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The Zhaiping Ag–Pb–Zn vein deposit in the Coastal Volcanic Belt of southeastern China, which resulted from subduction of the paleo-Pacific oceanic lithosphere beneath the South China Block, is hosted by Early Cretaceous sub-volcanic rocks (rhyolite porphyry) and younger granite porphyry and quartz porphyry. Three generations of veins have been recognized: (i) pre-ore quartz + pyrite, (ii) syn-ore silver + pyrite + pyrrhotite + base metal sulfides + quartz + sericite, and (iii) post-ore quartz + calcite + fluorite veins. Rubidium–Sr dating of syn-ore pyrite yielded an isochron age of 132.2 ± 2.1 Ma (2σ, MSWD = 2.0, n = 4), which is roughly coincidental with the age of the granite porphyry and quartz porphyry (zircon U–Pb age: ca. 133 Ma). The age data, together with Pb, S, H, and O isotopic compositions, indicate a close temporal and possibly genetic relationship between mineralization and porphyry magmatism at Zhaiping. Geochemical and isotope data demonstrate that the Zhaiping sub-volcanic rocks were derived from partial melting of Proterozoic crustal sources and underwent fractionation of feldspars, monazite, and/or allanite. The 87Sr/86Sr ratios of pre-ore (Aph1) and syn-ore (Aph2) stage apatite are in the ranges of 0.71350 to 0.71441 and 0.71260 to 0.71328, respectively, which are distinct from those of the sub-volcanic intrusive rocks (0.7119–0.7125). The Sr isotope signature, together with lower fluid temperatures (

The large Hebaoshan gold deposit (41.5 t Au, average grade: 3.5 g/t) is located in a hitherto poorly documented gold province in the northeastern part of the South China Block. It is hosted by Precambrian metasedimentary rocks that experienced Triassic greenschist- to amphibolite-facies metamorphism. Three hydrothermal stages can be distinguished: quartz + sericite + pyrite + pyrrhotite (stage I), quartz + magnetite + sulfide (stage II), and quartz + carbonate + pyrite + hematite (stage III). Auriferous pyrite samples yielded a Rb-Sr isochron age of 234 ± 3 Ma (2σ, MSWD = 0.24), and ore-related hydrothermal sericite yielded a 40Ar-39Ar plateau age of 226.4 ± 2.0 Ma (2σ, MSWD = 1.01), which are distinctly younger than ca. 430 Ma granitic rocks in the mining district and older than 170–130 Ma granites in the region, ruling out any genetic link between granite emplacement and gold mineralization. The mineralizing fluid system can be described as carbonic-aqueous with low to moderate salinity (2.2–10.1 wt% NaCl equiv.) and medium temperature of 290 to 350 °C (stage I) and 230 to 280 °C (stage II). The δ18O quartz ranges from 13.3 to 15.4 ‰, and the δD values for fluid inclusions in quartz range from − 97 to − 60 ‰. The calcite has C-isotopes ranging from − 6.1 to − 3.8 ‰ and O-isotopes from 2.8 to 13.6 ‰. H-O-C isotope data are consistent with a metamorphic fluid derived from devolatilization of Neoproterozoic basement rocks during regional metamorphism in the Late Triassic Indosinian period. The δ34S values of sulfides for stages I, II, and III are 0.1 to 7.8 ‰, − 10.6 to 5.1 ‰, and − 18.9 to − 14.1 ‰, respectively, indicating an increase in oxygen fugacity during fluid ascent which resulted in more negative sulfur isotope values of sulfides and precipitation of gold. Pyrite separates have 206Pb/204Pb ratios of 17.340 to 17.687, 207Pb/204Pb ratios of 15.539 to 15.604, and 208Pb/204Pb ratios of 37.749 to 38.094. The S-Pb isotope data suggest derivation of S and Pb from the Precambrian metasedimentary country rocks. Auriferous pyrite yielded elevated 3He/4He ratios (0.78–1.46 Ra), which suggest a mantle component as can be expected from fluids derived from a subduction setting. It is concluded that Hebaoshan is an orogenic gold deposit that formed during Triassic flat-slab subduction of the paleo-Pacific plate beneath the South China Block and thus constitutes the first Triassic deposit of this type recognized in the coastal area of Southeast China.

The Shuangqishan gold deposit (>20t gold) is located in a hitherto poorly-documented gold province in the southeastern Cathaysia Block, South China. It is hosted by Neoproterozoic amphibolite-facies metamorphic rocks and consists of quartz-sulfide veins with distinct alteration haloes. Three stages of hydrothermal activity have been identified, and gold is mainly associated with veins of Stage II (quartz-pyrite±chalcopyrite). Gold occurs both as refractory gold hosted by pyrite and free gold enclosed in, or filling, microfractures of pyrite and quartz. U-Pb isotope dating of hydrothermal apatite from the Substage IIa veins yielded an age of 436.8 ± 7.6 Ma. The ore fluid was of carbonic-aqueous composition and low oxygen fugacity. Total homogenization temperatures in Substage IIa and IIb range from 270° to 310°C and 250° to 295°C, respectively. Variable CO2/H2O ratios indicate fluid unmixing under fluctuating pressures. Stage I quartz veins show evidence of ductile deformation and have δ18Ofluid and δD values of 10.3 to 11.2‰ and −67to −66‰, respectively, consistent with a metamorphic fluid. Stage II veins have slightly higher δ18O values of 10.9 to 13.7‰, with calculated δ18Ofluid values of 4.8 to 8.0‰. The 3He/4He ratios of pyrite are elevated (0.06–0.23 Ra) relative to crustal He reservoirs (

Unlike classic skarn-type scheelite deposits directly acquiring sufficient Ca2+ from surrounding limestones, all of the scheelite orebodies of the Shangfang tungsten (W) deposit occur mainly in amphibolite, and this provides a new perspective on the mineralization mechanism of W deposits. The ability of hydrothermal scheelite (CaWO4) to bind REE3+ in their Ca2+ crystal lattices makes it a useful mineral for tracing fluid-rock interactions in hydrothermal mineralization systems. In this study, the REE compositions of scheelite and some silicate minerals were measured systematically in-situ by laser ablation inductively coupled plasma mass spectrometry (LA-ICP-MS) to assess the extent of fluid-rock interactions for the Late Mesozoic quartz-vein-type Shangfang W deposits. According to the variations in CaO and REE among scheelite and silicate minerals, the amphibole and actinolite in amphibolite may be able to release large amounts of Ca2+ and REE3+ into the ore-forming fluids during chlorite alteration, which is critical for scheelite precipitation. Furthermore, an improved batch crystallization model was adopted for simulating the process of scheelite precipitation and fluid evolution. The results of both the in-situ measurements and model calculations demonstrate that the precipitation of early-stage scheelite with medium rare-earth elements (MREE)-rich and [Eu/Eu*]N 1. Even though the partition coefficient of REE is constant, the later-stage scheelite will also inherit a certain degree of MREE-depletion and [Eu/Eu*]N future from the residual fluids. As a common mineral, sheelite forms in various types of hydrothermal ore deposits (e.g., tungsten and gold deposits). Hence, the improved batch crystallization model is also possible for obtaining detailed information regarding fluid evolution for other types of hydrothermal deposits. The results from model calculations also illustrate that the Eu anomalies of scheelite are not an effective index correlated to oxygen fugacity of fluids but rather are dominantly controlled by the continuous precipitation of scheelite.

The Zhaiping Ag-Pb-Zn deposit (204 t Ag, average grade: 221.8 g/t) is located in the coastal area of the Cathaysia Block, Southeast China. Vein-type Ag-Pb-Zn orebodies are mainly hosted in the early Cretaceous volcanic and subvolcanic rocks, and structurally controlled by a group of NW-trending extensional faults. Ore-related hydrothermal alteration is well developed on both sides of the veins, dominated by silicic, phyllic, propylitic, and carbonate alteration. Mineralization can be divided into three stages: (1) the pre-ore quartz-pyrite stage, (2) syn-ore quartz-Ag-base metal stage, and (3) post-ore quartz-calcite stage. Microthermometric measurements of fluid inclusion assemblages in quartz, fluorite, sphalerite, and calcite from various hydrothermal stages reveal that from the pre-ore, syn-ore to post-ore stages, the homogenization temperatures range from 365 to 319 °C, from 317 to 222 °C, and from 233 to 172 °C, respectively. Fluid salinities range from 1.7 to 10.8 wt% NaCl equivalent. The microthermometric data indicate that the fluid cooling and fluid-rock interaction are two important mechanisms for ore precipitation. The δ34SV-CDT values of sulfide minerals (pyrite, sphalerite, galena, pyrrhotite and tetrahedrite) range from −1.9 to 6.2‰, and mostly between 1.0 and 4.5‰, consistent with a deep-seated magmatic sulfur source. Hydrogen and oxygen isotopic compositions of quartz indicate a primarily magmatic origin for the ore-forming fluids, and the proportion of meteoric water increased during the ore-forming processes. Post-ore stage calcite has δ13CV-PDB values of −2.8 to −0.8‰ and δ18OV-SMOW values of 4.2–6.4‰, corresponding to calculated values of fluids of −3.2 to −1.1‰, and −4.9 to −2.8‰, respectively. The carbon isotopes indicate a magmatic source for carbon but the oxygen isotopes indicate a significant contribution of meteoric water during calcite precipitation. We therefore proposed that the Zhaiping deposit is a typical mesothermal deposit that formed in an extensional environment related to the early Cretaceous subduction of the paleo-Pacific plate.

Background Altica (Coleoptera: Chrysomelidae) is a highly diverse and taxonomically challenging flea beetle genus that has been used as a model system in which to address questions related to host plant specialization, reproductive isolation, and ecological speciation. To further evolutionary studies in this important group, here we present a high-quality draft genome of a representative specialist, Altica viridicyanea, the first Alticinae genome and the fourth chrysomelid genome reported thus far. Results The genome is 864.8 Mb and consists of 4,490 scaffolds with a N50 size of 557 kb, which covered 98.6% complete and 0.4% partial insect Benchmarking Universal Single-Copy Orthologs. Repetitive sequences accounted for 62.9% of the assembly, and a total of 17,730 protein-coding gene models and 2,462 non-coding RNA models were predicted. To provide insight into host plant specialization of this monophagous species, we examined the key gene families involved in chemosensation, detoxification of plant secondary chemistry, and plant cell wall-degradation. Conclusions The high-quality genome assembled in this work provides an important resource for further studies on host plant adaptation and functionally affiliated genes. Moreover, this work also opens the way for comparative genomics studies among closely related Altica species, which may provide insight into the molecular evolutionary processes that occur during ecological speciation.

The Shangfang deposit is a recently discovered large-scale tungsten deposit (66,500 t at 0.23% WO3), which is located near the western boundary of the Southeastern Coastal Metallogenic Belt (i.e., Zhenghe&ndash, Dafu fault), and adjacent to the northeast of the Nanling Range Metallogenic Belt. Unlike many other W&ndash, Sn deposits in this region that occur within or near the granites, the orebodies in the Sangfang deposit all occur within the amphibolite of Palaeoproterozoic Dajinshan Formation and have no direct contact to the granite. In this study, we carry out a thermal ionization mass spectrometer (TIMS) Sm-Nd isotope analysis for the scheelites from the orebody, which yields a Sm&ndash, Nd isochron age of 157.9 &plusmn, 6.7 Ma (MSWD = 0.96). This age is in good agreement with the previously published zircon U&ndash, Pb age (158.8 &plusmn, 1.6 Ma) for the granite and the molybdenite Re&ndash, Os age (158.1 &plusmn, 5.4 Ma) in the deposit. Previous studies demonstrated that the W&ndash, Sn deposits occurring between Southeastern Nanling Range and Coastal Metallogenic Belt mainly formed in the two periods of 160&ndash, 150 Ma and 140&ndash, 135 Ma, respectively. The microthermometry results of fluid inclusions in scheelite and quartz are suggestive of a near-isothermal (possibly poly-baric) mixing between two fluids of differing salinities. The H&ndash, O isotope results illustrate that the ore-forming fluids are derived from magma and might be equilibrated with metamorphic rocks at high temperature. The Jurassic granite pluton should play a critical role for the large hydrothermal system producing the Shangfang W deposit. Furthermore, the negative &epsilon, Nd(t) of &minus, 14.6 obtained in the Shanfang scheelite suggests for the involvement of the deep crustal materials. In general, subduction of the paleo-Pacific plate caused an extensional tectonic setting with formation of the Shangfang granites and related W mineralization, the geological background of which is similar to other W deposits in the Nanling Range Metallogenic Belt.

Scanning tunneling microscopic images of doped polyaniline (PANI) with HCl are presented. Parallel chains with average separation of 0.4 nm are clearly visible, and the measured distance between the nearest two maxima in the polymer chain is about 1.04 nm. Molecular-mechanic calculations were used to optimize the conformation of a model polyaniline chain, and have yielded numerical values which agree well with measurements taken from the STM images.

To identify the genetic factors influencing complex diseases is a challenging problem. With the development of several technologies, such as large-scale genome sequencing, gene chips and mass spectrometry, and the successful completion of the first phase of International HapMap Project, it is feasible to explore the associations between hundreds of polymorphisms in the human genome, even the whole genome, and complex diseases in populations with large number of samples. The present paper briefly describes the results of the International HapMap Project, the merging whole-genome association study, and some new methods applicable to data including multiple loci.

Staphylococcus epidermidis strains are diverse in their pathogenicity; some are invasive and cause serious nosocomial infections, whereas others are non-pathogenic commensal organisms. To analyse the implications of different virulence factors in Staphylococcus epidermidis infections, the complete genome of Staphylococcus epidermidis strain ATCC 12228, a non-biofilm forming, non-infection associated strain used for detection of residual antibiotics in food products, was sequenced. This strain showed low virulence by mouse and rat experimental infections. The genome consists of a single 2499 279 bp chromosome and six plasmids. The chromosomal G + C content is 32.1% and 2419 protein coding sequences (CDS) are predicted, among which 230 are putative novel genes. Compared to the virulence factors in Staphylococcus aureus, aside from delta-haemolysin and beta-haemolysin, other toxin genes were not found. In contrast, the majority of adhesin genes are intact in ATCC 12228. Most strikingly, the ica operon coding for the enzymes synthesizing interbacterial cellular polysaccharide is missing in ATCC 12228 and rearrangements of adjacent genes are shown. No mec genes, IS256, IS257, were found in ATCC 12228. It is suggested that the absence of the ica operon is a genetic marker in commensal Staphylococcus epidermidis strains which are less likely to become invasive.

We have identified and characterized a novel human serine-arginine-rich (SR) splicing regulatory protein 508 (SRrp508) gene that is related to other members of the growing SR superfamily, but only homologous to rat (Rattus norvegicus) serine-arginine-rich splicing regulatory protein 86 (SRrp86) gene. The full-length cDNA of 3811 bp for human SRrp508 was cloned through a blast search of public databases following the identification of a cDNA contig of 658 bp obtained by EST assembly with full robotization in supercomputer in large-scale. Structurally, human SRrp508 encodes a polypeptide of 508 amino acids, which contains a single amino-terminal RNA recognition motif (RRM) and two carboxy-terminal domains rich in serine-arginine dipeptides that are highly conserved among other members of the SR superfamily. The conserved SR and RRM domains emphasize the biological importance of this gene. The SRrp508 gene, which contains 12 exons ranging from 0.096 to 2.093 kb and 11 introns ranging from 0.14 to 5.153 kb, is mapped to the human cytogenetic region 5q11.2-q12.1 using the bioinformatic analysis, and it does not link to any other genes. Furthermore, we have experimentally cloned and sequenced a cDNA fragment of 1680 bp containing the full-length ORF of 1527 bp in this novel human gene by RT-PCR from the single-stranded human pancreas cDNA library (Clontech), which is fully identical with that of the in silico cloning determined by the nucleotide sequencing. Thus, we in silico cloned his gene with GenBank accession number of AF459094 identified solely by bioinformatic analysis of the nucleotide and protein. This novel gene has promotors, TATA-box, several stop codons in the upstream of ORF, and PolyA signal in the downstream of ORF. Based on the above results, it can be concluded that we have obtained a complete novel human gene. The gene sequence exhibits good overall homology to that of rat SRrp86 gene, with 84% and 86% identity over the full-length nucleotide and protein, respectively, and with 96% and 86% identity over the serine-rich domain (RS) or arginine-rich domain (RA), respectively. The full-length sequence exhibits little overall homology to any other known protein at either the nucleotide or the amino acid level. The other two most closely related proteins, with 34% and 35% identity over the full-length protein, respectively, or with 51% and 54% identity over the full-length nucleotide of ORF, respectively, are drosophila serine-arginine-rich protein 54 (SRp54) and human arginine-rich nuclear protein 54 (p54). When comparisons are restricted to the RS or RA domains, the percent identity increased for both SRp54 and p54 are 44% and 54% or 38% and 43%, respectively. These results well demonstrate that only the novel human protein of 508 amino acids cloned is the human homolog of rat SRrp86, thus correcting the standpoint made by Barnard and Patton (Barnard DC, Patton JG. Identification and Characterization of a Novel Serine-Arginine-Rich Splicing Regulatory Protein. Molecular and Cellular Biology, 2000, 20(9): 3049-3057) that human arginine-rich nuclear protein 54 (p54) is the human homolog of the rat SRrp86, and suggesting that human SRrp508 is a new member of this growing superfamily of SR proteins. SRrp508 has an extensive expression profile, and may be a transcriptional factor. On the basis of its sequence and functional properties, we have named this protein SRrp508 for SR-related splicing regulatory protein of 508 amino acids. In summary, by combining bioinformatic analysis with experimental verification, we have successfully cloned the human cDNA homolog of rat SRrp86, which is verified by a series of theoretical and experimental evidence. The HGNC has just given SRrp508 gene entry the nomenclature information containing APPROVED SYMBOL: SFRS12; NAME: splicing factor, arginine/serine-rich 12; and ALIAS: DKFZp564B176, SRrp86. We have cloned this gene for near one year with no person landing the GenBank for registering the same gene. Our newly-established technique line will be helpful in discovering much more novel human genes.

The quantum-chemical calculation of an entire molecule of hagfish insulin was done by the ENFC method in which the matrix elements were calculated at the ab initio level using a minimal basis set with simulation of the aqueous solution environment. The ac conductivity for hagfish insulin was also calculated at the ab initio level by random walk theory. All the results were compared with those of pig insulin. It is shown that the reduction of HOMOs and LOMOs localized on the active sites of hagfish insulin agrees with the decrease in the biological reactivity of the insulin. The analysis of primary hopping events showed that a different sequence could influence the biological activity of insulin through the distribution of the hopping centers and the quantities of the hopping frequencies. The curve of the frequency versus ac conductivity of hagfish insulin shows that the different amino acid sequences of proteins influence the hopping conductivity. However, the electronic properties of native proteins are dominated by the three-dimensional conformations. Finally, the electronic mechanism of trans-membrane signal transforms by insulin and its receptor, which had been proposed by Ye and Ladik, was clearly described.

In order to elucidate a life system at molecular and submolecular levels, it is necessary to apply physical concepts and methods to biology. To perform computer simulations of motions of biomolecules, we must calculate the intra- and interaction energies in terms of empirical, semiempirical or ab initio methods. Using CNDO/2, we have studied the interaction between chiral molecules[1,2] and the rotation barrier of bases in nucleic acid[3,4]. Owing to the difficulties in applying CNDO and ab initio methods to macromolecules, we adopted the atom-atom potentials developed by E. Clementi to deal with polypeptide and oligonucleotide[5,6]. As neuropeptides are of interest, we calculated the interaction between leu-enkephalin and water molecule.