47 results on '"Rodriguez-Andres J"'
Search Results
2. Synthetic photoplethysmography (PPG) of the radial artery through parallelized Monte Carlo and its correlation to body mass index (BMI)
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Boonya-ananta, Tananant, Rodriguez, Andres J., Ajmal, Ajmal, Du Le, Vinh Nguyen, Hansen, Anders K., Hutcheson, Joshua D., and Ramella-Roman, Jessica C.
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- 2021
- Full Text
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3. Dry-spun carbon nanotube ultrafiltration membranes tailored by anti-viral metal oxide coatings for human coronavirus 229E capture in water
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Rashed, AO, Huynh, C, Merenda, A, Rodriguez-Andres, J, Kong, L, Kondo, T, Razal, JM, Dumée, LF, Rashed, AO, Huynh, C, Merenda, A, Rodriguez-Andres, J, Kong, L, Kondo, T, Razal, JM, and Dumée, LF
- Abstract
Although waterborne virus removal may be achieved using separation membrane technologies, such technologies remain largely inefficient at generating virus-free effluents due to the lack of anti-viral reactivity of conventional membrane materials required to deactivating viruses. Here, a stepwise approach towards simultaneous filtration and disinfection of Human Coronavirus 229E (HCoV-229E) in water effluents, is proposed by engineering dry-spun ultrafiltration carbon nanotube (CNT) membranes, coated with anti-viral SnO2 thin films via atomic layer deposition. The thickness and pore size of the engineered CNT membranes were fine-tuned by varying spinnable CNT sheets and their relative orientations on carbon nanofibre (CNF) porous supports to reach thicknesses less than 1 µm and pore size around 28 nm. The nanoscale SnO2 coatings were found to further reduce the pore size down to ∼21 nm and provide more functional groups on the membrane surface to capture the viruses via size exclusion and electrostatic attractions. The synthesized CNT and SnO2 coated CNT membranes were shown to attain a viral removal efficiency above 6.7 log10 against HCoV-229E virus with fast water permeance up to ∼4 × 103 and 3.5 × 103 L.m−2.h−1.bar−1, respectively. Such high performance was achieved by increasing the dry-spun CNT sheets up to 60 layers, orienting successive 30 CNT layers at 45°, and coating 40 nm SnO2 on the synthesized membranes. The current study provides an efficient scalable fabrication scheme to engineer flexible ultrafiltration CNT-based membranes for cost-effective filtration and inactivation of waterborne viruses to outperform the state-of-the-art ultrafiltration membranes.
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- 2023
4. The influence of obesity on the skin's optical properties (Conference Presentation)
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Ramella-Roman, Jessica C., primary, Palacios, Cristina, additional, Ajmal, Ajmal, additional, Boonya-Ananta, Tananant, additional, and Rodriguez, Andres J., additional
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- 2023
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5. Tissue mimicking material selection and finger phantom design for pulse oximetry (Conference Presentation)
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Rodriguez, Andres J., primary, Vasudevan, Sandhya, additional, Farahmand, Masoud, additional, Weininger, Sandy, additional, Vogt, William C., additional, Scully, Christopher, additional, Ramella-Roman, Jessica C., additional, and Pfefer, T. Joshua, additional
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- 2023
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6. A wMel Wolbachia variant in Aedes aegypti from field-collected Drosophila melanogaster with increased phenotypic stability under heat stress
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Gu, X, Ross, PA, Rodriguez-Andres, J, Robinson, KL, Yang, Q, Lau, M-J, Hoffmann, AA, Gu, X, Ross, PA, Rodriguez-Andres, J, Robinson, KL, Yang, Q, Lau, M-J, and Hoffmann, AA
- Abstract
Mosquito-borne diseases remain a major cause of morbidity and mortality. Population replacement strategies involving the wMel strain of Wolbachia are being used widely to control mosquito-borne diseases. However, these strategies may be influenced by temperature because wMel is vulnerable to heat. wMel infections in Drosophila melanogaster are genetically diverse, but few transinfections of wMel variants have been generated in Aedes aegypti. Here, we successfully transferred a wMel variant (termed wMelM) originating from a field-collected D. melanogaster into Ae. aegypti. The new wMelM variant (clade I) is genetically distinct from the original wMel transinfection (clade III), and there are no genomic differences between wMelM in its original and transinfected host. We compared wMelM with wMel in its effects on host fitness, temperature tolerance, Wolbachia density, vector competence, cytoplasmic incompatibility and maternal transmission under heat stress in a controlled background. wMelM showed a higher heat tolerance than wMel, likely due to higher overall densities within the mosquito. Both wMel variants had minimal host fitness costs, complete cytoplasmic incompatibility and maternal transmission, and dengue virus blocking under laboratory conditions. Our results highlight phenotypic differences between Wolbachia variants and wMelM shows potential as an alternative strain in areas with strong seasonal temperature fluctuations.
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- 2022
7. In-vivo human study of skin optical properties in individuals with obesity
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Rodriguez, Andres J., Alzamora, Michael, Ajmal, Ajmal, Boonya-Ananta, Tananant, Vinh Nguyen, Du Le, Fredriksson, Ingemar, Strömberg, Tomas, Ramella-Roman, Jessica C., Rodriguez, Andres J., Alzamora, Michael, Ajmal, Ajmal, Boonya-Ananta, Tananant, Vinh Nguyen, Du Le, Fredriksson, Ingemar, Strömberg, Tomas, and Ramella-Roman, Jessica C.
- Abstract
Obesity is a widespread chronic illness which affects over 40% of the US adult population and its world-wide prevalence has increased over the years impacting both low and high-income countries. Obesity has been linked to higher risk of non-communicable diseases such as cardiovascular disease, type-2 diabetes, dyslipidemia, hypertension, among others. Currently the mostly prescribed regimes to combat chronic illness associated with obesity are efforts to change diet, behavior, and physical activity. Wearable devices have the potential of helping users reduce their obesity levels as these devices can easily acquire and communicate biometric data with users and clinicians. However, these technologies depend on optical sensors that are sensitive to molecular skin composition. We hypothesize that individuals with high BMI levels will present changes in skin optical properties when compared to their non-obese counterparts. Our objective is to capture skin optical properties at the wrist among a diverse cohort using a commercial optical system for research use. To meet an appropriate power, the human study, composed of males and females, is conducted with 100 adult participants. Statistical methods, including linear regression and t-tests, are used to determine interactions between measured data and participant demographics. We believe these results can improve design of optical wearables for the obese., Funding Agencies|National Science Foundation Engineering Research Center for Precise Advanced Technologies and Health Systems for Underserved Populations (PATHS-UP) [1648451]
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- 2022
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8. Skin optical properties in the obese and their relation to body mass index: a review
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Rodriguez, Andres J., primary, Boonya-Ananta, Mel Tananant, additional, Gonzalez, Mariacarla, additional, Le, Vinh Nguyen Du, additional, Fine, Jesse, additional, Palacios, Cristina, additional, McShane, Mike J., additional, Coté, Gerard L., additional, and Ramella-Roman, Jessica C., additional
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- 2022
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9. In-vivo human study of skin optical properties in individuals with obesity
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Rodriguez, Andres J., primary, Alzamora, Michael, additional, Ajmal, Ajmal, additional, Boonya-Ananta, Tananant, additional, Du Le, Vinh Nguyen, additional, Fredriksson, Ingemar, additional, Strömberg, Tomas, additional, and Ramella-Roman, Jessica C., additional
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- 2022
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10. Hybrid polymer/ionic liquid electrospun membranes with tunable surface charge for virus capture in aqueous environments
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Merenda, A, Bortolassi, ACC, Rodriguez-Andres, J, Al-Attabi, R, Schütz, JA, Kujawski, W, Shon, HK, and Dumée, LF
- Subjects
0905 Civil Engineering, 0907 Environmental Engineering - Abstract
Although electrospun-based membranes may be engineered as efficient platforms for the capture of biomolecules in aqueous environments, the capability of such membranes to selectively capture viruses and proteins is often limited due to poor and constrained surface affinity for molecular bonding. In order to generate more efficient electrospun-based membranes, fine-tuning Van der Waals and ionic interactions is required to control chemical affinities with such contaminants and support advanced remediation solutions. Here, diallydimethylammonium chloride and poly(acrylonitrile) electrospun nanofibres were developed to enhance the adsorption of specific contaminant molecules compared to equivalently shaped pristine poly(acrylonitrile) nanofibre membranes. The results showed that the incorporation of the ionic liquid improved contact with water by forming super-hydrophilic nanofibres with narrow diameters and smaller pore size distributions, while also significantly changing the surface charge of the material and shifting the isoelectric point of the surface from 3 to 4.4. The specific surface area of the membranes was also increased by up to 4 times upon ionic liquid loading, which was found to support efficient coronavirus capture and filtration efficiency. This new strategy represents a promising way to control surface properties of virus filtration membranes towards efficient and targeted remediation solutions.
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- 2021
11. Synthetic photoplethysmographic waveform at the radial artery
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Boonya-Ananta, Tananant, primary, Rodriguez, Andres J., additional, Ajmal, Ajmal, additional, Le, Du, additional, Hutcheson, Joshua D., additional, and Ramella-Roman, Jessica C., additional
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- 2021
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12. Investigation of optical heart rate sensors in wearables and the influence of skin tone and obesity on photoplethysmography (PPG) signal
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Ajmal, Ajmal, primary, Boonya-Ananta, Tananant, additional, Rodriguez, Andres J., additional, Nguyen Du Le, Vinh, additional, and Ramella-Roman, Jessica C., additional
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- 2021
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13. Synthetic Photoplethysmography (PPG) of the radial artery through parallelized Monte Carlo and its correlation to Body Mass Index (BMI)
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Boonya-ananta, Tananant, primary, Rodriguez, Andres J., additional, Ajmal, Ajmal, additional, Du Le, Vinh Nguyen, additional, Hansen, Anders K., additional, Hutcheson, Joshua D., additional, and Ramella-Roman, Jessica C., additional
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- 2020
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14. Porcine Small Intestinal Submucosa Mitral Valve Material Responses Support Acute Somatic Growth
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Gonzalez, Brittany A., primary, Pour Issa, Elnaz, additional, Mankame, Omkar V., additional, Bustillos, Jenniffer, additional, Cuellar, Antonio, additional, Rodriguez, Andres J., additional, Scholl, Frank, additional, Bibevski, Steven, additional, Hernandez, Lazaro, additional, Brehier, Vincent, additional, Casares, Mike, additional, Rivas-Wagner, Krishna, additional, Morales, Pablo, additional, Lopez, Jesus, additional, Wagner, Joseph, additional, Bibevski, Jennifer, additional, Agarwal, Arvind, additional, George, Florence, additional, and Ramaswamy, Sharan, additional
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- 2020
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15. Tenth scientific biennial meeting of the australasian virology society - AVS10 2019
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Helbig, KJ, Bull, RA ; https://orcid.org/0000-0002-9844-3744, Ambrose, R, Beard, MR, Blanchard, H, Böcking, T ; https://orcid.org/0000-0003-1165-3122, Chua, B, Colmant, AMG, Crosse, KM, Purcell, DFJ, Fraser, J, Hayward, JA, Hamilton, ST, Husain, M, MacDiarmid, R, MacKenzie, JM, Moseley, GW, Nguyen, THO, Quiñones-Mateu, ME, Robinson, K, Rodrigo, C ; https://orcid.org/0000-0003-2189-9177, Rodriguez-Andres, J, Rudd, PA, Werno, A, White, P ; https://orcid.org/0000-0002-6046-9631, Young, P, Speck, P, Hibma, M, Drummer, HE, Tachedjian, G, Helbig, KJ, Bull, RA ; https://orcid.org/0000-0002-9844-3744, Ambrose, R, Beard, MR, Blanchard, H, Böcking, T ; https://orcid.org/0000-0003-1165-3122, Chua, B, Colmant, AMG, Crosse, KM, Purcell, DFJ, Fraser, J, Hayward, JA, Hamilton, ST, Husain, M, MacDiarmid, R, MacKenzie, JM, Moseley, GW, Nguyen, THO, Quiñones-Mateu, ME, Robinson, K, Rodrigo, C ; https://orcid.org/0000-0003-2189-9177, Rodriguez-Andres, J, Rudd, PA, Werno, A, White, P ; https://orcid.org/0000-0002-6046-9631, Young, P, Speck, P, Hibma, M, Drummer, HE, and Tachedjian, G
- Abstract
The Australasian Virology Society (AVS) aims to promote, support and advocate for the discipline of virology in the Australasian region. The society was incorporated in 2011 after 10 years operating as the Australian Virology Group (AVG) founded in 2001, coinciding with the inaugural biennial scientific meeting. AVS conferences aim to provide a forum for the dissemination of all aspects of virology, foster collaboration, and encourage participation by students and post-doctoral researchers. The tenth Australasian Virology Society (AVS10) scientific meeting was held on 2-5 December 2019 in Queenstown, New Zealand. This report highlights the latest research presented at the meeting, which included cutting-edge virology presented by our international plenary speakers Ana Fernandez-Sesma and Benjamin tenOever, and keynote Richard Kuhn. AVS10 honoured female pioneers in Australian virology, Lorena Brown and Barbara Coulson. We report outcomes from the AVS10 career development session on "Successfully transitioning from post-doc to lab head", winners of best presentation awards, and the AVS gender equity policy, initiated in 2013. Plans for the 2021 meeting are underway which will celebrate the 20th anniversary of AVS where it all began, in Fraser Island, Queensland, Australia.
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- 2020
16. Superinfection Exclusion in Mosquitoes and Its Potential as an Arbovirus Control Strategy
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Laureti, M, Paradkar, PN, Fazakerley, JK, Rodriguez-Andres, J, Laureti, M, Paradkar, PN, Fazakerley, JK, and Rodriguez-Andres, J
- Abstract
The continuing emergence of arbovirus disease outbreaks around the world, despite the use of vector control strategies, warrants the development of new strategies to reduce arbovirus transmission. Superinfection exclusion, a phenomenon whereby a primary virus infection prevents the replication of a second closely related virus, has potential to control arbovirus disease emergence and outbreaks. This phenomenon has been observed for many years in plants, insects and mammalian cells. In this review, we discuss the significance of identifying novel vector control strategies, summarize studies exploring arbovirus superinfection exclusion and consider the potential for this phenomenon to be the basis for novel arbovirus control strategies.
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- 2020
17. Experimental integration of a Spatial Frequency Domain Spectroscopy and Pulse Cam system for quantifying changes in skin optical properties and vasculature among individuals with obesity
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Rodriguez, Andres J., Boonya-ananta, Tananant, Maity, Akash Kumar, Veeraraghavan, Ashok, Saager, Rolf, Ramella-Roman, Jessica C., Rodriguez, Andres J., Boonya-ananta, Tananant, Maity, Akash Kumar, Veeraraghavan, Ashok, Saager, Rolf, and Ramella-Roman, Jessica C.
- Abstract
Obesity leads to a higher risk of diabetes and cardiovascular diseases. Wearable devices can be used to manage and promote the healthy lifestyle among the obese by measuring heart rate, heart rate variability, perfusion, and pressure pulse-wave velocities. While operational challenges are common in wearable devices using electrical or thermal sensors, those with optical sensors are more robust. Current optical sensors rely on fluctuations in light intensity due to spatio-temporal variations in tissue absorption. The thick layer of adipose tissue in high body mass index (BMI) individuals strongly scatters light, reducing the optical contrast and signal to noise ratio. Moreover, higher BMI alters chemical concentrations- like water, oxygenation, and blood volume in the dermal layer- and thus the optical properties (OP). Although OP of the skin exists in literature, no study has strictly recorded the effect and magnitude of a higher BMI on them. In this study, we combine the spatial frequency domain spectroscopy (SFDS) with a multi-sensor blood flow imaging device (PulseCam) to characterize the OPs and monitor the vascularization in the obese. The effects of skin morphology and physiology on the performance of optical sensor are preliminarily investigated., Funding Agencies|National Science Foundation Engineering Research Center for Precise Advanced Technologies and Health Systems for Underserved Populations (PATHS-UP) [1648451]
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- 2020
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18. Modeling of a photoplethysmographic (PPG) waveform through monte carlo as a method of deriving blood pressure in individuals with obesity.
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Ibey, Bennett L., Linz, Norbert, Boonya-Ananta, Tananant, Rodriguez, Andres J., Hansen, Anders K., Hutcheson, Joshua D., Ramella-Roman, Jessica C., Ibey, Bennett L., Linz, Norbert, Boonya-Ananta, Tananant, Rodriguez, Andres J., Hansen, Anders K., Hutcheson, Joshua D., and Ramella-Roman, Jessica C.
- Abstract
Systolic and diastolic blood pressure values can be used as an indicator of an individual's risk for cardiovascular disease. The common practice of blood pressure (BP) measurement using a cuff-based system provides a snapshot of blood pressure at a single instance in time and can be inconvenient and intrusive. The development of optical methods to determine blood pressure could provide continuous monitoring of blood pressure through techniques such as pulse transit time (PTT) or pulse arrival time (PAT) when used with echocardiogram. Cuff based BP devices are known to have variation and inaccuracies when applied to larger arm sizes as seen in individuals with obesity but little is known of the influence of obesity in the PPG/PTT and PAT signals. We propose that accurate waveform replication is required for the derivation of blood pressure applied to individuals with obesity. Here we use the Monte Carlo framework to develop the PPG waveform as a means to derive blood pressure through cuff less techniques. The development of a simulated waveform incorporates realistic changes in the artery related to its biomechanical properties as a pressure wave is propagated through the vessel. It is shown that a change in vessel pressure and geometry directly affects the captured optical signal. The system can account for variations in body-mass index to compensate for geometrical changes in adipose tissue layer and changes in optical properties.
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- 2020
19. Experimental integration of a spatial frequency domain spectroscopy and pulse cam system for quantifying changes in skin optical properties and vasculature among individuals with obesity
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Rodriguez, Andres J., primary, Boonya-ananta, Tananant, additional, Maity, Akash Kumar, additional, Veeraraghavan, Ashok, additional, Saager, Rolf B., additional, and Ramella-Roman, Jessica C., additional
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- 2020
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20. Modeling of a photoplethysmographic (PPG) waveform through monte carlo as a method of deriving blood pressure in individuals with obesity.
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Boonya-ananta, Tananant, primary, Rodriguez, Andres J., additional, Hansen, Anders K., additional, Hutcheson, Joshua D., additional, and Ramella-Roman, Jessica C., additional
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- 2020
- Full Text
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21. Monte Carlo Modeling of a Photoplethysmographic (PPG) in Individuals with Obesity
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Boonya-ananta, Tananant, primary, Rodriguez, Andres J., additional, Hansen, Anders K., additional, Hutcheson, Joshua D., additional, and Ramella-Roman, Jessica C., additional
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- 2020
- Full Text
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22. In-vivo human study of skin optical properties in individuals with obesity
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Coté, Gerard L., Rodriguez, Andres J., Alzamora, Michael, Ajmal, Ajmal, Boonya-Ananta, Tananant, Du Le, Vinh Nguyen, Fredriksson, Ingemar, Strömberg, Tomas, and Ramella-Roman, Jessica C.
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- 2022
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23. Monte Carlo analysis of optical heart rate sensors in commercial wearables: the effect of skin tone and obesity on the photoplethysmography (PPG) signal
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Ajmal, Boonya-Ananta, Tananant, Rodriguez, Andres J., Du Le, V. N., and Ramella-Roman, Jessica C.
- Abstract
Commercially available wearable devices have been used for fitness and health management and their demand has increased over the last ten years. These “general wellness” and heart-rate monitoring devices have been cleared by the Food and Drug Administration for over-the-counter use, yet anecdotal and more systematic reports seem to indicate that their error is higher when used by individuals with elevated skin tone and high body mass index (BMI). In this work, we used Monte Carlo modeling of a photoplethysmography (PPG) signal to study the theoretical limits of three different wearable devices (Apple Watch series 5, Fitbit Versa 2 and Polar M600) when used by individuals with a BMI range of 20 to 45 and a Fitzpatrick skin scale 1 to 6. Our work shows that increased BMI and skin tone can induce a relative loss of signal of up to 61.2% in Fitbit versa 2, 32% in Apple S5 and 32.9% in Polar M600 when considering the closest source-detector pair configuration in these devices.
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- 2021
24. Flavivirus Receptors: Diversity, Identity, and Cell Entry
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Laureti, M, Narayanan, D, Rodriguez-Andres, J, Fazakerley, JK, Kedzierski, L, Laureti, M, Narayanan, D, Rodriguez-Andres, J, Fazakerley, JK, and Kedzierski, L
- Abstract
Flaviviruses are emerging and re-emerging arthropod-borne pathogens responsible for significant mortality and morbidity worldwide. The genus comprises more than seventy small, positive-sense, single-stranded RNA viruses, which are responsible for a spectrum of human and animal diseases ranging in symptoms from mild, influenza-like infection to fatal encephalitis and haemorrhagic fever. Despite genomic and structural similarities across the genus, infections by different flaviviruses result in disparate clinical presentations. This review focusses on two haemorrhagic flaviviruses, dengue virus and yellow fever virus, and two neurotropic flaviviruses, Japanese encephalitis virus and Zika virus. We review current knowledge on host-pathogen interactions, virus entry strategies and tropism.
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- 2018
25. Cullin4 Is Pro-Viral during West Nile Virus Infection of Culex Mosquitoes
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Randall, G, Paradkar, PN, Duchemin, J-B, Rodriguez-Andres, J, Trinidad, L, Walker, PJ, Randall, G, Paradkar, PN, Duchemin, J-B, Rodriguez-Andres, J, Trinidad, L, and Walker, PJ
- Abstract
Although mosquitoes serve as vectors of many pathogens of public health importance, their response to viral infection is poorly understood. It also remains to be investigated whether viruses deploy some mechanism to be able to overcome this immune response. Here, we have used an RNA-Seq approach to identify differentially regulated genes in Culex quinquefasciatus cells following West Nile virus (WNV) infection, identifying 265 transcripts from various cellular pathways that were either upregulated or downregulated. Ubiquitin-proteasomal pathway genes, comprising 12% of total differentially regulated genes, were selected for further validation by real time RT-qPCR and functional analysis. It was found that treatment of infected cells with proteasomal inhibitor, MG-132, decreased WNV titers, indicating importance of this pathway during infection process. In infection models, the Culex ortholog of mammalian Cul4A/B (cullin RING ubiquitin ligase) was found to be upregulated in vitro as well as in vivo, especially in midguts of mosquitoes. Gene knockdown using dsRNA and overexpression studies indicated that Culex Cul4 acts as a pro-viral protein by degradation of CxSTAT via ubiquitin-proteasomal pathway. We also show that gene knockdown of Culex Cul4 leads to activation of the Jak-STAT pathway in mosquitoes leading to decrease viral replication in the body as well as saliva. Our results suggest a novel mechanism adopted by WNV to overcome mosquito immune response and increase viral replication.
- Published
- 2015
26. Wongabel Rhabdovirus Accessory Protein U3 Targets the SWI/SNF Chromatin Remodeling Complex
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Lyles, DS, Joubert, DA, Rodriguez-Andres, J, Monaghan, P, Cummins, M, McKinstry, WJ, Paradkar, PN, Moseley, GW, Walker, PJ, Lyles, DS, Joubert, DA, Rodriguez-Andres, J, Monaghan, P, Cummins, M, McKinstry, WJ, Paradkar, PN, Moseley, GW, and Walker, PJ
- Abstract
UNLABELLED: Wongabel virus (WONV) is an arthropod-borne rhabdovirus that infects birds. It is one of the growing array of rhabdoviruses with complex genomes that encode multiple accessory proteins of unknown function. In addition to the five canonical rhabdovirus structural protein genes (N, P, M, G, and L), the 13.2-kb negative-sense single-stranded RNA (ssRNA) WONV genome contains five uncharacterized accessory genes, one overlapping the N gene (Nx or U4), three located between the P and M genes (U1 to U3), and a fifth one overlapping the G gene (Gx or U5). Here we show that WONV U3 is expressed during infection in insect and mammalian cells and is required for efficient viral replication. A yeast two-hybrid screen against a mosquito cell cDNA library identified that WONV U3 interacts with the 83-amino-acid (aa) C-terminal domain of SNF5, a component of the SWI/SNF chromatin remodeling complex. The interaction was confirmed by affinity chromatography, and nuclear colocalization was established by confocal microscopy. Gene expression studies showed that SNF5 transcripts are upregulated during infection of mosquito cells with WONV, as well as West Nile virus (Flaviviridae) and bovine ephemeral fever virus (Rhabdoviridae), and that SNF5 knockdown results in increased WONV replication. WONV U3 also inhibits SNF5-regulated expression of the cytokine gene CSF1. The data suggest that WONV U3 targets the SWI/SNF complex to block the host response to infection. IMPORTANCE: The rhabdoviruses comprise a large family of RNA viruses infecting plants, vertebrates, and invertebrates. In addition to the major structural proteins (N, P, M, G, and L), many rhabdoviruses encode a diverse array of accessory proteins of largely unknown function. Understanding the role of these proteins may reveal much about host-pathogen interactions in infected cells. Here we examine accessory protein U3 of Wongabel virus, an arthropod-borne rhabdovirus that infects birds. We show that U3 enters the
- Published
- 2015
27. Phenoloxidase Activity Acts as a Mosquito Innate Immune Response against Infection with Semliki Forest Virus
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Vernick, KD, Rodriguez-Andres, J, Rani, S, Varjak, M, Chase-Topping, ME, Beck, MH, Ferguson, MC, Schnettler, E, Fragkoudis, R, Barry, G, Merits, A, Fazakerley, JK, Strand, MR, Kohl, A, Vernick, KD, Rodriguez-Andres, J, Rani, S, Varjak, M, Chase-Topping, ME, Beck, MH, Ferguson, MC, Schnettler, E, Fragkoudis, R, Barry, G, Merits, A, Fazakerley, JK, Strand, MR, and Kohl, A
- Abstract
Several components of the mosquito immune system including the RNA interference (RNAi), JAK/STAT, Toll and IMD pathways have previously been implicated in controlling arbovirus infections. In contrast, the role of the phenoloxidase (PO) cascade in mosquito antiviral immunity is unknown. Here we show that conditioned medium from the Aedes albopictus-derived U4.4 cell line contains a functional PO cascade, which is activated by the bacterium Escherichia coli and the arbovirus Semliki Forest virus (SFV) (Togaviridae; Alphavirus). Production of recombinant SFV expressing the PO cascade inhibitor Egf1.0 blocked PO activity in U4.4 cell- conditioned medium, which resulted in enhanced spread of SFV. Infection of adult female Aedes aegypti by feeding mosquitoes a bloodmeal containing Egf1.0-expressing SFV increased virus replication and mosquito mortality. Collectively, these results suggest the PO cascade of mosquitoes plays an important role in immune defence against arboviruses.
- Published
- 2012
28. Detection and identification of putative bacterial endosymbionts and endogenous viruses in tick cell lines
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Alberdi, MP, Dalby, MJ, Rodriguez-Andres, J, Fazakerley, JK, Kohl, A, Bell-Sakyi, L, Alberdi, MP, Dalby, MJ, Rodriguez-Andres, J, Fazakerley, JK, Kohl, A, and Bell-Sakyi, L
- Abstract
As well as being vectors of many viral, bacterial, and protozoan pathogens of medical and veterinary importance, ticks harbour a variety of microorganisms which are not known to be pathogenic for vertebrate hosts. Continuous cell lines established from ixodid and argasid ticks could be infected with such endosymbiotic bacteria and endogenous viruses, but to date very few cell lines have been examined for their presence. DNA and RNA extracted from over 50 tick cell lines deposited in the Roslin Wellcome Trust Tick Cell Biobank (http://tickcells.roslin.ac.uk) were screened for presence of bacteria and RNA viruses, respectively. Sequencing of PCR products amplified using pan-16S rRNA primers revealed the presence of DNA sequences from bacterial endosymbionts in several cell lines derived from Amblyomma and Dermacentor spp. ticks. Identification to species level was attempted using Rickettsia- and Francisella-specific primers. Pan-Nairovirus primers amplified PCR products of uncertain specificity in cell lines derived from Rhipicephalus, Hyalomma, Ixodes, Carios, and Ornithodoros spp. ticks. Further characterisation attempted with primers specific for Crimean-Congo haemorrhagic fever virus segments confirmed the absence of this arbovirus in the cells. A set of pan-Flavivirus primers did not detect endogenous viruses in any of the cell lines. Transmission electron microscopy revealed the presence of endogenous reovirus-like viruses in many of the cell lines; only 4 of these lines gave positive results with primers specific for the tick Orbivirus St Croix River virus, indicating that there may be additional, as yet undescribed 'tick-only' viruses inhabiting tick cell lines.
- Published
- 2012
29. PKR acts early in infection to suppress Semliki Forest virus production and strongly enhances the type I interferon response
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Barry, G, Breakwell, L, Fragkoudis, R, Attarzadeh-Yazdi, G, Rodriguez-Andres, J, Kohl, A, Fazakerley, JK, Barry, G, Breakwell, L, Fragkoudis, R, Attarzadeh-Yazdi, G, Rodriguez-Andres, J, Kohl, A, and Fazakerley, JK
- Abstract
The double-stranded RNA-activated protein kinase (PKR) is a key regulator of protein translation, interferon (IFN) expression and cell survival. Upon infection of vertebrate cells in continuous culture, the alphavirus Semliki Forest virus (SFV) initiates apoptosis and IFN synthesis. To determine the effect of PKR on SFV infection, we studied the course of infection in wild-type (wt) mice, mice with a genetic deletion of PKR (PKR-/-) and mouse embryo fibroblasts (MEFs) derived from these mice. In MEFs, PKR delayed virus protein synthesis, production of infectious virus and caspase-3-activated cell death and reduced the yield of infectious virus by 90%. Small interfering RNA suppression of PKR levels in NIH-3T3 cells also reduced virus production and apoptosis. In MEFs, PKR was not required for initiation of IFN-beta gene transcription, but contributed strongly to the magnitude of this response. Levels of IFN-beta transcripts in PKR-/- MEFs at 8 h were 80% lower than those in wt MEFs and levels of functional IFN at 24 h were 95% lower. Following infection of wt and PKR-/- mice, SFV4 and SFV A7(74) were avirulent. PKR increased levels of serum IFN and the rate of clearance of infectious virus from the brain. In summary, in response to SFV, PKR exerts an early antiviral effect that delays virus protein production and release of infectious virus and, whilst PKR is not required for induction of apoptosis or activation of the type I IFN response, it strongly augments the type I IFN response and contributes to clearance of infectious virus from the mouse brain.
- Published
- 2009
30. In-vivo human study of skin optical properties in individuals with obesity.
- Author
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Rodriguez, Andres J., Alzamora, Michael, Ajmal, Ajmal, Boonya-Ananta, Tananant, Du Le, Vinh Nguyen, Fredriksson, Ingemar, Strömberg, Tomas, and Ramella-Roman, Jessica C.
- Published
- 2021
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- View/download PDF
31. Sources of Inaccuracy in Photoplethysmography for Continuous Cardiovascular Monitoring.
- Author
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Fine, Jesse, Branan, Kimberly L., Rodriguez, Andres J., Boonya-ananta, Tananant, Ajmal, Ramella-Roman, Jessica C., McShane, Michael J., and Coté, Gerard L.
- Subjects
BODY temperature ,PHOTOPLETHYSMOGRAPHY ,HEART beat ,SYMPATHETIC nervous system ,HEART rate monitors ,BLOOD volume - Abstract
Photoplethysmography (PPG) is a low-cost, noninvasive optical technique that uses change in light transmission with changes in blood volume within tissue to provide information for cardiovascular health and fitness. As remote health and wearable medical devices become more prevalent, PPG devices are being developed as part of wearable systems to monitor parameters such as heart rate (HR) that do not require complex analysis of the PPG waveform. However, complex analyses of the PPG waveform yield valuable clinical information, such as: blood pressure, respiratory information, sympathetic nervous system activity, and heart rate variability. Systems aiming to derive such complex parameters do not always account for realistic sources of noise, as testing is performed within controlled parameter spaces. A wearable monitoring tool to be used beyond fitness and heart rate must account for noise sources originating from individual patient variations (e.g., skin tone, obesity, age, and gender), physiology (e.g., respiration, venous pulsation, body site of measurement, and body temperature), and external perturbations of the device itself (e.g., motion artifact, ambient light, and applied pressure to the skin). Here, we present a comprehensive review of the literature that aims to summarize these noise sources for future PPG device development for use in health monitoring. [ABSTRACT FROM AUTHOR]
- Published
- 2021
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32. Modeling of a photoplethysmographic (PPG) waveform through monte carlo as a method of deriving blood pressure in individuals with obesity.
- Author
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Ibey, Bennett L., Linz, Norbert, Boonya-ananta, Tananant, Rodriguez, Andres J., Hansen, Anders K., Hutcheson, Joshua D., and Ramella-Roman, Jessica C.
- Published
- 2019
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33. Experimental integration of a spatial frequency domain spectroscopy and pulse cam system for quantifying changes in skin optical properties and vasculature among individuals with obesity
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Choi, Bernard, Zeng, Haishan, Rodriguez, Andres J., Boonya-ananta, Tananant, Maity, Akash Kumar, Veeraraghavan, Ashok, Saager, Rolf B., and Ramella-Roman, Jessica C.
- Published
- 2020
- Full Text
- View/download PDF
34. Visible light photosensitised cross-flow microfiltration membrane reactors for managing microplastic-contaminated bio-effluents.
- Author
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Bushnaq H, Pu S, Burton T, Rodriguez-Andres J, Montoya JC, Mackenzie J, Munro C, Palmisano G, Mettu S, Mcelhinney J, and Dumée LF
- Abstract
The demand for advanced water treatment solutions necessitates the development of multifunctional, photodynamically active membranes. Phthalocyanines (Pcs), a class of organic photosensitizers, offer significant potential for enhancing treatment efficacy through photodynamic activity. This study reports the development of Pc-modified polymeric microfiltration membranes as visible-light-responsive, multifunctional membrane reactors with enhanced photodynamic and filtration properties. Cobalt phthalocyanine (CoPc), zinc phthalocyanine (ZnPc), tetra-amino zinc phthalocyanine (TAZnPc), and tetra-sulfonated aluminum phthalocyanine (TSAlPc) were integrated into the membranes, imparting notable changes in morphology, surface wettability, and chemical functionality. Characterization revealed improvements in optical responsiveness and surface properties that contributed to robust photodynamic and filtration performance. Static photodynamic evaluations demonstrated high efficacy, with ZnPc mixed matrix membrane (MMM) achieving superior dye degradation and TSAlPc grafted membrane (GM) yielding significant bacterial inactivation. Filtration trials confirmed ZnPc MMM's biofouling resistance and permeance stability, reaching 99.97 % rejection of bio-fouled microplastics (MPs) and a 45 % permeance enhancement under irradiation. Virus filtration results demonstrated TSAlPc MMM's viral retention efficacy, achieving a 2.05-log reduction against Influenza A virus. These findings underscore the potential of Pc-functionalized membranes as promising candidates for advanced water treatment applications, offering robust contaminant rejection, biofouling control, and broad-spectrum antimicrobial efficacy in a single, multifunctional platform., Competing Interests: Declaration of competing interest The authors declare no competing interests., (Copyright © 2025 Elsevier Ltd. All rights reserved.)
- Published
- 2025
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35. Mosquito transgenerational antiviral immunity is mediated by vertical transfer of virus DNA sequences and RNAi.
- Author
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Rodriguez-Andres J, Axford J, Hoffmann A, and Fazakerley J
- Abstract
Mosquitoes are important vectors for transmission of many viruses of public and veterinary health concern. These viruses most commonly have an RNA genome and infect mosquitoes for life. The principal mosquito antiviral response is the RNAi system which destroys virus RNA. Here, we confirm an earlier study that Aedes aegypti mosquitoes infected with positive-stranded RNA arboviruses can transmit specific immunity to their offspring. We show that this trans -generational immunity requires replication of virus RNA and reverse transcription of vRNA to vDNA in the infected parents and intergenerational transfer of vDNA. This vDNA is both genome-integrated and episomal. The episomal vDNA sequences are flanked by retrotransposon long-terminal repeats, predominantly Copia -like. Integrated vDNA sequences are propagated along several generations but specific immunity is effective only for a few generations and correlates with the presence of vRNA and episomal vDNA. This understanding raises new possibilities for the control of important mosquito-borne virus diseases., Competing Interests: The authors declare no competing interests., (© 2023 The Authors.)
- Published
- 2023
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36. Dry-spun carbon nanotube ultrafiltration membranes tailored by anti-viral metal oxide coatings for human coronavirus 229E capture in water.
- Author
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Rashed AO, Huynh C, Merenda A, Rodriguez-Andres J, Kong L, Kondo T, Razal JM, and Dumée LF
- Abstract
Although waterborne virus removal may be achieved using separation membrane technologies, such technologies remain largely inefficient at generating virus-free effluents due to the lack of anti-viral reactivity of conventional membrane materials required to deactivating viruses. Here, a stepwise approach towards simultaneous filtration and disinfection of Human Coronavirus 229E (HCoV-229E) in water effluents, is proposed by engineering dry-spun ultrafiltration carbon nanotube (CNT) membranes, coated with anti-viral SnO
2 thin films via atomic layer deposition. The thickness and pore size of the engineered CNT membranes were fine-tuned by varying spinnable CNT sheets and their relative orientations on carbon nanofibre (CNF) porous supports to reach thicknesses less than 1 µm and pore size around 28 nm. The nanoscale SnO2 coatings were found to further reduce the pore size down to ∼21 nm and provide more functional groups on the membrane surface to capture the viruses via size exclusion and electrostatic attractions. The synthesized CNT and SnO2 coated CNT membranes were shown to attain a viral removal efficiency above 6.7 log10 against HCoV-229E virus with fast water permeance up to ∼4 × 103 and 3.5 × 103 L.m-2 .h-1 .bar-1 , respectively. Such high performance was achieved by increasing the dry-spun CNT sheets up to 60 layers, orienting successive 30 CNT layers at 45°, and coating 40 nm SnO2 on the synthesized membranes. The current study provides an efficient scalable fabrication scheme to engineer flexible ultrafiltration CNT-based membranes for cost-effective filtration and inactivation of waterborne viruses to outperform the state-of-the-art ultrafiltration membranes., Competing Interests: The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (© 2023 Elsevier Ltd. All rights reserved.)- Published
- 2023
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37. A wMel Wolbachia variant in Aedes aegypti from field-collected Drosophila melanogaster with increased phenotypic stability under heat stress.
- Author
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Gu X, Ross PA, Rodriguez-Andres J, Robinson KL, Yang Q, Lau MJ, and Hoffmann AA
- Subjects
- Animals, Drosophila melanogaster genetics, Heat-Shock Response, Mosquito Vectors, Aedes genetics, Wolbachia genetics
- Abstract
Mosquito-borne diseases remain a major cause of morbidity and mortality. Population replacement strategies involving the wMel strain of Wolbachia are being used widely to control mosquito-borne diseases. However, these strategies may be influenced by temperature because wMel is vulnerable to heat. wMel infections in Drosophila melanogaster are genetically diverse, but few transinfections of wMel variants have been generated in Aedes aegypti. Here, we successfully transferred a wMel variant (termed wMelM) originating from a field-collected D. melanogaster into Ae. aegypti. The new wMelM variant (clade I) is genetically distinct from the original wMel transinfection (clade III), and there are no genomic differences between wMelM in its original and transinfected host. We compared wMelM with wMel in its effects on host fitness, temperature tolerance, Wolbachia density, vector competence, cytoplasmic incompatibility and maternal transmission under heat stress in a controlled background. wMelM showed a higher heat tolerance than wMel, likely due to higher overall densities within the mosquito. Both wMel variants had minimal host fitness costs, complete cytoplasmic incompatibility and maternal transmission, and dengue virus blocking under laboratory conditions. Our results highlight phenotypic differences between Wolbachia variants and wMelM shows potential as an alternative strain in areas with strong seasonal temperature fluctuations., (© 2022 The Authors. Environmental Microbiology published by Society for Applied Microbiology and John Wiley & Sons Ltd.)
- Published
- 2022
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38. Superinfection Exclusion in Mosquitoes and Its Potential as an Arbovirus Control Strategy.
- Author
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Laureti M, Paradkar PN, Fazakerley JK, and Rodriguez-Andres J
- Subjects
- Animals, Arbovirus Infections transmission, Humans, Mosquito Vectors virology, Virus Replication, Arbovirus Infections prevention & control, Arboviruses physiology, Culicidae virology, Mosquito Control methods, Superinfection virology
- Abstract
The continuing emergence of arbovirus disease outbreaks around the world, despite the use of vector control strategies, warrants the development of new strategies to reduce arbovirus transmission. Superinfection exclusion, a phenomenon whereby a primary virus infection prevents the replication of a second closely related virus, has potential to control arbovirus disease emergence and outbreaks. This phenomenon has been observed for many years in plants, insects and mammalian cells. In this review, we discuss the significance of identifying novel vector control strategies, summarize studies exploring arbovirus superinfection exclusion and consider the potential for this phenomenon to be the basis for novel arbovirus control strategies.
- Published
- 2020
- Full Text
- View/download PDF
39. Tenth Scientific Biennial Meeting of the Australasian Virology Society-AVS10 2019.
- Author
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Helbig KJ, Bull RA, Ambrose R, Beard MR, Blanchard H, Böcking T, Chua B, Colmant AMG, Crosse KM, Purcell DFJ, Fraser J, Hayward JA, Hamilton ST, Husain M, MacDiarmid R, Mackenzie JM, Moseley GW, Nguyen THO, Quiñones-Mateu ME, Robinson K, Rodrigo C, Rodriguez-Andres J, Rudd PA, Werno A, White P, Young P, Speck P, Hibma M, Drummer HE, and Tachedjian G
- Subjects
- Australia, Awards and Prizes, Group Processes, Societies, Scientific, Virology organization & administration
- Abstract
The Australasian Virology Society (AVS) aims to promote, support and advocate for the discipline of virology in the Australasian region. The society was incorporated in 2011 after 10 years operating as the Australian Virology Group (AVG) founded in 2001, coinciding with the inaugural biennial scientific meeting. AVS conferences aim to provide a forum for the dissemination of all aspects of virology, foster collaboration, and encourage participation by students and post-doctoral researchers. The tenth Australasian Virology Society (AVS10) scientific meeting was held on 2-5 December 2019 in Queenstown, New Zealand. This report highlights the latest research presented at the meeting, which included cutting-edge virology presented by our international plenary speakers Ana Fernandez-Sesma and Benjamin tenOever, and keynote Richard Kuhn. AVS10 honoured female pioneers in Australian virology, Lorena Brown and Barbara Coulson. We report outcomes from the AVS10 career development session on "Successfully transitioning from post-doc to lab head", winners of best presentation awards, and the AVS gender equity policy, initiated in 2013. Plans for the 2021 meeting are underway which will celebrate the 20th anniversary of AVS where it all began, in Fraser Island, Queensland, Australia., Competing Interests: The authors declare no conflict of interest. The conference sponsors had no role in the decision to publish this report.
- Published
- 2020
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40. Flavivirus Receptors: Diversity, Identity, and Cell Entry.
- Author
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Laureti M, Narayanan D, Rodriguez-Andres J, Fazakerley JK, and Kedzierski L
- Subjects
- Animals, Arthropods virology, Central Nervous System immunology, Central Nervous System metabolism, Central Nervous System virology, Culicidae virology, Disease Vectors, Flavivirus genetics, Flavivirus pathogenicity, Flavivirus Infections transmission, Flavivirus Infections virology, Genome, Viral genetics, Humans, Insect Proteins immunology, Receptors, Virus immunology, Ticks virology, Viral Proteins genetics, Viral Proteins immunology, Viral Proteins metabolism, Virus Internalization, Flavivirus immunology, Flavivirus Infections immunology, Host-Pathogen Interactions immunology, Insect Proteins metabolism, Receptors, Virus metabolism
- Abstract
Flaviviruses are emerging and re-emerging arthropod-borne pathogens responsible for significant mortality and morbidity worldwide. The genus comprises more than seventy small, positive-sense, single-stranded RNA viruses, which are responsible for a spectrum of human and animal diseases ranging in symptoms from mild, influenza-like infection to fatal encephalitis and haemorrhagic fever. Despite genomic and structural similarities across the genus, infections by different flaviviruses result in disparate clinical presentations. This review focusses on two haemorrhagic flaviviruses, dengue virus and yellow fever virus, and two neurotropic flaviviruses, Japanese encephalitis virus and Zika virus. We review current knowledge on host-pathogen interactions, virus entry strategies and tropism.
- Published
- 2018
- Full Text
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41. Cullin4 Is Pro-Viral during West Nile Virus Infection of Culex Mosquitoes.
- Author
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Paradkar PN, Duchemin JB, Rodriguez-Andres J, Trinidad L, and Walker PJ
- Subjects
- Aedes immunology, Aedes metabolism, Aedes virology, Animals, Cell Line, Culex immunology, Culex metabolism, Cullin Proteins antagonists & inhibitors, Cullin Proteins genetics, Dengue Virus immunology, Dengue Virus physiology, Female, Gastrointestinal Tract immunology, Gastrointestinal Tract metabolism, Gastrointestinal Tract virology, Gene Knockdown Techniques, Insect Proteins antagonists & inhibitors, Insect Proteins genetics, Janus Kinases antagonists & inhibitors, Janus Kinases genetics, Janus Kinases metabolism, RNA antagonists & inhibitors, RNA metabolism, RNA Interference, RNA, Viral antagonists & inhibitors, RNA, Viral metabolism, Recombinant Proteins chemistry, Recombinant Proteins metabolism, STAT Transcription Factors antagonists & inhibitors, STAT Transcription Factors genetics, STAT Transcription Factors metabolism, Signal Transduction, Transcriptome, West Nile virus immunology, West Nile virus isolation & purification, Culex virology, Cullin Proteins metabolism, Enzyme Induction, Immune Evasion, Insect Proteins metabolism, Virus Replication, West Nile virus physiology
- Abstract
Although mosquitoes serve as vectors of many pathogens of public health importance, their response to viral infection is poorly understood. It also remains to be investigated whether viruses deploy some mechanism to be able to overcome this immune response. Here, we have used an RNA-Seq approach to identify differentially regulated genes in Culex quinquefasciatus cells following West Nile virus (WNV) infection, identifying 265 transcripts from various cellular pathways that were either upregulated or downregulated. Ubiquitin-proteasomal pathway genes, comprising 12% of total differentially regulated genes, were selected for further validation by real time RT-qPCR and functional analysis. It was found that treatment of infected cells with proteasomal inhibitor, MG-132, decreased WNV titers, indicating importance of this pathway during infection process. In infection models, the Culex ortholog of mammalian Cul4A/B (cullin RING ubiquitin ligase) was found to be upregulated in vitro as well as in vivo, especially in midguts of mosquitoes. Gene knockdown using dsRNA and overexpression studies indicated that Culex Cul4 acts as a pro-viral protein by degradation of CxSTAT via ubiquitin-proteasomal pathway. We also show that gene knockdown of Culex Cul4 leads to activation of the Jak-STAT pathway in mosquitoes leading to decrease viral replication in the body as well as saliva. Our results suggest a novel mechanism adopted by WNV to overcome mosquito immune response and increase viral replication.
- Published
- 2015
- Full Text
- View/download PDF
42. Wongabel rhabdovirus accessory protein U3 targets the SWI/SNF chromatin remodeling complex.
- Author
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Joubert DA, Rodriguez-Andres J, Monaghan P, Cummins M, McKinstry WJ, Paradkar PN, Moseley GW, and Walker PJ
- Subjects
- Animals, Cell Line, Cell Nucleus chemistry, Chromatography, Affinity, Insecta, Mammals, Microscopy, Confocal, Two-Hybrid System Techniques, Chromatin Assembly and Disassembly, Chromosomal Proteins, Non-Histone metabolism, Host-Pathogen Interactions, Rhabdoviridae immunology, Rhabdoviridae physiology, Transcription Factors metabolism, Viral Proteins metabolism
- Abstract
Unlabelled: Wongabel virus (WONV) is an arthropod-borne rhabdovirus that infects birds. It is one of the growing array of rhabdoviruses with complex genomes that encode multiple accessory proteins of unknown function. In addition to the five canonical rhabdovirus structural protein genes (N, P, M, G, and L), the 13.2-kb negative-sense single-stranded RNA (ssRNA) WONV genome contains five uncharacterized accessory genes, one overlapping the N gene (Nx or U4), three located between the P and M genes (U1 to U3), and a fifth one overlapping the G gene (Gx or U5). Here we show that WONV U3 is expressed during infection in insect and mammalian cells and is required for efficient viral replication. A yeast two-hybrid screen against a mosquito cell cDNA library identified that WONV U3 interacts with the 83-amino-acid (aa) C-terminal domain of SNF5, a component of the SWI/SNF chromatin remodeling complex. The interaction was confirmed by affinity chromatography, and nuclear colocalization was established by confocal microscopy. Gene expression studies showed that SNF5 transcripts are upregulated during infection of mosquito cells with WONV, as well as West Nile virus (Flaviviridae) and bovine ephemeral fever virus (Rhabdoviridae), and that SNF5 knockdown results in increased WONV replication. WONV U3 also inhibits SNF5-regulated expression of the cytokine gene CSF1. The data suggest that WONV U3 targets the SWI/SNF complex to block the host response to infection., Importance: The rhabdoviruses comprise a large family of RNA viruses infecting plants, vertebrates, and invertebrates. In addition to the major structural proteins (N, P, M, G, and L), many rhabdoviruses encode a diverse array of accessory proteins of largely unknown function. Understanding the role of these proteins may reveal much about host-pathogen interactions in infected cells. Here we examine accessory protein U3 of Wongabel virus, an arthropod-borne rhabdovirus that infects birds. We show that U3 enters the nucleus and interacts with SNF5, a component of the chromatin remodeling complex that is upregulated in response to infection and restricts viral replication. We also show that U3 inhibits SNF5-regulated expression of the cytokine colony-stimulating factor 1 (CSF1), suggesting that it targets the chromatin remodeling complex to block the host response to infection. This study appears to provide the first evidence of a virus targeting SNF5 to inhibit host gene expression., (Copyright © 2015, American Society for Microbiology. All Rights Reserved.)
- Published
- 2015
- Full Text
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43. Detection and identification of putative bacterial endosymbionts and endogenous viruses in tick cell lines.
- Author
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Alberdi MP, Dalby MJ, Rodriguez-Andres J, Fazakerley JK, Kohl A, and Bell-Sakyi L
- Subjects
- Animals, Arachnid Vectors virology, Argasidae ultrastructure, Argasidae virology, Base Sequence, Cell Line, DNA Primers genetics, DNA, Complementary genetics, Humans, Ixodidae ultrastructure, Ixodidae virology, Microscopy, Electron, Transmission, Molecular Sequence Data, Polymerase Chain Reaction, RNA Viruses ultrastructure, RNA, Bacterial genetics, RNA, Ribosomal, 16S genetics, RNA, Viral genetics, Sequence Alignment, Sequence Analysis, DNA, Species Specificity, Symbiosis, Virion ultrastructure, Arachnid Vectors microbiology, Argasidae microbiology, Bacteria genetics, Ixodidae microbiology, RNA Viruses genetics
- Abstract
As well as being vectors of many viral, bacterial, and protozoan pathogens of medical and veterinary importance, ticks harbour a variety of microorganisms which are not known to be pathogenic for vertebrate hosts. Continuous cell lines established from ixodid and argasid ticks could be infected with such endosymbiotic bacteria and endogenous viruses, but to date very few cell lines have been examined for their presence. DNA and RNA extracted from over 50 tick cell lines deposited in the Roslin Wellcome Trust Tick Cell Biobank (http://tickcells.roslin.ac.uk) were screened for presence of bacteria and RNA viruses, respectively. Sequencing of PCR products amplified using pan-16S rRNA primers revealed the presence of DNA sequences from bacterial endosymbionts in several cell lines derived from Amblyomma and Dermacentor spp. ticks. Identification to species level was attempted using Rickettsia- and Francisella-specific primers. Pan-Nairovirus primers amplified PCR products of uncertain specificity in cell lines derived from Rhipicephalus, Hyalomma, Ixodes, Carios, and Ornithodoros spp. ticks. Further characterisation attempted with primers specific for Crimean-Congo haemorrhagic fever virus segments confirmed the absence of this arbovirus in the cells. A set of pan-Flavivirus primers did not detect endogenous viruses in any of the cell lines. Transmission electron microscopy revealed the presence of endogenous reovirus-like viruses in many of the cell lines; only 4 of these lines gave positive results with primers specific for the tick Orbivirus St Croix River virus, indicating that there may be additional, as yet undescribed 'tick-only' viruses inhabiting tick cell lines., (Copyright © 2012 Elsevier GmbH. All rights reserved.)
- Published
- 2012
- Full Text
- View/download PDF
44. Phenoloxidase activity acts as a mosquito innate immune response against infection with Semliki Forest virus.
- Author
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Rodriguez-Andres J, Rani S, Varjak M, Chase-Topping ME, Beck MH, Ferguson MC, Schnettler E, Fragkoudis R, Barry G, Merits A, Fazakerley JK, Strand MR, and Kohl A
- Subjects
- Animals, Cell Line, Cricetinae, Female, Aedes immunology, Aedes virology, Alphavirus Infections immunology, Immunity, Innate, Insect Proteins immunology, Monophenol Monooxygenase immunology, Semliki forest virus physiology, Virus Replication physiology
- Abstract
Several components of the mosquito immune system including the RNA interference (RNAi), JAK/STAT, Toll and IMD pathways have previously been implicated in controlling arbovirus infections. In contrast, the role of the phenoloxidase (PO) cascade in mosquito antiviral immunity is unknown. Here we show that conditioned medium from the Aedes albopictus-derived U4.4 cell line contains a functional PO cascade, which is activated by the bacterium Escherichia coli and the arbovirus Semliki Forest virus (SFV) (Togaviridae; Alphavirus). Production of recombinant SFV expressing the PO cascade inhibitor Egf1.0 blocked PO activity in U4.4 cell- conditioned medium, which resulted in enhanced spread of SFV. Infection of adult female Aedes aegypti by feeding mosquitoes a bloodmeal containing Egf1.0-expressing SFV increased virus replication and mosquito mortality. Collectively, these results suggest the PO cascade of mosquitoes plays an important role in immune defence against arboviruses.
- Published
- 2012
- Full Text
- View/download PDF
45. Antiviral RNA interference responses induced by Semliki Forest virus infection of mosquito cells: characterization, origin, and frequency-dependent functions of virus-derived small interfering RNAs.
- Author
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Siu RW, Fragkoudis R, Simmonds P, Donald CL, Chase-Topping ME, Barry G, Attarzadeh-Yazdi G, Rodriguez-Andres J, Nash AA, Merits A, Fazakerley JK, and Kohl A
- Subjects
- Aedes immunology, Animals, Cell Line, RNA, Double-Stranded genetics, RNA, Double-Stranded metabolism, RNA, Small Interfering genetics, RNA, Viral genetics, RNA, Viral metabolism, Semliki forest virus genetics, Aedes physiology, Aedes virology, RNA Interference, RNA, Small Interfering metabolism, Semliki forest virus growth & development
- Abstract
RNA interference (RNAi) is an important mosquito defense mechanism against arbovirus infection. In this paper we study the processes underlying antiviral RNAi in Aedes albopictus-derived U4.4 mosquito cells infected with Semliki Forest virus (SFV) (Togaviridae; Alphavirus). The production of virus-derived small interfering RNAs (viRNAs) from viral double-stranded RNA (dsRNA) is a key event in this host response. dsRNA could be formed by RNA replication intermediates, by secondary structures in RNA genomes or antigenomes, or by both. Which of these dsRNAs is the substrate for the generation of viRNAs is a fundamental question. Here we used deep sequencing of viRNAs and bioinformatic analysis of RNA secondary structures to gain insights into the characteristics and origins of viRNAs. An asymmetric distribution of SFV-derived viRNAs with notable areas of high-level viRNA production (hot spots) and no or a low frequency of viRNA production (cold spots) along the length of the viral genome with a slight bias toward the production of genome-derived viRNAs over antigenome-derived viRNAs was observed. Bioinformatic analysis suggests that hot spots of viRNA production are rarely but not generally associated with putative secondary structures in the SFV genome, suggesting that most viRNAs are derived from replicative dsRNA. A pattern of viRNAs almost identical to those of A. albopictus cells was observed for Aedes aegypti-derived Aag2 cells, suggesting common mechanisms that lead to viRNA production. Hot-spot viRNAs were found to be significantly less efficient at mediating antiviral RNAi than cold-spot viRNAs, pointing toward a nucleic acid-based viral decoy mechanism to evade the RNAi response.
- Published
- 2011
- Full Text
- View/download PDF
46. Cell-to-cell spread of the RNA interference response suppresses Semliki Forest virus (SFV) infection of mosquito cell cultures and cannot be antagonized by SFV.
- Author
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Attarzadeh-Yazdi G, Fragkoudis R, Chi Y, Siu RW, Ulper L, Barry G, Rodriguez-Andres J, Nash AA, Bouloy M, Merits A, Fazakerley JK, and Kohl A
- Subjects
- Animals, Cell Line, Cricetinae, Gene Expression Regulation, Viral, RNA, Viral genetics, Virus Replication, Culicidae virology, RNA Interference, Semliki forest virus genetics
- Abstract
In their vertebrate hosts, arboviruses such as Semliki Forest virus (SFV) (Togaviridae) generally counteract innate defenses and trigger cell death. In contrast, in mosquito cells, following an early phase of efficient virus production, a persistent infection with low levels of virus production is established. Whether arboviruses counteract RNA interference (RNAi), which provides an important antiviral defense system in mosquitoes, is an important question. Here we show that in Aedes albopictus-derived mosquito cells, SFV cannot prevent the establishment of an antiviral RNAi response or prevent the spread of protective antiviral double-stranded RNA/small interfering RNA (siRNA) from cell to cell, which can inhibit the replication of incoming virus. The expression of tombusvirus siRNA-binding protein p19 by SFV strongly enhanced virus spread between cultured cells rather than virus replication in initially infected cells. Our results indicate that the spread of the RNAi signal contributes to limiting virus dissemination.
- Published
- 2009
- Full Text
- View/download PDF
47. PKR acts early in infection to suppress Semliki Forest virus production and strongly enhances the type I interferon response.
- Author
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Barry G, Breakwell L, Fragkoudis R, Attarzadeh-Yazdi G, Rodriguez-Andres J, Kohl A, and Fazakerley JK
- Subjects
- Animals, Brain virology, Cells, Cultured, Fibroblasts virology, Interferon Type I blood, Mice, Mice, Knockout, eIF-2 Kinase deficiency, Alphavirus Infections virology, Interferon Type I immunology, Semliki forest virus immunology, eIF-2 Kinase metabolism
- Abstract
The double-stranded RNA-activated protein kinase (PKR) is a key regulator of protein translation, interferon (IFN) expression and cell survival. Upon infection of vertebrate cells in continuous culture, the alphavirus Semliki Forest virus (SFV) initiates apoptosis and IFN synthesis. To determine the effect of PKR on SFV infection, we studied the course of infection in wild-type (wt) mice, mice with a genetic deletion of PKR (PKR-/-) and mouse embryo fibroblasts (MEFs) derived from these mice. In MEFs, PKR delayed virus protein synthesis, production of infectious virus and caspase-3-activated cell death and reduced the yield of infectious virus by 90%. Small interfering RNA suppression of PKR levels in NIH-3T3 cells also reduced virus production and apoptosis. In MEFs, PKR was not required for initiation of IFN-beta gene transcription, but contributed strongly to the magnitude of this response. Levels of IFN-beta transcripts in PKR-/- MEFs at 8 h were 80% lower than those in wt MEFs and levels of functional IFN at 24 h were 95% lower. Following infection of wt and PKR-/- mice, SFV4 and SFV A7(74) were avirulent. PKR increased levels of serum IFN and the rate of clearance of infectious virus from the brain. In summary, in response to SFV, PKR exerts an early antiviral effect that delays virus protein production and release of infectious virus and, whilst PKR is not required for induction of apoptosis or activation of the type I IFN response, it strongly augments the type I IFN response and contributes to clearance of infectious virus from the mouse brain.
- Published
- 2009
- Full Text
- View/download PDF
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