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Ocean warming driven bleaching is one of the greatest threats to zooxanthellate cnidarians in the Anthropocene. Bleaching is the loss of Symbiodiniaceae, chlorophyll, or both from zooxanthellate animals. To quantify bleaching and recovery, standardised methods for quantification of Symbiodiniaceae and chlorophyll concentrations have been developed for reef-building scleractinian corals, but no such standard method has been developed for octocorals. For stony corals, quantification of Symbiodiniaceae and chlorophyll concentrations often relies on normalisation to skeletal surface area or unit of biomass [i.e., protein, ash-free dry weight (AFDW)]. Stiff octocorals do not change their volume, as such studies have used volume and surface area to standardise densities, but soft-bodied octocorals can alter their size using water movement within the animal; therefore, Symbiodiniaceae and chlorophyll cannot accurately be measured per unit of surface area and are instead measured in units of Symbiodiniaceae and chlorophyll per μg of host protein or AFDW. Though AFDW is more representative of the full biomass composition than host protein, AFDW is more time and resource intensive. Here, we provide a streamlined methodology to quantify Symbiodiniaceae density, chlorophyll concentration, and protein content in soft-bodied octocorals. This technique uses minimal equipment, does not require freeze-drying or burning samples to obtain ash weight, and is effective for down to 0.2 g wet tissue. Bulk samples can be centrifuged, the Symbiodiniaceae pellet washed, and the supernatant saved for protein analysis. This efficient technique allows for clean, easy to count samples of Symbiodiniaceae with minimal animal protein contamination. Chlorophyll a and c2 extractions occurs at different rates, with chlorophyll a taking 24 h to extract completely at 4°C and chlorophyll c2 taking 48 h. Finally, we found that where necessary, wet weight may be used as a proxy for protein content, but the correlation of protein and wet weight varies by species and protein should be used when possible. Overall, we have created a rapid and accurate method for quantification of bleaching markers in octocorals.

In studies of habitat-forming species, those that are not spatially dominant are often considered “non-primary” habitat and may be overlooked. This is despite the fact that minority habitat formers can provide critical complexity, food, and other services that underpin ecosystem biodiversity. Octocorals and anemones are found in marine and estuarine habitats across all climate zones. Despite their potentially important ecological roles, to date there have been few studies of their specific threats and stressors or attempts at their restoration. Here we review studies of the ecology of octocorals and anemones with a focus on threats and restoration. We identify many threats including habitat damage, collection and trade, disease, predation, pollution, and the most wide-spread – climate change. While evidence suggests that some octocorals and anemone populations may be more resilient to disturbances than stony corals because they often recruit and grow quickly, resilience is not guaranteed. Instead, resilience or susceptibility within this large group is likely to be site and species specific. We find that the loss of octocorals and anemones has been difficult to quantify as most species have no hard structures that remain following a mortality event. Only through long-term monitoring efforts have researchers been able to document change in these populations. Due to the increasing extent and severity of human impacts in marine ecosystems, restoration of habitat forming species is becoming increasingly necessary after disturbance events. To illustrate the challenges ahead for octocoral and anemone restoration, we present two examples of ongoing restoration efforts assessed against the International Standards for the Practice of Ecological Restoration. Restoration planning and implementation progress are documented for the Mediterranean red coral Corallium rubrum and the temperate Australian cauliflower soft coral, Dendronephthya australis. This review and the detailed case studies demonstrate that while some octocorals and anemones can provide resilient habitat within reef systems, a greater research focus on their ecology, threats, and restoration potential is urgently required.