduction physiology, Behavior, Animal physiology, Color Perception physiology, Motion Perception physiology, Nervous System cytology, Visual Pathways physiology
- Abstract
In the eye, visual information is segregated into modalities such as color and motion, these being transferred to the central brain through separate channels. Here, we genetically dissect the achromatic motion channel in the fly Drosophila melanogaster at the level of the first relay station in the brain, the lamina, where it is split into four parallel pathways (L1-L3, amc/T1). The functional relevance of this divergence is little understood. We now show that the two most prominent pathways, L1 and L2, together are necessary and largely sufficient for motion-dependent behavior. At high pattern contrast, the two pathways are redundant. At intermediate contrast, they mediate motion stimuli of opposite polarity, L2 front-to-back, L1 back-to-front motion. At low contrast, L1 and L2 depend upon each other for motion processing. Of the two minor pathways, amc/T1 specifically enhances the L1 pathway at intermediate contrast. L3 appears not to contribute to motion but to orientation behavior.
- Published
- 2007
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29. Distinct functions of neuronal synaptobrevin in developing and mature fly photoreceptors.
- Author
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Rister J and Heisenberg M
- Subjects
- Animals, Central Nervous System cytology, Central Nervous System metabolism, Drosophila melanogaster cytology, Drosophila melanogaster metabolism, Female, Gene Expression Regulation, Developmental genetics, Interneurons physiology, Metalloendopeptidases genetics, Metalloendopeptidases metabolism, Neurons cytology, Photoreceptor Cells, Invertebrate cytology, Presynaptic Terminals metabolism, Presynaptic Terminals ultrastructure, R-SNARE Proteins genetics, Synaptic Transmission physiology, Tetanus Toxin genetics, Tetanus Toxin metabolism, Cell Differentiation physiology, Central Nervous System growth & development, Drosophila melanogaster growth & development, Neurons metabolism, Photoreceptor Cells, Invertebrate metabolism, R-SNARE Proteins metabolism
- Abstract
Neuronal synaptobrevin (n-Syb, alias VAMP2), a synaptic vesicle membrane protein with a central role in neurotransmission, is specifically cleaved by the light chain of tetanus neurotoxin (TNT) that is known to reliably block neuroexocytosis. Here, we study fly photoreceptors transmitting continuous, graded signals to first order interneurons in the lamina, and report consequences of targeted expression of TNT in these cells using the UAS/GAL4 driver/effector system. Expressing the toxin throughout photoreceptor development causes developmental, electrophysiological, and behavioral defects. These can be differentiated by confining toxin expression to shorter developmental periods. Applying a method for controlled temporal and spatial TNT expression, we found that in the early pupa it impaired the development of the retina; in the midpupa, during synapse formation TNT caused a severe hypoplasia of the lamina that persisted into adulthood and left the photoreceptor-interneuron synapses of the lamina without function. Finally, during adulthood TNT neither blocks synaptic transmission in photoreceptors nor depletes the cells of n-Syb. Our study suggests a novel, cell type-specific function of n-Syb in synaptogenesis and it distinguishes between two synapse types: TNT resistant and TNT sensitive ones. These results need to be taken into account if TNT is used for neural circuit analysis., ((c) 2006 Wiley Periodicals, Inc.)
- Published
- 2006
- Full Text
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30. Differential potencies of effector genes in adult Drosophila.
- Author
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Thum AS, Knapek S, Rister J, Dierichs-Schmitt E, Heisenberg M, and Tanimoto H
- Subjects
- Animals, Diphtheria Toxin genetics, Diphtheria Toxin metabolism, Drosophila Proteins genetics, Drosophila Proteins metabolism, Drosophila melanogaster anatomy & histology, Drosophila melanogaster metabolism, Dynamins genetics, Dynamins metabolism, Female, Male, Mushroom Bodies cytology, Mushroom Bodies metabolism, Paralysis, Peptide Fragments genetics, Peptide Fragments metabolism, Potassium Channels, Inwardly Rectifying genetics, Potassium Channels, Inwardly Rectifying metabolism, Synapses metabolism, Temperature, Tetanus Toxin genetics, Tetanus Toxin metabolism, Behavior, Animal physiology, Drosophila melanogaster genetics, Gene Expression Regulation
- Abstract
The GAL4/UAS gene expression system in Drosophila has been crucial in revealing the behavioral significance of neural circuits. Transgene products that block neurotransmitter release and induce cell death have been proved to inhibit neural function powerfully. Here we compare the action of the five effector genes shibire(ts1), Tetanus toxin light chain (TNT), reaper, Diphtheria toxin A-chain (DTA), and inwardly rectifying potassium channel (Kir2.1) and show differences in their efficiency depending on the target cells and the timing of induction. Specifically, effectors blocking neuronal transmission or excitability led to adult-induced paralysis more efficiently than those causing cell ablation. We contrasted these differential potencies in adult to their actions during development. Furthermore, we induced TNT expression in the adult mushroom bodies. In contrast to the successful impairment in short-term olfactory memory by shibire(ts1), adult TNT expression in the same set of cells did not lead to any obvious impairment. Altogether, the efficiency of effector genes depends on properties of the targeted neurons. Thus, we conclude that the selection of the appropriate effector gene is critical for evaluating the function of neural circuits., (2006 Wiley-Liss, Inc.)
- Published
- 2006
- Full Text
- View/download PDF
31. Flies lacking all synapsins are unexpectedly healthy but are impaired in complex behaviour.
- Author
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Godenschwege TA, Reisch D, Diegelmann S, Eberle K, Funk N, Heisenberg M, Hoppe V, Hoppe J, Klagges BR, Martin JR, Nikitina EA, Putz G, Reifegerste R, Reisch N, Rister J, Schaupp M, Scholz H, Schwärzel M, Werner U, Zars TD, Buchner S, and Buchner E
- Subjects
- Action Potentials drug effects, Action Potentials genetics, Action Potentials physiology, Animals, Animals, Genetically Modified, Behavior, Animal drug effects, Blotting, Western methods, Central Nervous System Depressants pharmacology, Cloning, Molecular methods, Conditioning, Operant physiology, DNA Mutational Analysis, Drosophila genetics, Electric Stimulation methods, Ethanol pharmacology, Excitatory Postsynaptic Potentials genetics, Immunohistochemistry methods, Immunosorbent Techniques, Membrane Potentials genetics, Membrane Potentials physiology, Microscopy, Electron, Motor Activity drug effects, Motor Activity physiology, Mutagenesis physiology, Neuromuscular Junction genetics, Neuromuscular Junction metabolism, Neuromuscular Junction physiology, Psychomotor Performance physiology, Sexual Behavior drug effects, Sexual Behavior physiology, Synapses metabolism, Synapses ultrastructure, Synapsins genetics, Synapsins physiology, Synaptic Vesicles genetics, Synaptic Vesicles metabolism, Synaptic Vesicles ultrastructure, Time Factors, Tissue Distribution, Visual Perception genetics, Visual Perception physiology, Walking physiology, Wings, Animal physiology, Behavior, Animal physiology, Drosophila physiology, Synapsins deficiency
- Abstract
Vertebrate synapsins are abundant synaptic vesicle phosphoproteins that have been proposed to fine-regulate neurotransmitter release by phosphorylation-dependent control of synaptic vesicle motility. However, the consequences of a total lack of all synapsin isoforms due to a knock-out of all three mouse synapsin genes have not yet been investigated. In Drosophila a single synapsin gene encodes several isoforms and is expressed in most synaptic terminals. Thus the targeted deletion of the synapsin gene of Drosophila eliminates the possibility of functional knock-out complementation by other isoforms. Unexpectedly, synapsin null mutant flies show no obvious defects in brain morphology, and no striking qualitative changes in behaviour are observed. Ultrastructural analysis of an identified 'model' synapse of the larval nerve muscle preparation revealed no difference between wild-type and mutant, and spontaneous or evoked excitatory junction potentials at this synapse were normal up to a stimulus frequency of 5 Hz. However, when several behavioural responses were analysed quantitatively, specific differences between mutant and wild-type flies are noted. Adult locomotor activity, optomotor responses at high pattern velocities, wing beat frequency, and visual pattern preference are modified. Synapsin mutant flies show faster habituation of an olfactory jump response, enhanced ethanol tolerance, and significant defects in learning and memory as measured using three different paradigms. Larval behavioural defects are described in a separate paper. We conclude that Drosophila synapsins play a significant role in nervous system function, which is subtle at the cellular level but manifests itself in complex behaviour.
- Published
- 2004
- Full Text
- View/download PDF
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