104 results on '"Sébastien Fontaine"'
Search Results
2. Decision-based interactive model to determine re-opening conditions of a large university campus in Belgium during the first COVID-19 wave
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Vincent Denoël, Olivier Bruyère, Gilles Louppe, Fabrice Bureau, Vincent D’orio, Sébastien Fontaine, Laurent Gillet, Michèle Guillaume, Éric Haubruge, Anne-Catherine Lange, Fabienne Michel, Romain Van Hulle, Maarten Arnst, Anne-Françoise Donneau, and Claude Saegerman
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Screening ,COVID ,Pandemic ,Model ,University ,Student ,Public aspects of medicine ,RA1-1270 - Abstract
Abstract Background The role played by large-scale repetitive SARS-CoV-2 screening programs within university populations interacting continuously with an urban environment, is unknown. Our objective was to develop a model capable of predicting the dispersion of viral contamination among university populations dividing their time between social and academic environments. Methods Data was collected through real, large-scale testing developed at the University of Liège, Belgium, during the period Sept. 28th-Oct. 29th 2020. The screening, offered to students and staff (n = 30,000), began 2 weeks after the re-opening of the campus but had to be halted after 5 weeks due to an imposed general lockdown. The data was then used to feed a two-population model (University + surrounding environment) implementing a generalized susceptible-exposed-infected-removed compartmental modeling framework. Results The considered two-population model was sufficiently versatile to capture the known dynamics of the pandemic. The reproduction number was estimated to be significantly larger on campus than in the urban population, with a net difference of 0.5 in the most severe conditions. The low adhesion rate for screening (22.6% on average) and the large reproduction number meant the pandemic could not be contained. However, the weekly screening could have prevented 1393 cases (i.e. 4.6% of the university population; 95% CI: 4.4–4.8%) compared to a modeled situation without testing. Conclusion In a real life setting in a University campus, periodic screening could contribute to limiting the SARS-CoV-2 pandemic cycle but is highly dependent on its environment.
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- 2022
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3. Factors Determining the Implementation of Measures Aimed at Preventing Zoonotic Diseases in Veterinary Practices
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Véronique Renault, Sébastien Fontaine, and Claude Saegerman
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one health ,biosecurity ,veterinarians ,students ,Health Belief Model ,perception ,Medicine - Abstract
Background: Zoonoses prevention relies mainly on the implementation of different biosecurity measures. This study aimed to assess the level of implementation of biosecurity measures by veterinary practitioners and students and to identify the possible behaviour change determinants. Methods: The data was collected through a cross-sectional survey (N = 382). Statistical analyses were implemented based on the Health Belief Model to identify the possible determinant of the behaviours and the explanatory variables of the perceptions. Results: The survey showed a good level of implementation of the biosecurity measures (median of 81%). The implementation was associated with a higher perception of the zoonoses’ susceptibility and the measures’ benefits, and with a lower perception of the zoonoses’ severity. The study also revealed that the decision to implement a measure was mainly taken on a case-by-case basis depending on the perceived risk of exposure related to a specific context or intervention. Conclusion: The main determining factors identified for the implementation of biosecurity measures (BSMs) were the risk susceptibility and the benefits of the biosecurity measures, which could be influenced by evidence-based communication. The methodology developed can be applied regularly and in other countries to better capture these changes in perceptions over time.
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- 2021
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4. The coordination of leaf photosynthesis links C and N fluxes in C3 plant species.
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Vincent Maire, Pierre Martre, Jens Kattge, François Gastal, Gerd Esser, Sébastien Fontaine, and Jean-François Soussana
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Medicine ,Science - Abstract
Photosynthetic capacity is one of the most sensitive parameters in vegetation models and its relationship to leaf nitrogen content links the carbon and nitrogen cycles. Process understanding for reliably predicting photosynthetic capacity is still missing. To advance this understanding we have tested across C(3) plant species the coordination hypothesis, which assumes nitrogen allocation to photosynthetic processes such that photosynthesis tends to be co-limited by ribulose-1,5-bisphosphate (RuBP) carboxylation and regeneration. The coordination hypothesis yields an analytical solution to predict photosynthetic capacity and calculate area-based leaf nitrogen content (N(a)). The resulting model linking leaf photosynthesis, stomata conductance and nitrogen investment provides testable hypotheses about the physiological regulation of these processes. Based on a dataset of 293 observations for 31 species grown under a range of environmental conditions, we confirm the coordination hypothesis: under mean environmental conditions experienced by leaves during the preceding month, RuBP carboxylation equals RuBP regeneration. We identify three key parameters for photosynthetic coordination: specific leaf area and two photosynthetic traits (k(3), which modulates N investment and is the ratio of RuBP carboxylation/oxygenation capacity (V(Cmax)) to leaf photosynthetic N content (N(pa)); and J(fac), which modulates photosynthesis for a given k(3) and is the ratio of RuBP regeneration capacity (J(max)) to V(Cmax)). With species-specific parameter values of SLA, k(3) and J(fac), our leaf photosynthesis coordination model accounts for 93% of the total variance in N(a) across species and environmental conditions. A calibration by plant functional type of k(3) and J(fac) still leads to accurate model prediction of N(a), while SLA calibration is essentially required at species level. Observed variations in k(3) and J(fac) are partly explained by environmental and phylogenetic constraints, while SLA variation is partly explained by phylogeny. These results open a new avenue for predicting photosynthetic capacity and leaf nitrogen content in vegetation models.
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- 2012
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5. A tale of four stories: soil ecology, theory, evolution and the publication system.
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Sébastien Barot, Manuel Blouin, Sébastien Fontaine, Pascal Jouquet, Jean-Christophe Lata, and Jérôme Mathieu
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Medicine ,Science - Abstract
BACKGROUND: Soil ecology has produced a huge corpus of results on relations between soil organisms, ecosystem processes controlled by these organisms and links between belowground and aboveground processes. However, some soil scientists think that soil ecology is short of modelling and evolutionary approaches and has developed too independently from general ecology. We have tested quantitatively these hypotheses through a bibliographic study (about 23000 articles) comparing soil ecology journals, generalist ecology journals, evolutionary ecology journals and theoretical ecology journals. FINDINGS: We have shown that soil ecology is not well represented in generalist ecology journals and that soil ecologists poorly use modelling and evolutionary approaches. Moreover, the articles published by a typical soil ecology journal (Soil Biology and Biochemistry) are cited by and cite low percentages of articles published in generalist ecology journals, evolutionary ecology journals and theoretical ecology journals. CONCLUSION: This confirms our hypotheses and suggests that soil ecology would benefit from an effort towards modelling and evolutionary approaches. This effort should promote the building of a general conceptual framework for soil ecology and bridges between soil ecology and general ecology. We give some historical reasons for the parsimonious use of modelling and evolutionary approaches by soil ecologists. We finally suggest that a publication system that classifies journals according to their Impact Factors and their level of generality is probably inadequate to integrate "particularity" (empirical observations) and "generality" (general theories), which is the goal of all natural sciences. Such a system might also be particularly detrimental to the development of a science such as ecology that is intrinsically multidisciplinary.
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- 2007
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6. Tractable Term Structure Models.
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Bruno Feunou, Jean-Sébastien Fontaine, Anh Le, and Christian Lundblad
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- 2022
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7. Secular Economic Changes and Bond Yields
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Jean-Sébastien Fontaine and Bruno Feunou
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Economics and Econometrics ,Bond ,Welfare economics ,Economics ,Social Sciences (miscellaneous) - Abstract
We build a model of bond yields in an economy with secular changes to inflation, real rate, and output growth. Long-run restrictions identify nominal shocks that do not influence the long-run real rate and output growth. Before the anchoring of inflation around the mid-1990s, nominal shocks lifted the output gap and inflation. This led to a higher and steeper yield curve because the short rate was expected to peak after several quarters, following declines in the responses of growth and inflation. With inflation anchored, nominal shocks have small impacts on inflation, output, and bond yields, mostly via the term premium.
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- 2023
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8. Bond Risk Premia and Gaussian Term Structure Models.
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Bruno Feunou and Jean-Sébastien Fontaine
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- 2018
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9. Bioenergetic control of soil carbon dynamics across depth
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Ludovic Henneron, Jerôme Balesdent, Gaël Alvarez, Pierre Barré, François Baudin, Isabelle Basile-Doelsch, Lauric Cécillon, Alejandro Fernandez-Martinez, Christine Hatté, Sébastien Fontaine, Etude et Compréhension de la biodiversité (ECODIV), Université de Rouen Normandie (UNIROUEN), Normandie Université (NU)-Normandie Université (NU), Unité Mixte de Recherche sur l'Ecosystème Prairial - UMR (UREP), VetAgro Sup - Institut national d'enseignement supérieur et de recherche en alimentation, santé animale, sciences agronomiques et de l'environnement (VAS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Centre européen de recherche et d'enseignement des géosciences de l'environnement (CEREGE), Institut de Recherche pour le Développement (IRD)-Aix Marseille Université (AMU)-Collège de France (CdF (institution))-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Laboratoire de géologie de l'ENS (LGENS), Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS)-Département des Géosciences - ENS Paris, École normale supérieure - Paris (ENS-PSL), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-École normale supérieure - Paris (ENS-PSL), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL), Institut des Sciences de la Terre de Paris (iSTeP), Institut national des sciences de l'Univers (INSU - CNRS)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS), Institut des Sciences de la Terre (ISTerre), Institut national des sciences de l'Univers (INSU - CNRS)-Institut de recherche pour le développement [IRD] : UR219-Université Savoie Mont Blanc (USMB [Université de Savoie] [Université de Chambéry])-Centre National de la Recherche Scientifique (CNRS)-Université Gustave Eiffel-Université Grenoble Alpes (UGA), Laboratoire des Sciences du Climat et de l'Environnement [Gif-sur-Yvette] (LSCE), Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Institut national des sciences de l'Univers (INSU - CNRS)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS), Géochrononologie Traceurs Archéométrie (GEOTRAC), and Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Institut national des sciences de l'Univers (INSU - CNRS)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS)-Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Institut national des sciences de l'Univers (INSU - CNRS)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS)
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Soil ,[SDV.EE.ECO]Life Sciences [q-bio]/Ecology, environment/Ecosystems ,Multidisciplinary ,Rhizosphere ,General Physics and Astronomy ,Agriculture ,General Chemistry ,[SDE.BE]Environmental Sciences/Biodiversity and Ecology ,Carbon ,Soil Microbiology ,General Biochemistry, Genetics and Molecular Biology ,Carbon Cycle - Abstract
Soil carbon dynamics is strongly controlled by depth globally, with increasingly slow dynamics found at depth. The mechanistic basis remains however controversial, limiting our ability to predict carbon cycle-climate feedbacks. Combining radiocarbon and thermal analyses with long-term incubations in absence/presence of continuously 13C/14C-labelled plants, we show here that bioenergetic constraints of decomposers consistently drive the depth-dependency of soil carbon dynamics over a range of mineral reactivity contexts. The slow dynamics of subsoil carbon was tightly related to both its low energy density and high activation energy of decomposition, leading to an unfavorable ‘return-on-energy-investment’ for decomposers. We also observed strong acceleration of millennia-old subsoil carbon decomposition induced by roots (‘rhizosphere priming’), showing that sufficient supply of energy by roots is able to alleviate the strong energy limitation of decomposition. These findings demonstrate that subsoil carbon persistence results from its poor energy quality together with the lack of energy supply by roots due to their low density at depth. These findings provide insights into the bioenergetic control of SOC persistence and indicate that an increase in plant rooting depth induced by global change could threaten the storage of millennia-old SOC in deep layers.
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- 2023
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10. Data from In Vivo Detection of Succinate by Magnetic Resonance Spectroscopy as a Hallmark of SDHx Mutations in Paraganglioma
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Bertrand Tavitian, Judith Favier, Anne-Paule Gimenez-Roqueplo, Laure Fournier, Philippe Halimi, Pierre Rustin, Paule Benit, Charles-André Cuenod, Sébastien Fontaine, Benjamin Banting, Estelle Robidel, Nelly Burnichon, Gwennhael Autret, Franck Zinzindohoué, Chris Ottolenghi, Maxime Janin, Laurence Amar, Alexandre Buffet, Aurélie Morin, Alexandre Bellucci, and Charlotte Lussey-Lepoutre
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Purpose: Germline mutations in genes encoding mitochondrial succinate dehydrogenase (SDH) are found in patients with paragangliomas, pheochromocytomas, gastrointestinal stromal tumors, and renal cancers. SDH inactivation leads to a massive accumulation of succinate, acting as an oncometabolite and which levels, assessed on surgically resected tissue are a highly specific biomarker of SDHx-mutated tumors. The aim of this study was to address the feasibility of detecting succinate in vivo by magnetic resonance spectroscopy.Experimental Design: A pulsed proton magnetic resonance spectroscopy (1H-MRS) sequence was developed, optimized, and applied to image nude mice grafted with Sdhb−/− or wild-type chromaffin cells. The method was then applied to patients with paraganglioma carrying (n = 5) or not (n = 4) an SDHx gene mutation. Following surgery, succinate was measured using gas chromatography/mass spectrometry, and SDH protein expression was assessed by immunohistochemistry in resected tumors.Results: A succinate peak was observed at 2.44 ppm by 1H-MRS in all Sdhb−/−-derived tumors in mice and in all paragangliomas of patients carrying an SDHx gene mutation, but neither in wild-type mouse tumors nor in patients exempt of SDHx mutation. In one patient, 1H-MRS results led to the identification of an unsuspected SDHA gene mutation. In another case, it helped define the pathogenicity of a variant of unknown significance in the SDHB gene.Conclusions: Detection of succinate by 1H-MRS is a highly specific and sensitive hallmark of SDHx mutations. This noninvasive approach is a simple and robust method allowing in vivo detection of the major biomarker of SDHx-mutated tumors. Clin Cancer Res; 22(5); 1120–9. ©2015 AACR.
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- 2023
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11. Supplementary data from In Vivo Detection of Succinate by Magnetic Resonance Spectroscopy as a Hallmark of SDHx Mutations in Paraganglioma
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Bertrand Tavitian, Judith Favier, Anne-Paule Gimenez-Roqueplo, Laure Fournier, Philippe Halimi, Pierre Rustin, Paule Benit, Charles-André Cuenod, Sébastien Fontaine, Benjamin Banting, Estelle Robidel, Nelly Burnichon, Gwennhael Autret, Franck Zinzindohoué, Chris Ottolenghi, Maxime Janin, Laurence Amar, Alexandre Buffet, Aurélie Morin, Alexandre Bellucci, and Charlotte Lussey-Lepoutre
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Figure S1- Phantom spectra of succinate at 4.7T and 3 T. Figure S2- SUCCES in Sdhb-/- allografted tumors in mice. Figure S3 - SUCCES in SDHx-mutated PPGL. Figure S4 - SUCCES in non SDHx-mutated PPGL.
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- 2023
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12. Gastric electrical stimulation versus per‐oral pyloromyotomy for the treatment of nausea and vomiting associated with gastroparesis: An observational study of two cohorts
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Guillaume Gourcerol, Jean Michel Gonzalez, Bruno Bonaz, Sébastien Fontaine, Frank Zerbib, Francois Mion, Paul Basile, André Gillibert, Amélie Labonde, Heithem Soliman, Véronique Vitton, Benoit Coffin, and Jérémie Jacques
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Endocrine and Autonomic Systems ,Physiology ,Gastroenterology - Published
- 2023
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13. Comment on bg-2022-197
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Sébastien Fontaine
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- 2023
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14. Current controversies on mechanisms controlling soil carbon storage: implications for interactions with practitioners and policy-makers. A review
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Delphine Derrien, Pierre Barré, Isabelle Basile-Doelsch, Lauric Cécillon, Abad Chabbi, Alexandra Crème, Sébastien Fontaine, Ludovic Henneron, Noémie Janot, Gwenaëlle Lashermes, Katell Quénéa, Frédéric Rees, Marie-France Dignac, Unité de recherche Biogéochimie des Ecosystèmes Forestiers (BEF), Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), École normale supérieure - Paris (ENS-PSL), Université Paris sciences et lettres (PSL), Centre européen de recherche et d'enseignement des géosciences de l'environnement (CEREGE), Institut de Recherche pour le Développement (IRD)-Institut National de la Recherche Agronomique (INRA)-Aix Marseille Université (AMU)-Collège de France (CdF (institution))-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS), Plateforme de géochimie isotopique ASTER-CEREGE, Institut de Recherche pour le Développement (IRD)-Aix Marseille Université (AMU)-Collège de France (CdF (institution))-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Institut de Recherche pour le Développement (IRD)-Aix Marseille Université (AMU)-Collège de France (CdF (institution))-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Ecologie fonctionnelle et écotoxicologie des agroécosystèmes (ECOSYS), AgroParisTech-Université Paris-Saclay-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Unité Mixte de Recherche sur l'Ecosystème Prairial - UMR (UREP), VetAgro Sup - Institut national d'enseignement supérieur et de recherche en alimentation, santé animale, sciences agronomiques et de l'environnement (VAS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Etude et Compréhension de la biodiversité (ECODIV), Université de Rouen Normandie (UNIROUEN), Normandie Université (NU)-Normandie Université (NU), Interactions Sol Plante Atmosphère (UMR ISPA), Ecole Nationale Supérieure des Sciences Agronomiques de Bordeaux-Aquitaine (Bordeaux Sciences Agro)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Fractionnement des AgroRessources et Environnement (FARE), Université de Reims Champagne-Ardenne (URCA)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Sorbonne Université (SU), Institut d'écologie et des sciences de l'environnement de Paris (iEES Paris ), and Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Université Paris-Est Créteil Val-de-Marne - Paris 12 (UPEC UP12)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)
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Carbon storage ,POM ,InaccessibilityModels ,Big data ,Environmental Engineering ,Management practices ,[SDE]Environmental Sciences ,Chemical recalcitrance ,Biomass use ,Agronomy and Crop Science - Abstract
There is currently an intense debate about the potential for additional organic carbon storage in soil, the strategies by which it may be accomplished and what the actual benefits might be for agriculture and the climate. Controversy forms an essential part of the scientific process, but on the topic of soil carbon storage, it may confuse the agricultural community and the general public and may delay actions to fight climate change. In an attempt to shed light on this topic, the originality of this article lies in its intention to provide a balanced description of contradictory scientific opinions on soil carbon storage and to examine how the scientific community can support decision-making despite the controversy. In the first part, we review and attempt to reconcile conflicting views on the mechanisms controlling organic carbon dynamics in soil. We discuss the divergent opinions about chemical recalcitrance, the microbial or plant origin of persistent soil organic matter, the contribution of particulate organic matter to additional organic carbon storage in soil, and the spatial and energetic inaccessibility of soil organic matter to decomposers. In the second part, we examine the advantages and limitations of big data management and modeling, which are essential tools to link the latest scientific theories with the actions taken by stakeholders. Finally, we show how the analysis and discussion of controversies can guide scientists in supporting stakeholders for the design of (i) appropriate trade-offs for biomass use in agriculture and forestry and (ii) climate-smart management practices, keeping in mind their still unresolved effects on soil carbon storage.
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- 2023
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15. Developing a Video Game as an Awareness and Research Tool Based on SARS-CoV-2 Epidemiological Dynamics and Motivational Perspectives
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Alexis Messina, Michael Schyns, Björn-Olav Dozo, Vincent Denoël, Romain Van Hulle, Anne-Marie Etienne, Stéphanie Delroisse, Olivier Bruyère, Vincent D’Orio, Sébastien Fontaine, Michèle Guillaume, Anne-Catherine Lange, Gilles Louppe, Fabienne Michel, Anne-Sophie Nyssen, Fabrice Bureau, Eric Haubruge, Anne-Françoise Donneau, Laurent Gillet, and Claude Saegerman
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General Veterinary ,General Immunology and Microbiology ,Article Subject ,General Medicine - Abstract
In mid-2020, the University of Liège (ULiège, Belgium) commissioned the ULiège Video Game Research Laboratory (Liège Game Lab) and the AR/VR Lab of the HEC-Management School of ULiège to create a serious game to raise awareness of preventive measures for its university community. This project has its origins in two objectives of the institutional policy of ULiège in response to the crisis caused by SARS-CoV-2 to raise awareness among community members of various preventive actions that can reduce the spread of the virus and to inform about the emergence and progression of a pandemic. After almost two years of design, the project resulted in the creation of SARS Wars, a decision-making management game for browsers and smartphones. This article presents the creative process of the game, specifically the integration of an adapted SEIR (susceptible-exposed-infectious-recovered) model, as well as the modeling of intercompartmental circulation dynamics in the game’s algorithm, and the various limitations observed regarding the game’s original missions and possibilities for future work. The SARS-CoV-2 video game project may be considered an innovative way to translate epidemiology into a language that can be used in the scope of citizen sciences. On the one hand, it provides an engaging tool and encourages active participation of the audience. On the other hand, it allows us to have a better understanding of the dynamic changes of a pandemic or an epidemic (crisis preparedness, monitoring, and control) and to anticipate potential consequences in the given parameters at set time (emerging risk identification), while offering insights for impact on some parameters on motivation (social science aspect).
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- 2023
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16. Compliance with Barrier Gestures during COVID-19 Pandemic as a Function of the Context: A Longitudinal Observational Survey at the University of Liège
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Gianni Parisi, Véronique Renault, Marie-France Humblet, Nicolas Ochelen, Anh Nguyet Diep, Michèle Guillaume, Anne-Françoise Donneau, Fabrice Bureau, Laurent Gillet, Anne-Catherine Lange, Fabienne Michel, Sébastien Fontaine, and Claude Saegerman
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adherence ,barrier gesture ,COVID-19 ,compliance ,SARS-CoV-2 ,Gestures ,Health, Toxicology and Mutagenesis ,Physical Distancing ,Public Health, Environmental and Occupational Health ,Humans ,Longitudinal Studies ,Pandemics - Abstract
During the COVID-19 pandemic, barrier gestures such as mask wearing, physical distancing, greetings without contact, one-way circulation flow, and hand sanitization were major strategies to prevent the spread of SARS-CoV-2, but they were only useful if consistently applied. This survey was a follow-up of the first survey performed in 2020 at the University of Liège. We aim to evaluate the compliance with these gestures on campuses and examine differences in the extent of the compliance observed in different educational activities and contexts. During 3.5 months, the counting of compliant and non-compliant behaviors was performed each week in randomly selected rooms. Using data collected during both surveys (2020 and 2021), binomial negative regression models of compliance depending on periods (teaching periods and exam sessions), type of rooms, and campuses were conducted to evaluate prevalence ratios of compliance. The percentage of compliance in this second survey was the highest for mask wearing and physical distancing during educational activities (90% and 88%, respectively) and lowest for physical distancing outside educational activities and hand sanitization (45% and 52%, respectively). Multivariate analyses revealed that the compliance with most gestures was significantly higher in teaching rooms than in hallways and restaurants and during exam sessions. The compliance with physical distancing was significantly higher (from 66%) in auditoriums, where students had to remain seated, than during practical works that allowed or required free movement. Therefore, the compliance with barrier gestures was associated with contextual settings, which should be considered when communicating and managing barrier gestures. Further studies should specify and confirm the determining contextual characteristics regarding the compliance with barrier gestures in times of pandemic.
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- 2022
17. Carbon and nitrogen cycling in Yedoma permafrost controlled by microbial functional limitations
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Sylvain Monteux, Jaanis Juhanson, Josefine Walz, Sandrine Revaillot, Frida Keuper, Sara Hallin, James T. Weedon, Ellen Dorrepaal, Sébastien Fontaine, Erik Verbruggen, Konstantin Gavazov, Eveline J. Krab, Systems Ecology, Swedish University of Agricultural Sciences (SLU), Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Unité Mixte de Recherche sur l'Ecosystème Prairial - UMR (UREP), VetAgro Sup - Institut national d'enseignement supérieur et de recherche en alimentation, santé animale, sciences agronomiques et de l'environnement (VAS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Universiteit Antwerpen [Antwerpen], and Vrije Universiteit Amsterdam [Amsterdam] (VU)
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Biogeochemical cycle ,010504 meteorology & atmospheric sciences ,[SDE.MCG]Environmental Sciences/Global Changes ,Yedoma ,010502 geochemistry & geophysics ,Permafrost ,01 natural sciences ,diversity ,thawing permafrost ,soil organic-matter ,SDG 13 - Climate Action ,r package ,Organic matter ,Nitrogen cycle ,0105 earth and related environmental sciences ,2. Zero hunger ,chemistry.chemical_classification ,biomass ,Physics ,Soil organic matter ,Soil chemistry ,temperature ,15. Life on land ,fatty-acids ,sensitivity ,communities ,Microbial population biology ,chemistry ,13. Climate action ,Environmental chemistry ,General Earth and Planetary Sciences ,Environmental science ,reveals - Abstract
Warming-induced microbial decomposition of organic matter in permafrost soils constitutes a climate-change feedback of uncertain magnitude. While physicochemical constraints on soil functioning are relatively well understood, the constraints attributable to microbial community composition remain unclear. Here we show that biogeochemical processes in permafrost can be impaired by missing functions in the microbial community-functional limitations-probably due to environmental filtering of the microbial community over millennia-long freezing. We inoculated Yedoma permafrost with a functionally diverse exogenous microbial community to test this mechanism by introducing potentially missing microbial functions. This initiated nitrification activity and increased CO2 production by 38% over 161 days. The changes in soil functioning were strongly associated with an altered microbial community composition, rather than with changes in soil chemistry or microbial biomass. The present permafrost microbial community composition thus constrains carbon and nitrogen biogeochemical processes, but microbial colonization, likely to occur upon permafrost thaw in situ, can alleviate such functional limitations. Accounting for functional limitations and their alleviation could strongly increase our estimate of the vulnerability of permafrost soil organic matter to decomposition and the resulting global climate feedback. Carbon dioxide emissions from permafrost thaw are substantially enhanced by relieving microbial functional limitations, according to incubation experiments on Yedoma permafrost.
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- 2020
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18. Review for 'High‐level nitrogen additions accelerate soil respiration reduction over time in a boreal forest'
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null Sébastien Fontaine
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- 2022
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19. Advancing the mechanistic understanding of the priming effect on soil organic matter mineralisation
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Laetitia Bernard, Isabelle Basile‐Doelsch, Delphine Derrien, Nicolas Fanin, Sébastien Fontaine, Bertrand Guenet, Battle Karimi, Claire Marsden, Pierre‐Alain Maron, Ecologie fonctionnelle et biogéochimie des sols et des agro-écosystèmes (UMR Eco&Sols), Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Institut de Recherche pour le Développement (IRD)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Institut Agro - Montpellier SupAgro, Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro), Centre européen de recherche et d'enseignement des géosciences de l'environnement (CEREGE), Institut de Recherche pour le Développement (IRD)-Aix Marseille Université (AMU)-Collège de France (CdF (institution))-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Unité de recherche Biogéochimie des Ecosystèmes Forestiers (BEF), Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Interactions Sol Plante Atmosphère (UMR ISPA), Ecole Nationale Supérieure des Sciences Agronomiques de Bordeaux-Aquitaine (Bordeaux Sciences Agro)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Unité Mixte de Recherche sur l'Ecosystème Prairial - UMR (UREP), VetAgro Sup - Institut national d'enseignement supérieur et de recherche en alimentation, santé animale, sciences agronomiques et de l'environnement (VAS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Laboratoire de géologie de l'ENS (LGENS), Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS)-Département des Géosciences - ENS Paris, École normale supérieure - Paris (ENS-PSL), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-École normale supérieure - Paris (ENS-PSL), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL), Novasol Experts [Dijon], Agroécologie [Dijon], and Université de Bourgogne (UB)-AgroSup Dijon - Institut National Supérieur des Sciences Agronomiques, de l'Alimentation et de l'Environnement-Université Bourgogne Franche-Comté [COMUE] (UBFC)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)
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[SDV.EE]Life Sciences [q-bio]/Ecology, environment ,model ,spriming effect ,microbial actors ,carbon cycle ,enzymes ,minerals ,[SDV.SA.SDS]Life Sciences [q-bio]/Agricultural sciences/Soil study ,ecosystem services ,Ecology, Evolution, Behavior and Systematics ,soil - Abstract
International audience; The priming effect (PE) is a key mechanism contributing to the carbon balance of the soil ecosystem. Almost 100 years of research since its discovery in 1926 have led to a rich body of scientific publications to identify the drivers and mechanisms involved. A few review articles have summarised the acquired knowledge; the last major one was published in 2010. Since then, knowledge on the soil microbial communities involved in PE and in PE + C sequestration mechanisms has been considerably renewed. This article reviews current knowledge on soil PE to state to what extent new insights may improve our ability to understand and predict the evolution of soil C stocks. We propose a framework to unify the different concepts and terms that have emerged from the international scientific community on this topic, report recent discoveries and identify key research needs. Seventy per cent of the studies on the soil PE were published in the last 10 years, illustrating a renewed interest for PE, probably linked to the increased concern about the importance of soil carbon for climate change and food security issues. Among all the drivers and mechanisms proposed along with the different studies to explain PE, some are named differently but actually refer to the same object. This overall introduces 'artificial' complexity for the mechanistic understanding of PE, and we propose a common, shared terminology. Despite the remaining knowledge gaps, consistent progress has been achieved to decipher the abiotic mechanisms underlying PE, together with the role of enzymes and the identity of the microbial actors involved. However, including PE into mechanistic models of SOM dynamics remains challenging as long as the mechanisms are not fully understood. In the meantime, empirical alternatives are available that reproduce observations accurately when calibration is robust. Based on the current state of knowledge, we propose different scenarios depicting to what extent PE may impact ecosystem services under climate change conditions.
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- 2022
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20. Soil enzymes in response to climate warming: Mechanisms and feedbacks
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Nicolas Fanin, Maria Mooshammer, Marie Sauvadet, Cheng Meng, Gaël Alvarez, Laëtitia Bernard, Isabelle Bertrand, Evgenia Blagodatskaya, Lucie Bon, Sébastien Fontaine, Shuli Niu, Gwenaelle Lashermes, Tania L. Maxwell, Michael N. Weintraub, Lisa Wingate, Daryl Moorhead, and Andrew T. Nottingham
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P33 - Chimie et physique du sol ,Changement climatique ,P40 - Météorologie et climatologie ,Sciences du sol ,Carbone organique du sol ,Enzyme ,Activité enzymatique ,Réchauffement global ,Écologie microbienne ,Ecology, Evolution, Behavior and Systematics - Abstract
Soil enzymes are central to ecosystem processes because they mediate numerous reactions that are essential in biogeochemical cycles. However, how soil enzyme activities will respond to global warming is uncertain. We reviewed the literature on mechanisms linking temperature effects on soil enzymes and microbial communities, and outlined a conceptual overview on how these changes may influence soil carbon fluxes in terrestrial ecosystems. At the enzyme scale, although temperature can have a positive effect on enzymatic catalytic power in the short term (i.e. via the instantaneous response of activity), this effect can be countered over time by enzyme inactivation and reduced substrate affinity. At the microbial scale, short-term warming can increase enzymatic catalytic power via accelerated synthesis and microbial turnover, but shifts in microbial community composition and growth efficiency may mediate the effect of warming in the long term. Although increasing enzyme activities may accelerate labile carbon decomposition over months to years, our literature review highlights that this initial stage can be followed by the following phases: (a) a reduction in soil carbon loss, due to changing carbon use efficiency among communities or substrate depletion, which together can decrease microbial biomass and enzyme activity and (b) an acceleration of soil carbon loss, due to shifts in microbial community structure and greater allocation to oxidative enzymes for recalcitrant carbon degradation. Studies that bridge scales in time and space are required to assess whether there will be an attenuation or acceleration of soil carbon loss through changes in enzyme activities in the very long term. We conclude that soil enzymes determine the sensitivity of soil carbon to warming, but that the microbial community and enzymatic traits that mediate this effect change over time. Improving representation of enzymes in soil carbon models requires long-term studies that characterize the response of wide-ranging hydrolytic and oxidative enzymatic traits—catalytic power, kinetics, inactivation—and the microbial community responses that govern enzyme synthesis.
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- 2022
21. The First Random Observational Survey of Barrier Gestures against COVID-19
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Véronique, Renault, Marie-France, Humblet, Gianni, Parisi, Anne-Françoise, Donneau, Fabrice, Bureau, Laurent, Gillet, Sébastien, Fontaine, and Claude, Saegerman
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observation ,student ,Gestures ,SARS-CoV-2 ,COVID-19 ,compliance ,Article ,prevention ,barometer ,Belgium ,Surveys and Questionnaires ,barrier gestures ,Humans ,Medicine ,Hand Disinfection - Abstract
In the context of COVID-19 in Belgium, face-to-face teaching activities were allowed in Belgian universities at the beginning of the 2020–2021 academic year. Nevertheless, several control measures were established to control COVID-19 transmission on the campuses. To ensure compliance with these measures, a random observational survey, based on five barrier gestures, was implemented at the University of Liege (greetings without contact, hand sanitisation, following a one-way traffic flow, wearing a mask and physical distancing). Each barrier gesture was weighted, based on experts’ elicitation, and a scoring system was developed. The results were presented as a diagram (to identify the margin of improvement for each barrier gesture) and a risk management barometer. In total, 526 h of observations were performed. The study revealed that some possible improvements could be made in the management of facilities, in terms of room allocation, the functionality of hydro-alcoholic gel dispensers, floor markings and one-way traffic flow. Compliance with the barrier gestures reached an overall weighted score of 68.2 (between 0 and 100). Three barrier gestures presented a lower implementation rate and should be addressed: the use of hydro-alcoholic gel (particularly when exiting buildings), compliance with the traffic flow and the maintenance of a 1.5 m physical distance outside of the auditoriums. The methodology and tool developed in the present study can easily be applied to other settings. They were proven to be useful in managing COVID-19, as the barometer that was developed and the outcomes of this survey enabled an improved risk assessment on campuses, and identified the critical points to be addressed in any further public health communication or education messages.
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- 2021
22. Decision-based interactive model to determine re-opening conditions of a large university campus in Belgium during the first COVID-19 wave
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Vincent Denoël, Olivier Bruyère, Gilles Louppe, Fabrice Bureau, Vincent D’orio, Sébastien Fontaine, Laurent Gillet, Michèle Guillaume, Éric Haubruge, Anne-Catherine Lange, Fabienne Michel, Romain Van Hulle, Maarten Arnst, Anne-Françoise Donneau, and Claude Saegerman
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Public Health, Environmental and Occupational Health - Abstract
Background The role played by large-scale repetitive SARS-CoV-2 screening programs within university populations interacting continuously with an urban environment, is unknown. Our objective was to develop a model capable of predicting the dispersion of viral contamination among university populations dividing their time between social and academic environments. Methods Data was collected through real, large-scale testing developed at the University of Liège, Belgium, during the period Sept. 28th-Oct. 29th 2020. The screening, offered to students and staff (n = 30,000), began 2 weeks after the re-opening of the campus but had to be halted after 5 weeks due to an imposed general lockdown. The data was then used to feed a two-population model (University + surrounding environment) implementing a generalized susceptible-exposed-infected-removed compartmental modeling framework. Results The considered two-population model was sufficiently versatile to capture the known dynamics of the pandemic. The reproduction number was estimated to be significantly larger on campus than in the urban population, with a net difference of 0.5 in the most severe conditions. The low adhesion rate for screening (22.6% on average) and the large reproduction number meant the pandemic could not be contained. However, the weekly screening could have prevented 1393 cases (i.e. 4.6% of the university population; 95% CI: 4.4–4.8%) compared to a modeled situation without testing. Conclusion In a real life setting in a University campus, periodic screening could contribute to limiting the SARS-CoV-2 pandemic cycle but is highly dependent on its environment.
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- 2021
23. MEASURING LIMITS OF ARBITRAGE IN FIXED‐INCOME MARKETS
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Jean-Sébastien Fontaine and Guillaume Nolin
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Relative value ,050208 finance ,Index (economics) ,Financial economics ,05 social sciences ,Fixed income arbitrage ,Accounting ,0502 economics and business ,Arbitrage pricing theory ,Business ,Risk arbitrage ,Arbitrage ,Limits to arbitrage ,Finance ,050205 econometrics ,Index arbitrage - Abstract
We use relative value to measure limits to arbitrage in fixed-income markets. Relative value captures apparent deviations from no-arbitrage relationships. It is simple, intuitive and can be computed model-free for any bond. A pseudo-trading strategy based on relative value generates higher returns than one based on the well-known noise measure. The relative value is therefore a better proxy for limits to arbitrage. We construct relative value indices for the US, UK, Japan, Germany, Italy, France, Switzerland and Canada. Limits to arbitrage increase with the scarcity of capital: we find that each index is correlated with local volatility and funding costs. Limits to arbitrage also exhibit strong commonality across countries, consistent with the international mobility of capital. The relative value indices are updated regularly and available publicly.
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- 2019
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24. Universality of priming effect: An analysis using thirty five soils with contrasted properties sampled from five continents
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Nazia Perveen, M. Francesca Cotrufo, Bassem Dimassi, Catherine E. Stewart, Bruno Mary, Sébastien Fontaine, Evgenia Blagodatskaya, Muhammad Rashid Siddiq, Weixin Ding, Sébastien Barot, Vincent Maire, and Tanvir Shahzad
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2. Zero hunger ,chemistry.chemical_classification ,geography ,geography.geographical_feature_category ,Soil organic matter ,Soil Science ,Soil classification ,04 agricultural and veterinary sciences ,15. Life on land ,complex mixtures ,Microbiology ,Grassland ,Nutrient ,chemistry ,Agronomy ,Microbial population biology ,Soil water ,040103 agronomy & agriculture ,0401 agriculture, forestry, and fisheries ,Environmental science ,Organic matter ,Orchard - Abstract
A general occurrence of the phenomenon of priming effect (PE) across varying land use and soil types has not been established so far, particularly on a large geographical scale. Moreover, the impacts of soil properties and soil organic matter (SOM) distribution among physical fractions on the magnitude of PE are still unclear. We addressed these knowledge gaps by incubating thirty five soils with or without addition of 13C labeled cellulose for 262 days. The soils were sampled from different land uses and depths of contrasting soil types from five continents (Asia, Europe, America, Australia and Africa). Results showed positive PE in all soils including grassland, cropland, forest, savannah and orchard. On average, the cumulative PE represented 27.0 ± 28.7% of the CO2 efflux in control soils and 28.48 ± 21.08% of the remaining/unrespired cellulose-C. The PE was 72.1% higher in surface than deep soils suggesting that surface soils are more prone to PE induced by cellulose addition. Variations in PE were mainly explained by soil characteristics and not by land use. We found that the PE increased with the relative abundance of SOM not associated with minerals and rich in nitrogen (N). The observation of systematic positive PE in all soils suggested that microbial co-metabolism to decompose SOM is a widespread microbial strategy. Our results also support the idea that microorganisms use co-metabolism to mine nutrients in SOM since they target N-rich fractions. However, other mechanisms are also at play since positive PE was maintained despite the high availability of mineral nutrients. Overall, PE is a worldwide process playing a major role for soil C dynamics, especially in N-rich soils.
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- 2019
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25. A new experimental platform connecting the rhizosphere priming effect with CO2 fluxes of plant-soil systems
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Sébastien Fontaine, Gaël Alvarez, Frida Keuper, Camille Cros, Unité Mixte de Recherche sur l'Ecosystème Prairial - UMR (UREP), Institut National de la Recherche Agronomique (INRA)-VetAgro Sup - Institut national d'enseignement supérieur et de recherche en alimentation, santé animale, sciences agronomiques et de l'environnement (VAS), UPE, European Union Reference Laboratory for equine diseases (EURL), Agroressources et Impacts environnementaux (AgroImpact), and Institut National de la Recherche Agronomique (INRA)
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2. Zero hunger ,Rhizosphere ,[SDE.MCG]Environmental Sciences/Global Changes ,Soil organic matter ,flux 13C ,Soil Science ,Primary production ,Soil science ,04 agricultural and veterinary sciences ,15. Life on land ,priming effect de la rhizosphère ,Microbiology ,Mesocosm ,plateforme expérimentale ,13. Climate action ,co2 du sol végétal ,Respiration ,040103 agronomy & agriculture ,0401 agriculture, forestry, and fisheries ,Environmental science ,Ecosystem ,Ecosystem respiration ,Cycling - Abstract
International audience; Forty years of research on the rhizosphere priming effect (RPE) has demonstrated the potentially large increase (up to a factor 3) of soil organic matter mineralization induced by plant roots, but failed to directly quantify its contribution to the carbon (C) balance. Combining continuous CO2 flux measurements with RPE measurements has thus far been technically challenging. Here, we present an experimental platform of 40 mesocosms (volume = 88L; surface = 0.049 m2), including a 13C-labeled CO2 air-production system with a maximum capacity of 4 m3min−1 and customizable labeling intensity. For this study,13C depleted fossil C was used as source of labeled CO2 and the experiment was run for 250 days. Continuous net CO2 exchange measurements allowed us to estimate net ecosystem productivity, gross primary production and ecosystem respiration of the studied plant-soil systems. The RPE was regularly (bi-monthly to monthly) quantified by measuring the accumulation and isotopic composition of CO2 in dark chambers placed over the mesocosms. Our results show a good re- lationship between night plant-soil respiration (from continuous CO2 exchange measurements) and dark plant- soil respiration (from CO2 accumulation in dark chambers). This result suggests that our estimates of RPE and plant-soil fluxes based on the different methods are comparable. Preliminary results obtained in spring with grasses cultivated under ambient or elevated CO2 indicate that the RPE represents 1.22 ± 0.16% of gross primary production and 4.64 ± 1.12% of ecosystem respiration. The RPE estimates may have an uncertainty linked to the possible deviation in delta 13C between C sources (soil or plant) and released CO2 from these sources. We performed a sensitivity analysis on how the variation in intensity of isotopic labeling (difference in delta 13C between plant and soil) affects the uncertainty of RPE estimates considering 1‰ delta 13C deviation. Estimation of the RPE with an uncertainty lower than 10% of the estimated value requires a labeling intensity higher than 60 ‰. The developed platform will help to scale up the study of the RPE control on C cycling to the ecosystem level.
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- 2019
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26. Review for 'Response to Comment on ‘Soil carbon persistence governed by plant input and mineral protection at regional and global scales’'
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Sébastien Fontaine
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Mineral ,Ecology ,Environmental science ,Soil carbon ,Persistence (computer science) - Published
- 2021
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27. Review for 'Plant input does not exert stronger control on topsoil carbon persistence than climate in alpine grasslands'
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Sébastien Fontaine
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Topsoil ,chemistry ,Ecology ,Environmental science ,chemistry.chemical_element ,Carbon ,Persistence (computer science) - Published
- 2021
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28. 'Study of Population Structure of Microalgae in Sanandaj Dam-Iran'
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Véronique Renault, Claude Saegerman, and Sébastien Fontaine
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Algae ,biology ,Aquatic environment ,business.industry ,Ecology ,Aquatic ecosystem ,Population structure ,Food processing ,Environmental science ,General Medicine ,business ,biology.organism_classification ,Photosynthesis - Abstract
Algae are the basis of primary production in aquatic ecosystems. The onset of food production in a aquatic environment begins with these organisms and with a complex mechanism called photosynthesis...
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- 2021
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29. Main determinants of the acceptance of COVID-19 control measures by the population: A first pilot survey at the University of Liege, Belgium
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Véronique Renault, Sébastien Fontaine, Serge Eugène Mpouam, and Claude Saegerman
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General Veterinary ,General Immunology and Microbiology ,Belgium ,Surveys and Questionnaires ,Animals ,COVID-19 ,Humans ,General Medicine ,Students ,Pandemics - Abstract
In order to control the COVID-19 pandemic, barrier gestures were used to reduce the transmission of the virus within a community and avoid large peaks of infections with the risk of overwhelming the healthcare systems. The acceptability of these measures is the backbone of their successful implementation. However, population compliance with these measures within a community is uncertain, even when mandatory. At the beginning of the 2020-2021 academic year, the University of Liege complemented these measures, by organizing a weekly screening by saliva testing on a voluntary basis for all its workers and students. Their compliance with the different measures was necessary for effective control program and an intensive communication plan was implemented throughout the 2020-2021 academic year for that purpose METHOD AND PRINCIPAL FINDINGS: An online survey was launched upon the implementation of the saliva testing in order (i) to assess the level of acceptance of the different measures by the university workers and students and (ii) to identify the factors determining their acceptance (based on the Health Belief Model) and their reported level of implementation. A total of 921 responses was received and analysed by sub-group comparison, structural equation modelling and multivariable ordinal logistic regression. Health motivation, susceptibility, severity and perception of benefits were identified as the key determinants of protective measures acceptance CONCLUSION AND SIGNIFICANCE: In order to influence positively these mental constructs and to increase the level of implementation of control measures, it is therefore recommended to raise the awareness of the university workers and students about their self and collective responsibility to protect themselves and the population at risk that can be severely affected by the disease. The non-medical faculties (i.e. the Faculty of Medicine and the Faculty of Veterinary Medicine excluded) should be specifically targeted as their heath motivation was significantly lower. This survey demonstrates that the risk mitigation strategies against COVID-19 should integrate the importance of individual perception. The methodology developed in this survey can be generalised in space and time, in different contexts.
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- 2021
30. Review for 'Soil carbon persistence governed by plant input and mineral protection at regional and global scales'
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Sébastien Fontaine
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Mineral ,Ecology ,Environmental science ,Soil carbon ,Persistence (computer science) - Published
- 2021
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31. Soil carbon stocks after conversion of Amazonian tropical forest to grazed pasture : importance of deep soil layers
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Catherine Picon-Cochard, Sébastien Fontaine, Camille Dezécache, Lise Ponchant, J. F. Soussana, Vincent Freycon, Vincent Blanfort, Clément Stahl, Katja Klumpp, Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad), University of Antwerp (UA), UR 0874 Unité de recherche sur l'Ecosystème Prairial, Institut National de la Recherche Agronomique (INRA)-Unité de recherche sur l'Ecosystème Prairial (UREP)-Ecologie des Forêts, Prairies et milieux Aquatiques (EFPA), Institut National de la Recherche Agronomique (INRA), Collège de Direction (CODIR), Systèmes d'élevage méditerranéens et tropicaux (UMR SELMET), Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Institut National de la Recherche Agronomique (INRA)-Centre international d'études supérieures en sciences agronomiques (Montpellier SupAgro)-Institut national d’études supérieures agronomiques de Montpellier (Montpellier SupAgro), and Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)
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010504 meteorology & atmospheric sciences ,Soil biodiversity ,C3 contribution ,Deep soil C ,forêt tropicale ,Carbon sequestration ,01 natural sciences ,K01 - Foresterie - Considérations générales ,Milieux et Changements globaux ,2. Zero hunger ,Global and Planetary Change ,Utilisation des terres ,C3 conrtribution ,deep soil C ,native forest ,old pasture ,mixed-grass pasture ,Pâturages ,Soil classification ,04 agricultural and veterinary sciences ,Mixed-grass pasture ,Chemistry ,séquestration du carbone ,Forêt ,Soil horizon ,Écosystème forestier ,P01 - Conservation de la nature et ressources foncières ,Native forest ,P33 - Chimie et physique du sol ,[SDE.MCG]Environmental Sciences/Global Changes ,No-till farming ,Matière organique du sol ,Plante d'abroutissement ,Couverture végétale ,Plante fourragère ,Biology ,0105 earth and related environmental sciences ,Topsoil ,Soil organic matter ,Old pasture ,L01 - Élevage - Considérations générales ,Soil carbon ,15. Life on land ,Déboisement ,Agronomy ,040103 agronomy & agriculture ,0401 agriculture, forestry, and fisheries ,Environmental science ,Cycle du carbone - Abstract
Altres ajuts: these projects are co-funded by European regional development fund (ERDF / FEDER, 2007-2013). Recent studies suggest that carbon (C) is stored in the topsoil of pastures established after deforestation. However, little is known about the long-term capacity of tropical pastures to sequester C in different soil layers after deforestation. Deep soil layers are generally not taken into consideration or are underestimated when C storage is calculated. Here we show that in French Guiana, the C stored in the deep soil layers contributes significantly to C stocks down to a depth of 100 cm and that C is sequestered in recalcitrant soil organic matter in the soil below a depth of 20 cm. The contribution of the 50-100 cm soil layer increased from 22 to 31 % with the age of the pasture. We show that long-term C sequestration in C4 tropical pastures is linked to the development of C3 species (legumes and shrubs), which increase both inputs of N into the ecosystem and the C:N ratio of soil organic matter. The deep soil under old pastures contained more C3 carbon than the native forest. If C sequestration in the deep soil is taken into account, our results suggest that the soil C stock in pastures in Amazonia would be higher with sustainable pasture management, in particular by promoting the development of legumes already in place and by introducing new species.
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- 2021
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32. A Comparative Study of Agroecological Intensification Across Diverse European Agricultural Systems to Assess Soil Structure and Carbon Dynamics
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Modupe Olufemi Doyeni, Grazina Kadziene, Simona Pranaitiene, Alvyra Slepetiene, Aida Skersiene, Arman Shamshitov, Alessandra Trinchera, Dylan Warren Raffa, Elena Testani, Sebastien Fontaine, Antonio Rodriguez-Hernandez, Jim Rasmussen, Sara Sánchez-Moreno, Marjoleine Hanegraaf, Akin Un, Simon Sail, and Skaidre Suproniene
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aggregate stability ,agroecological intensification ,microbial biomass carbon ,soil carbon ,water extractable organic carbon ,Agriculture - Abstract
Continuous agricultural activities lead to soil organic carbon (SOC) depletion, and agroecological intensification practices (i.e., reduced soil disturbance and crop diversification) have been suggested as strategies to increase SOC storage. The study aims to assess the effect of agroecological intensification levels (lower (T1) and highest (T2)) on the soil C pool and aggregate stability and validate the correlation between different variables compared to the control (lowest/none (T3), where agroecological intensification was not applied. The C-stock, soil microbial biomass carbon (SMB-C), SOC, water extractable organic carbon (WEOC) in bulk soil, fine and coarse soil aggregates, and water-stable aggregates (WSA) were measured during maximum nutrient uptake in plants under diversified agroecological practices across different environmental conditions (core sites: Italy (CS1), France (CS2), Denmark (CS4), Spain (CS5), Netherlands (CS6), Lithuania (CS7), Turkey (CS8), and Belgium (CS9)). The soil aggregate stability varied among the CSs and treatments. At sites CS7 and CS9, WSA was higher in T1 and T2 compared to the control; a similar trend was observed at other sites, except CS1. SMB-C differed among the core sites, with the lowest value obtained in CS5 (52.3 μg g−1) and the highest in CS6 (455.1 μg g−1). The highest average contents of SOC and WEOC were obtained in bulk soil at CS2 (3.1 % and 0.3 g kg−1 respectively). Positive and statistically significant (p < 0.001) correlations were detected among all variables tested with SOC in bulk soil and WSA. This study demonstrates the significance of agroecological practices in improving soil carbon stock and optimizing plant–soil–microbe interactions.
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- 2024
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33. What model for the target rate
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Jean-Sébastien Fontaine, Jianjian Jin, and Bruno Feunou
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Inflation ,Economics and Econometrics ,media_common.quotation_subject ,Financial market ,Linear model ,Probability and statistics ,Upper and lower bounds ,Interest rate ,Unemployment ,Econometrics ,Volatility (finance) ,Social Sciences (miscellaneous) ,Analysis ,media_common ,Mathematics - Abstract
The Federal Reserve target rate has a lower bound. Changes to the target rate occur with discrete increments. Using out-of-sample forecasts of the target rate, we evaluate models incorporating these two realistic non-linear features. Incorporating these features mitigates in-sample over-fitting and improves out-of-sample forecast accuracy of the target rate level and volatility. A model with these features performs better relative to the linear models because (i) it produces stronger responses of forecasts to inflation and unemployment and a weaker response to lagged target rate, and because (ii) it yields very different forecast distributions when the target rate is close to the lower bound.
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- 2020
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34. Succinate detection using in vivo 1H-MR spectroscopy identifies germline and somatic SDHx mutations in paragangliomas
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Pierre Rustin, Sébastien Fontaine, Judith Favier, Alexandre Bellucci, Anne-Paule Gimenez-Roqueplo, Paule Bénit, Bertrand Tavitian, Lionel Groussin, Nelly Burnichon, Olivier Clément, Tchao Meatchi, Charlotte Lussey-Lepoutre, Alexandre Buffet, Tom Drossart, Laurence Amar, Favier, Judith, Sorbonne Université (SU), CHU Pitié-Salpêtrière [AP-HP], Assistance publique - Hôpitaux de Paris (AP-HP) (AP-HP)-Sorbonne Université (SU), Paris-Centre de Recherche Cardiovasculaire (PARCC (UMR_S 970/ U970)), Hôpital Européen Georges Pompidou [APHP] (HEGP), Assistance publique - Hôpitaux de Paris (AP-HP) (AP-HP)-Hôpitaux Universitaires Paris Ouest - Hôpitaux Universitaires Île de France Ouest (HUPO)-Assistance publique - Hôpitaux de Paris (AP-HP) (AP-HP)-Hôpitaux Universitaires Paris Ouest - Hôpitaux Universitaires Île de France Ouest (HUPO)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Université Paris Cité (UPCité), Assistance publique - Hôpitaux de Paris (AP-HP) (AP-HP)-Hôpitaux Universitaires Paris Ouest - Hôpitaux Universitaires Île de France Ouest (HUPO), Maladies neurodéveloppementales et neurovasculaires (NeuroDiderot (UMR_S_1141 / U1141)), Institut National de la Santé et de la Recherche Médicale (INSERM)-Université Paris Cité (UPCité), Institut Cochin (IC UM3 (UMR 8104 / U1016)), Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-Université Paris Cité (UPCité), Hôpital Cochin [AP-HP], Assistance publique - Hôpitaux de Paris (AP-HP) (AP-HP), and Université Paris Cité (UPCité)
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Succinate ,SDHB ,Germline ,030218 nuclear medicine & medical imaging ,Pheochromocytoma ,03 medical and health sciences ,paraganglioma ,0302 clinical medicine ,Germline mutation ,Paraganglioma ,medicine ,Radiology, Nuclear Medicine and imaging ,[SDV.MHEP.EM] Life Sciences [q-bio]/Human health and pathology/Endocrinology and metabolism ,biology ,business.industry ,Succinate dehydrogenase ,General Medicine ,[SDV.MHEP.EM]Life Sciences [q-bio]/Human health and pathology/Endocrinology and metabolism ,medicine.disease ,Succinate Dehydrogenase ,030220 oncology & carcinogenesis ,Cancer research ,biology.protein ,Biomarker (medicine) ,SDHD ,Magnetic resonance Spectroscopy ,business - Abstract
International audience; Purpose: Germline mutations in genes encoding succinate dehydrogenase (SDH) are frequent in patients with pheochromocytoma and paraganglioma (PPGL). They lead to SDH inactivation, mediating a massive accumulation of succinate, which constitutes a highly specific biomarker of SDHx-mutated tumors when measured in vitro. In a recent pilot study, we showed that magnetic resonance spectroscopy (1H-MRS) optimized for succinate detection (SUCCES) could detect succinate in vivo in both allografted mouse models and PPGL patients. The objective of this study was to prospectively assess the diagnostic performances of 1H-MRS SUCCES sequence for the identification of SDH deficiency in PPGL patients.Methods: Forty-nine patients presenting with 50 PPGLs were prospectively enrolled in our referral center for 1H-MRS SUCCES. Two observers blinded to the clinical characteristics and genetic status analyzed the presence of a succinate peak and confronted the results to a composite gold standard combining PPGL genetic testing and/or in vitro protein analyses in the tumor.Results: A succinate peak was observed in 20 tumors, all of which had proven SDH deficiency using the gold standard (17 patients with germline SDHx mutations, 2 with a somatic SDHD mutation, and 1 with negative SDHB IHC and SDH loss of function). A false negative result was observed in 3 tumors. Sensitivity, specificity, positive predictive value, negative predictive value, and accuracy of 1H-MRS SUCCES were respectively 87%, 100%, 100%, 90%, and 94%.Conclusions: Detection of succinate using 1H-MRS is a highly specific and sensitive hallmark of SDH-deficiency in PPGLs.
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- 2020
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35. Succinate detection using in vivo
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Charlotte, Lussey-Lepoutre, Alexandre, Bellucci, Nelly, Burnichon, Laurence, Amar, Alexandre, Buffet, Tom, Drossart, Sébastien, Fontaine, Olivier, Clement, Paule, Benit, Pierre, Rustin, Lionel, Groussin, Tchao, Meatchi, Anne-Paule, Gimenez-Roqueplo, Bertrand, Tavitian, and Judith, Favier
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Paraganglioma ,Succinate Dehydrogenase ,Mice ,Magnetic Resonance Spectroscopy ,Adrenal Gland Neoplasms ,Succinic Acid ,Animals ,Humans ,Pilot Projects ,Germ-Line Mutation - Abstract
Germline mutations in genes encoding succinate dehydrogenase (SDH) are frequent in patients with pheochromocytoma and paraganglioma (PPGL). They lead to SDH inactivation, mediating a massive accumulation of succinate, which constitutes a highly specific biomarker of SDHx-mutated tumors when measured in vitro. In a recent pilot study, we showed that magnetic resonance spectroscopy (Forty-nine patients presenting with 50 PPGLs were prospectively enrolled in our referral center forA succinate peak was observed in 20 tumors, all of which had proven SDH deficiency using the gold standard (17 patients with germline SDHx mutations, 2 with a somatic SDHD mutation, and 1 with negative SDHB IHC and SDH loss of function). A false negative result was observed in 3 tumors. Sensitivity, specificity, positive predictive value, negative predictive value, and accuracy ofDetection of succinate using
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- 2019
36. Anchor Selection Algorithm for Mobile Indoor Positioning using WSN with UWB Radio
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Antoine Courtay, Arnaud Carer, Olivier Berder, Sébastien Fontaine, Mickael Le Gentil, Pascal Scalart, Algorithmes et architectures adaptatifs pour les systèmes sans-fils efficaces en énergie (GRANIT), ARCHITECTURE (IRISA-D3), Institut de Recherche en Informatique et Systèmes Aléatoires (IRISA), CentraleSupélec-Télécom Bretagne-Université de Rennes 1 (UR1), Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES)-Institut National de Recherche en Informatique et en Automatique (Inria)-École normale supérieure - Rennes (ENS Rennes)-Université de Bretagne Sud (UBS)-Centre National de la Recherche Scientifique (CNRS)-Institut National des Sciences Appliquées - Rennes (INSA Rennes), Institut National des Sciences Appliquées (INSA)-Université de Rennes (UNIV-RENNES)-Institut National des Sciences Appliquées (INSA)-CentraleSupélec-Télécom Bretagne-Université de Rennes 1 (UR1), Institut National des Sciences Appliquées (INSA)-Université de Rennes (UNIV-RENNES)-Institut National des Sciences Appliquées (INSA)-Institut de Recherche en Informatique et Systèmes Aléatoires (IRISA), Institut National des Sciences Appliquées (INSA)-Université de Rennes (UNIV-RENNES)-Institut National des Sciences Appliquées (INSA), Université de Rennes 1 (UR1), Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES)-Institut National des Sciences Appliquées - Rennes (INSA Rennes), Institut National des Sciences Appliquées (INSA)-Université de Rennes (UNIV-RENNES)-Institut National des Sciences Appliquées (INSA)-Université de Bretagne Sud (UBS)-École normale supérieure - Rennes (ENS Rennes)-Institut National de Recherche en Informatique et en Automatique (Inria)-CentraleSupélec-Centre National de la Recherche Scientifique (CNRS)-IMT Atlantique Bretagne-Pays de la Loire (IMT Atlantique), Institut Mines-Télécom [Paris] (IMT)-Institut Mines-Télécom [Paris] (IMT), Université de Rennes (UR)-Institut National des Sciences Appliquées - Rennes (INSA Rennes), Institut National des Sciences Appliquées (INSA)-Institut National des Sciences Appliquées (INSA)-Université de Bretagne Sud (UBS)-École normale supérieure - Rennes (ENS Rennes)-Institut National de Recherche en Informatique et en Automatique (Inria)-Télécom Bretagne-CentraleSupélec-Centre National de la Recherche Scientifique (CNRS)-Université de Rennes (UR)-Institut National des Sciences Appliquées - Rennes (INSA Rennes), Institut National des Sciences Appliquées (INSA)-Institut National des Sciences Appliquées (INSA)-Université de Bretagne Sud (UBS)-École normale supérieure - Rennes (ENS Rennes)-Institut National de Recherche en Informatique et en Automatique (Inria)-Télécom Bretagne-CentraleSupélec-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche en Informatique et Systèmes Aléatoires (IRISA), Institut National des Sciences Appliquées (INSA)-Institut National des Sciences Appliquées (INSA)-Université de Bretagne Sud (UBS)-École normale supérieure - Rennes (ENS Rennes)-Institut National de Recherche en Informatique et en Automatique (Inria)-Télécom Bretagne-CentraleSupélec-Centre National de la Recherche Scientifique (CNRS), and Institut National des Sciences Appliquées (INSA)-Institut National des Sciences Appliquées (INSA)-Université de Bretagne Sud (UBS)-École normale supérieure - Rennes (ENS Rennes)-Institut National de Recherche en Informatique et en Automatique (Inria)-CentraleSupélec-Centre National de la Recherche Scientifique (CNRS)-IMT Atlantique (IMT Atlantique)
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Chipset ,Computer science ,business.industry ,020208 electrical & electronic engineering ,Testbed ,Real-time computing ,Ultra-wideband ,020206 networking & telecommunications ,02 engineering and technology ,law.invention ,Bluetooth ,[SPI]Engineering Sciences [physics] ,law ,0202 electrical engineering, electronic engineering, information engineering ,Global Positioning System ,Wireless ,business ,Trilateration ,Wireless sensor network ,[SPI.SIGNAL]Engineering Sciences [physics]/Signal and Image processing - Abstract
International audience; Positioning a person or an object has become essential in many applications. It already exists solutions for outdoor positioning such as satellite based techniques (i.e. GPS) but indoor positioning still remains a great challenge for applications like sports monitoring, contextual visits of museum, Building Information Modeling (BIM) or automated drone missions. Classical approaches using radio communication such as WiFi, Bluetooth, ZigBee only give an accuracy of approximately 2.5 meters when the mobile is static, of course worse when moving. Recently some new radio communication chipsets have emerged based on Ultra Wide Band (UWB) communications. UWB allows accurate Time Of Flight (TOF) measurements, and thus distances estimations between nodes equipped with. A positioning algorithm named Best Anchor Selection for Trilateration (BAST) based on position prediction and noise estimation is proposed. Then a wearable, light and low power Wireless Sensor Network (WSN) prototype (named Zyggie) including an UWB chipset has been developed for algorithms comparison. Finally, an experimental testbed using real cases experiments shows that BAST can give from 1.26 up to 4.17 times better accuracy than low complexity state of the art algorithms when the mobile/person is in movement (e.g. tennis player).
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- 2019
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37. Implied volatility and skewness surface
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Bruno Feunou, Jean-Sébastien Fontaine, and Roméo Tédongap
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050208 finance ,05 social sciences ,Economics, Econometrics and Finance (miscellaneous) ,Implied volatility ,Skewness ,Financial models with long-tailed distributions and volatility clustering ,Homoscedasticity ,0502 economics and business ,Statistics ,Econometrics ,Forward volatility ,Economics ,Volatility smile ,Capital asset pricing model ,050207 economics ,Volatility (finance) ,Finance - Abstract
The Homoscedastic Gamma (HG) model characterizes the distribution of returns by its mean, variance and an independent skewness parameter. The HG model preserves the parsimony and the closed form of the Black–Scholes–Merton (BSM) while introducing the implied volatility (IV) and skewness surface. Varying the skewness parameter of the HG model can restore the symmetry of IV curves. Practitioner’s variants of the HG model improve pricing (in-sample and out-of-sample) and hedging performances relative to practitioners’ BSM models, with as many or less parameters. The pattern of improvements in Delta-Hedged gains across strike prices accord with predictions from the HG model. These results imply that expanding around the Gaussian density does not offer sufficient flexibility to match the skewness implicit in options. Consistent with the model, we also find that conditioning on implied skewness increases the predictive power of the volatility spread for excess returns.
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- 2017
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38. Une approche interdisciplinaire
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Mireille Tremblay, Michel Mercier, Sébastien Fontaine, Jean-Philippe Cobbaut, Henri-Jacques Stiker, and Cédric Routier
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De maniere generale, le concept de citoyennete a considerablement evolue. En ce qui concerne le handicap, le passage d’un modele medical a un modele social et ensuite a un point de vue psychosocial et pluridisci-plinaire a transforme les modalites d’intervention. Les personnes en situation de handicap de beneficiaires-usagers sont devenues des beneficiaires-experts, socialement incluses plutot qu’inserees. Une justice sociale reellement inclusive ne peut s’instaurer qu’a travers des processus d’apprentissages de l’ensemble des personnes concernees, usagers, professionnels, chercheurs, experts, politiques.
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- 2016
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39. Outils de citoyenneté ?
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Céline Hupet, Catherine Bringiers, Michel Mercier, Marie-Martine Gernay, Sébastien Fontaine, and Lucie Taquin
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Etre citoyen, c’est beneficier des apports des technologies de l’information et de la communication (TIC), mais c’est aussi etre capable de les maitriser comme outil d’expression et de communication sociale et de lutte contre la fracture numerique notamment dans le champ du handicap. Ces technologies peuvent servir soit d’outils pour la readaptation fonctionnelle, soit d’outils d’expression pour les personnes ayant des difficultes cognitives, soit d’outils d’expression d’opinions pour les personnes tributaires de deficience sensorielle.
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- 2016
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40. Soil Respiration Components and their Temperature Sensitivity Under Chemical Fertilizer and Compost Application: The Role of Nitrogen Supply and Compost Substrate Quality
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Sébastien Fontaine, Zengming Chen, Weixin Ding, Weijin Wang, Yehong Xu, Michael J. Castellano, Chinese Acad Sci, Inst Soil Sci, State Key Lab Soil & Sustainable Agr, Nanjing, Jiangsu, Peoples R China, Partenaires INRAE, Jiangsu Acad Agr Sci, Inst Agr Resources & Environm, Nanjing, Jiangsu, Peoples R China, Iowa State Univ, Dept Agron, Ames, IA USA, Unité Mixte de Recherche sur l'Ecosystème Prairial - UMR (UREP), Institut National de la Recherche Agronomique (INRA)-VetAgro Sup - Institut national d'enseignement supérieur et de recherche en alimentation, santé animale, sciences agronomiques et de l'environnement (VAS), and Griffith Univ, Environm Futures Res Inst, Nathan, Qld, Australia
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Atmospheric Science ,010504 meteorology & atmospheric sciences ,[SDE.MCG]Environmental Sciences/Global Changes ,Q10 ,Soil Science ,chemistry.chemical_element ,application d'engrais chimiques et de compost ,Aquatic Science ,engineering.material ,01 natural sciences ,complex mixtures ,respiration hétérotrophe ,Soil respiration ,chemistry.chemical_compound ,Lignin ,0105 earth and related environmental sciences ,Water Science and Technology ,2. Zero hunger ,Ecology ,Compost ,fungi ,respiration autotrophique ,Paleontology ,Substrate (chemistry) ,Forestry ,15. Life on land ,Nitrogen ,6. Clean water ,Horticulture ,chemistry ,13. Climate action ,engineering ,Urea ,Fertilizer - Abstract
International audience; Understanding autotrophic (Ra) and heterotrophic (Rh) components of soil respiration (Rs) and their temperature sensitivity (Q(10)) is critical for predictingsoil carbon (C) cycle and its feedback to climate change. In agricultural systems, these processes can be considerably altered by chemical fertilizer and compost application due to changes in nitrogen (N) supply and substrate quality (decomposability). We conducted a field experiment including control, urea, and four compost treatments. Ra and Rh were separated using the root exclusion method. Composts were characterized by chemical analyses, C-13 solid-state nuclear magnetic resonance, and lignin monomers. Annual cumulative Ra, along with root biomass, increased with soil mineral N, while Rh was suppressed by excessive N supply. Thus, Ra was stimulated but Rh was decreased by urea alone application. Annual Rh was increased by application of compost, especially that containing most lignin vanillyl and syringyl units, O-alkyl C, di-O-alkyl C, and manganese. However, during the initial period, Rh was most effectively stimulated by the compost containing most carbohydrates, lignin cinnamyl units, phenolic C, and calcium. Ra was mediated by N release from compost decomposition and thus exhibited similar responses to compost quality as Rh. The Rh Q(10) was reduced, while Ra Q(10)was increased by chemical fertilizer and compost application. Moreover, the Rh Q(10) negatively related to soil mineral N supply and compost indicators referring to high substrate quality. Overall, our results suggest that N supply and substrate quality played an important role in regulating soil C flux and its response to climate warming.
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- 2019
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41. Long Run Impact of Macro News on Treasury Bond Yields
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Guillaume Roussellet, Jean-Sébastien Fontaine, and Bruno Feunou
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History ,Polymers and Plastics ,media_common.quotation_subject ,Bond ,Monetary policy ,Monetary economics ,Industrial and Manufacturing Engineering ,Interest rate ,Treasury ,Economic data ,Bond valuation ,Short rate ,Variance decomposition of forecast errors ,Economics ,Business and International Management ,media_common - Abstract
Does the macroeconomic information in data releases shape bond yields in the long-term? We offer evidence that the new information embedded in high-frequency bond price changes around the release of economic data explains at most 40% of yields fluctuations at longer horizons, and as low as 20% in the long run. From the perspective of a theoretical model in which investors learn from the releases about the path of future short rates, our empirical findings suggest that investors’ expectations about future monetary policy actions are updated largely based on information revealed outside of the releases. Our results cast doubts on a transparent monetary policy response function linking macroeconomic surprises to the path of interest rates.
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- 2019
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42. Plant economic strategies of grassland species control soil carbon dynamics through rhizodeposition
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Vida Rahimian, Ludovic Henneron, Camille Cros, Catherine Picon-Cochard, Sébastien Fontaine, Unité Mixte de Recherche sur l'Ecosystème Prairial - UMR (UREP), Institut National de la Recherche Agronomique (INRA)-VetAgro Sup - Institut national d'enseignement supérieur et de recherche en alimentation, santé animale, sciences agronomiques et de l'environnement (VAS), Swedish University of Agricultural Sciences (SLU), ANR 14-CE01-0004 and ANR-11-LABX-0002-01, VetAgro Sup - Institut national d'enseignement supérieur et de recherche en alimentation, santé animale, sciences agronomiques et de l'environnement (VAS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), VetAgro Sup - Institut national d'enseignement supérieur et de recherche en alimentation, santé animale, sciences agronomiques et de l'environnement (VAS), and Université Clermont Auvergne (UCA)
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0106 biological sciences ,interaction sol plante ,[SDE.MCG]Environmental Sciences/Global Changes ,décomposition ,Plant Science ,fonctionnement des écosystèmes ,Photosynthesis ,01 natural sciences ,Grassland ,traitement des feuilles ,photosynthèse ,Ecology, Evolution, Behavior and Systematics ,2. Zero hunger ,processus rhizosphériques ,geography ,geography.geographical_feature_category ,photosynthesis ,Ecology ,04 agricultural and veterinary sciences ,Soil carbon ,15. Life on land ,Decomposition ,traits des feuilles et des racines ,les interactions plante-sol (souterrain) ,Agronomy ,effet d'amorçage de la rhizosphère ,040103 agronomy & agriculture ,root treatment ,0401 agriculture, forestry, and fisheries ,Environmental science ,traitement des racines ,010606 plant biology & botany - Abstract
The plant economics spectrum is increasingly recognized as a major determinant of plant species effects on terrestrial ecosystem functioning related to carbon cycling. However, the role of plant economic strategies in the effects of living root activity on soil organic carbon (SOC) dynamics through rhizodeposition remains unexplored, despite SOC being the largest terrestrial carbon pool. Using a continuous C-13-labelling method allowing partitioning of plant and soil sources to carbon fluxes and pools, we studied here the linkages between plant economic strategies and SOC cycling processes in a 'common garden' greenhouse experiment. It includes a panel of 12 grassland species selected along a gradient of economic traits and belonging to three functionnal groups (C3 grasses, forbs and legumes). All species induced an acceleration of native SOC mineralization but this rhizosphere priming effect (RPE) substantially differed across species and varied eleven-fold by the end of the experiment (from +26% to +295% relative to unplanted soil). Interspecific variation in RPE was primarily linked to plant photosynthetic activity associated to species economic strategies of light and CO2 resource acquisition and processing. Fast-growing acquisitive species, such as legumes, featured large RPE, in relation with their high canopy photosynthesis coupled to high leaf photosynthetic capacity and large net primary productivity allocated above-ground. This large RPE was further associated with high root metabolic activity, rhizodeposition and soil microbial activity. In contrast, fine-root growth and economic traits related to soil resource foraging ability were poor predictors of RPE. The formation of new root-derived SOC varied nine-fold across species and was similarly positively related to the net primary productivity allocated above-ground. Fast-growing acquisitive species with a high photosynthetic activity induced a disproportionately large RPE relative to SOC formation. Synthesis. Overall, our study demonstrates that rhizodeposition is a major mechanism through which plant economic strategies of grassland species control soil carbon dynamics. Acquisitive versus conservative species were associated with high versus low rates of photosynthesis and rhizodeposition, in turn leading to fast versus slow SOC turnover. This emphasizes the importance of considering rhizosphere processes for understanding plant species effects on soil biogeochemistry.
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- 2019
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43. Soil evaporation and organic matter turnover in the Sub-Taiga and Forest-Steppe of southwest Siberia
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Zachary Kayler, Olga Rusalimova, Bernd Zeller, Félix Brédoire, Pavel A. Barsukov, Polina Nikitich, Mark R. Bakker, Helene McMillan, Delphine Derrien, Sébastien Fontaine, Institute for Landscape Biogeochemistry, Leibniz-Zentrum für Agrarlandschaftsforschung = Leibniz Centre for Agricultural Landscape Research (ZALF), University of Idaho [Moscow, USA], Lawrence Livermore National Laboratory (LLNL), Unité de recherche Biogéochimie des Ecosystèmes Forestiers (BEF), Institut National de la Recherche Agronomique (INRA), Interactions Sol Plante Atmosphère (UMR ISPA), Institut National de la Recherche Agronomique (INRA)-Ecole Nationale Supérieure des Sciences Agronomiques de Bordeaux-Aquitaine (Bordeaux Sciences Agro), Federal Institute for Geosciences and Natural Resources (BGR), Institute of Soil Science and Agrochemistry (RISSAC), Unité Mixte de Recherche sur l'Ecosystème Prairial - UMR (UREP), and Institut National de la Recherche Agronomique (INRA)-VetAgro Sup - Institut national d'enseignement supérieur et de recherche en alimentation, santé animale, sciences agronomiques et de l'environnement (VAS)
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010504 meteorology & atmospheric sciences ,cycle de l'eau ,[SDE.MCG]Environmental Sciences/Global Changes ,lcsh:Medicine ,hydrogen isotopy ,01 natural sciences ,Article ,Carbon cycle ,Hydrology (agriculture) ,sibérie ,carbon isotopy ,Organic matter ,Milieux et Changements globaux ,lcsh:Science ,0105 earth and related environmental sciences ,carbon turnover ,évaporation ,2. Zero hunger ,chemistry.chemical_classification ,Hydrology ,changement climatique ,Multidisciplinary ,Soil organic matter ,Taiga ,lcsh:R ,04 agricultural and veterinary sciences ,Vegetation ,Soil carbon ,15. Life on land ,steppe ,chemistry ,Soil water ,040103 agronomy & agriculture ,0401 agriculture, forestry, and fisheries ,Environmental science ,lcsh:Q ,carbone du sol - Abstract
Southwest Siberia encompasses the forest-steppe and sub-taiga climatic zones and has historically been utilized for agriculture. Coinciding with predicted changes in climate for the region is the pressure of agricultural development; however, a characterization of the soil water and carbon dynamics is lacking. We assessed current soil water properties and soil organic carbon turnover in forests and grasslands for two sites that span the forest steppe and sub-taiga bioclimatic zones. Soil evaporation was 0.62 ± 0.17 mm d−1 (mean ± standard error) in grasslands and 0.45 ± 0.08 mm d−1 in the forests of the forest-steppe site. Evaporation at the sub-taiga site was 1.80 ± 1.70 mm d−1 in grasslands and 0.96 ± 0.05 mm d−1 in forest plots. Evaporation was significantly greater at the sub-taiga site than the forest-steppe site. The density of fine roots explained the soil water isotopic patterns between vegetation types and sites. We found soil organic matter turnover to be three times faster in the sub-taiga site than in the forest-steppe site. Our results show that while climate factors, in particular snow levels, between the two sites are drivers for water and carbon cycles, site level hydrology, soil characteristics, and vegetation directly interact to influence the water and carbon dynamics.
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- 2018
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44. Measuring Limits of Arbitrage in Fixed-Income Markets
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Jean-Sébastien Fontaine and Guillaume Nolin
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Estimation ,Identification (information) ,Fixed income ,Relative value ,Index (economics) ,Local volatility ,Econometrics ,Economics ,Arbitrage ,Proxy (statistics) - Abstract
An emerging literature relies on an index of limits of arbitrage in fixed-income markets. We analyze the benefits of an index that is model-free, robust and intuitive. This new index strengthens the evidence that limits of arbitrage proxy for risks priced in the cross-section of returns. Trading simulations show that the new index improves identification of limits of arbitrage because it bypasses a noisy estimation step. Relative value indices in the US, the UK, Japan, Germany, Italy, France, Switzerland and Canada exhibit strong commonality and high correlations with local volatility and funding conditions. The indices are updated regularly and available publicly.
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- 2018
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45. Catalytic power of enzymes decreases with temperature: New insights for understanding soil C cycling and microbial ecology under warming
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Laurence Andanson, Matthew D. Wallenstein, Sébastien Fontaine, Gaël Alvarez, Tanvir Shahzad, Michael Bahn, Unité Mixte de Recherche sur l'Ecosystème Prairial - UMR (UREP), Institut National de la Recherche Agronomique (INRA)-VetAgro Sup - Institut national d'enseignement supérieur et de recherche en alimentation, santé animale, sciences agronomiques et de l'environnement (VAS), UPE, European Union Reference Laboratory for equine diseases (EURL), Department of Environmental Sciences, Institute of Ecology, University of Innsbruck, and Colorado State University [Fort Collins] (CSU)
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Hot Temperature ,010504 meteorology & atmospheric sciences ,[SDE.MCG]Environmental Sciences/Global Changes ,Global Warming ,01 natural sciences ,Catalysis ,Carbon Cycle ,Soil ,Microbial ecology ,Environmental Chemistry ,Ecosystem ,Soil Microbiology ,0105 earth and related environmental sciences ,General Environmental Science ,2. Zero hunger ,chemistry.chemical_classification ,Global and Planetary Change ,Bacteria ,Ecology ,biology ,Chemistry ,Global warming ,Fungi ,04 agricultural and veterinary sciences ,Mineralization (soil science) ,15. Life on land ,Enzyme assay ,Enzymes ,Enzyme ,13. Climate action ,Environmental chemistry ,trait enzymatique ,Soil water ,040103 agronomy & agriculture ,biology.protein ,0401 agriculture, forestry, and fisheries ,dénaturation enzymatique ,Activité enzymatique ,[SDE.BE]Environmental Sciences/Biodiversity and Ecology - Abstract
International audience; Most current models of soil C dynamics predict that climate warming will accelerate soil C mineralization, resulting in a long-term CO2 release and positive feedback to global warming. However, ecosystem warming experiments show that CO2 loss from warmed soils declines to control levels within a few years. Here, we explore the temperature dependence of enzymatic conversion of polymerized soil organic C (SOC) into assimilable compounds, which is presumed the rate-limiting step of SOC mineralization. Combining literature review, modelling and enzyme assays, we stud-ied the effect of temperature on activity of enzymes considering their thermal inactivation and catalytic activity. We defined the catalytic power of enzymes (Epower) as the cumulative amount of degraded substrate by one unit of enzyme until its complete inactivation. We show a universal pattern of enzyme’s thermodynamic properties: activation energy of catalytic activity (EAcat) activation energy of ther-mal inactivation (EA inact). By investing in stable enzymes (high EA inact) having high catalytic activity (low EA cat), microorganisms may maximize the E power of their enzymes. The counterpart of such EAs ’hierarchical pattern is the higher relative temperature sensitivity of enzyme inactivation than catalysis, resulting in a reduction in Epower under warming. Our findings could explain the decrease with temperature in soil enzyme pools, microbial biomass (MB) and carbon use efficiency (CUE) reported in some warming experiments and studies monitoring the seasonal variation in soil enzymes. They also suggest that a decrease in soil enzyme pools due to their faster inactivation under warming contributes to the observed attenuation of warming effect on soil C mineralization. This testable theory predicts that the ultimate response of SOC degradation to warming can be positive or negative depending on the relative temperature response of E power and microbial production of enzymes.
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- 2018
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46. Response to Editor to the comment by SchipperSmith to our paper entitled 'Continuous soil carbon storage of old permanent pastures in Amazonia'
- Author
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Sébastien Fontaine, Lilian Blanc, Jean-François Soussana, Lise Ponchant, Catherine Picon-Cochard, Vincent Freycon, Clément Stahl, Camille Dezécache, Katja Klumpp, Benoit Burban, Vincent Blanfort, Gaël Alvarez, Damien Bonal, Marcia Mascarenhas Grise, Unité Mixte de Recherche sur l'Ecosystème Prairial - UMR (UREP), Institut National de la Recherche Agronomique (INRA)-VetAgro Sup - Institut national d'enseignement supérieur et de recherche en alimentation, santé animale, sciences agronomiques et de l'environnement (VAS), Ecologie des forêts de Guyane (UMR ECOFOG), Université des Antilles (UA)-Université de Guyane (UG)-Centre National de la Recherche Scientifique (CNRS)-AgroParisTech-Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Institut National de la Recherche Agronomique (INRA), Empresa Brasileira de Pesquisa Agropecuária (Embrapa), Ministério da Agricultura, Pecuária e Abastecimento [Brasil] (MAPA), Governo do Brasil-Governo do Brasil, Systèmes d'élevage méditerranéens et tropicaux (UMR SELMET), Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Institut National de la Recherche Agronomique (INRA)-Centre international d'études supérieures en sciences agronomiques (Montpellier SupAgro)-Institut national d’études supérieures agronomiques de Montpellier (Montpellier SupAgro), Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro), Agrosystèmes tropicaux (ASTRO), Institut National de la Recherche Agronomique (INRA), Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad), Ecologie et Ecophysiologie Forestières [devient SILVA en 2018] (EEF), Institut National de la Recherche Agronomique (INRA)-Université de Lorraine (UL), and ANR-14-EBID-0002,BASIL,Landscape-scale biodiversity and the balancing of provisioning, regulating and supporting ecosystem services(2014)
- Subjects
L01 - Elevage - Considérations générales ,010504 meteorology & atmospheric sciences ,[SDV]Life Sciences [q-bio] ,01 natural sciences ,Grassland ,[SHS]Humanities and Social Sciences ,Soil ,K01 - Foresterie - Considérations générales ,chronosequence study ,General Environmental Science ,2. Zero hunger ,Global and Planetary Change ,geography.geographical_feature_category ,Ecology ,Amazon rainforest ,Pâturages ,04 agricultural and veterinary sciences ,séquestration du carbone ,Forêt ,[SDE]Environmental Sciences ,Écosystème ,P33 - Chimie et physique du sol ,China ,Eddy covariance ,chemistry.chemical_element ,deep soil c ,eddy covariance ,Environmental Chemistry ,[SDV.BV]Life Sciences [q-bio]/Vegetal Biology ,[INFO]Computer Science [cs] ,0105 earth and related environmental sciences ,geography ,continuous c accumulation ,Forestry ,Soil carbon ,15. Life on land ,Déboisement ,Carbon ,chemistry ,13. Climate action ,040103 agronomy & agriculture ,0401 agriculture, forestry, and fisheries ,Environmental science ,Cycle du carbone - Abstract
International audience; First of all, we recall that the message conveyed in our paper is that Amazonian forest and old tropical pastures act as C sinks by accumulating recurrently (continuously) C in biomass and soil. We do not support the idea that deforestation increases soil C as suggested in the title of Schipper and Smith comment. In our study, pasture C sink was estimated by two independent methods: eddy covariance measurements (Eddy) and a 36-years chronosequence analyzing soil organic C stock to a depth of 100 cm (Chrono). Both methods provide evidence that pastures ≥24 years can restore all or part of C sink of Amazonian forest if sustainable management is applied. Realizing that old pastures accumulate C is crucial in the Amazonian context where pastures are currently replaced by intensive crops (e.g. soybean) inducing a possible loss of this C sink.
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- 2017
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47. Effect of nutrients availability and long-term tillage on priming effect and soil C mineralization
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Jean-Pierre Cohan, Bassem Dimassi, Nazia Perveen, Bruno Mary, Sébastien Fontaine, Sandrine Revaillot, Agroressources et Impacts environnementaux (AgroImpact), Institut National de la Recherche Agronomique (INRA), UR 0874 Unité de recherche sur l'Ecosystème Prairial, Institut National de la Recherche Agronomique (INRA)-Unité de recherche sur l'Ecosystème Prairial (UREP)-Ecologie des Forêts, Prairies et milieux Aquatiques (EFPA), ARVALIS - Institut du végétal [Paris], UR 1158 Agroressources et impacts environnementaux, and Institut National de la Recherche Agronomique (INRA)-Agroressources et impacts environnementaux (AgroImpact)-Environnement et Agronomie (E.A.)-Biologie et Amélioration des Plantes (BAP)
- Subjects
priming effect ,2. Zero hunger ,chemistry.chemical_classification ,microbial biomass ,Soil organic matter ,Soil Science ,Soil chemistry ,nutrient mining ,no till ,Mineralization (soil science) ,Soil carbon ,15. Life on land ,soil organic carbon mineralization ,Microbiology ,Soil conditioner ,full inversion tillage ,No-till farming ,Agronomy ,chemistry ,Soil horizon ,Organic matter ,[SDE.BE]Environmental Sciences/Biodiversity and Ecology - Abstract
Agricultural management practices including soil tillage exert strong control on soil organic matter (SOM) turnover and its interactions with global C cycle through different mechanisms. One control mechanism is the priming effect (PE) which consists in stimulating SOM mineralization with the addition of fresh, energetic plant material. In this study, we quantified C mineralization and PE in soils sampled in two contrasted long-term (40 years) tillage treatments which deeply modified soil properties (e.g. organic C concentration, microbial biomass, pH). We hypothesized that soil tillage might affect these processes through changes in C addition rates, nutrient availability, and long-term variations in SOM content and microbial communities. We investigated the relationship between PE intensity, tillage and nutrients availability in soil samples taken in no till (NT) and full inversion tillage (FIT) in two layers (0–5 and 15–20 cm). Soils were incubated with or without addition of 13 C labeled cellulose and mineral nutrients. Potential C mineralization and primed C were measured during 262 days. Unlabeled soil microbial biomass C was determined at the end of the experiment to separate apparent and real priming effect. Basal cumulative C mineralization in the control soil ranged from 363 to 1490 mg kg −1 soil at day 262. It was strongly correlated with soil organic carbon (SOC) concentration. Specific mineralization rates were 44.8 and 68.8 g kg −1 SOC in the 0–5 cm layer for the FIT and NT treatments, respectively and were strongly linked with the particulate organic matter content ( r = 0.99***). These results suggest that SOC was more active in the upper layer of the NT treatment due to the high concentration of readily-decomposable, particulate organic matter. The cellulose was entirely metabolized after 60 days and its kinetics of mineralization was affected neither by tillage, depth nor nutrients. The percentage of cellulose C released as CO 2 represented 55–61% of the added cellulose-C at day 262. A positive PE was found in all treatments and its kinetics was parallel to that of cellulose mineralization. The cumulative PE significantly varied with nutrients level but not tillage, ranging from 73 to 78 mg kg −1 under high nutrients level and from 116 to 136 mg kg −1 in low nutrients level. No significant differences were found in unlabeled microbial biomass C between control and amended soil, suggesting no apparent priming effect. We conclude that the priming was mainly controlled by nutrient availability but not tillage, in spite of strong tillage-induced changes in SOC concentration and microbial biomass. Since PE is known to depend on C addition rate, tillage is expected to affect in situ PE through variations in the ratio of fresh carbon to nutrient concentration along the soil profile.
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- 2014
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48. Thyroid tuberculosis: A new case and review of the literature
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Philippe Caron, Sébastien Fontaine, Jean Le Grusse, and Julie Lourtet-Hascoet
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Pathology ,medicine.medical_specialty ,Tuberculosis ,Endocrine diagnosis ,biology ,business.industry ,Endocrinology, Diabetes and Metabolism ,Thyroid ,MEDLINE ,Nodule (medicine) ,General Medicine ,biology.organism_classification ,medicine.disease ,Mycobacterium tuberculosis ,Endocrinology ,medicine.anatomical_structure ,Medicine ,Endocrine Drug Therapy ,medicine.symptom ,business - Published
- 2015
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49. Non-Markov Gaussian Term Structure Models: The Case of Inflation
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Bruno Feunou and Jean-Sébastien Fontaine
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Inflation ,Economics and Econometrics ,Markov chain ,Gaussian ,Yield (finance) ,media_common.quotation_subject ,Function (mathematics) ,Astrophysics::Cosmology and Extragalactic Astrophysics ,Conditional expectation ,Term (time) ,symbols.namesake ,Accounting ,symbols ,Econometrics ,Markov property ,Finance ,Mathematics ,media_common - Abstract
Standard Gaussian term structure models impose the Markov property: the conditional mean is a function of the risk factors. We relax this assumption and consider models where yields are linear in the conditional mean (but not in the risk factors). To illustrate, yields should span expected inflation but not inflation. Second, expected and surprise yield changes can have opposite contemporaneous effects on expected inflation. Third, the survey forecasts and inflation rate can both be in the state. These three features are inconsistent with the Markov assumption. These effects matter empirically in the USA and in Canada.
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- 2014
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50. An unknown oxidative metabolism substantially contributes to soil CO2 emissions
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Aurélie Comby, Tanvir Shahzad, Vincent Maire, Gaël Alvarez, J Colombet, Sébastien Fontaine, A. C. Lehours, M Joly, Véronique Perrier, Romain Despinasse, and Eric Dubreucq
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chemistry.chemical_classification ,010504 meteorology & atmospheric sciences ,Ecology ,04 agricultural and veterinary sciences ,Metabolism ,Biology ,01 natural sciences ,Carbon cycle ,Soil respiration ,Enzyme ,chemistry ,13. Climate action ,Environmental chemistry ,Respiration ,Soil water ,040103 agronomy & agriculture ,Extracellular ,0401 agriculture, forestry, and fisheries ,Ecology, Evolution, Behavior and Systematics ,Intracellular ,0105 earth and related environmental sciences ,Earth-Surface Processes - Abstract
The respiratory release of CO2 from soils is a major determinant of the global carbon cycle. It is traditionally considered that this respiration is an intracellular metabolism consisting of complex biochemical reactions carried out by numerous enzymes and co-factors. Here we show that the endoenzymes released from dead organisms are stabilised in soils and have access to suitable substrates and co-factors to permit function. These enzymes reconstitute an extracellular oxidative metabolism (EXOMET) that may substantially contribute to soil respiration (16 to 48% of CO2 released from soils in the present study). EXOMET and respiration from living organisms should be considered separately when studying effects of environmental factors on the C cycle because EXOMET shows specific properties such as resistance to high temperature and toxic compounds.
- Published
- 2013
- Full Text
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