34 results on '"Ryohei Kokawa"'
Search Results
2. Photoinduced Ligand Release from a Silicon Phthalocyanine Dye Conjugated with Monoclonal Antibodies: A Mechanism of Cancer Cell Cytotoxicity after Near-Infrared Photoimmunotherapy
- Author
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Kazuhide Sato, Kanta Ando, Shuhei Okuyama, Shiho Moriguchi, Tairo Ogura, Shinichiro Totoki, Hirofumi Hanaoka, Tadanobu Nagaya, Ryohei Kokawa, Hideo Takakura, Masayuki Nishimura, Yoshinori Hasegawa, Peter L. Choyke, Mikako Ogawa, and Hisataka Kobayashi
- Subjects
Chemistry ,QD1-999 - Published
- 2018
- Full Text
- View/download PDF
3. Let's Start Diversity Promotion in Journal VSS
- Author
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Akiko N. ITAKURA and Ryohei KOKAWA
- Published
- 2022
- Full Text
- View/download PDF
4. Nanometer-Scale Distribution of a Lubricant Modifier on Iron Films: A Frequency-Modulation Atomic Force Microscopy Study Combined with a Friction Test
- Author
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Hiroshi Onishi, Shiho Moriguchi, Akira Sasahara, Teppei Tsujimoto, and Ryohei Kokawa
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Materials science ,Scale (ratio) ,Atomic force microscopy ,General Chemical Engineering ,Chemical polarity ,General Chemistry ,Article ,Physics::Fluid Dynamics ,Condensed Matter::Soft Condensed Matter ,Chemistry ,Adsorption ,Polar ,Nanometre ,Physics::Chemical Physics ,Lubricant ,Composite material ,Frequency modulation ,QD1-999 - Abstract
Liquid lubricants used in mechanical applications are low-vapor-pressure hydrocarbons modified with a small quantity of polar compounds. The polar modifiers adsorbed on the surface of sliding solids dominate the friction properties when the sliding surfaces are in close proximity. However, a few methods are available for the characterization of the adsorbed modifiers of a nanometer-scale thickness. In this study, we applied frequency-modulation atomic force microscopy to evaluate the vertical and lateral density distributions of the adsorbed modifier in a real lubricant, namely, poly-α-olefin (PAO) modified with an orthophosphoric acid oleyl ester. The liquid-induced force on the probing tip was mapped on a plane that was perpendicular to the lubricant–iron interface with a force sensitivity on the order of 10 pN. The PAO in the absence of the ester modifier was directly exposed to the film, which produced a few liquid layers parallel to the film surface with layer-to-layer distances of 0.6–0.7 nm. A monomolecular layer of the modifier was intermittently adsorbed with increasing ester concentration in the bulk lubricant, with complete coverage seen at 20 ppm. The C18H35 chains of the oleyl esters fluctuating in the lubricant produced a repulsive force on the tip, which monotonically decayed with the tip-to-surface distance. The dynamic friction coefficient of sliding steel–lubricant–steel interfaces, which was separately determined using a friction tester, was compared with the force map determined on the iron film immersed in the corresponding lubricant. The complete monomolecular layer of the ester modifier on the static lubricant–iron boundary is a requirement for achieving smooth and stable friction at the sliding interface.
- Published
- 2019
5. Photoinduced Ligand Release from a Silicon Phthalocyanine Dye Conjugated with Monoclonal Antibodies: A Mechanism of Cancer Cell Cytotoxicity after Near-Infrared Photoimmunotherapy
- Author
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Hisataka Kobayashi, Ryohei Kokawa, Tadanobu Nagaya, Yoshinori Hasegawa, Peter L. Choyke, Kanta Ando, Shiho Moriguchi, Tairo Ogura, Shinichiro Totoki, Mikako Ogawa, Hideo Takakura, Shuhei Okuyama, Masayuki Nishimura, Kazuhide Sato, and Hirofumi Hanaoka
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0301 basic medicine ,Aqueous solution ,Water flow ,Chemistry ,General Chemical Engineering ,technology, industry, and agriculture ,Photoimmunotherapy ,General Chemistry ,Conjugated system ,Ligand (biochemistry) ,03 medical and health sciences ,030104 developmental biology ,0302 clinical medicine ,030220 oncology & carcinogenesis ,Cancer cell ,Biophysics ,Cytotoxicity ,QD1-999 ,Conjugate ,Research Article - Abstract
Photochemical reactions can dramatically alter physical characteristics of reacted molecules. In this study, we demonstrate that near-infrared (NIR) light induces an axial ligand-releasing reaction, which dramatically alters hydrophilicity of a silicon phthalocyanine derivative (IR700) dye leading to a change in the shape of the conjugate and its propensity to aggregate in aqueous solution. This photochemical reaction is proposed as a major mechanism of cell death induced by NIR photoimmunotherapy (NIR-PIT), which was recently developed as a molecularly targeted cancer therapy. Once the antibody-IR700 conjugate is bound to its target, activation by NIR light causes physical changes in the shape of antibody antigen complexes that are thought to induce physical stress within the cellular membrane leading to increases in transmembrane water flow that eventually lead to cell bursting and necrotic cell death., Photoinduced ligand-release reaction of silicon phthalocyanine works as a highly selective “death switch” on targeted cells which antibody-IR700 conjugates bind by inducing damage on cell membrane.
- Published
- 2018
6. Variability in Microplate Surface Properties and Its Impact on ELISA
- Author
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Enoch Ming Wei Ng, Shera Lilyanna, Yan Xia Ng, Siew Pang Chan, Tuck Wah Ng, Shiho Moriguchi, A. Mark Richards, P.C. Jenny Chong, So Hung Huynh, Oi Wah Liew, and Ryohei Kokawa
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Reproducibility ,Chromatography ,medicine.diagnostic_test ,Chemistry ,Atomic force microscopy ,Analytical chemistry ,02 engineering and technology ,General Medicine ,Elisa assay ,010402 general chemistry ,021001 nanoscience & nanotechnology ,01 natural sciences ,0104 chemical sciences ,law.invention ,Contact angle ,Sessile drop technique ,law ,Immunoassay ,Surface roughness ,medicine ,0210 nano-technology ,Chemiluminescence - Abstract
Background Microplate-based immunoassays are widely used in clinical and research settings to measure a broad range of biomarkers present in complex matrices. Assay variability within and between microplates can give rise to false-negative and false-positive results leading to incorrect conclusions. To date, the contribution of microplates to this variability remains poorly characterized and described. This study provides new insights into variability in immunoassays attributable to surface characteristics of commercial microplates. Methods Well-to-well assay variation in γ-treated and nontreated 96-well opaque microplates suitable for chemiluminescence assays was determined by use of a validated sandwich ELISA. Microplate surface characteristics were assessed by sessile drop contact angle measurements, scanning electron microscopy, energy dispersive x-ray spectroscopy, and atomic force microscopy. Results All microplate types tested exhibited vendor-specific assay response profiles; and “rogue” plates with very high intraassay variation and deviant mean assay responses were found. Within-plate, location-dependent bias in assay responses and variability in well contact angle were also observed. We demonstrate substantial differences in well-surface properties with putative effects on protein-coating reproducibility and hence consistency in immunoassay responses. A surface “cleaning” effect on manufacturing residues was attributed to γ-irradiation, and treated microplates manifest increased polar functionalities, surface roughness, and assay responses. Conclusions Our data suggest that tighter control of variability in surface roughness, wettability, chemistry, and level of residual contaminants during microplate preparation is warranted to improve consistency of ELISA assay read out.
- Published
- 2018
- Full Text
- View/download PDF
7. Report on Practical Microscopy Seminar 2019
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Akira Chikamatsu, Keisuke Sagisaka, Ryohei Kokawa, Yasushi Hirose, Akitoshi Shiotari, and Makoto Minohara
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Materials science ,Microscopy ,Nanotechnology - Published
- 2019
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8. Atom-Resolved Analysis of an Ionic KBr(001) Crystal Surface Covered with a Thin Water Layer by Frequency Modulation Atomic Force Microscopy
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Masahiko Tomitori, Noriaki Oyabu, Toyoko Arai, Kei Kobayashi, Hirofumi Yamada, Ryohei Kokawa, Masashi Koshioka, Kouhei Abe, and Masahiro Ohta
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Cantilever ,Chemistry ,Electrostatic force microscope ,Analytical chemistry ,Ionic bonding ,Surfaces and Interfaces ,Conductive atomic force microscopy ,Condensed Matter Physics ,Ion ,Crystal ,Adsorption ,Atom ,Electrochemistry ,General Materials Science ,Spectroscopy - Abstract
An ionic KBr(001) crystal surface covered with a thin water layer was observed with a frequency modulation atomic force microscope (FM-AFM) with atomic resolution. By immersing only the tip apex of the AFM cantilever in the thin water layer, the Q-factor of the cantilever in probing the solid-liquid interface can be maintained as high as that of FM-AFM operation in air, leading to improvement of the minimum detection of a differential force determined by the noise. Two types of images with atom-resolved contrast were observed, possibly owing to the different types of ions (K(+) or Br(-)) adsorbed on the tip apex that incorporated into the hydration layers on the tip and on the sample surface. The force-distance characteristics at the solid-water interface were analyzed by taking spatial variation maps of the resonant frequency shift of the AFM cantilever with the high Q-factor. The oscillatory frequency shift-distance curves exhibited atomic site dependence. The roles of hydration and the ions on the tip and on the sample surface in the measurements were discussed.
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- 2015
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9. Entropy-Controlled 2D Supramolecular Structures of N,N′-Bis(n-alkyl)naphthalenediimides on a HOPG Surface
- Author
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Yusuke Miyake, Takuji Ogawa, Toshi Nagata, Masashi Yamazaki, Ryohei Kokawa, Hirofumi Tanaka, and Masahiro Ohta
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chemistry.chemical_classification ,Chemistry ,Enthalpy ,General Engineering ,Supramolecular chemistry ,General Physics and Astronomy ,Crystallography ,Molecular dynamics ,Chain length ,General Materials Science ,Lamellar structure ,Alkyl ,Self-avoiding walk ,Entropy (order and disorder) - Abstract
The two-dimensional supramolecular structures of a series of N,N'-bis(n-alkyl)naphthalenediimides (NDIs), whose chain lengths span from C3 to C18, at a liquid-HOPG surface interface, studied by STM and FM-AFM, are assigned with the help of molecular dynamics/molecular mechanics calculations to demonstrate that the C3- and C4-NDIs show lamellar structures, the C4- to C12-NDIs show honeycomb (KAGOME) structures, and the C14- to C18-NDIs show lamellar structures again. The change in supramolecular structure depending on chain length can be explained semiquantitatively by the balance of entropy and enthalpy terms to show the importance of "self-avoiding walk" of the alkyl chain in entropy terms.
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- 2012
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10. Kelvin Probe Force Microscopy Study of a Pt/TiO2 Catalyst Model Placed in an Atmospheric Pressure of N2 Environment
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Akira Sasahara, Ryohei Kokawa, Hiroshi Onishi, and Masahiro Ohta
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Kelvin probe force microscope ,Microscope ,Atmospheric pressure ,nanotechnology ,Chemistry ,Organic Chemistry ,Nanoparticle ,scanning probe microscopy ,Nanotechnology ,General Chemistry ,Full Papers ,Platinum nanoparticles ,electron transfer ,Biochemistry ,law.invention ,Scanning probe microscopy ,heterogeneous catalysis ,Chemical engineering ,law ,Microscopy ,Work function ,supported catalysts - Abstract
A catalyst model comprising platinum nanoparticles deposited on a TiO(2)(110) wafer was prepared in a vacuum, transferred in air, and characterized with a Kelvin probe force microscope placed in a N(2) environment. The topography and local work function of individual nanoparticles were observed with single-nanometer resolution in the N(2) environment of one atmosphere pressure. Some nanoparticle presented positive shifts of work function relative to that of the TiO(2) surface, while the others showed negative shifts. This finding suggests heterogeneous properties of the nanoparticles exposed to air and then N(2). The ability of the advanced microscope was demonstrated in observing the work function of metal nanoparticles on a metal oxide support even in the presence of vapor environments.
- Published
- 2012
11. Hardness Evaluation of Ultra Thin Films
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Tadashi Inoue, Hideo Nakajima, and Ryohei Kokawa
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Materials science ,General Engineering ,Composite material ,Thin film - Published
- 2012
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12. Report on Practical Microscopy Seminar 2018
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Makoto Minohara, Akitoshi Shiotari, Ryohei Kokawa, and Keisuke Sagisaka
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Materials science ,Microscopy ,Nanotechnology - Published
- 2018
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13. Aqueous Solution Structure over α-Al2O3(011̅2) Probed by Frequency-Modulation Atomic Force Microscopy
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Kei Kobayashi, Kazuyuki Watanabe, Takumi Hiasa, Masahiro Ohta, Noriaki Oyabu, Hirofumi Yamada, Hiroshi Onishi, Ryohei Kokawa, and Kenjiro Kimura
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General Energy ,Aqueous solution ,Materials science ,Atomic force microscopy ,Mole ,Analytical chemistry ,Wafer ,Physical and Theoretical Chemistry ,Frequency modulation ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials - Abstract
An α-Al2O3(0112) wafer was immersed in an aqueous KCl solution of 1 mol L−1 and observed with a frequency-modulation atomic force microscope. The tip−surface force was precisely determined as a fu...
- Published
- 2010
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14. Relation between etch-pit morphology and step retreat velocity on a calcite surface in aspartic acid solution
- Author
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Hiroyuki Kagi, Ryohei Kokawa, Toru Yoshino, and Natsumi Kamiya
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Calcite ,Morphology (linguistics) ,Atomic force microscopy ,Chemistry ,Condensed Matter Physics ,Inorganic Chemistry ,chemistry.chemical_compound ,Crystallography ,Aspartic acid ,Materials Chemistry ,Confocal laser scanning microscopy ,Surface structure ,Solubility ,Dissolution - Abstract
Effects of l -aspartic acid ( l -Asp) on dissolution of calcite were investigated. The step retreat velocity and dissolution rate of calcite were measured simultaneously using an AFM flow-through system. The etch-pit morphology of calcite was observed using confocal laser scanning microscopy. Results show that the etch-pit morphologies changed drastically depending on the l -Asp concentration ([ l -Asp]) in the order of rhomboidal, pentagonal, and triangular (not perfectly, but retaining an extra step). The change in obtuse step directions and appearance of the [0 1 0] step triggered these morphological changes. Addition of l -Asp accelerated all step retreats at [ l -Asp] l -Asp on the diffusive barrier. In contrast, at [ l -Asp]>0.01 M, l -Asp inhibited the retreats of obtuse steps and [0 1 0] step, although the retreat velocities of acute steps were constant irrespective of [ l -Asp]. These results suggest that the directional changes and the inhibition of retreat velocities of obtuse steps were attributed to the generation of [ 4 1 1] and [4 5 1 ] steps caused by l -Asp. Moreover, we confirmed the preferential effects of l -Asp on the [4 8 1 ]+ to [ 4 4 1]± step edge, and proposed the preferential effects of l -Asp on the [ 4 1 1] to [4 5 1 ] step edge.
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- 2010
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15. Round-robin measurements of 100- and 60-nm scales among a deep-ultraviolet laser diffractometer, a scanning electron microscope and various atomic force microscopes
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Ichiko Misumi, Osamu Sato, Shin-ichi Kitamura, Masatoshi Yasutake, Ryohei Kokawa, Nobuo Kojima, Toru Fujii, Jun-ichiro Kitta, Tomizo Kurosawa, Ryuichiro Tamochi, and Satoshi Gonda
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Materials science ,Microscope ,Scanning electron microscope ,business.industry ,Applied Mathematics ,Grating ,Laser ,law.invention ,Metrology ,Nanometrology ,Optics ,law ,Calibration ,business ,Instrumentation ,Engineering (miscellaneous) ,Diffractometer - Abstract
An intercomparison of nanometric lateral scales, which are special one-dimensional (1D) grating standards with sub-hundred-nanometre pitches, among a deep-ultraviolet (DUV) laser diffractometer, a critical dimension scanning electron microscope (CD-SEM) and different types of atomic force microscope (AFM) was performed. The reference value and its expanded uncertainty were provided by the National Metrology Institute of Japan (NMIJ) using an atomic force microscope with differential laser interferometers (DLI-AFM). The consistency of the measurement results obtained using the DUV laser diffractometer, CD-SEM and some AFMs was satisfactory; however, that in the measurement results obtained using other AFMs was unsatisfactory. An improvement in AFM calibration technology using nanometrological standards is required for both AFM manufacturers and AFM users, including metrology institutes.
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- 2007
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16. Development of a 'Built-in' Scanning Near Field Microscope Head for an Atomic Force Microscope System and Stress Mapping of an Al2O3/ZrO2 Eutectic Composite
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Hiroyuki Kagi, Tatsuo Nakagawa, Munenori Nakai, Ryohei Kokawa, Satoshi Fukura, and Kazumasa Sugiyama
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Materials science ,Microscope ,business.industry ,Atomic and Molecular Physics, and Optics ,Photon counting ,law.invention ,Polychromator ,Stress (mechanics) ,Optics ,Optical microscope ,law ,Near-field scanning optical microscope ,business ,Anisotropy ,Eutectic system - Abstract
We constructed a scanning near-field optical microscope (SNOM) on a commercially available atomic force microscopy (AFM) apparatus (SPM-9500J2; Shimadzu Corp.) to measure the stress distribution in ceramic composite materials. Features of our SNOM system are: (1) a compact SNOM head substituted for the original AFM head; (2) a wide scanning range (125 × 125 μm2) inherited from the original scanner; (3) use of conventional shear-force regulation; (4) an optical system for the illumination-collection (I-C) mode; (5) excitation by a 488 nm line of an Ar-ion laser, and (6) light detection by photon counting or a polychromator equipped with an electronically cooled charge coupled device (CCD). This SNOM system was used to measure the surface structure and stress distribution of an Al2O3/ZrO2 eutectic composite. We simultaneously measured topographic images and fluorescence spectra of an Al2O3/ZrO2 eutectic composite. We estimated its peak intensity, peak position, and peak width from the fluorescence spectrum during scanning, which respectively correspond to the abundance of Al2O3, stress in the grain, and the anisotropy of that stress. Mapping images showed that the stress and its anisotropy were weaker in the center of the Al2O3 grain than its boundary between Al2O3 and ZrO2. That observation suggests that Al2O3 underwent intense anisotropic stress induced by volume expansion in the phase transition of ZrO2 from the cubic phase to the monoclinic phase during preparation.
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- 2006
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17. Growth shape of isotactic polystyrene crystals in thin films
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Ken Taguchi, Kunihide Izumi, Hideki Miyaji, Yoshihisa Miyamoto, Ryohei Kokawa, and Akitaka Hoshino
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Materials science ,Polymers and Plastics ,Organic Chemistry ,FOS: Physical sciences ,Crystal growth ,Condensed Matter - Soft Condensed Matter ,Branching (polymer chemistry) ,law.invention ,Crystal ,chemistry.chemical_compound ,chemistry ,law ,Polymer chemistry ,Materials Chemistry ,Soft Condensed Matter (cond-mat.soft) ,Lamellar structure ,Polystyrene ,Growth rate ,Composite material ,Crystallization ,Thin film - Abstract
The crystal growth of isotactic polystyrene (it-PS) is investigated in very thin, 11 nm thick films. The it-PS crystals grown in the thin films show quite different morphology from that in the bulk. With decreasing crystallization temperature, the branching morphology in a diffusion field appears: dendrite and compact seaweed. The branching morphology is formed through a morphological instability caused by the gradient of film thickness around a crystal; the thicker the film thickness, the larger the lateral growth rate of crystals. Regardless of the morphological change, the growth rate as well as the lamellar thickness depends on crystallization temperature as predicted by the surface kinetics., 7 pages, 8 figures (EPS), LaTeX, accepted for publiaction in Polymer
- Published
- 2001
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18. Characterization of Imaging of Localized Surface Reactions with Probe Microscopy. Scanning Probe Microscopy in Controlled Environment
- Author
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Masahiro Ohta and Ryohei Kokawa
- Subjects
Conventional transmission electron microscope ,Scanning Hall probe microscope ,Microscope ,Materials science ,business.industry ,General Engineering ,Scanning confocal electron microscopy ,Scanning capacitance microscopy ,law.invention ,Scanning probe microscopy ,law ,Microscopy ,Scanning ion-conductance microscopy ,Optoelectronics ,business - Published
- 2000
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19. Variability in Microplate Surface Properties and Its Impact on ELISA.
- Author
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Lilyanna, Shera, Enoch Ming Wei Ng, Shiho Moriguchi, Siew Pang Chan, Ryohei Kokawa, So Hung Huynh, Chong, P. C. Jenny, Yan Xia Ng, Richards, A. Mark, Tuck Wah Ng, and Oi Wah Liew
- Subjects
ENZYME-linked immunosorbent assay ,IMMUNOASSAY ,MICROPLATES ,ERROR probability ,CLINICAL pathology - Abstract
Background: Microplate-based immunoassays are widely used in clinical and research settings to measure a broad range of biomarkers present in complex matrices. Assay variability within and between microplates can give rise to false-negative and false-positive results leading to incorrect conclusions. To date, the contribution of microplates to this variability remains poorly characterized and described. This study provides new insights into variability in immunoassays attributable to surface characteristics of commercial microplates. Methods: Well-to-well assay variation in γ-treated and nontreated 96-well opaque microplates suitable for chemiluminescence assays was determined by use of a validated sandwich ELISA. Microplate surface characteristics were assessed by sessile drop contact angle measurements, scanning electron microscopy, energy dispersive x-ray spectroscopy, and atomic force microscopy. Results: All microplate types tested exhibited vendor-specific assay response profiles; and "rogue" plates with very high intraassay variation and deviant mean assay responses were found. Within-plate, location-dependent bias in assay responses and variability in well contact angle were also observed. We demonstrate substantial differences in well-surface properties with putative effects on protein-coating reproducibility and hence consistency in immunoassay responses. A surface "cleaning" effect on manufacturing residues was attributed to γ-irradiation, and treated microplates manifest increased polar functionalities, surface roughness, and assay responses. Conclusions: Our data suggest that tighter control of variability in surface roughness, wettability, chemistry, and level of residual contaminants during microplate preparation is warranted to improve consistency of ELISA assay read out. [ABSTRACT FROM AUTHOR]
- Published
- 2018
- Full Text
- View/download PDF
20. Practical Seminar on Microscopy 2017
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Keisuke Sagisaka, Akira Chikamatsu, Ryohei Kokawa, and Shinya Ohno
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Materials science ,Microscopy ,Nanotechnology - Published
- 2017
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21. Measurement of Aspherical Form of Lens by Scanning Electron Microscope
- Author
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Ryohei Kokawa, Hisayoshi Sato, and Masanori Ohori
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Conventional transmission electron microscope ,Materials science ,Microscope ,Scanning electron microscope ,business.industry ,General Engineering ,law.invention ,Lens (optics) ,Optics ,law ,Scanning transmission electron microscopy ,Cathode ray ,Electron microscope ,business ,Environmental scanning electron microscope - Published
- 1992
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22. Van der Pol Type Self-Excited Microcantilever and Its Application to AFM
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Takashi Someya, Masahiro Ohta, Ryohei Kokawa, Masaharu Kuroda, and Hiroshi Yabuno
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Van der Pol oscillator ,Nonlinear system ,Response Frequency ,Amplitude ,Atomic force microscopy ,Chemistry ,Quantum mechanics ,Physics::Atomic and Molecular Clusters ,Self excited ,Natural frequency ,Type (model theory) ,Atomic physics - Abstract
We propose a van der Pol type self-excited micro-cantilever probe for AFM (atomic force microscope). Because the response frequency of self-excited oscillators is its natural frequency, the equivalent natural frequency depending on the atomic force is easily measured from detecting the response frequency of the self-excited micro-cantilever probe. While the amplitude of the linear self-excited oscillator grows with time, it can be kept very small by the nonlinear effect as van ver Pol oscillator. Therefore, if the micro-cantilever probe has the same dynamics as that of van Pol oscillator, the contact of the micro-cantilever to the material surface is prohibited and non-contact mode AFM is realized. In the present study, we design a van der Pol type micro-cantilever for the application to the practical AFM system.Copyright © 2009 by ASME
- Published
- 2009
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23. Specific Interaction between GroEL and Denatured Protein Measured by Compression-Free Force Spectroscopy
- Author
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Hideo Arakawa, Ryohei Kokawa, Takeshi Ito, Atsushi Ikai, Hiroshi Sekiguchi, and Hideki Taguchi
- Subjects
Compressive Strength ,Macromolecular Substances ,Biophysics ,macromolecular substances ,Microscopy, Atomic Force ,Chaperonin ,Adenosine Triphosphate ,Molecule ,Neutral ph ,Binding Sites ,Chemistry ,Atomic force microscopy ,Force spectroscopy ,Proteins ,Chaperonin 60 ,Hydrogen-Ion Concentration ,GroEL ,Elasticity ,Pepsin A ,Crystallography ,enzymes and coenzymes (carbohydrates) ,Molecular Probes ,biological sciences ,bacteria ,Mica ,Stress, Mechanical ,Molecular probe ,Protein Binding - Abstract
We investigated the interaction between GroEL and a denatured protein from a mechanical point of view using an atomic force microscope. Pepsin was bound to an atomic force microscope probe and used at a neutral pH as an example of denatured proteins. To measure a specific and delicate interaction force, we obtained force curves without pressing the probe onto GroEL molecules spread on a mica surface. Approximately 40 pN of tensile force was observed for approximately 10 nm while pepsin was pulled away from the chaperonin after a brief contact. This length of force duration corresponding to the circumference of GroEL's interior cavity was shortened by the addition of ATP. The relation between the observed mechanical parameters and the chaperonin's refolding function is discussed.
- Published
- 2003
24. Crystal Growth of Isotactic Polystyrene in Ultrathin Films : Film Thickness Dependence
- Author
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Hideki Miyaji, Yoshihisa Miyamoto, Ken Taguchi, Akitaka Hoshino, Ryohei Kokawa, and Kunihide Izumi
- Subjects
Materials science ,Polymers and Plastics ,Characteristic length ,FOS: Physical sciences ,Crystal growth ,General Chemistry ,Condensed Matter - Soft Condensed Matter ,Condensed Matter Physics ,Branching (polymer chemistry) ,chemistry.chemical_compound ,chemistry ,Tacticity ,Polymer chemistry ,Materials Chemistry ,Soft Condensed Matter (cond-mat.soft) ,Lamellar structure ,Polystyrene ,Growth rate ,Composite material ,Thin film - Abstract
The film thickness dependence of crystal growth is investigated for isotactic polystyrene (it-PS) in thin films, the thickness of which is from 20nm down to 4nm. The single crystals of it-PS grown at 180 in the ultrathin films show the morphology typical in the diffusion-controlled growth: dense branching morphology (DBM), fractal seeweed (FS). The characteristic length of the morphology, i.e. the width of the branch, increases with decreasing film thickness. The thickness dependence of the growth rate of crystals shows a crossover around the lamellar thickness of the crystal, 8 nm. The thickness dependences of the growth rate and morphology are discussed in terms of the diffusion of chain molecules in thin films., Comment: Latex2e files; 7 pages, 6 figures; submitted to J. Macro. Sci. Phys
- Published
- 2001
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25. 20607 Amplitude Control of AFM Probe Cantilever Utilizing Nonlinear Vibration
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Hiroshi Yabuno, Masahiro Ohta, Masaharu Kuroda, Takashi Someya, and Ryohei Kokawa
- Subjects
Materials science ,Cantilever ,Atomic force microscopy ,Acoustics ,Nonlinear vibration ,Amplitude control - Published
- 2010
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26. M6-1 Non-Contact Observation in Liquid with van der Pot-Type FM-AFM (M6 Bio Sensor and System)
- Author
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Takashi Someya, Hiroshi Yabuno, Masaharu Kuroda, Masahiro Ohta, and Ryohei Kokawa
- Subjects
Materials science ,Atomic force microscopy ,Bio sensor ,Nanotechnology - Published
- 2009
- Full Text
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27. Molecular resolution investigation of tetragonal lysozyme (110) face in liquid by frequency-modulation atomic force microscopy
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Tsuyoshi Inoue, Ryohei Kokawa, Hiroaki Adachi, Hiroyoshi Matsumura, Hirofumi Yamada, Kazufumi Takano, Ryota Murai, Kei Kobayashi, Seizo Morita, Masayuki Abe, Satoshi Murakami, Ken Nagashima, Noriaki Oyabu, Yusuke Mori, and Masahiro Ohta
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Diffraction ,Quantitative Biology::Biomolecules ,Materials science ,Process Chemistry and Technology ,Analytical chemistry ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials ,Quantitative Biology::Subcellular Processes ,Crystallography ,chemistry.chemical_compound ,Tetragonal crystal system ,chemistry ,Face (geometry) ,X-ray crystallography ,Materials Chemistry ,Molecule ,Condensed Matter::Strongly Correlated Electrons ,Electrical and Electronic Engineering ,Lysozyme ,Protein crystallization ,Instrumentation ,Frequency modulation - Abstract
In order to determine the molecular structure by x-ray diffraction analysis, it is very important to grow high quality protein crystals. The molecular resolution imaging of soluble protein crystals such as the tetragonal lysozyme (110) face in saturated solution is demonstrated using frequency-modulation atomic force microscopy (FM-AFM). The surface structure of the (110) face and the crystallographic position of individual molecules were determined from molecular resolution images. For observation of protein crystals, FM-AFM is a favorable technique as an alternative to contact mode or amplitude-modulation AFM.
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- 2010
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28. Solution–TiO2Interface Probed by Frequency-Modulation Atomic Force Microscopy
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Kazuyuki Watanabe, Masahiro Ohta, Takumi Hiasa, Kei Kobayashi, Noriaki Oyabu, Kenjiro Kimura, Hiroshi Onishi, Hirofumi Yamada, and Ryohei Kokawa
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Kelvin probe force microscope ,Physics and Astronomy (miscellaneous) ,Chemistry ,General Engineering ,Nucleation ,Solvation ,General Physics and Astronomy ,Ionic bonding ,Conductive atomic force microscopy ,Chemical force microscopy ,Chemical physics ,Molecule ,Atomic physics ,Non-contact atomic force microscopy - Abstract
The topography and solvation structure of a solution–TiO2 interface were observed in the dark using highly sensitive, frequency-modulated atomic force microscopy (FM-AFM). The nucleation and growth of an ionic solute, KCl, in this study, were observed in constant frequency-shift topography. The force applied to the tip was determined as a function of tip–surface distance. Modulations were identified on some force curves and were found to be related to the site-specific density of water molecules.
- Published
- 2009
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29. Characterization of local electrical properties of polycrystalline silicon thin films and hydrogen termination effect by conductive atomic force microscopy
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Ryohei Kokawa, Yukiharu Uraoka, Takeshi Ito, Takashi Fuyuki, Emi Machida, and Hiroshi Ikenoue
- Subjects
Materials science ,Physics and Astronomy (miscellaneous) ,Silicon ,Hydrogen ,business.industry ,food and beverages ,chemistry.chemical_element ,Conductive atomic force microscopy ,engineering.material ,Thermal conduction ,Crystallography ,Polycrystalline silicon ,Semiconductor ,chemistry ,engineering ,Grain boundary ,Composite material ,business ,Electrical conductor - Abstract
We observed local electrical properties of polycrystalline silicon films by conductive atomic force microscopy. Moreover, we investigated the effects of hydrogen termination on the polycrystalline silicon films. Before hydrogen termination, conductive regions in grain disappeared with the repeated scanning of the cantilever, while conductive regions in grain boundary almost unchanged. It is considered that hopping conduction is a major electrical conduction mechanism at grain boundaries. After 5 min hydrogen termination, locally nonterminated regions were observed near grain boundaries. This suggests that hydrogen termination of the polycrystalline silicon does not randomly progress, and there are regions that cannot be easily inactivated near grain boundaries.
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- 2009
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30. Atom-Resolved Analysis of an Ionic KBr(001) CrystalSurface Covered with a Thin Water Layer by Frequency Modulation AtomicForce Microscopy.
- Author
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Toyoko Arai, Masashi Koshioka, Kouhei Abe, Masahiko Tomitori, Ryohei Kokawa, Masahiro Ohta, Hirofumi Yamada, Kei Kobayashi, and Noriaki Oyabu
- Published
- 2015
- Full Text
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31. Formation Mechanism of Incommensurate Epitaxial Crystals of Chloroiron(III) Derivative of Tetraphenylporphine on Alkali–Halide (001) Surfaces
- Author
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Kunihide Izumi, Tomohiro Takagi, Akitaka Hoshino, Hideki Miyaji, and Ryohei Kokawa
- Subjects
Surface diffusion ,Crystallography ,Lattice constant ,Materials science ,Amorphous carbon ,General Engineering ,General Physics and Astronomy ,Molecule ,Halide ,Mineralogy ,Epitaxy ,Alkali metal ,Amorphous solid - Abstract
We investigate the thickness dependence of the lattice constants of a chloroiron(III) derivative of tetraphenylporphine (ClTPPFe) epitaxial crystals grown on alkali–halide substrates, KCl, KBr and KI, in order to study the accommodation of the misfit strain, and do not observe any obvious dependence. Moreover, the orientational disturbance of the epitaxial crystals on the alkali halides and the formation of amorphous islands on an amorphous carbon film are observed. On the basis of these results, we propose the mechanism that the orientation of surface-diffusing molecules contributes significantly to the epitaxial growth of ClTPPFe on the alkali halides.
- Published
- 2001
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32. With respect to coefficient of linear thermal expansion, bacterial vegetative cells and spores resemble plastics and metals, respectively.
- Author
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Koichi Nakanishi, Akinori Kogure, Takenao Fujii, Ryohei Kokawa, Keiji Deuchi, Ritsuko Kuwana, and Hiromu Takamatsu
- Abstract
Background: If a fixed stress is applied to the three-dimensional z-axis of a solid material, followed by heating, the amount of thermal expansion increases according to a fixed coefficient of thermal expansion. When expansion is plotted against temperature, the transition temperature at which the physical properties of the material change is at the apex of the curve. The composition of a microbial cell depends on the species and condition of the cell; consequently, the rate of thermal expansion and the transition temperature also depend on the species and condition of the cell. We have developed a method for measuring the coefficient of thermal expansion and the transition temperature of cells using a nano thermal analysis system in order to study the physical nature of the cells. Results: The tendency was seen that among vegetative cells, the Gram-negative Escherichia coli and Pseudomonas aeruginosa have higher coefficients of linear expansion and lower transition temperatures than the Gram-positive Staphylococcus aureus and Bacillus subtilis. On the other hand, spores, which have low water content, overall showed lower coefficients of linear expansion and higher transition temperatures than vegetative cells. Comparing these trends to non-microbial materials, vegetative cells showed phenomenon similar to plastics and spores showed behaviour similar to metals with regards to the coefficient of liner thermal expansion. Conclusions: We show that vegetative cells occur phenomenon of similar to plastics and spores to metals with regard to the coefficient of liner thermal expansion. Cells may be characterized by the coefficient of linear expansion as a physical index; the coefficient of linear expansion may also characterize cells structurally since it relates to volumetric changes, surface area changes, the degree of expansion of water contained within the cell, and the intensity of the internal stress on the cellular membrane. The coefficient of linear expansion holds promise as a new index for furthering the understanding of the characteristics of cells. It is likely to be a powerful tool for investigating changes in the rate of expansion and also in understanding the physical properties of cells. [ABSTRACT FROM AUTHOR]
- Published
- 2013
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33. Profile measurement of aspheric lenses using a scanning electron microscope
- Author
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Ryohei Kokawa and Hisayoshi Satou
- Subjects
Surface (mathematics) ,Materials science ,business.industry ,Scanning electron microscope ,Mechanical Engineering ,Astrophysics::Cosmology and Extragalactic Astrophysics ,Electron ,Industrial and Manufacturing Engineering ,law.invention ,Lens (optics) ,Aspheric lens ,Optics ,Machining ,Mechanics of Materials ,law ,business ,Constant (mathematics) ,SIMPLE algorithm - Abstract
Optical methods have been proposed for the profile measurement of aspheric lens, but further investigation is needed to improve the accuracy of the machining. A method for the measurement of small-diameter lenses was developed using a scanning electron microscope. Photo-semiconducdors were used to detect backscattered electrons which were reflected on the surface of the lens. A new simple algorithm which makes it possible to derive direction angle and slant angle of the normal at the respective observed points was proposed. The slope of a plastic aspheric lens was measured in terms of the normal. Contour circles of equi-slope were illustrated. The difference in the radii of the circles for that the slope was varied with constant step was deformed due to the aspherity. A profile of the aspherity along the radial direction could be obtained by integrating the slope. The error from the designed profile could be evaluated based on the result.
- Published
- 1989
- Full Text
- View/download PDF
34. With respect to coefficient of linear thermal expansion, bacterial vegetative cells and spores resemble plastics and metals, respectively
- Author
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Akinori Kogure, Koichi Nakanishi, Keiji Deuchi, Hiromu Takamatsu, Ritsuko Kuwana, Takenao Fujii, and Ryohei Kokawa
- Subjects
Phase transition ,Staphylococcus aureus ,Materials science ,Microorganisms ,Biomedical Engineering ,Thermodynamics ,Medicine (miscellaneous) ,Pharmaceutical Science ,Bioengineering ,Models, Biological ,Applied Microbiology and Biotechnology ,Thermal expansion ,Phase Transition ,Degree (temperature) ,Microbiology ,Stress (mechanics) ,Cytosol ,Transition temperature ,Escherichia coli ,Thermal analysis ,Water content ,Spores, Bacterial ,Research ,Cell Membrane ,Temperature ,Spore ,Scanning probe microscope ,Biomechanical Phenomena ,Metals ,Pseudomonas aeruginosa ,Nano thermal analysis ,Molecular Medicine ,Coefficient of liner thermal expansion ,Plastics ,Intensity (heat transfer) ,Bacillus subtilis - Abstract
Background If a fixed stress is applied to the three-dimensional z-axis of a solid material, followed by heating, the amount of thermal expansion increases according to a fixed coefficient of thermal expansion. When expansion is plotted against temperature, the transition temperature at which the physical properties of the material change is at the apex of the curve. The composition of a microbial cell depends on the species and condition of the cell; consequently, the rate of thermal expansion and the transition temperature also depend on the species and condition of the cell. We have developed a method for measuring the coefficient of thermal expansion and the transition temperature of cells using a nano thermal analysis system in order to study the physical nature of the cells. Results The tendency was seen that among vegetative cells, the Gram-negative Escherichia coli and Pseudomonas aeruginosa have higher coefficients of linear expansion and lower transition temperatures than the Gram-positive Staphylococcus aureus and Bacillus subtilis. On the other hand, spores, which have low water content, overall showed lower coefficients of linear expansion and higher transition temperatures than vegetative cells. Comparing these trends to non-microbial materials, vegetative cells showed phenomenon similar to plastics and spores showed behaviour similar to metals with regards to the coefficient of liner thermal expansion. Conclusions We show that vegetative cells occur phenomenon of similar to plastics and spores to metals with regard to the coefficient of liner thermal expansion. Cells may be characterized by the coefficient of linear expansion as a physical index; the coefficient of linear expansion may also characterize cells structurally since it relates to volumetric changes, surface area changes, the degree of expansion of water contained within the cell, and the intensity of the internal stress on the cellular membrane. The coefficient of linear expansion holds promise as a new index for furthering the understanding of the characteristics of cells. It is likely to be a powerful tool for investigating changes in the rate of expansion and also in understanding the physical properties of cells.
- Full Text
- View/download PDF
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