112 results on '"Rita Selvatici"'
Search Results
2. mRNA in situ hybridization exhibits unbalanced nuclear/cytoplasmic dystrophin transcript repartition in Duchenne myogenic cells and skeletal muscle biopsies
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Maria Sofia Falzarano, Martina Mietto, Fernanda Fortunato, Marianna Farnè, Fernanda Martini, Pierpaolo Ala, Rita Selvatici, Francesco Muntoni, and Alessandra Ferlini
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Medicine ,Science - Abstract
Abstract To gain insight on dystrophin (DMD) gene transcription dynamics and spatial localization, we assayed the DMD mRNA amount and defined its compartmentalization in myoblasts, myotubes, and skeletal muscle biopsies of Duchenne muscular dystrophy (DMD) patients. Using droplet digital PCR, Real-time PCR, and RNAscope in situ hybridization, we showed that the DMD transcript amount is extremely reduced in both DMD patients’ cells and muscle biopsies and that mutation-related differences occur. We also found that, compared to controls, DMD transcript is dramatically reduced in the cytoplasm, as up to 90% of it is localized in nuclei, preferentially at the perinuclear region. Using RNA/protein colocalization experiments, we showed that about 40% of nuclear DMD mRNA is localized in the nucleoli in both control and DMD myogenic cells. Our results clearly show that mutant DMD mRNA quantity is strongly reduced in the patients’ myogenic cells and muscle biopsies. Furthermore, mutant DMD mRNA compartmentalization is spatially unbalanced due to a shift in its localization towards the nuclei. This abnormal transcript repartition contributes to the poor abundance and availability of the dystrophin messenger in cytoplasm. This novel finding also has important repercussions for RNA-targeted therapies.
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- 2023
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3. DMD deletions underlining mild dystrophinopathies: literature review highlights phenotype-related mutation clusters and provides insights about genetic mechanisms and prognosis
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Fernanda Fortunato, Laura Tonelli, Marianna Farnè, Rita Selvatici, and Alessandra Ferlini
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dystrophinopathy ,DMD ,BMD ,DMD gene ,asymptomatic ,hyperCKemia ,Neurology. Diseases of the nervous system ,RC346-429 - Abstract
DMD gene pathogenic variations cause a spectrum of phenotypes, ranging from severe Duchenne muscular dystrophy, the Becker milder cases, the intermediate or very mild muscle phenotypes invariably characterized by high CK, and the ultrarare fully-asymptomatic cases. Besides these phenotypes, X-linked dilated cardiomyopathy is also caused by DMD mutations. Males carrying DMD deletions with absent or very mild phenotypes have been sparsely described. We performed a horizon scan on public datasets to enroll males with the above phenotypes and carrying DMD deletions to delineate myopathic genotype-phenotype relationships. We inventoried 81 males, who were divided into the following clinical categorization: fully-asymptomatic males aged >43 years (A, N = 22); isolated hyperCKemia (CK, N = 35); and mild weakness (any age) with or without high CK (WCK, N = 24). In all cases, deleted intervals were exons 2 to 55, and no downstream exons were ever involved, apart from an exon 78 deletion in a WCK patient. All deletions were in-frame apart from the known exception to the rule of exon 2 and exon 78. We correlated the mild phenotypes (A and CK) to deleted exons, intronic breakpoints, exon-exon junctions, 3′ isoforms rule, and protein epitopes, and we found that some genetic profiles are exclusively/mainly occurring in A/CK phenotypes, suggesting they are compatible with a quasi-normal muscular performance. We discussed diverse pathogenic mechanisms that may contribute to mild dystrophinopathic phenotypes, and we tried to address some “critical” genetic configurations or exon content needed to preserve a semi-functional DMD gene.
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- 2024
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4. Clinical, genetic, epidemiologic, evolutionary, and functional delineation of TSPEAR-related autosomal recessive ectodermal dysplasia 14
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Adam Jackson, Sheng-Jia Lin, Elizabeth A. Jones, Kate E. Chandler, David Orr, Celia Moss, Zahra Haider, Gavin Ryan, Simon Holden, Mike Harrison, Nigel Burrows, Wendy D. Jones, Mary Loveless, Cassidy Petree, Helen Stewart, Karen Low, Deirdre Donnelly, Simon Lovell, Konstantina Drosou, Gaurav K. Varshney, Siddharth Banka, J.C. Ambrose, P. Arumugam, R. Bevers, M. Bleda, F. Boardman-Pretty, C.R. Boustred, H. Brittain, M.A. Brown, M.J. Caulfield, G.C. Chan, A. Giess, J.N. Griffin, A. Hamblin, S. Henderson, T.J.P. Hubbard, R. Jackson, L.J. Jones, D. Kasperaviciute, M. Kayikci, A. Kousathanas, L. Lahnstein, A. Lakey, S.E.A. Leigh, I.U.S. Leong, F.J. Lopez, F. Maleady-Crowe, M. McEntagart, F. Minneci, J. Mitchell, L. Moutsianas, M. Mueller, N. Murugaesu, A.C. Need, P. O‘Donovan, C.A. Odhams, C. Patch, D. Perez-Gil, M.B. Pereira, J. Pullinger, T. Rahim, A. Rendon, T. Rogers, K. Savage, K. Sawant, R.H. Scott, A. Siddiq, A. Sieghart, S.C. Smith, A. Sosinsky, A. Stuckey, M. Tanguy, A.L. Taylor Tavares, E.R.A. Thomas, S.R. Thompson, A. Tucci, M.J. Welland, E. Williams, K. Witkowska, S.M. Wood, M. Zarowiecki, Olaf Riess, Tobias B. Haack, Holm Graessner, Birte Zurek, Kornelia Ellwanger, Stephan Ossowski, German Demidov, Marc Sturm, Julia M. Schulze-Hentrich, Rebecca Schüle, Christoph Kessler, Melanie Wayand, Matthis Synofzik, Carlo Wilke, Andreas Traschütz, Ludger Schöls, Holger Hengel, Peter Heutink, Han Brunner, Hans Scheffer, Nicoline Hoogerbrugge, Alexander Hoischen, Peter A.C. ’t Hoen, Lisenka E.L.M. Vissers, Christian Gilissen, Wouter Steyaert, Karolis Sablauskas, Richarda M. de Voer, Erik-Jan Kamsteeg, Bart van de Warrenburg, Nienke van Os, Iris te Paske, Erik Janssen, Elke de Boer, Marloes Steehouwer, Burcu Yaldiz, Tjitske Kleefstra, Anthony J. Brookes, Colin Veal, Spencer Gibson, Marc Wadsley, Mehdi Mehtarizadeh, Umar Riaz, Greg Warren, Farid Yavari Dizjikan, Thomas Shorter, Ana Töpf, Volker Straub, Chiara Marini Bettolo, Sabine Specht, Jill Clayton-Smith, Elizabeth Alexander, Laurence Faivre, Christel Thauvin, Antonio Vitobello, Anne-Sophie Denommé-Pichon, Yannis Duffourd, Emilie Tisserant, Ange-Line Bruel, Christine Peyron, Aurore Pélissier, Sergi Beltran, Ivo Glynne Gut, Steven Laurie, Davide Piscia, Leslie Matalonga, Anastasios Papakonstantinou, Gemma Bullich, Alberto Corvo, Carles Garcia, Marcos Fernandez-Callejo, Carles Hernández, Daniel Picó, Ida Paramonov, Hanns Lochmüller, Gulcin Gumus, Virginie Bros-Facer, Ana Rath, Marc Hanauer, Annie Olry, David Lagorce, Svitlana Havrylenko, Katia Izem, Fanny Rigour, Giovanni Stevanin, Alexandra Durr, Claire-Sophie Davoine, Léna Guillot-Noel, Anna Heinzmann, Giulia Coarelli, Gisèle Bonne, Teresinha Evangelista, Valérie Allamand, Isabelle Nelson, Rabah Ben Yaou, Corinne Metay, Bruno Eymard, Enzo Cohen, Antonio Atalaia, Tanya Stojkovic, Milan Macek, Jr., Marek Turnovec, Dana Thomasová, Radka Pourová Kremliková, Vera Franková, Markéta Havlovicová, Vlastimil Kremlik, Helen Parkinson, Thomas Keane, Dylan Spalding, Alexander Senf, Peter Robinson, Daniel Danis, Glenn Robert, Alessia Costa, Christine Patch, Mike Hanna, Henry Houlden, Mary Reilly, Jana Vandrovcova, Francesco Muntoni, Irina Zaharieva, Anna Sarkozy, Vincent Timmerman, Jonathan Baets, Liedewei Van de Vondel, Danique Beijer, Peter de Jonghe, Vincenzo Nigro, Sandro Banfi, Annalaura Torella, Francesco Musacchia, Giulio Piluso, Alessandra Ferlini, Rita Selvatici, Rachele Rossi, Marcella Neri, Stefan Aretz, Isabel Spier, Anna Katharina Sommer, Sophia Peters, Carla Oliveira, Jose Garcia Pelaez, Ana Rita Matos, Celina São José, Marta Ferreira, Irene Gullo, Susana Fernandes, Luzia Garrido, Pedro Ferreira, Fátima Carneiro, Morris A. Swertz, Lennart Johansson, Joeri K. van der Velde, Gerben van der Vries, Pieter B. Neerincx, Dieuwke Roelofs-Prins, Sebastian Köhler, Alison Metcalfe, Alain Verloes, Séverine Drunat, Caroline Rooryck, Aurelien Trimouille, Raffaele Castello, Manuela Morleo, Michele Pinelli, Alessandra Varavallo, Manuel Posada De la Paz, Eva Bermejo Sánchez, Estrella López Martín, Beatriz Martínez Delgado, F. Javier Alonso García de la Rosa, Andrea Ciolfi, Bruno Dallapiccola, Simone Pizzi, Francesca Clementina Radio, Marco Tartaglia, Alessandra Renieri, Elisa Benetti, Peter Balicza, Maria Judit Molnar, Ales Maver, Borut Peterlin, Alexander Münchau, Katja Lohmann, Rebecca Herzog, Martje Pauly, Alfons Macaya, Anna Marcé-Grau, Andres Nascimiento Osorio, Daniel Natera de Benito, Rachel Thompson, Kiran Polavarapu, David Beeson, Judith Cossins, Pedro M. Rodriguez Cruz, Peter Hackman, Mridul Johari, Marco Savarese, Bjarne Udd, Rita Horvath, Gabriel Capella, Laura Valle, Elke Holinski-Feder, Andreas Laner, Verena Steinke-Lange, Evelin Schröck, and Andreas Rump
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TSPEAR ,Ectodermal dysplasia ,Enamel knot ,WNT10A ,Hypodontia ,Conical teeth ,Genetics ,QH426-470 - Abstract
Summary: TSPEAR variants cause autosomal recessive ectodermal dysplasia (ARED) 14. The function of TSPEAR is unknown. The clinical features, the mutation spectrum, and the underlying mechanisms of ARED14 are poorly understood. Combining data from new and previously published individuals established that ARED14 is primarily characterized by dental anomalies such as conical tooth cusps and hypodontia, like those seen in individuals with WNT10A-related odontoonychodermal dysplasia. AlphaFold-predicted structure-based analysis showed that most of the pathogenic TSPEAR missense variants likely destabilize the β-propeller of the protein. Analysis of 100000 Genomes Project (100KGP) data revealed multiple founder TSPEAR variants across different populations. Mutational and recombination clock analyses demonstrated that non-Finnish European founder variants likely originated around the end of the last ice age, a period of major climatic transition. Analysis of gnomAD data showed that the non-Finnish European population TSPEAR gene-carrier rate is ∼1/140, making it one of the commonest AREDs. Phylogenetic and AlphaFold structural analyses showed that TSPEAR is an ortholog of drosophila Closca, an extracellular matrix-dependent signaling regulator. We, therefore, hypothesized that TSPEAR could have a role in enamel knot, a structure that coordinates patterning of developing tooth cusps. Analysis of mouse single-cell RNA sequencing (scRNA-seq) data revealed highly restricted expression of Tspear in clusters representing enamel knots. A tspeara−/−;tspearb−/− double-knockout zebrafish model recapitulated the clinical features of ARED14 and fin regeneration abnormalities of wnt10a knockout fish, thus suggesting interaction between tspear and wnt10a. In summary, we provide insights into the role of TSPEAR in ectodermal development and the evolutionary history, epidemiology, mechanisms, and consequences of its loss of function variants.
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- 2023
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5. Genetic newborn screening and digital technologies: A project protocol based on a dual approach to shorten the rare diseases diagnostic path in Europe
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Nicolas Garnier, Joanne Berghout, Aldona Zygmunt, Deependra Singh, Kui A. Huang, Waltraud Kantz, Carl Rudolf Blankart, Sandra Gillner, Jiawei Zhao, Richard Roettger, Christina Saier, Jan Kirschner, Joern Schenk, Leon Atkins, Nuala Ryan, Kaja Zarakowska, Jana Zschüntzsch, Michela Zuccolo, Matthias Müllenborn, Yuen-Sum Man, Liz Goodman, Marie Trad, Anne Sophie Chalandon, Stefaan Sansen, Maria Martinez-Fresno, Shirlene Badger, Rudolf Walther van Olden, Robert Rothmann, Patrick Lehner, Christof Tschohl, Ludovic Baillon, Gulcin Gumus, Edith Gross, Rumen Stefanov, Georgi Iskrov, Ralitsa Raycheva, Kostadin Kostadinov, Elena Mitova, Moshe Einhorn, Yaron Einhorn, Josef Schepers, Miriam Hübner, Frauke Alves, Rowan Iskandar, Rudolf Mayer, Alessandra Renieri, Aneta Piperkova, Ivo Gut, Sergi Beltran, Mads Emil Matthiesen, Marion Poetz, Mats Hansson, Regina Trollmann, Emanuele Agolini, Silvia Ottombrino, Antonio Novelli, Enrico Bertini, Rita Selvatici, Marianna Farnè, Fernanda Fortunato, and Alessandra Ferlini
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Medicine ,Science - Published
- 2023
6. Mutations in MYBPC3 and MYH7 in Association with Brugada Type 1 ECG Pattern: Overlap between Brugada Syndrome and Hypertrophic Cardiomyopathy?
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Marianna Farnè, Cristina Balla, Alice Margutti, Rita Selvatici, Martina De Raffele, Assunta Di Domenico, Paola Imbrici, Elia De Maria, Mauro Biffi, Matteo Bertini, Claudio Rapezzi, Alessandra Ferlini, and Francesca Gualandi
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Brugada syndrome ,overlapping phenotypes ,sarcomeric genes ,MYBPC3 ,MYH7 ,hypertrophic cardiomyopathy ,Diseases of the circulatory (Cardiovascular) system ,RC666-701 - Abstract
Brugada syndrome (BrS) is an inherited disorder with high allelic and genetic heterogeneity clinically characterized by typical coved-type ST segment elevation at the electrocardiogram (ECG), which may occur either spontaneously or after provocative drug testing. BrS is classically described as an arrhythmic condition occurring in a structurally normal heart and is associated with the risk of ventricular fibrillation and sudden cardiac death (SCD). We studied five patients with spontaneous or drug-induced type 1 ECG pattern, variably associated with symptoms and a positive family history through a Next Generation Sequencing panels approach, which includes genes of both channelopathies and cardiomyopathies. We identified variants in MYBPC3 and in MYH7, hypertrophic cardiomyopathy (HCM) genes (MYBPC3: p.Lys1065Glnfs*12 and c.1458-1G > A, MYH7: p.Arg783His, p.Val1213Met, p.Lys744Thr). Our data propose that Brugada type 1 ECG may be an early electrocardiographic marker of a concealed structural heart disease, possibly enlarging the genotypic overlap between Brugada syndrome and cardiomyopathies.
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- 2021
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7. Brugada Syndrome: More than a Monogenic Channelopathy
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Antonella Liantonio, Matteo Bertini, Antonietta Mele, Cristina Balla, Giorgia Dinoi, Rita Selvatici, Marco Mele, Annamaria De Luca, Francesca Gualandi, and Paola Imbrici
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Brugada syndrome ,SCN5A ,Nav1.5 ,cardiac channelopathy ,arrhythmia ,Biology (General) ,QH301-705.5 - Abstract
Brugada syndrome (BrS) is an inherited cardiac channelopathy first diagnosed in 1992 but still considered a challenging disease in terms of diagnosis, arrhythmia risk prediction, pathophysiology and management. Despite about 20% of individuals carrying pathogenic variants in the SCN5A gene, the identification of a polygenic origin for BrS and the potential role of common genetic variants provide the basis for applying polygenic risk scores for individual risk prediction. The pathophysiological mechanisms are still unclear, and the initial thinking of this syndrome as a primary electrical disease is evolving towards a partly structural disease. This review focuses on the main scientific advancements in the identification of biomarkers for diagnosis, risk stratification, pathophysiology and therapy of BrS. A comprehensive model that integrates clinical and genetic factors, comorbidities, age and gender, and perhaps environmental influences may provide the opportunity to enhance patients’ quality of life and improve the therapeutic approach.
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- 2023
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8. RNA-seq in DMD urinary stem cells recognized muscle-related transcription signatures and addressed the identification of atypical mutations by whole-genome sequencing
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Maria S. Falzarano, Andrea Grilli, Silvia Zia, Mingyan Fang, Rachele Rossi, Francesca Gualandi, Paola Rimessi, Reem El Dani, Marina Fabris, Zhiyuan Lu, Wenyan Li, Tiziana Mongini, Federica Ricci, Elena Pegoraro, Luca Bello, Andrea Barp, Valeria A. Sansone, Madhuri Hegde, Barbara Roda, Pierluigi Reschiglian, Silvio Bicciato, Rita Selvatici, and Alessandra Ferlini
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Genetics ,QH426-470 - Abstract
Summary: Urinary stem cells (USCs) are a non-invasive, simple, and affordable cell source to study human diseases. Here we show that USCs are a versatile tool for studying Duchenne muscular dystrophy (DMD), since they are able to address RNA signatures and atypical mutation identification. Gene expression profiling of DMD individuals’ USCs revealed a profound deregulation of inflammation, muscle development, and metabolic pathways that mirrors the known transcriptional landscape of DMD muscle and worsens following USCs’ myogenic transformation. This pathogenic transcription signature was reverted by an exon-skipping corrective approach, suggesting the utility of USCs in monitoring DMD antisense therapy. The full DMD transcript profile performed in USCs from three undiagnosed DMD individuals addressed three splicing abnormalities, which were decrypted and confirmed as pathogenic variations by whole-genome sequencing (WGS). This combined genomic approach allowed the identification of three atypical and complex DMD mutations due to a deep intronic variation and two large inversions, respectively. All three mutations affect DMD gene splicing and cause a lack of dystrophin protein production, and one of these also generates unique fusion genes and transcripts. Further characterization of USCs using a novel cell-sorting technology (Celector) highlighted cell-type variability and the representation of cell-specific DMD isoforms. Our comprehensive approach to USCs unraveled RNA, DNA, and cell-specific features and demonstrated that USCs are a robust tool for studying and diagnosing DMD.
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- 2022
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9. Urine-Derived Stem Cells Express 571 Neuromuscular Disorders Causing Genes, Making Them a Potential in vitro Model for Rare Genetic Diseases
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Maria Sofia Falzarano, Rachele Rossi, Andrea Grilli, Mingyan Fang, Hana Osman, Patrizia Sabatelli, Manuela Antoniel, Zhiyuan Lu, Wenyan Li, Rita Selvatici, Cristina Al-Khalili, Francesca Gualandi, Silvio Bicciato, Silvia Torelli, and Alessandra Ferlini
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neuromuscular disorders ,neurodegenerative disorders ,urine derived stem cells ,RNA-seq ,western blot (WB) ,immunofluorescence ,Physiology ,QP1-981 - Abstract
Background: Neuromuscular disorders (NMDs) are a heterogeneous group of genetic diseases, caused by mutations in genes involved in spinal cord, peripheral nerve, neuromuscular junction, and muscle functions. To advance the knowledge of the pathological mechanisms underlying NMDs and to eventually identify new potential drugs paving the way for personalized medicine, limitations regarding the availability of neuromuscular disease-related biological samples, rarely accessible from patients, are a major challenge.Aim: We characterized urinary stem cells (USCs) by in-depth transcriptome and protein profiling to evaluate whether this easily accessible source of patient-derived cells is suitable to study neuromuscular genetic diseases, focusing especially on those currently involved in clinical trials.Methods: The global transcriptomics of either native or MyoD transformed USCs obtained from control individuals was performed by RNA-seq. The expression of 610 genes belonging to 16 groups of disorders (http://www.musclegenetable.fr/) whose mutations cause neuromuscular diseases, was investigated on the RNA-seq output. In addition, protein expression of 11 genes related to NMDs including COL6A, EMD, LMNA, SMN, UBA1, DYNC1H1, SOD1, C9orf72, DYSF, DAG1, and HTT was analyzed in native USCs by immunofluorescence and/or Western blot (WB).Results: RNA-seq profile of control USCs shows that 571 out of 610 genes known to be involved in NMDs, are expressed in USCs. Interestingly, the expression levels of the majority of NMD genes remain unmodified following USCs MyoD transformation. Most genes involved in the pathogenesis of all 16 groups of NMDs are well represented except for channelopathies and malignant hyperthermia related genes. All tested proteins showed high expression values, suggesting consistency between transcription and protein representation in USCs.Conclusion: Our data suggest that USCs are human cells, obtainable by non-invasive means, which might be used as a patient-specific cell model to study neuromuscular disease-causing genes and that they can be likely adopted for a variety of in vitro functional studies such as mutation characterization, pathway identification, and drug screening.
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- 2021
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10. SERPINA1 Gene Promoter Is Differentially Methylated in Peripheral Blood Mononuclear Cells of Pregnant Women
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John Charles Rotondo, Lucia Oton-Gonzalez, Rita Selvatici, Paola Rizzo, Rita Pavasini, Gianluca Calogero Campo, Carmen Lanzillotti, Chiara Mazziotta, Monica De Mattei, Mauro Tognon, and Fernanda Martini
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SERPINA1 ,Alpha1-AntiTrypsin ,methylation ,epigenetics ,peripheral blood mononuclear cell ,pregnancy ,Biology (General) ,QH301-705.5 - Abstract
SERine Protein INhibitor-A1 (SERPINA1) is an inducible blood cell gene coding for alpha1-antitrypsin (AAT), a plasma protease inhibitor whose circulating levels are raised during inflammation, infection and advanced pregnancy. DNA methylation has been suggested to play a role in SERPINA1 gene expression regulation in peripheral blood mononuclear cells (PBMCs). The methylation status of SERPINA1 in PBMCs is unknown. The aim of this study was to evaluate the methylation profile of the SERPINA1 promoter in PBMC. To this purpose PBMCs and serum were collected from healthy subjects (HS) (n = 75), including blood donors (BD) (n = 25), pregnant women at early pregnancy (EP) (n = 25), i.e., within the first trimester, and pregnant women at late pregnancy (LP) (n = 25), i.e., at the third trimester. DNA from PBMCs was treated with sodium bisulfite and PCR amplified for SERPINA1 gene promoter, followed by sequencing analyses. AAT serum levels were determined by ELISA test. SERPINA1 was found hypermethylated in 58.7% of HS. The prevalence of SERPINA1 hypermethylation was significantly higher in BD (68%) and EP (88%) than in LP (20%) (p < 0.01). The median serum AAT concentration was 1.07, 0.63, and 3.15 mg/ml in BD, EP, and LP, respectively (p < 0.05, BD and EP vs LP). This study indicates, for the first time, that SERPINA1 gene promoter is differentially methylated in PBMCs from HS. Likely, modulation of the methylation may be a novel epigenetic regulator mechanism of AAT expression in the PBMC of HS. Therefore, SERPINA1 gene promoter methylation may represent an epigenetic biomarker of PBMCs in healthy subjects.
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- 2020
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11. Tumor Necrosis Factor Receptor SF10A (TNFRSF10A) SNPs Correlate With Corticosteroid Response in Duchenne Muscular Dystrophy
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Chiara Passarelli, Rita Selvatici, Alberto Carrieri, Francesca Romana Di Raimo, Maria Sofia Falzarano, Fernanda Fortunato, Rachele Rossi, Volker Straub, Katie Bushby, Mojgan Reza, Irina Zharaieva, Adele D’Amico, Enrico Bertini, Luciano Merlini, Patrizia Sabatelli, Paola Borgiani, Giuseppe Novelli, Sonia Messina, Marika Pane, Eugenio Mercuri, Mireille Claustres, Sylvie Tuffery-Giraud, Annemieke Aartsma-Rus, Pietro Spitali, Peter A. C. T’Hoen, Hanns Lochmüller, Kristin Strandberg, Cristina Al-Khalili, Ekaterina Kotelnikova, Michael Lebowitz, Elena Schwartz, Francesco Muntoni, Chiara Scapoli, and Alessandra Ferlini
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biomarker ,corticosteroid (betamethasone) ,receptor ,TNFR ,Duchenne ,Genetics ,QH426-470 - Abstract
BackgroundDuchenne muscular dystrophy (DMD) is a rare and severe X-linked muscular dystrophy in which the standard of care with variable outcome, also due to different drug response, is chronic off-label treatment with corticosteroids (CS). In order to search for SNP biomarkers for corticosteroid responsiveness, we genotyped variants across 205 DMD-related genes in patients with differential response to steroid treatment.Methods and FindingsWe enrolled a total of 228 DMD patients with identified dystrophin mutations, 78 of these patients have been under corticosteroid treatment for at least 5 years. DMD patients were defined as high responders (HR) if they had maintained the ability to walk after 15 years of age and low responders (LR) for those who had lost ambulation before the age of 10 despite corticosteroid therapy. Based on interactome mapping, we prioritized 205 genes and sequenced them in 21 DMD patients (discovery cohort or DiC = 21). We identified 43 SNPs that discriminate between HR and LR. Discriminant Analysis of Principal Components (DAPC) prioritized 2 response-associated SNPs in the TNFRSF10A gene. Validation of this genotype was done in two additional larger cohorts composed of 46 DMD patients on corticosteroid therapy (validation cohorts or VaC1), and 150 non ambulant DMD patients and never treated with corticosteroids (VaC2). SNP analysis in all validation cohorts (N = 207) showed that the CT haplotype is significantly associated with HR DMDs confirming the discovery results.ConclusionWe have shown that TNFRSF10A CT haplotype correlates with corticosteroid response in DMD patients and propose it as an exploratory CS response biomarker.
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- 2020
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12. The Genetic Landscape of Dystrophin Mutations in Italy: A Nationwide Study
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Marcella Neri, Rachele Rossi, Cecilia Trabanelli, Antonio Mauro, Rita Selvatici, Maria Sofia Falzarano, Noemi Spedicato, Alice Margutti, Paola Rimessi, Fernanda Fortunato, Marina Fabris, Francesca Gualandi, Giacomo Comi, Silvana Tedeschi, Manuela Seia, Chiara Fiorillo, Monica Traverso, Claudio Bruno, Emiliano Giardina, Maria Rosaria Piemontese, Giuseppe Merla, Milena Cau, Monica Marica, Carmela Scuderi, Eugenia Borgione, Alessandra Tessa, Guia Astrea, Filippo Maria Santorelli, Luciano Merlini, Marina Mora, Pia Bernasconi, Sara Gibertini, Valeria Sansone, Tiziana Mongini, Angela Berardinelli, Antonella Pini, Rocco Liguori, Massimiliano Filosto, Sonia Messina, Gianluca Vita, Antonio Toscano, Giuseppe Vita, Marika Pane, Serenella Servidei, Elena Pegoraro, Luca Bello, Lorena Travaglini, Enrico Bertini, Adele D'Amico, Manuela Ergoli, Luisa Politano, Annalaura Torella, Vincenzo Nigro, Eugenio Mercuri, and Alessandra Ferlini
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dystrophin ,muscular dystrophy ,nationwide study ,exon skipping therapy ,read-through therapy ,Genetics ,QH426-470 - Abstract
Dystrophinopathies are inherited diseases caused by mutations in the dystrophin (DMD) gene for which testing is mandatory for genetic diagnosis, reproductive choices and eligibility for personalized trials. We genotyped the DMD gene in our Italian cohort of 1902 patients (BMD n = 740, 39%; DMD n =1162, 61%) within a nationwide study involving 11 diagnostic centers in a 10-year window (2008–2017). In DMD patients, we found deletions in 57%, duplications in 11% and small mutations in 32%. In BMD, we found deletions in 78%, duplications in 9% and small mutations in 13%. In BMD, there are a higher number of deletions, and small mutations are more frequent than duplications. Among small mutations that are generally frequent in both phenotypes, 44% of DMD and 36% of BMD are nonsense, thus, eligible for stop codon read-through therapy; 63% of all out-of-frame deletions are eligible for single exon skipping. Patients were also assigned to Italian regions and showed interesting regional differences in mutation distribution. The full genetic characterization in this large, nationwide cohort has allowed us to draw several correlations between DMD/BMD genotype landscapes and mutation frequency, mutation types, mutation locations along the gene, exon/intron architecture, and relevant protein domain, with effects on population genetic characteristics and new personalized therapies.
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- 2020
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13. Identification of a New Mutation in RSK2, the Gene for Coffin–Lowry Syndrome (CLS), in Two Related Patients with Mild and Atypical Phenotypes
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Mariateresa Di Stazio, Stefania Bigoni, Nicola Iuso, Josef Vuch, Rita Selvatici, Sheila Ulivi, and Pio Adamo d’Adamo
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RSK2 gene ,Coffin–Lowry syndrome ,intellectual disability ,kinase assay ,functional assay ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
Background: Coffin–Lowry syndrome (CLS) is a syndromic form of X-linked intellectual disability, in which specific associated facial, hand, and skeletal abnormalities are diagnostic features. Methods: In the present study, an unreported missense genetic variant of the ribosomal S6 kinase 2 (RSK2) gene has been identified, by next-generation sequencing, in two related males with two different phenotypes of intellectual disability (ID) and peculiar facial dysmorphisms. We performed functional studies on this variant and another one, already reported in the literature, involving the same amino acid residue but, to date, without an efficient characterization. Results: Our study demonstrated that the two variants involving residue 189 significantly impaired its kinase activity. Conclusions: We detected a loss-of-function RSK2 mutation with loss in kinase activity in a three-generation family with an X-linked ID.
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- 2021
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14. Homozygous Recessive Versican Missense Variation Is Associated With Early Teeth Loss in a Pakistani Family
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Stefania Bigoni, Marcella Neri, Chiara Scotton, Roberto Farina, Patrizia Sabatelli, Chongyi Jiang, Jianguo Zhang, Maria Sofia Falzarano, Rachele Rossi, Davide Ognibene, Rita Selvatici, Francesca Gualandi, Dieter Bosshardt, Paolo Perri, Claudio Campa, Francesco Brancati, Marco Salvatore, Maria Chiara De Stefano, Domenica Taruscio, Leonardo Trombelli, Mingyan Fang, and Alessandra Ferlini
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versican ,human ,periodontium ,dental cementum ,Wagner syndrome ,Genetics ,QH426-470 - Abstract
Only a few genes involved in teeth development and morphology are known to be responsible for tooth abnormalities in Mendelian-inherited diseases. We studied an inbred family of Pakistani origin in which two first-cousin born brothers are affected by early tooth loss with peculiar teeth abnormalities characterized by the absence of cementum formation. Whole exome sequencing revealed a H2665L homozygous sequence variant in the VCAN gene. Dominant splicing mutations in VCAN are known to cause Wagner syndrome or vitreoretinopathy. We explored teeth morphology in these two patients, while versican expression was assessed by western blot analysis. Early signs of vitreoretinopathy were found in the elder brother while the parents were completely negative. Our findings suggest that the homozygous recessive H2665L missense sequence variant impairs the normal morphology of the teeth roots via loss of cementum synthesis, and is also associated with early onset, recessive, Wagner syndrome, thus expanding both the phenotype mutation scenario and the inheritance mode of VCAN mutations.
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- 2019
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15. Detection of Merkel Cell Polyomavirus DNA in Serum Samples of Healthy Blood Donors
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Elisa Mazzoni, John C. Rotondo, Luisa Marracino, Rita Selvatici, Ilaria Bononi, Elena Torreggiani, Antoine Touzé, Fernanda Martini, and Mauro G. Tognon
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Merkel cell polyomavirus ,DNA ,load ,sequence ,serum ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Merkel cell polyomavirus (MCPyV) has been detected in 80% of Merkel cell carcinomas (MCC). In the host, the MCPyV reservoir remains elusive. MCPyV DNA sequences were revealed in blood donor buffy coats. In this study, MCPyV DNA sequences were investigated in the sera (n = 190) of healthy blood donors. Two MCPyV DNA sequences, coding for the viral oncoprotein large T antigen (LT), were investigated using polymerase chain reaction (PCR) methods and DNA sequencing. Circulating MCPyV sequences were detected in sera with a prevalence of 2.6% (5/190), at low-DNA viral load, which is in the range of 1–4 and 1–5 copies/μl by real-time PCR and droplet digital PCR, respectively. DNA sequencing carried out in the five MCPyV-positive samples indicated that the two MCPyV LT sequences which were analyzed belong to the MKL-1 strain. Circulating MCPyV LT sequences are present in blood donor sera. MCPyV-positive samples from blood donors could represent a potential vehicle for MCPyV infection in receivers, whereas an increase in viral load may occur with multiple blood transfusions. In certain patient conditions, such as immune-depression/suppression, additional disease or old age, transfusion of MCPyV-positive samples could be an additional risk factor for MCC onset.
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- 2017
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16. High Human Papillomavirus DNA loads in Inflammatory Middle Ear Diseases
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Nicola Malagutti, John Charles Rotondo, Luca Cerritelli, Claudio Melchiorri, Monica De Mattei, Rita Selvatici, Lucia Oton-Gonzalez, Francesco Stomeo, Manuela Mazzoli, Michela Borin, Beatrice Mores, Andrea Ciorba, Mauro Tognon, Stefano Pelucchi, and Fernanda Martini
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hpv ,virus ,infection ,viral dna load ,inflammation ,middle ear ,chronic otitis media ,Medicine - Abstract
Background. Previous studies reported human papillomaviruses (HPVs) in middle ear tumors, whereas these viruses have been poorly investigated in chronic inflammatory middle ear diseases. We investigated HPVs in non-tumor middle ear diseases, including chronic otitis media (COM). Methods. COM specimens (n = 52), including chronic suppurative otitis media (CSOM) (n =38) and cholesteatoma (COMC) (n = 14), as well as normal middle ear (NME) specimens (n = 56) were analyzed. HPV sequences and DNA loads were analyzed by quantitative-PCR. HPV genotyping was performed by direct sequencing. Results. HPV DNA was detected in 23% (12/52) of COM and in 30.4% (17/56) of NME (p > 0.05). Specifically, HPV DNA sequences were found in 26.3% (10/38) of CSOM and in 14.3% (2/14) of COMC (p > 0.05). Interestingly, the HPV DNA load was higher in COMC (mean 7.47 copy/cell) than in CSOM (mean 1.02 copy/cell) and NME (mean 1.18 copy/cell) (P = 0.03 and P = 0.017 versus CSOM and NME, respectively). HPV16 and HPV18 were the main genotypes detected in COMC, CSOM and NME. Conclusions. These data suggest that HPV may infect the middle ear mucosa, whereas HPV-positive COMCs are associated with higher viral DNA loads as compared to NME.
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- 2020
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17. Data from Merkel Cell Carcinomas Arising in Autoimmune Disease Affected Patients Treated with Biologic Drugs, Including Anti-TNF
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Mauro Tognon, Fernanda Martini, Rita Selvatici, Françoise Antoine Touzé, Pauline Gaboriaud, Roberta Gafà, Giovanni Lanza, Valentina Foschi, Marcello Govoni, Andrea Puozzo, Ilaria Bononi, and John Charles Rotondo
- Abstract
Purpose: The purpose of this investigation was to characterize Merkel cell carcinomas (MCC) arisen in patients affected by autoimmune diseases and treated with biologic drugs.Experimental Design: Serum samples from patients with MCC were analyzed for the presence and titer of antibodies against antigens of the oncogenic Merkel cell polyomavirus (MCPyV). IgG antibodies against the viral oncoproteins large T (LT) and small T (ST) antigens and the viral capsid protein-1 were analyzed by indirect ELISA. Viral antigens were recombinant LT/ST and virus-like particles (VLP), respectively. MCPyV DNA sequences were studied using PCR methods in MCC tissues and in peripheral blood mononuclear cells (PBMC). Immunohistochemical (IHC) analyses were carried out in MCC tissues to reveal MCPyV LT oncoprotein.Results: MCPyV DNA sequences identified in MCC tissues showed 100% homology with the European MKL-1 strain. PBMCs from patients tested MCPyV-negative. Viral DNA loads in the three MCC tissues were in the 0.1 to 30 copy/cell range. IgG antibodies against LT/ST were detected in patients 1 and 3, whereas patient 2 did not react to the MCPyV LT/ST antigen. Sera from the three patients with MCC contained IgG antibodies against MCPyV VP1. MCC tissues tested MCPyV LT-antigen–positive in IHC assays, with strong LT expression with diffuse nuclear localization. Normal tissues tested MCPyV LT–negative when employed as control.Conclusions: We investigated three new MCCs in patients affected by rheumatologic diseases treated with biologic drugs, including TNF. A possible cause–effect relationship between pharmacologic immunosuppressive treatment and MCC onset is suggested. Indeed, MCC is associated with MCPyV LT oncoprotein activity. Clin Cancer Res; 23(14); 3929–34. ©2017 AACR.
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- 2023
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18. Supplementary Data - Cases from Merkel Cell Carcinomas Arising in Autoimmune Disease Affected Patients Treated with Biologic Drugs, Including Anti-TNF
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Mauro Tognon, Fernanda Martini, Rita Selvatici, Françoise Antoine Touzé, Pauline Gaboriaud, Roberta Gafà, Giovanni Lanza, Valentina Foschi, Marcello Govoni, Andrea Puozzo, Ilaria Bononi, and John Charles Rotondo
- Abstract
in this supplentary data file cases are reported
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- 2023
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19. RNA-seq in DMD urinary stem cells recognized muscle-related transcription signatures and addressed the identification of atypical mutations by whole-genome sequencing
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Silvia Zia, Valeria A. Sansone, Barbara Roda, Pierluigi Reschiglian, Alessandra Ferlini, Wenyan Li, Francesca Gualandi, Andrea Barp, Andrea Grilli, Zhiyuan Lu, Silvio Bicciato, Federica Ricci, M. Fabris, Madhuri Hegde, Luca Bello, Tiziana Mongini, Paola Rimessi, Reem El Dani, Rachele Rossi, Maria Sofia Falzarano, Elena Pegoraro, Mingyan Fang, and Rita Selvatici
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Antisense therapy ,musculoskeletal diseases ,Mutation ,congenital, hereditary, and neonatal diseases and abnormalities ,Duchenne muscular dystrophy ,government.form_of_government ,Socio-culturale ,RNA-Seq ,Computational biology ,Biology ,QH426-470 ,medicine.disease_cause ,medicine.disease ,Article ,Gene expression profiling ,Transcription (biology) ,RNA splicing ,medicine ,government ,biology.protein ,Genetics ,Molecular Medicine ,Dystrophin ,Genetics (clinical) - Abstract
Summary Urinary stem cells (USCs) are a non-invasive, simple, and affordable cell source to study human diseases. Here we show that USCs are a versatile tool for studying Duchenne muscular dystrophy (DMD), since they are able to address RNA signatures and atypical mutation identification. Gene expression profiling of DMD individuals’ USCs revealed a profound deregulation of inflammation, muscle development, and metabolic pathways that mirrors the known transcriptional landscape of DMD muscle and worsens following USCs’ myogenic transformation. This pathogenic transcription signature was reverted by an exon-skipping corrective approach, suggesting the utility of USCs in monitoring DMD antisense therapy. The full DMD transcript profile performed in USCs from three undiagnosed DMD individuals addressed three splicing abnormalities, which were decrypted and confirmed as pathogenic variations by whole-genome sequencing (WGS). This combined genomic approach allowed the identification of three atypical and complex DMD mutations due to a deep intronic variation and two large inversions, respectively. All three mutations affect DMD gene splicing and cause a lack of dystrophin protein production, and one of these also generates unique fusion genes and transcripts. Further characterization of USCs using a novel cell-sorting technology (Celector) highlighted cell-type variability and the representation of cell-specific DMD isoforms. Our comprehensive approach to USCs unraveled RNA, DNA, and cell-specific features and demonstrated that USCs are a robust tool for studying and diagnosing DMD., We defined urinary stem cell (USC) RNA-seq signatures and provided evidence that they are a non-invasive, affordable cell source to study Duchenne muscular dystrophy (DMD), an X-linked disease, due to dystrophin gene mutations. Based on USCs’ RNA profiling and whole-genome sequencing (WGS), we identified three undetected atypical DMD mutations.
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- 2022
20. Report of a novel ATP7A mutation causing distal motor neuropathy
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Alessandra Ferlini, Francesca Gualandi, Mert Karakaya, Rocco Liguori, Stefano Squarzoni, Fernanda Fortunato, V. Simioni, Marcella Neri, Elisabetta Sette, Domenico De Grandis, Alex Incensi, Vincent Timmerman, Markus Storbeck, Rita Selvatici, Valeria Tugnoli, C. Scotton, Brunhilde Wirth, Stefania Bigoni, Vincenzo Donadio, Gualandi F., Sette E., Fortunato F., Bigoni S., De Grandis D., Scotton C., Selvatici R., Neri M., Incensi A., Liguori R., Storbeck M., Karakaya M., Simioni V., Squarzoni S., Timmerman V., Wirth B., Donadio V., Tugnoli V., and Ferlini A.
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Male ,0301 basic medicine ,Proband ,Retrograde ejaculation ,Pathology ,medicine.medical_specialty ,Peripheral neuropathy ,ATP7A ,Occipital horn syndrome ,Socio-culturale ,medicine.disease_cause ,Cutis Laxa ,Muscular Atrophy, Spinal ,Autonomic neuropathy ,03 medical and health sciences ,0302 clinical medicine ,medicine ,Humans ,Missense mutation ,ATP7A mutation ,Motor Neuron Disease ,Menkes Kinky Hair Syndrome ,Genetic Association Studies ,Genetics (clinical) ,Aged ,Adenosine Triphosphatases ,Mutation ,business.industry ,Middle Aged ,medicine.disease ,3. Good health ,030104 developmental biology ,Neurology ,Copper-Transporting ATPases ,Pediatrics, Perinatology and Child Health ,Ehlers-Danlos Syndrome ,Menkes disease ,Human medicine ,Neurology (clinical) ,business ,030217 neurology & neurosurgery - Abstract
We describe a novel ATP7A gene mutation associated with distal motor neuropathy, mild connective tissue abnormalities and autonomic disturbances. Next-generation sequencing analysis of a lower-motor neuron diseases gene panel was performed in two sibs presenting with distal motor neuropathy plus an autonomic dysfunction, which main manifestations were retrograde ejaculation, diarrhea and hyperhydrosis. Probands underwent dysmorphological, neurological, electrophysiological as well as biochemical evaluations and somatic and autonomic innervation studies on skin biopsies. A novel missense mutation (p.A991D) was identified in the X-linked ATP7A gene, segregating in both brothers and inherited from their healthy mother. Biochemical studies on patients’ blood samples showed reduced serum copper and ceruloplasmin levels. Clinical and neurophysiological evaluation documented dysautonomic signs. Quantitative evaluation of skin innervation disclosed a small fiber neuropathy with prevalent autonomic involvement. Mutations in the ATP7A gene, encoding for a copper-transporting ATPase, have been associated with the severe infantile neurodegenerative Menkes disease and in its milder variant, the Occipital Horn Syndrome. Only two ATP7A mutations were previously reported as causing, a pure axonal distal motor neuropathy (dHMN-SMAX3). The phenotype we report represents a further example of this rare genotype-phenotype correlation and highlights the possible occurrence in SMAX3 of autonomic disturbances, as described for Menkes disease and Occipital Horn Syndrome.
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- 2019
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21. Identification of a New Mutation in RSK2, the Gene for Coffin–Lowry Syndrome (CLS), in Two Related Patients with Mild and Atypical Phenotypes
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Rita Selvatici, Josef Vuch, Mariateresa Di Stazio, Stefania Bigoni, Sheila Ulivi, Pio D'Adamo, Nicola Iuso, Di Stazio, Mariateresa, Bigoni, Stefania, Iuso, Nicola, Vuch, Josef, Selvatici, Rita, Ulivi, Sheila, and D’Adamo, Pio Adamo
- Subjects
kinase assay ,Socio-culturale ,coffin ,RSK2 gene ,Neurosciences. Biological psychiatry. Neuropsychiatry ,Biology ,functional assay ,intellectual disability ,lowry syndrome ,rsk2 gene ,medicine.disease_cause ,Coffin–Lowry syndrome ,Ribosomal s6 kinase ,Intellectual disability ,medicine ,Missense mutation ,Kinase activity ,Gene ,Genetics ,Mutation ,General Neuroscience ,medicine.disease ,Phenotype ,biology.protein ,Functional assay ,Kinase assay ,RC321-571 - Abstract
Background: Coffin–Lowry syndrome (CLS) is a syndromic form of X-linked intellectual disability, in which specific associated facial, hand, and skeletal abnormalities are diagnostic features. Methods: In the present study, an unreported missense genetic variant of the ribosomal S6 kinase 2 (RSK2) gene has been identified, by next-generation sequencing, in two related males with two different phenotypes of intellectual disability (ID) and peculiar facial dysmorphisms. We performed functional studies on this variant and another one, already reported in the literature, involving the same amino acid residue but, to date, without an efficient characterization. Results: Our study demonstrated that the two variants involving residue 189 significantly impaired its kinase activity. Conclusions: We detected a loss-of-function RSK2 mutation with loss in kinase activity in a three-generation family with an X-linked ID.
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- 2021
22. Functional Characterization of Two Novel Mutations in
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Marianna Farnè, Matteo Bertini, Annarita Armaroli, Alessandro Brieda, Alessandra Ferlini, Claudio Rapezzi, René Massimiliano Marsano, Andrea Gerbino, Rikard Blunck, Cristina Balla, Francesco Vitali, Rita Selvatici, Annamaria De Luca, Antonella Liantonio, Francesca Gualandi, Elena Conte, and Paola Imbrici
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0301 basic medicine ,Proband ,Male ,Models, Molecular ,Protein Conformation ,Na+ current ,Action Potentials ,030204 cardiovascular system & hematology ,medicine.disease_cause ,Sudden cardiac death ,NAV1.5 Voltage-Gated Sodium Channel ,Electrocardiography ,0302 clinical medicine ,Missense mutation ,Family history ,Biology (General) ,SCN5A ,Spectroscopy ,Brugada syndrome ,Brugada Syndrome ,Aged, 80 and over ,Mutation ,General Medicine ,Computer Science Applications ,Pedigree ,Chemistry ,Protein Transport ,Phenotype ,Italy ,Cardiology ,Female ,medicine.drug ,medicine.medical_specialty ,Genotype ,QH301-705.5 ,Socio-culturale ,Models, Biological ,Article ,Catalysis ,Inorganic Chemistry ,03 medical and health sciences ,Mexiletine ,Internal medicine ,medicine ,Humans ,Genetic Predisposition to Disease ,Physical and Theoretical Chemistry ,Molecular Biology ,QD1-999 ,Alleles ,Genetic Association Studies ,Aged ,business.industry ,Sodium channel ,Organic Chemistry ,medicine.disease ,electrophysiology ,030104 developmental biology ,Amino Acid Substitution ,business - Abstract
Background. Brugada syndrome (BrS) is an autosomal dominantly inherited cardiac disease characterized by “coved type” ST-segment elevation in the right precordial leads, high susceptibility to ventricular arrhythmia and a family history of sudden cardiac death. The SCN5A gene, encoding for the cardiac voltage-gated sodium channel Nav1.5, accounts for ~20–30% of BrS cases and is considered clinically relevant. Methods. Here, we describe the clinical findings of two Italian families affected by BrS and provide the functional characterization of two novel SCN5A mutations, the missense variant Pro1310Leu and the in-frame insertion Gly1687_Ile1688insGlyArg. Results. Despite being clinically different, both patients have a family history of sudden cardiac death and had history of arrhythmic events. The Pro1310Leu mutation significantly reduced peak sodium current density without affecting channel membrane localization. Changes in the gating properties of expressed Pro1310Leu channel likely account for the loss-of-function phenotype. On the other hand, Gly1687_Ile1688insGlyArg channel, identified in a female patient, yielded a nearly undetectable sodium current. Following mexiletine incubation, the Gly1687_Ile1688insGlyArg channel showed detectable, albeit very small, currents and biophysical properties similar to those of the Nav1.5 wild-type channel. Conclusions. Overall, our results suggest that the degree of loss-of-function shown by the two Nav1.5 mutant channels correlates with the aggressive clinical phenotype of the two probands. This genotype-phenotype correlation is fundamental to set out appropriate therapeutical intervention.
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- 2021
23. Methylation of SERPINA1 gene promoter may predict chronic obstructive pulmonary disease in patients affected by acute coronary syndrome
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Lucia Oton-Gonzalez, Mauro Tognon, Giorgio Aquila, John Charles Rotondo, Gianluca Campo, Monica De Mattei, Fernanda Martini, Rita Pavasini, Rita Selvatici, and Paola Rizzo
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0301 basic medicine ,Spirometry ,Male ,medicine.medical_specialty ,Acute coronary syndrome ,Cell ,030204 cardiovascular system & hematology ,Gastroenterology ,03 medical and health sciences ,Pulmonary Disease, Chronic Obstructive ,0302 clinical medicine ,Predictive Value of Tests ,Internal medicine ,Genetics ,medicine ,COPD ,Humans ,Promoter Regions, Genetic ,Molecular Biology ,Genetics (clinical) ,Aged ,Lung ,medicine.diagnostic_test ,Alpha 1-antitrypsin ,business.industry ,Research ,Chronic obstructive pulmonary disease ,Ambientale ,Promoter ,Methylation ,DNA Methylation ,Middle Aged ,medicine.disease ,ACS ,respiratory tract diseases ,030104 developmental biology ,medicine.anatomical_structure ,DNA methylation ,SERPINA1 ,Female ,business ,Biomarkers ,Developmental Biology - Abstract
Background Diagnostic biomarkers for detecting chronic obstructive pulmonary disease (COPD) in acute coronary syndrome (ACS) patients are not available. SERPINA1, coding for the most potent circulating anti-inflammatory protein in the lung, has been found to be differentially methylated in blood cells from COPD patients. This study aimed to investigate the methylation profile of SERPINA1 in blood cells from ACS patients, with (COPD+) or without COPD (COPD−). Methods Blood samples were from 115 ACS patients, including 30 COPD+ and 85 COPD− according to lung function phenotype, obtained with spirometry. DNA treated with sodium bisulfite was PCR-amplified at SERPINA1 promoter region. Methylation analysis was carried out by sequencing the PCR products. Lymphocytes count in ACS patients was recorded at hospital admission and discharge. Results SERPINA1 was hypermethylated in 24/30 (80%) COPD+ and 48/85 (56.5%) COPD− (p SERPINA1 hypermethylated (1.98 × 103 ± 0.6 cell/µl) than in COPD− carrying SERPINA1 hypomethylated (1.7 × 103 ± 0.48 cell/µl) (p Conclusions SERPINA1 is hypermethylated in blood cells from COPD+ patients. COPD− carrying SERPINA1 hypermethylated and high lymphocytes count may be at risk of COPD development. Therefore, SERPINA1 hypermethylation may represent a potential biomarker for predicting COPD development in ACS patients.
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- 2021
24. APPLICATION OF NEXT GENERATION TECHNOLOGIES
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Sergio Fini, Stefania Bigoni, Marika Pane, Rita Selvatici, Rachele Rossi, Marcella Neri, F. Fortunato, Alessandra Ferlini, Eugenio Mercuri, Francesca Gualandi, E. Bertini, and Alessandra D'Amico
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Neurology ,Pediatrics, Perinatology and Child Health ,Neurology (clinical) ,Genetics (clinical) - Published
- 2021
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25. Chitosan-Shelled Nanobubbles Irreversibly Encapsulate Morpholino Conjugate Antisense Oligonucleotides and Are Ineffective for Phosphorodiamidate Morpholino-Mediated Gene Silencing of DUX4
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Anne Chalotte Marsollier, Julie Dumonceaux, Rita Selvatici, Roberta Cavalli, Maria Sofia Falzarano, Davide Rossi, Virginie Mariot, Alessandra Ferlini, and Monica Argenziano
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0301 basic medicine ,Small interfering RNA ,PMO AON ,FSHD ,nanobubbles ,DUX4silencing ,Morpholino ,Biochemistry ,Viral vector ,NO ,03 medical and health sciences ,0302 clinical medicine ,Drug Discovery ,microRNA ,Genetics ,Gene silencing ,Molecular Biology ,Nuclease ,biology ,Chemistry ,DUX4 silencing ,In vitro ,Cell biology ,030104 developmental biology ,030220 oncology & carcinogenesis ,biology.protein ,Molecular Medicine ,Nanocarriers - Abstract
Orphan drugs, including antisense oligonucleotides (AONs), siRNAs/miRNAs, Cas9 nuclease, and recombinant genes, have recently been made available for rare diseases. However, the main bottleneck for these new therapies is delivery. Drugs/synthetic genes need to reach the affected tissues with minimal off-target effects and immune reactions. AON molecules are currently delivered as backboned naked compounds or via viral vectors. Nanocarriers are considered promising vehicles, able to improve drug distribution by organ targeting and limiting safety issues. We tested perfluoropentane-based nanobubbles (NBs) as vehicles for loading phosphorodiamidate morpholino (PMO) AON to suppress DUX4 expression in a facioscapulohumeral muscular dystrophy cell model. In vitro cell-free analysis demonstrated a good loading capacity of PMO into NBs, while experiments in cell cultures showed lack of therapeutic effect since expression of DUX4 and its targets remained unmodified. We conclude that these types of chitosan-shelled NBs do not release PMO-AON and are therefore not ideal for PMO AON-related therapies.
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- 2021
26. Brugada ECG pattern in hypertrophic cardiomyopathy: Brugada phenocopy or overlapping syndrome?
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Elia De Maria, Francesca Gualandi, Laura Tonelli, Rita Selvatici, Stefano Cappelli, and Ambra Borghi
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congenital, hereditary, and neonatal diseases and abnormalities ,medicine.medical_specialty ,Brugada, Hypertrophic cardiomyopathy, phenocopy ,phenocopy ,NO ,Electrocardiography ,Internal medicine ,medicine ,Humans ,In patient ,cardiovascular diseases ,Brugada Syndrome ,Brugada syndrome ,Phenocopy ,business.industry ,Brugada ,Hypertrophic cardiomyopathy ,Overlapping syndrome ,Cardiomyopathy, Hypertrophic ,medicine.disease ,Phenotype ,Brugada ECG Pattern ,Mutation ,Cardiology ,Cardiology and Cardiovascular Medicine ,business - Abstract
The term phenocopy indicates a condition that imitates one produced by a gene and is also used for acquired Brugada-like ECG manifestations. Cases of Brugada phenocopies are increasingly reported in literature and an international registry is ongoing. We describe two patients with Hypertrophic Cardiomyopathy (HCM) and Brugada ECG pattern. Both patients carried the same pathogenic splicing mutation in MYBPC3 gene (responsible for HCM) while no genetic mutation associated with Brugada Syndrome was identified. To the best of our knowledge, Brugada ECG pattern has been rarely reported in patients with HCM.
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- 2021
27. Chitosan-Shelled Nanobubbles Irreversibly Encapsulate Morpholino Conjugate Antisense Oligonucleotides and Are Ineffective for Phosphorodiamidate Morpholino-Mediated Gene Silencing of
- Author
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Maria Sofia, Falzarano, Monica, Argenziano, Anne Chalotte, Marsollier, Virginie, Mariot, Davide, Rossi, Rita, Selvatici, Julie, Dumonceaux, Roberta, Cavalli, and Alessandra, Ferlini
- Subjects
Chitosan ,Gene Silencing ,Oligonucleotides, Antisense ,Morpholinos - Abstract
Orphan drugs, including antisense oligonucleotides (AONs), siRNAs/miRNAs, Cas9 nuclease, and recombinant genes, have recently been made available for rare diseases. However, the main bottleneck for these new therapies is delivery. Drugs/synthetic genes need to reach the affected tissues with minimal off-target effects and immune reactions. AON molecules are currently delivered as backboned naked compounds or via viral vectors. Nanocarriers are considered promising vehicles, able to improve drug distribution by organ targeting and limiting safety issues. We tested perfluoropentane-based nanobubbles (NBs) as vehicles for loading phosphorodiamidate morpholino (PMO) AON to suppress DUX4 expression in a facioscapulohumeral muscular dystrophy cell model.
- Published
- 2020
28. DMD/BMD - GENETICS
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Rachele Rossi, Valeria A. Sansone, Francesca Gualandi, Maria Sofia Falzarano, Mingyan Fang, Rita Selvatici, Luca Bello, J. Lu, Alessandra Ferlini, and Elena Pegoraro
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Genetics ,Neurology ,business.industry ,Pediatrics, Perinatology and Child Health ,Medicine ,Neurology (clinical) ,business ,Genetics (clinical) - Published
- 2021
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29. Recessive mutations in MSTO1 cause mitochondrial dynamics impairment, leading to myopathy and ataxia
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Anikó Gál, David Weaver, Daniele Ghezzi, Massimo Zeviani, Alice Donati, Marika Pane, Alessandra Ferlini, Annarita Armaroli, Eugenio Mercuri, Rita Selvatici, Marcella Neri, Rachele Rossi, Rahul Phadke, Francesco Muntoni, Alessia Nasca, Imelda Hughes, György Hajnóczky, Antonella Cecconi, Olafur Thor Magnusson, Anna Sarkozy, C. Scotton, Irina Zaharieva, and Apollo - University of Cambridge Repository
- Subjects
0301 basic medicine ,Ataxia ,ataxia ,mitochondrial dynamics ,MSTO1 ,myopathy ,skeletal abnormalities ,Cell Cycle Proteins ,Child ,Child, Preschool ,Cytoskeletal Proteins ,Female ,Humans ,Infant ,Infant, Newborn ,Mitochondrial Dynamics ,Muscular Diseases ,Mutation ,Mitochondrial disease ,Socio-culturale ,Mitochondrion ,Biology ,Compound heterozygosity ,03 medical and health sciences ,Genetics ,medicine ,Ataxia, Mitochondrial dynamics, MSTO1, Myopathy, Skeletal abnormalities ,Preschool ,Myopathy ,Gene ,Genetics (clinical) ,Cerebellar ataxia ,Brief Report ,Newborn ,medicine.disease ,Phenotype ,3. Good health ,030104 developmental biology ,Brief Reports ,medicine.symptom - Abstract
We report here the first families carrying recessive variants in the MSTO1 gene: compound heterozygous mutations were identified in two sisters and in an unrelated singleton case, who presented a multisystem complex phenotype mainly characterized by myopathy and cerebellar ataxia. Human MSTO1 is a poorly studied protein, suggested to have mitochondrial localization and to regulate morphology and distribution of mitochondria. As for other mutations affecting genes involved in mitochondrial dynamics, no biochemical defects typical of mitochondrial disorders were reported. Studies in patients’ fibroblasts revealed that MSTO1 protein levels were strongly reduced, the mitochondrial network was fragmented, and the fusion events among mitochondria were decreased, confirming the deleterious effect of the identified variants and the role of MSTO1 in modulating mitochondrial dynamics. We also found that MSTO1 is mainly a cytosolic protein. These findings indicate recessive mutations in MSTO1 as a new cause for inherited neuromuscular disorders with multisystem features.
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- 2017
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30. NEW GENES AND DISEASES / NGS & RELATED TECHNIQUES
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D. Balestra, Francesca Gualandi, Alessandra Ferlini, Rachele Rossi, Marcella Neri, Marika Pane, Fernanda Fortunato, Rita Selvatici, Eugenio Mercuri, M. Pinotti, and Maria Sofia Falzarano
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Neurology ,Pediatrics, Perinatology and Child Health ,Neurology (clinical) ,Computational biology ,Gene ,Genetics (clinical) - Published
- 2020
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31. POPDC2 a novel susceptibility gene for conduction disorders
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Nashitha Kabir, Eloisa Arbustini, Beatriz Ortiz-Bonnin, Sven Dittmann, Francesca Gualandi, Roland F.R. Schindler, Sven Zumhagen, Birgit Stallmeyer, Rita Selvatici, Alessandra Ferlini, Corinna Friedrich, Susanne Rinné, Lisa Fortmüller, Thomas Brand, Eric Schulze-Bahr, Ursula Herbort-Brand, Niels Decher, Aytug K. Kiper, Larissa Fabritz, Claudio Rapezzi, Medical Research Council (MRC), and British Heart Foundation
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0301 basic medicine ,Sinus bradycardia ,Action Potentials ,Muscle Proteins ,030204 cardiovascular system & hematology ,medicine.disease_cause ,Xenopus laevis ,0302 clinical medicine ,Cardiac Conduction System Disease ,Leukocytes ,Atrioventricular Block ,1102 Cardiorespiratory Medicine and Haematology ,Exome sequencing ,Sinoatrial Node ,Mutation ,Homozygote ,Atrioventricular node ,medicine.anatomical_structure ,Ion channels ,medicine.symptom ,Cardiology and Cardiovascular Medicine ,Arrhythmia ,Heterozygote ,Nonsense mutation ,Socio-culturale ,Mice, Transgenic ,Biology ,Cell Line ,03 medical and health sciences ,Potassium Channels, Tandem Pore Domain ,Heart Conduction System ,Stress, Physiological ,Cardiac conduction ,Exome Sequencing ,medicine ,Bradycardia ,Animals ,Humans ,Genetic Predisposition to Disease ,Molecular Biology ,Genetic Association Studies ,Arrhythmia, Atrioventricular block, Ion channels, Whole exome sequencing ,Sinoatrial node ,Whole exome sequencing ,medicine.disease ,030104 developmental biology ,Cardiovascular System & Hematology ,1116 Medical Physiology ,Cancer research ,RNA ,Atrioventricular block ,Cell Adhesion Molecules - Abstract
Despite recent progress in the understanding of cardiac ion channel function and its role in inherited forms of ventricular arrhythmias, the molecular basis of cardiac conduction disorders often remains unresolved. We aimed to elucidate the genetic background of familial atrioventricular block (AVB) using a whole exome sequencing (WES) approach. In monozygotic twins with a third-degree AVB and in another, unrelated family with first-degree AVB, we identified a heterozygous nonsense mutation in the POPDC2 gene causing a premature stop at position 188 (POPDC2W188*), deleting parts of its cAMP binding-domain. Popeye-domain containing (POPDC) proteins are predominantly expressed in the skeletal muscle and the heart, with particularly high expression of POPDC2 in the sinoatrial node of the mouse. We now show by quantitative PCR experiments that in the human heart the POPDC-modulated two-pore domain potassium (K2P) channel TREK 1 is preferentially expressed in the atrioventricular node. Co-expression studies in Xenopus oocytes revealed that POPDC2W188* causes a loss-of-function with impaired TREK-1 modulation. Consistent with the high expression level of POPDC2 in the murine sinoatrial node, POPDC2W188* knock-in mice displayed stress-induced sinus bradycardia and pauses, a phenotype that was previously also reported for POPDC2 and TREK-1 knock-out mice. We propose that the POPDC2W188* loss-of-function mutation contributes to AVB pathogenesis by an aberrant modulation of TREK 1, highlighting that POPDC2 represents a novel arrhythmia gene for cardiac conduction disorders.
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- 2020
32. Lamin A/C Missense Mutation R216C Pinpoints Overlapping Features Between Brugada Syndrome and Laminopathies
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Francesca Gualandi, Rita Selvatici, Annarita Armaroli, Cristina Balla, Donato Mele, Alessandra Ferlini, Matteo Bertini, Elisabetta Sette, Gianluca Campo, Alessandro Brieda, Mauro Biffi, Cecilia Trabanelli, and Roberto Ferrari
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Genetics ,Lamin A/C ,business.industry ,Brugada syndrome ,translational medical research ,Socio-culturale ,General Medicine ,medicine.disease ,medicine ,Missense mutation ,Brugada syndrome, Lamin A/C, translational medical research ,business ,Lamin - Published
- 2020
33. Ethnicity-related DMD Genotype Landscapes in European and Non-European Countries
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Cristina Rusu, Selma Dounia Bensemmane, Mingyan Fang, Magdalena Sandu, Lyudmilla Angelova, Marcella Neri, Veneta Bojinova, Jadranka Sekelj Fureš, Fernanda Fortunato, Ivan Litvinenko, Maria Judith Molnar, Anna Potulska-Chromik, Oussama Dendane, C. Burloiu, Samira Makri-Mokrane, Daniela Vasile, Monica Panzaru, Zhiyuan Lu, Yamina Sifi, Niculina Butoianu, Oana Alexandra Iuhas, Birute Burnyte, Butnariu Lacramioara, Rachele Rossi, Djawed Bouchenak Khelladi, Ivan Lehman, Cecilia Trabanelli, Velina Guergueltcheva, Mariela Militaru, Léna Szabó, Anna Lusakowska, Mihaela Vintan, Sanja Delin, Monica Mager, Anna Kostera-Pruszczyk, Gabriela Visa, Agnes Herczegfalvi, Yurtsever Vildan, Andriy V. Shatillo, Dmitry Vlodavets, Balint Fekete, Adela Chirita Emandi, Rita Selvatici, Ivan S. Ivanov, Francesca Gualandi, Alessandra Ferlini, Alice Margutti, Diana Epure, and Theodore Kyriakides
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0301 basic medicine ,musculoskeletal diseases ,congenital, hereditary, and neonatal diseases and abnormalities ,Duchenne muscular dystrophy ,Socio-culturale ,Gene modifiers haplotypes ,DMD ,next-generation sequencing ,Gene mutation ,Biology ,Article ,03 medical and health sciences ,Ethnicity ,Genotype ,Europe ,0302 clinical medicine ,Becker muscular dystrophies (BMD) ,medicine ,Multiplex ligation-dependent probe amplification ,Allele ,Genetics (clinical) ,Duchenne muscular dystrophies (DMD) ,Genetics ,DMD gene mutations ,Whole-exome sequencing (WES) ,Haplotype ,medicine.disease ,3. Good health ,Eastern european ,030104 developmental biology ,Mutation (genetic algorithm) ,Neurology (clinical) ,030217 neurology & neurosurgery - Abstract
ObjectiveGenetic diagnosis and mutation identification are now compulsory for Duchenne (DMD) and Becker muscular dystrophies (BMD), which are due to dystrophin (DMD) gene mutations, either for disease prevention or personalized therapies. To evaluate the ethnic-related genetic assortments of DMD mutations, which may impact on DMD genetic diagnosis pipelines, we studied 328 patients with DMD and BMD from non-European countries.MethodsWe performed a full DMD mutation detection in 328 patients from 10 Eastern European countries (Poland, Hungary, Lithuania, Romania, Serbia, Croatia, Bosnia, Bulgaria, Ukraine, and Russia) and 2 non-European countries (Cyprus and Algeria). We used both conventional methods (multiplex ligation-dependent probe amplification [MLPA] followed by gene-specific sequencing) and whole-exome sequencing (WES) as a pivotal study ran in 28 patients where DMD mutations were already identified by standard techniques. WES output was also interrogated for DMD gene modifiers.ResultsWe identified DMD gene mutations in 222 male patients. We identified a remarkable allele heterogeneity among different populations with a mutation landscape often country specific. We also showed that WES is effective for picking up all DMD deletions and small mutations and its adoption could allow a detection rate close to 90% of all occurring mutations. Gene modifiers haplotypes were identified with some ethnic-specific configurations.ConclusionsOur data provide unreported mutation landscapes in different countries, suggesting that ethnicity may orient genetic diagnosis flowchart, which can be adjusted depending on the mutation type frequency, with impact in drug eligibility.
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- 2020
34. Tracing Males From Different Continents by Genotyping JC Polyomavirus in DNA From Semen Samples
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Fernanda Martini, Mauro Tognon, Elisa Mazzoni, Gloria Bonaccorsi, Pantaleo Greco, John Charles Rotondo, Rita Selvatici, and Tommaso Candian
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0301 basic medicine ,Genetics ,Geographic area ,Physiology ,Clinical Biochemistry ,Semen ,Cell Biology ,Biology ,Virology ,DNA sequencing ,03 medical and health sciences ,chemistry.chemical_compound ,030104 developmental biology ,0302 clinical medicine ,chemistry ,Genotype ,Genotyping ,030217 neurology & neurosurgery ,DNA - Abstract
The human JC polyomavirus (JCPyV) is an ubiquitous viral agent infecting approximately 60% of humans. Recently, JCPyV sequences have been detected in semen samples. The aim of this investigation was to test whether semen JCPyV genotyping can be employed to trace the origin continent of males. Semen DNA samples (n = 170) from males of different Continents were investigated by PCR for the polymorphic JCPyV viral capsid protein 1 (VP1) sequences, followed by DNA sequencing. JCPyV sequences were detected with an overall prevalence of 27.6% (47/170). DNA sequencing revealed that European males carried JCPyV types 1A (71.4%), 4 (11.4%), 2B (2.9%), 2D1 (2.9%), and 3A (2.9%). Asians JCPyV type 2D1 (66.7%) and Africans JCPyV types 3A (33.3%) and 1A (33.3%). In 10.6% of males, two different JCPyV genotypes were detected, suggesting that the second JCPyV genotype was acquired in the destination country. This study indicates that the majority of semen samples found to be JCPyV-positive, were infected with the JCPyV genotype found in the geographic area of male origin. Therefore, semen JCPyV genotyping could be employed to trace the origin continent of males. Our findings could be applied to forensic investigations, in case of for instance sexual crimes. Indeed, JCPyV genotyping should enable investigators to make additional detailed profiling of the offender. J. Cell. Physiol. 232: 982–985, 2017. © 2016 Wiley Periodicals, Inc.
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- 2016
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35. Corrigendum to: 'Transcriptional and epigenetic analyses of the DMD locus reveal novel cis-acting DNA elements that govern muscle dystrophin expression'. [Biochim. Biophys. Acta Gene Regul. Mech. 2017 Nov;1860(11):1138–1147.]
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C. Scotton, H. Osman, Alessandra Recchia, Lucia Morandi, Alessandra Ferlini, Marcella Neri, Pia Bernasconi, Paolo Pigini, Lorenzo Maggi, Chiara Passarelli, Matteo Bovolenta, Marina Mora, Annarita Armaroli, Maria Sofia Falzarano, Samuele Gherardi, Rita Selvatici, Giovanni Perini, and Francesca Gualandi
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Genetics ,Biophysics ,Locus (genetics) ,Biology ,Biochemistry ,Cis acting ,chemistry.chemical_compound ,chemistry ,Structural Biology ,biology.protein ,Epigenetics ,Dystrophin ,Molecular Biology ,Gene ,DNA - Published
- 2020
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36. SMCHD1 mutation spectrum for facioscapulohumeral muscular dystrophy type 2 (FSHD2) and Bosma arhinia microphthalmia syndrome (BAMS) reveals disease-specific localisation of variants in the ATPase domain
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Teresinha Evangelista, Silvère M. van der Maarel, Sabrina Sacconi, Meindert Lamers, Steven A. Moore, Nienke van der Stoep, Natalie D Shaw, Tahseen Mozaffar, David San Leon Granado, Richard J.L.F. Lemmers, Volker Straub, Alessandra Ferlini, Ana Töpf, Rita Selvatici, Patrick J. van der Vliet, Rabi Tawil, Virginia Kimonis, Baziel G.M. van Engelen, Katherine Johnson, and Nicol C. Voermans
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Male ,DUX4 ,Chromosomal Proteins, Non-Histone ,ATPase ,Mutation, Missense ,Socio-culturale ,Locus (genetics) ,Nose ,ATPase domain ,Choanal Atresia ,Article ,Protein Domains ,Genetics ,medicine ,Missense mutation ,Facioscapulohumeral muscular dystrophy ,Humans ,Microphthalmos ,Genetics (clinical) ,BAMS ,Adenosine Triphosphatases ,FSHD ,D4Z4 ,biology ,SMCHD1 ,food and beverages ,Genetic Variation ,Methylation ,DNA Methylation ,medicine.disease ,Disorders of movement Donders Center for Medical Neuroscience [Radboudumc 3] ,Phenotype ,Muscular Dystrophy, Facioscapulohumeral ,mutation spectrum ,Mutation ,biology.protein ,Female ,DNA hypomethylation - Abstract
BackgroundVariants in the Structural Maintenance of Chromosomes flexible Hinge Domain-containing protein 1 (SMCHD1) can cause facioscapulohumeral muscular dystrophy type 2 (FSHD2) and the unrelated Bosma arhinia microphthalmia syndrome (BAMS). In FSHD2, pathogenic variants are found anywhere in SMCHD1 while in BAMS, pathogenic variants are restricted to the extended ATPase domain. Irrespective of the phenotypic outcome, both FSHD2-associated and BAMS-associated SMCHD1 variants result in quantifiable local DNA hypomethylation. We compared FSHD2, BAMS and non-pathogenic SMCHD1 variants to derive genotype–phenotype relationships.MethodsExamination of SMCHD1 variants and methylation of the SMCHD1-sensitive FSHD locus DUX4 in 187 FSHD2 families, 41 patients with BAMS and in control individuals. Analysis of variants in a three-dimensional model of the ATPase domain of SMCHD1.ResultsDUX4 methylation analysis is essential to establish pathogenicity of SMCHD1 variants. Although the FSHD2 mutation spectrum includes all types of variants covering the entire SMCHD1 locus, missense variants are significantly enriched in the extended ATPase domain. Identification of recurrent variants suggests disease-specific residues for FSHD2 and in BAMS, consistent with a largely disease-specific localisation of variants in SMCHD1.ConclusionsThe localisation of missense variants within the ATPase domain of SMCHD1 may contribute to the differences in phenotypic outcome.
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- 2019
37. International-DMD (IDMD): a PTC Therapeutics-supported diagnostic project to widely identify Dystrophin mutations by NGS technologies
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Alessandra Ferlini, Sergio Fini, Rachele Rossi, Cecilia Trabanelli, Rita Selvatici, Paola Rimessi, and Francesca Gualandi
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Neurology ,biology ,business.industry ,Pediatrics, Perinatology and Child Health ,biology.protein ,Medicine ,Socio-culturale ,Neurology (clinical) ,Computational biology ,business ,Dystrophin ,Genetics (clinical) - Published
- 2018
38. Detection of Merkel Cell Polyomavirus DNA in Serum Samples of Healthy Blood Donors
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Elena Torreggiani, Ilaria Bononi, Fernanda Martini, Elisa Mazzoni, John Charles Rotondo, Mauro Tognon, Antoine Touzé, Luisa Marracino, Rita Selvatici, Università degli Studi di Ferrara (UniFE), Infectiologie et Santé Publique (UMR ISP), Institut National de la Recherche Agronomique (INRA)-Université de Tours, Grants from the Associazione Italiana per la Ricerca sul Cancro (AIRC), Milan, grant IG 16046, Associazione Sammarinese contro le Leucemie e le Emopatie Maligne (ASLEM), Republica di San Marino, grant 2016 MT, LIONS Club International, District 108 TB, Italy, grant UNIFE 2015, Fondazione Cassa di Risparmio di Cento, grant 2015, and University of Ferrara, Fondo di Ateneo per la Ricerca (FAR), grants 2015–2017., Martini, Fernanda, Tognon, Mauro G, and Institut National de la Recherche Agronomique (INRA)-Université de Tours (UT)
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0301 basic medicine ,Cancer Research ,Detection of Merkel Cell Polyomavirus, DNA, Serum Samples, Healthy Blood Donors ,Virologie ,Merkel cell polyomavirus ,chemistry.chemical_compound ,Economica ,0302 clinical medicine ,cellule de merkel ,infection virale ,Dna viral ,Original Research ,séquence d'adn ,lcsh:Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,3. Good health ,sérum sanguin ,medicine.anatomical_structure ,Oncology ,030220 oncology & carcinogenesis ,[SDV.MP.VIR]Life Sciences [q-bio]/Microbiology and Parasitology/Virology ,Merkel cell ,Viral load ,polyomavirus ,MCPyV Infection ,Socio-culturale ,Médecine humaine et pathologie ,DNA ,load ,sequence ,serum ,Biology ,lcsh:RC254-282 ,DNA sequencing ,03 medical and health sciences ,Virology ,medicine ,Serum Samples ,Detection of Merkel Cell Polyomavirus ,transfusion ,Healthy Blood Donors ,Ambientale ,Serum samples ,biology.organism_classification ,030104 developmental biology ,chemistry ,Human health and pathology ,[SDV.MHEP]Life Sciences [q-bio]/Human health and pathology - Abstract
International audience; Merkel cell polyomavirus (MCPyV) has been detected in 80% of Merkel cell carcinomas (MCC). In the host, the MCPyV reservoir remains elusive. MCPyV DNA sequences were revealed in blood donor buffy coats. In this study, MCPyV DNA sequences were investigated in the sera (n = 190) of healthy blood donors. Two MCPyV DNA sequences, coding for the viral oncoprotein large T antigen (LT), were investigated using polymerase chain reaction (PCR) methods and DNA sequencing. Circulating MCPyV sequences were detected in sera with a prevalence of 2.6% (5/190), at low-DNA viral load, which is in the range of 1-4 and 1-5 copies/μl by real-time PCR and droplet digital PCR, respectively. DNA sequencing carried out in the five MCPyV-positive samples indicated that the two MCPyV LT sequences which were analyzed belong to the MKL-1 strain. Circulating MCPyV LT sequences are present in blood donor sera. MCPyV-positive samples from blood donors could represent a potential vehicle for MCPyV infection in receivers, whereas an increase in viral load may occur with multiple blood transfusions. In certain patient conditions, such as immune-depression/suppression, additional disease or old age, transfusion of MCPyV-positive samples could be an additional risk factor for MCC onset.
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- 2017
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39. Gene Expression Changes in Progression of Cervical Neoplasia Revealed by Microarray Analysis of Cervical Neoplastic Keratinocytes
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Cristian Bassi, Giovanni Lanza, Roberta Gafà, Manuela Ferracin, Roberto Marci, Massimo Negrini, Stefania Torresani, Mauro Tognon, Paola Garutti, Silvia Bosi, Fernanda Martini, Rita Selvatici, Eros Magri, and John Charles Rotondo
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Regulation of gene expression ,Candidate gene ,Physiology ,Microarray analysis techniques ,viruses ,Clinical Biochemistry ,virus diseases ,Cancer ,Cell Biology ,Biology ,medicine.disease ,Cervical intraepithelial neoplasia ,medicine.disease_cause ,Molecular biology ,female genital diseases and pregnancy complications ,Gene expression ,medicine ,Phosphoglycerate dehydrogenase ,Carcinogenesis ,neoplasms - Abstract
To evaluate the gene expression changes involved in neoplastic progression of cervical intraepithelial neoplasia. Using microarray analysis, large-scale gene expression profile was carried out on HPV16-CIN2, HPV16-CIN3, and normal cervical keratinocytes derived from two HPV16-CIN2, two HPV-CIN3 lesions, and two corresponding normal cervical tissues, respectively. Differentially expressed genes were analyzed in normal cervical keratinocytes compared with HPV16-CIN2 keratinocytes and in HPV16-CIN2 keratinocytes compared with HPV16-CIN3 keratinocytes; 37 candidate genes with continuously increasing or decreasing expression during CIN progression were identified. One of these genes, phosphoglycerate dehydrogenase, was chosen for further characterization. Quantitative reverse transcription-polymerase chain reaction and immunohistochemical analysis confirmed that expression of phosphoglycerate dehydrogenase consistently increases during progression of CIN toward cancer. Gene expression changes occurring during CIN progression were investigated using microarray analysis, for the first time, in CIN2 and CIN3 keratinocytes naturally infected with HPV16. Phosphoglycerate dehydrogenase is likely to be associated with tumorigenesis and may be a potential prognostic marker for CIN progression.
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- 2014
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40. EP.61DMD gene molecular genetic characterization in Eastern Europe and non European countries
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B. Buldrini, Cecilia Trabanelli, T. Kyriakides, B. Burnyte, Marcella Neri, Velina Guergueltcheva, Paola Rimessi, Rita Selvatici, A. Potulska, A. Emandi, Francesca Gualandi, M. Molnar, A. Shatillo, Y. Sifi, Fernanda Fortunato, Sergio Fini, I. Lehman, Agnes Herczegfalvi, Alessandra Ferlini, and D. Vlodavets
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Genetics ,Neurology ,Pediatrics, Perinatology and Child Health ,Neurology (clinical) ,Biology ,Gene ,Genetics (clinical) - Published
- 2019
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41. P.134Physical and transcriptional characterization of human urinary stem cell populations
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Pierluigi Reschiglian, Barbara Roda, Alessandra Ferlini, Silvia Zia, Rachele Rossi, Zhiyuan Lu, Mingyan Fang, R. El Dani, N. Spedicato, Silvio Bicciato, Rita Selvatici, A. Margutti, Maria Sofia Falzarano, Francesca Gualandi, and Andrea Grilli
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Neurology ,Urinary system ,Pediatrics, Perinatology and Child Health ,Neurology (clinical) ,Biology ,Stem cell ,Molecular biology ,Genetics (clinical) - Published
- 2019
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42. In vitro mitochondrial failure and oxidative stress mimic biochemical features of Alzheimer disease
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Luca Marani, Rita Selvatici, Silvia Marino, and Anna Siniscalchi
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Nitrogen ,tau Proteins ,In Vitro Techniques ,Pharmacology ,Mitochondrion ,medicine.disease_cause ,Neuroprotection ,Antioxidants ,GSK3 ,Rats, Sprague-Dawley ,Glycogen Synthase Kinase 3 ,Cellular and Molecular Neuroscience ,chemistry.chemical_compound ,Alzheimer Disease ,medicine ,Animals ,Sodium azide ,Hydrogen peroxide ,Tau ,p35/25 ,BACE1 ,Phosphorylation ,Cholinergic neuron ,Glycogen Synthase Kinase 3 beta ,Glutamate receptor ,Cell Biology ,medicine.disease ,Ascorbic acid ,Mitochondria ,Rats ,Oxidative Stress ,Neuroprotective Agents ,chemistry ,Biochemistry ,Trolox ,Alzheimer's disease ,Oxidative stress - Abstract
Primary cortical neurons exposed to the mitochondrial toxin NaN3 (0.1-3 mM) were submitted to oxidative stress with H2O2 (30-150 μM), to mimic conditions observed in neurodegenerative disorders. The effects of such treatment on a series of parameters useful in characterizing neuronal damage were investigated: (i) the basal release of glutamate, evaluated as (3)H-d-Aspartate efflux, was sharply, concentration-dependently, increased; (ii) the phosphorylation status of intracellular markers known to be involved in the neurodegenerative processes, in particular in Alzheimer disease: tau and GSK3β were increased, as well as the protein level of β-secretase (BACE1) and p35/25 evaluated by Western blotting, while (iii) the cell metabolic activity, measured with the MTT method, was reduced, in a concentration- and time-dependent manner. The latter effect, as well as tau hyperphosphorylation, was prevented both by a mixture of antioxidant drugs (100 μM ascorbic acid, 10 μM trolox, 100 μM glutathione) and by the anti-Alzheimer drug, memantine, 20 μM. Since it is well known that hippocampal cholinergic neurons are particularly affected in Alzheimer disease, the effects of NaN3 and H2O2 were also studied in electrically stimulated rat hippocampal slices, evaluating the (3)H-Choline efflux, as an index of acetylcholine release. The neurotoxic treatment depressed the neurosecretory function and the mixture of antioxidant drugs, as well as memantine, were able to restore it. The neuronal damage induced by the in vitro protocol adopted in the present work displays peculiarities of neurodegenerative disorders, e.g. Alzheimer disease, underlining the role of mitochondrial failure and oxidative stress, which appear to occur upstream the neurodegenerative process; such protocol could be utilized to test the efficacy of neuroprotective treatments.
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- 2013
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43. Merkel cell carcinomas arising in autoimmune disease affected patients treated with biologic drugs, including anti-TNF
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Pauline Gaboriaud, Marcello Govoni, Roberta Gafà, Rita Selvatici, Fernanda Martini, Françoise Antoine Touzé, John Charles Rotondo, Ilaria Bononi, Valentina Foschi, Mauro Tognon, Giovanni Lanza, Andrea Puozzo, Department of Morphology, Surgery and Experimental Medicine, School of Medicine, Università degli Studi di Ferrara (UniFE), Department of Medical Sciences, School of Medicine, Infectiologie et Santé Publique (UMR ISP), Institut National de la Recherche Agronomique (INRA)-Université de Tours (UT), University of Ferrara, Infectiologie Animale et Santé Publique - IASP (Nouzilly, France), Institut National de la Recherche Agronomique (INRA), and Institut National de la Recherche Agronomique (INRA)-Université de Tours
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0301 basic medicine ,Male ,mélanome ,Cancer Research ,medicine ,MCPyV ,Carcinogenesis ,neoplasms ,carcinome ,Merkel cell polyomavirus ,Arthritis, Rheumatoid ,Economica ,0302 clinical medicine ,cellule de merkel ,malignant epithelial ,Antigens, Viral, Tumor ,Antigens, Viral ,biology ,food and beverages ,Merkel Cell Carcinoma ,Middle Aged ,3. Good health ,medicine.anatomical_structure ,Oncology ,030220 oncology & carcinogenesis ,Immunohistochemistry ,Female ,Antibody ,Merkel cell ,médicament ,polyomavirus ,Socio-culturale ,[SDV.CAN]Life Sciences [q-bio]/Cancer ,Peripheral blood mononuclear cell ,Antibodies ,03 medical and health sciences ,Antigen ,Antigens, Neoplasm ,Humans ,Spondylitis, Ankylosing ,Aged ,Autoimmune disease ,Biological Products ,maladie autoimmune ,Tumor Necrosis Factor-alpha ,Ambientale ,Cancer ,biology.organism_classification ,medicine.disease ,infection ,Carcinoma, Merkel Cell ,Oncology, Cancer Research, Merkel Cell Carcinoma, MCPyV, Merkel cell Virus ,030104 developmental biology ,Immunology ,biology.protein ,Merkel cell Virus - Abstract
Purpose: The purpose of this investigation was to characterize Merkel cell carcinomas (MCC) arisen in patients affected by autoimmune diseases and treated with biologic drugs. Experimental Design: Serum samples from patients with MCC were analyzed for the presence and titer of antibodies against antigens of the oncogenic Merkel cell polyomavirus (MCPyV). IgG antibodies against the viral oncoproteins large T (LT) and small T (ST) antigens and the viral capsid protein-1 were analyzed by indirect ELISA. Viral antigens were recombinant LT/ST and virus-like particles (VLP), respectively. MCPyV DNA sequences were studied using PCR methods in MCC tissues and in peripheral blood mononuclear cells (PBMC). Immunohistochemical (IHC) analyses were carried out in MCC tissues to reveal MCPyV LT oncoprotein. Results: MCPyV DNA sequences identified in MCC tissues showed 100% homology with the European MKL-1 strain. PBMCs from patients tested MCPyV-negative. Viral DNA loads in the three MCC tissues were in the 0.1 to 30 copy/cell range. IgG antibodies against LT/ST were detected in patients 1 and 3, whereas patient 2 did not react to the MCPyV LT/ST antigen. Sera from the three patients with MCC contained IgG antibodies against MCPyV VP1. MCC tissues tested MCPyV LT-antigen–positive in IHC assays, with strong LT expression with diffuse nuclear localization. Normal tissues tested MCPyV LT–negative when employed as control. Conclusions: We investigated three new MCCs in patients affected by rheumatologic diseases treated with biologic drugs, including TNF. A possible cause–effect relationship between pharmacologic immunosuppressive treatment and MCC onset is suggested. Indeed, MCC is associated with MCPyV LT oncoprotein activity. Clin Cancer Res; 23(14); 3929–34. ©2017 AACR.
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- 2017
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44. Transcriptional and epigenetic analyses of the DMD locus reveal novel cisâacting DNA elements that govern muscle dystrophin expression
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Paolo Pigini, Maria Sofia Falzarano, Alessandra Ferlini, Marina Mora, C. Scotton, Pia Bernasconi, H. Osman, Lucia Morandi, Matteo Bovolenta, Lorenzo Maggi, Francesca Gualandi, Giovanni Perini, Samuele Gherardi, Alessandra Recchia, Marcella Neri, Rita Selvatici, Chiara Passarelli, Annarita Armaroli, Gherardi, Samuele, Bovolenta, Matteo, Passarelli, Chiara, Falzarano, Maria Sofia, Pigini, Paolo, Scotton, Chiara, Neri, Marcella, Armaroli, Annarita, Osman, Hana, Selvatici, Rita, Gualandi, Francesca, Recchia, Alessandra, Mora, Marina, Bernasconi, Pia, Maggi, Lorenzo, Morandi, Lucia, Ferlini, Alessandra, and Perini, Giovanni
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Adult ,0301 basic medicine ,musculoskeletal diseases ,congenital, hereditary, and neonatal diseases and abnormalities ,Adolescent ,Biophysics ,Locus (genetics) ,Regulatory Sequences, Nucleic Acid ,Biology ,Gene mutation ,Biochemistry ,Epigenesis, Genetic ,NO ,Dystrophin ,Mice ,Young Adult ,03 medical and health sciences ,Duchenne Muscular Dystrophy (DMD) ,Transcriptional regulation ,Structural Biology ,Utrophin ,Becker Muscular Dystrophy (BMD) ,Genetics ,Animals ,Humans ,Chromosome Conformation Capture (3C) ,RNA pol II pausing ,Molecular Biology ,Child ,Muscle, Skeletal ,Gene ,Cells, Cultured ,Regulation of gene expression ,Chromatin ,Muscular Dystrophy, Duchenne ,030104 developmental biology ,Gene Expression Regulation ,Biophysic ,Child, Preschool ,Mutation ,biology.protein ,HeLa Cells - Abstract
The dystrophin gene (DMD) is the largest gene in the human genome, mapping on the Xp21 chromosome locus. It spans 2.2 Mb and accounts for approximately 0,1% of the entire human genome. Mutations in this gene cause Duchenne and Becker Muscular Dystrophy, X-linked Dilated Cardiomyopathy, and other milder muscle phenotypes. Beside the remarkable number of reports describing dystrophin gene expression and the pathogenic consequences of the gene mutations in dystrophinopathies, the full scenario of the DMD transcription dynamics remains however, poorly understood. Considering that the full transcription of the DMD gene requires about 16 h, we have investigated the activity of RNA Polymerase II along the entire DMD locus within the context of specific chromatin modifications using a variety of chromatin-based techniques. Our results unveil a surprisingly powerful processivity of the RNA polymerase II along the entire 2.2 Mb of the DMD locus with just one site of pausing around intron 52. We also discovered epigenetic marks highlighting the existence of four novel cisâDNA elements, two of which, located within intron 34 and exon 45, appear to govern the architecture of the DMD chromatin with implications on the expression levels of the muscle dystrophin mRNA. Overall, our findings provide a global view on how the entire DMD locus is dynamically transcribed by the RNA pol II and shed light on the mechanisms involved in dystrophin gene expression control, which can positively impact on the optimization of the novel ongoing therapeutic strategies for dystrophinopathies.
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- 2017
45. Effects of Synthetic Peptides on the Inflammatory Response and their Therapeutic Potential
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Rita, Selvatici, Selvatici, Rita, Anna, Siniscalchi, Siniscalchi, Anna, Susanna, Spisani, and Spisani, Susanna
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lysozyme release ,Chemotaxis ,formylpeptide receptor ,inflammation ,neuroprotection ,protein kinase C inhibition ,superoxide anion ,synthetic peptides ,Neutrophils ,Anti-Inflammatory Agents ,Peptide ,Pharmacology ,Inhibitory postsynaptic potential ,law.invention ,chemistry.chemical_compound ,Superoxides ,law ,Drug Discovery ,Animals ,Humans ,Peptide sequence ,Protein Kinase C ,Protein kinase C ,chemistry.chemical_classification ,Analgesics ,Superoxide ,Proteins ,General Medicine ,Receptors, Formyl Peptide ,In vitro ,N-Formylmethionine Leucyl-Phenylalanine ,chemistry ,Biochemistry ,Recombinant DNA ,Peptides ,Protein Binding - Abstract
Recently, interest in small peptide molecules as potential drug candidates has revived. In this review, two series of synthetic peptides and their selective effects on the inflammatory response have been described, focusing on the intracellular pathways involved and on their therapeutic potential. A series of F(D)LF(D)LF analogs has been synthesized, including either N- t-Boc or different N-ureido substituents. The free acid derivatives as they are good candidates as antiinflammatory drugs are able to antagonize the multiple neutrophil functions evoked by N-formyl-L-methionyl-L-leucyl-Lphenylalanine (fMLF), i.e. chemotaxis, superoxide anion production and lysozyme release. Their methyl-ester derivatives are ineffective. The second series of peptides derives from the endogenous protein kinase C (PKC) inhibitor PKI55, a 55-amino acid protein, whose synthesis is induced by PKC activation, so that a feedback loop of inhibition is established. In vitro experiments showed that PKI55 inhibits recombinant PKC isoforms α, β1, β2, γ, δ, ζ, ; to identify the minimal amino acid sequence of PKI55 protein maintaining the inhibitory effects on PKC, peptides derived from both C- and N-terminal sequences have been synthesized. The N-terminal peptides 5 (MLYKLHDVCRQLWFSC), 8 (CRQLWFSC) and 9 (CRQLW), that in human neutrophils retain the inhibitory activity on PKC, decrease the chemotaxis, and, in mice, display anti-inflammatory and analgesic action, after both central and peripheral administration of very low doses. Furthermore, the peptide 5 shows neuroprotective activity in a model of cerebral ischemia in vitro, favouring the recovery of synaptic function. These findings suggest interesting possible therapeutic applications for these peptides.
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- 2013
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46. Tracing Males From Different Continents by Genotyping JC Polyomavirus in DNA From Semen Samples
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John Charles, Rotondo, Tommaso, Candian, Rita, Selvatici, Elisa, Mazzoni, Gloria, Bonaccorsi, Pantaleo, Greco, Mauro, Tognon, and Fernanda, Martini
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Adult ,Male ,Internationality ,Base Sequence ,Genotype ,Genotyping Techniques ,Semen ,DNA, Viral ,Humans ,JC Virus ,Sequence Alignment - Abstract
The human JC polyomavirus (JCPyV) is an ubiquitous viral agent infecting approximately 60% of humans. Recently, JCPyV sequences have been detected in semen samples. The aim of this investigation was to test whether semen JCPyV genotyping can be employed to trace the origin continent of males. Semen DNA samples (n = 170) from males of different Continents were investigated by PCR for the polymorphic JCPyV viral capsid protein 1 (VP1) sequences, followed by DNA sequencing. JCPyV sequences were detected with an overall prevalence of 27.6% (47/170). DNA sequencing revealed that European males carried JCPyV types 1A (71.4%), 4 (11.4%), 2B (2.9%), 2D1 (2.9%), and 3A (2.9%). Asians JCPyV type 2D1 (66.7%) and Africans JCPyV types 3A (33.3%) and 1A (33.3%). In 10.6% of males, two different JCPyV genotypes were detected, suggesting that the second JCPyV genotype was acquired in the destination country. This study indicates that the majority of semen samples found to be JCPyV-positive, were infected with the JCPyV genotype found in the geographic area of male origin. Therefore, semen JCPyV genotyping could be employed to trace the origin continent of males. Our findings could be applied to forensic investigations, in case of for instance sexual crimes. Indeed, JCPyV genotyping should enable investigators to make additional detailed profiling of the offender. J. Cell. Physiol. 232: 982-985, 2017. © 2016 Wiley Periodicals, Inc.
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- 2016
47. A Family with γ-Thalassemia and High Hb A2 Levels
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Rita Selvatici, Maria Pia Cappabianca, Alessandra Ferlini, Marina Taddei Masieri, Paola Rimessi, Anna Venturoli, Bernadetta Dolcini, Stefania Bigoni, Anna Ravani, Giulia Parmeggiani, and Francesca Gualandi
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Proband ,Adult ,Male ,congenital, hereditary, and neonatal diseases and abnormalities ,medicine.medical_specialty ,Thalassemia ,Clinical Biochemistry ,Gene Dosage ,Mean corpuscular hemoglobin ,Biology ,NO ,03 medical and health sciences ,globin gene deletion ,0302 clinical medicine ,Intergenic region ,hemic and lymphatic diseases ,Gene cluster ,medicine ,Humans ,gamma-Globins ,Hemoglobin A2 ,Mean corpuscular volume ,Gene ,Genetics (clinical) ,Sequence Deletion ,g-Thalassemia (g-thal), genetic counseling, globin gene deletion, high Hb A2 level ,Genetics ,genetic counseling ,medicine.diagnostic_test ,high Hb A2 level ,Biochemistry (medical) ,Hematology ,medicine.disease ,Pedigree ,Gene Expression Regulation ,030220 oncology & carcinogenesis ,Medical genetics ,Female ,g-Thalassemia (g-thal) ,030215 immunology - Abstract
We describe a family carrying a γ-globin gene deletion associated with an increase of Hb A2 level beyond the normal range. The family included the proband, his sister and their father, all with increased Hb A2 and normal Hb F levels. The proband and his sister showed borderline values of mean corpuscular volume (MCV) and reduced values of mean corpuscular hemoglobin (Hb) (MCH). The proband was referred to our Medical Genetics Service for preconception counseling together with his partner, a typical β-thalassemia (β-thal) carrier. The results were negative for the most frequent α-thalassemia (α-thal) mutations, and had no significant sequence variations of the coding sequences and promoter of the β- and δ-globin genes. Quantitative analysis by multiplex ligation-dependent probe amplification (MPLA) of the β-globin gene cluster detected a heterozygous deletion, ranging between 2.1 and 4.7 kb, in the proband, his sister and the father. The deletion involved the (G)γ gene and (G)γ-(A)γ intergenic region, whereas the 3' region of the (A)γ gene was preserved. A subsequent gap-polymerase chain reaction (gap-PCR) showed that a hybrid (GA)γ fusion gene was present. The deletion segregated with the elevation of Hb A2. The MLPA analysis of the β-globin gene cluster in 150 control alleles excluded a common polymorphism. Despite stronger evidence being needed, the described family suggests a possible role of this γ-globin gene deletion in contributing to Hb A2 elevation, possibly by altering the transcription regulation of the cluster. We propose γ-globin gene dosage analysis to be performed in patients with unexplained elevated Hb A2 levels.
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- 2016
48. Methylenetetrahydrofolate reductase gene promoter hypermethylation in semen samples of infertile couples correlates with recurrent spontaneous abortion
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John Charles Rotondo, Silvia Bosi, Rita Selvatici, Mauro Tognon, Roberto Marci, Alfredo Patella, M. De Mattei, E. Bazzan, M. Di Domenico, and Fernanda Martini
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Adult ,Male ,Infertility ,Abortion, Habitual ,medicine.medical_specialty ,Population ,Semen ,Semen analysis ,Male infertility ,Andrology ,medicine ,Humans ,Promoter Regions, Genetic ,education ,Infertility, Male ,Methylenetetrahydrofolate Reductase (NADPH2) ,Retrospective Studies ,Gynecology ,education.field_of_study ,biology ,medicine.diagnostic_test ,Rehabilitation ,Obstetrics and Gynecology ,DNA Methylation ,medicine.disease ,digestive system diseases ,Semen Analysis ,Reproductive Medicine ,CpG site ,Methylenetetrahydrofolate reductase ,DNA methylation ,biology.protein - Abstract
STUDY QUESTION Is the methylation status of the methylenetetrahydrofolate reductase (MTHFR) promoter region in semen samples associated with 'recurrent spontaneous abortion' (RSA)? SUMMARY ANSWER MTHFR promoter hypermethylation is more frequent in semen samples from RSA couples than in semen samples from infertile couples with no history of RSA (NRSA) and affects the whole sperm population significantly more often. WHAT IS KNOWN ALREADY Modifications to the MTHFR gene such as polymorphisms and promoter methylations are associated with male infertility. STUDY DESIGN, SIZE AND DURATION Retrospective cohort study of semen samples from 20 RSA couples, 147 NRSA couples and 20 fertile men between 2011 and 2012. MATERIALS, SETTING AND METHODS DNA from the semen samples of RSA, NRSA and fertile men were analyzed by methylation-specific PCR amplification using primers which anneal to the methylated or unmethylated cytosine-phosphodiester bond guanine (CpG) islands within the promoter region of MTHFR. The specificity of the PCR products was assessed by DNA sequencing. MAIN RESULTS AND THE ROLE OF CHANCE The methylated MTHFR epigenotype (including samples where it co-existed with unmethylated MTHFR epigenotypes) was detected in 75% of RSA men, 54% of NRSA men and 15% of fertile men. MTHFR methylation was observed in the whole sperm population in semen samples from 55% of RSA men compared with 8% in NRSA men (P < 0.05) and 0% in fertile men (P < 0.05). DNA sequencing analysis was fully concordant with the PCR results and revealed that when MTHFR methylation occurred, CpG islands within the promoter region were 100% methylated (hypermethylation of MTHFR promoter). LIMITATIONS, REASONS FOR CAUTION The relatively small sample size of RSA infertile couples. WIDER IMPLICATIONS OF THE FINDINGS The hypermethylation of the MTHFR gene promoter should be taken into consideration as a novel putative risk factor in RSA etiology. STUDY FUNDING/COMPETING INTEREST(S) Our institution has received an FAR research grant from the University of Ferrara, Ferrara, Italy. No competing interests declared.
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- 2012
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49. Whole genome sequencing in neuromuscular diseases: the UNIFE experience within the neuromics project
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Sergio Fini, C. Scotton, Francesca Gualandi, Alessandra Ferlini, Maria Sofia Falzarano, Rita Selvatici, Annarita Armaroli, Marcella Neri, and Rachele Rossi
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Whole genome sequencing ,Neurology ,Pediatrics, Perinatology and Child Health ,Neurology (clinical) ,Computational biology ,Biology ,Bioinformatics ,Genetics (clinical) - Published
- 2017
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50. NEXT GENERATION SEQUENCING AND EXPERIMENTAL MYOLOGY
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Rita Selvatici, Mingyan Fang, Maria Sofia Falzarano, l. Zhiyuan, Marcella Neri, Alessandra Ferlini, Rachele Rossi, Silvio Bicciato, Andrea Grilli, Francesca Gualandi, and H. Osman
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Neurology ,Pediatrics, Perinatology and Child Health ,Myology ,Neurology (clinical) ,Computational biology ,Biology ,Genetics (clinical) ,DNA sequencing - Published
- 2018
- Full Text
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