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Machine learning models are known to learn spurious correlations, i.e., features having strong relations with class labels but no causal relation. Relying on those correlations leads to poor performance in the data groups without these correlations and poor generalization ability. To improve the robustness of machine learning models to spurious correlations, we propose an approach to extract a subnetwork from a fully trained network that does not rely on spurious correlations. The subnetwork is found by the assumption that data points with the same spurious attribute will be close to each other in the representation space when training with ERM, then we employ supervised contrastive loss in a novel way to force models to unlearn the spurious connections. The increase in the worst-group performance of our approach contributes to strengthening the hypothesis that there exists a subnetwork in a fully trained dense network that is responsible for using only invariant features in classification tasks, therefore erasing the influence of spurious features even in the setup of multi spurious attributes and no prior knowledge of attributes labels.

Volumetric neuroimaging examinations like structural Magnetic Resonance Imaging (sMRI) are routinely applied to support the clinical diagnosis of dementia like Alzheimer's Disease (AD). Neuroradiologists examine 3D sMRI to detect and monitor abnormalities in brain morphology due to AD, like global and/or local brain atrophy and shape alteration of characteristic structures. There is a strong research interest in developing diagnostic systems based on Deep Learning (DL) models to analyse sMRI for AD. However, anatomical information extracted from an sMRI examination needs to be interpreted together with patient's age to distinguish AD patterns from the regular alteration due to a normal ageing process. In this context, part-prototype neural networks integrate the computational advantages of DL in an interpretable-by-design architecture and showed promising results in medical imaging applications. We present PIMPNet, the first interpretable multimodal model for 3D images and demographics applied to the binary classification of AD from 3D sMRI and patient's age. Despite age prototypes do not improve predictive performance compared to the single modality model, this lays the foundation for future work in the direction of the model's design and multimodal prototype training process, Comment: Accepted "late-breaking work" at XAI-2024

Knowledge editing methods (KEs) can update language models' obsolete or inaccurate knowledge learned from pre-training. However, KEs can be used for malicious applications, e.g., inserting misinformation and toxic content. Knowing whether a generated output is based on edited knowledge or first-hand knowledge from pre-training can increase users' trust in generative models and provide more transparency. Driven by this, we propose a novel task: detecting edited knowledge in language models. Given an edited model and a fact retrieved by a prompt from an edited model, the objective is to classify the knowledge as either unedited (based on the pre-training), or edited (based on subsequent editing). We instantiate the task with four KEs, two LLMs, and two datasets. Additionally, we propose using the hidden state representations and the probability distributions as features for the detection. Our results reveal that, using these features as inputs to a simple AdaBoost classifiers establishes a strong baseline. This classifier requires only a limited amount of data and maintains its performance even in cross-domain settings. Last, we find it more challenging to distinguish edited knowledge from unedited but related knowledge, highlighting the need for further research. Our work lays the groundwork for addressing malicious model editing, which is a critical challenge associated with the strong generative capabilities of LLMs.

As NLP models become more complex, understanding their decisions becomes more crucial. Counterfactuals (CFs), where minimal changes to inputs flip a model's prediction, offer a way to explain these models. While Large Language Models (LLMs) have shown remarkable performance in NLP tasks, their efficacy in generating high-quality CFs remains uncertain. This work fills this gap by investigating how well LLMs generate CFs for two NLU tasks. We conduct a comprehensive comparison of several common LLMs, and evaluate their CFs, assessing both intrinsic metrics, and the impact of these CFs on data augmentation. Moreover, we analyze differences between human and LLM-generated CFs, providing insights for future research directions. Our results show that LLMs generate fluent CFs, but struggle to keep the induced changes minimal. Generating CFs for Sentiment Analysis (SA) is less challenging than NLI where LLMs show weaknesses in generating CFs that flip the original label. This also reflects on the data augmentation performance, where we observe a large gap between augmenting with human and LLMs CFs. Furthermore, we evaluate LLMs' ability to assess CFs in a mislabelled data setting, and show that they have a strong bias towards agreeing with the provided labels. GPT4 is more robust against this bias and its scores correlate well with automatic metrics. Our findings reveal several limitations and point to potential future work directions.

Counterfactual text generation aims to minimally change a text, such that it is classified differently. Judging advancements in method development for counterfactual text generation is hindered by a non-uniform usage of data sets and metrics in related work. We propose CEval, a benchmark for comparing counterfactual text generation methods. CEval unifies counterfactual and text quality metrics, includes common counterfactual datasets with human annotations, standard baselines (MICE, GDBA, CREST) and the open-source language model LLAMA-2. Our experiments found no perfect method for generating counterfactual text. Methods that excel at counterfactual metrics often produce lower-quality text while LLMs with simple prompts generate high-quality text but struggle with counterfactual criteria. By making CEval available as an open-source Python library, we encourage the community to contribute more methods and maintain consistent evaluation in future work.

Recent advances in natural language processing (NLP) can be largely attributed to the advent of pre-trained language models such as BERT and RoBERTa. While these models demonstrate remarkable performance on general datasets, they can struggle in specialized domains such as medicine, where unique domain-specific terminologies, domain-specific abbreviations, and varying document structures are common. This paper explores strategies for adapting these models to domain-specific requirements, primarily through continuous pre-training on domain-specific data. We pre-trained several German medical language models on 2.4B tokens derived from translated public English medical data and 3B tokens of German clinical data. The resulting models were evaluated on various German downstream tasks, including named entity recognition (NER), multi-label classification, and extractive question answering. Our results suggest that models augmented by clinical and translation-based pre-training typically outperform general domain models in medical contexts. We conclude that continuous pre-training has demonstrated the ability to match or even exceed the performance of clinical models trained from scratch. Furthermore, pre-training on clinical data or leveraging translated texts have proven to be reliable methods for domain adaptation in medical NLP tasks., Comment: Accepted at LREC-COLING 2024

Recent trends in natural language processing research and annotation tasks affirm a paradigm shift from the traditional reliance on a single ground truth to a focus on individual perspectives, particularly in subjective tasks. In scenarios where annotation tasks are meant to encompass diversity, models that solely rely on the majority class labels may inadvertently disregard valuable minority perspectives. This oversight could result in the omission of crucial information and, in a broader context, risk disrupting the balance within larger ecosystems. As the landscape of annotator modeling unfolds with diverse representation techniques, it becomes imperative to investigate their effectiveness with the fine-grained features of the datasets in view. This study systematically explores various annotator modeling techniques and compares their performance across seven corpora. From our findings, we show that the commonly used user token model consistently outperforms more complex models. We introduce a composite embedding approach and show distinct differences in which model performs best as a function of the agreement with a given dataset. Our findings shed light on the relationship between corpus statistics and annotator modeling performance, which informs future work on corpus construction and perspectivist NLP., Comment: Accepted at NAACL 2024

Deep learning models have achieved high performance in medical applications, however, their adoption in clinical practice is hindered due to their black-box nature. Self-explainable models, like prototype-based models, can be especially beneficial as they are interpretable by design. However, if the learnt prototypes are of low quality then the prototype-based models are as good as black-box. Having high quality prototypes is a pre-requisite for a truly interpretable model. In this work, we propose a prototype evaluation framework for coherence (PEF-C) for quantitatively evaluating the quality of the prototypes based on domain knowledge. We show the use of PEF-C in the context of breast cancer prediction using mammography. Existing works on prototype-based models on breast cancer prediction using mammography have focused on improving the classification performance of prototype-based models compared to black-box models and have evaluated prototype quality through anecdotal evidence. We are the first to go beyond anecdotal evidence and evaluate the quality of the mammography prototypes systematically using our PEF-C. Specifically, we apply three state-of-the-art prototype-based models, ProtoPNet, BRAIxProtoPNet++ and PIP-Net on mammography images for breast cancer prediction and evaluate these models w.r.t. i) classification performance, and ii) quality of the prototypes, on three public datasets. Our results show that prototype-based models are competitive with black-box models in terms of classification performance, and achieve a higher score in detecting ROIs. However, the quality of the prototypes are not yet sufficient and can be improved in aspects of relevance, purity and learning a variety of prototypes. We call the XAI community to systematically evaluate the quality of the prototypes to check their true usability in high stake decisions and improve such models further., Comment: Accepted at World Conference on Explainable Artificial Intelligence. Cham: Springer Nature Switzerland, 2024; 21 pages, 5 figures, 3 tables

Information from neuroimaging examinations is increasingly used to support diagnoses of dementia, e.g., Alzheimer's disease. While current clinical practice is mainly based on visual inspection and feature engineering, Deep Learning approaches can be used to automate the analysis and to discover new image-biomarkers. Part-prototype neural networks (PP-NN) are an alternative to standard blackbox models, and have shown promising results in general computer vision. PP-NN's base their reasoning on prototypical image regions that are learned fully unsupervised, and combined with a simple-to-understand decision layer. We present PIPNet3D, a PP-NN for volumetric images. We apply PIPNet3D to the clinical diagnosis of Alzheimer's Disease from structural Magnetic Resonance Imaging (sMRI). We assess the quality of prototypes under a systematic evaluation framework, propose new functionally grounded metrics to evaluate brain prototypes and develop an evaluation scheme to assess their coherency with domain experts. Our results show that PIPNet3D is an interpretable, compact model for Alzheimer's diagnosis with its reasoning well aligned to medical domain knowledge. Notably, PIPNet3D achieves the same accuracy as its blackbox counterpart; and removing the remaining clinically irrelevant prototypes from its decision process does not decrease predictive performance., Comment: Accepted at iMIMIC workshop @MICCAI 2024

We present a detailed replication study of the BASS framework, an abstractive summarization system based on the notion of Unified Semantic Graphs. Our investigation includes challenges in replicating key components and an ablation study to systematically isolate error sources rooted in replicating novel components. Our findings reveal discrepancies in performance compared to the original work. We highlight the significance of paying careful attention even to reasonably omitted details for replicating advanced frameworks like BASS, and emphasize key practices for writing replicable papers., Comment: This preprint has not undergone peer review or any post-submission improvements or corrections. The Version of Record of this contribution is published in Advances in Information Retrieval, 46th European Conference on Information Retrieval, ECIR 2024. 16 pages, 4 figures

Factual knowledge encoded in Pre-trained Language Models (PLMs) enriches their representations and justifies their use as knowledge bases. Previous work has focused on probing PLMs for factual knowledge by measuring how often they can correctly predict an object entity given a subject and a relation, and improving fact retrieval by optimizing the prompts used for querying PLMs. In this work, we consider a complementary aspect, namely the coherency of factual knowledge in PLMs, i.e., how often can PLMs predict the subject entity given its initial prediction of the object entity. This goes beyond evaluating how much PLMs know, and focuses on the internal state of knowledge inside them. Our results indicate that PLMs have low coherency using manually written, optimized and paraphrased prompts, but including an evidence paragraph leads to substantial improvement. This shows that PLMs fail to model inverse relations and need further enhancements to be able to handle retrieving facts from their parameters in a coherent manner, and to be considered as knowledge bases., Comment: Accepted to EACL Findings 2024

Text simplification aims to make technical texts more accessible to laypeople but often results in deletion of information and vagueness. This work proposes InfoLossQA, a framework to characterize and recover simplification-induced information loss in form of question-and-answer (QA) pairs. Building on the theory of Question Under Discussion, the QA pairs are designed to help readers deepen their knowledge of a text. We conduct a range of experiments with this framework. First, we collect a dataset of 1,000 linguist-curated QA pairs derived from 104 LLM simplifications of scientific abstracts of medical studies. Our analyses of this data reveal that information loss occurs frequently, and that the QA pairs give a high-level overview of what information was lost. Second, we devise two methods for this task: end-to-end prompting of open-source and commercial language models, and a natural language inference pipeline. With a novel evaluation framework considering the correctness of QA pairs and their linguistic suitability, our expert evaluation reveals that models struggle to reliably identify information loss and applying similar standards as humans at what constitutes information loss., Comment: Accepted at ACL 2024 (main conference)

Pre-trained Language Models (PLMs) are trained on vast unlabeled data, rich in world knowledge. This fact has sparked the interest of the community in quantifying the amount of factual knowledge present in PLMs, as this explains their performance on downstream tasks, and potentially justifies their use as knowledge bases. In this work, we survey methods and datasets that are used to probe PLMs for factual knowledge. Our contributions are: (1) We propose a categorization scheme for factual probing methods that is based on how their inputs, outputs and the probed PLMs are adapted; (2) We provide an overview of the datasets used for factual probing; (3) We synthesize insights about knowledge retention and prompt optimization in PLMs, analyze obstacles to adopting PLMs as knowledge bases and outline directions for future work., Comment: Accepted at EMNLP Findings 2023

Automatic methods for early detection of breast cancer on mammography can significantly decrease mortality. Broad uptake of those methods in hospitals is currently hindered because the methods have too many constraints. They assume annotations available for single images or even regions-of-interest (ROIs), and a fixed number of images per patient. Both assumptions do not hold in a general hospital setting. Relaxing those assumptions results in a weakly supervised learning setting, where labels are available per case, but not for individual images or ROIs. Not all images taken for a patient contain malignant regions and the malignant ROIs cover only a tiny part of an image, whereas most image regions represent benign tissue. In this work, we investigate a two-level multi-instance learning (MIL) approach for case-level breast cancer prediction on two public datasets (1.6k and 5k cases) and an in-house dataset of 21k cases. Observing that breast cancer is usually only present in one side, while images of both breasts are taken as a precaution, we propose a domain-specific MIL pooling variant. We show that two-level MIL can be applied in realistic clinical settings where only case labels, and a variable number of images per patient are available. Data in realistic settings scales with continuous patient intake, while manual annotation efforts do not. Hence, research should focus in particular on unsupervised ROI extraction, in order to improve breast cancer prediction for all patients., Comment: 10 pages, 5 figures, 5 tables

Models trained with empirical risk minimization (ERM) are known to learn to rely on spurious features, i.e., their prediction is based on undesired auxiliary features which are strongly correlated with class labels but lack causal reasoning. This behavior particularly degrades accuracy in groups of samples of the correlated class that are missing the spurious feature or samples of the opposite class but with the spurious feature present. The recently proposed Deep Feature Reweighting (DFR) method improves accuracy of these worst groups. Based on the main argument that ERM mods can learn core features sufficiently well, DFR only needs to retrain the last layer of the classification model with a small group-balanced data set. In this work, we examine the applicability of DFR to realistic data in the medical domain. Furthermore, we investigate the reasoning behind the effectiveness of last-layer retraining and show that even though DFR has the potential to improve the accuracy of the worst group, it remains susceptible to spurious correlations., Comment: Accepted at IJCAI Workshop on XAI 2023

Automatically summarizing radiology reports into a concise impression can reduce the manual burden of clinicians and improve the consistency of reporting. Previous work aimed to enhance content selection and factuality through guided abstractive summarization. However, two key issues persist. First, current methods heavily rely on domain-specific resources to extract the guidance signal, limiting their transferability to domains and languages where those resources are unavailable. Second, while automatic metrics like ROUGE show progress, we lack a good understanding of the errors and failure modes in this task. To bridge these gaps, we first propose a domain-agnostic guidance signal in form of variable-length extractive summaries. Our empirical results on two English benchmarks demonstrate that this guidance signal improves upon unguided summarization while being competitive with domain-specific methods. Additionally, we run an expert evaluation of four systems according to a taxonomy of 11 fine-grained errors. We find that the most pressing differences between automatic summaries and those of radiologists relate to content selection including omissions (up to 52%) and additions (up to 57%). We hypothesize that latent reporting factors and corpus-level inconsistencies may limit models to reliably learn content selection from the available data, presenting promising directions for future work., Comment: Accepted at INLG2023

Part-prototype models are explainable-by-design image classifiers, and a promising alternative to black box AI. This paper explores the applicability and potential of interpretable machine learning, in particular PIP-Net, for automated diagnosis support on real-world medical imaging data. PIP-Net learns human-understandable prototypical image parts and we evaluate its accuracy and interpretability for fracture detection and skin cancer diagnosis. We find that PIP-Net's decision making process is in line with medical classification standards, while only provided with image-level class labels. Because of PIP-Net's unsupervised pretraining of prototypes, data quality problems such as undesired text in an X-ray or labelling errors can be easily identified. Additionally, we are the first to show that humans can manually correct the reasoning of PIP-Net by directly disabling undesired prototypes. We conclude that part-prototype models are promising for medical applications due to their interpretability and potential for advanced model debugging., Comment: Accepted to the International Workshop on Explainable and Interpretable Machine Learning (XI-ML), co-located with ECAI 2023

The goal of Explainable AI (XAI) is to design methods to provide insights into the reasoning process of black-box models, such as deep neural networks, in order to explain them to humans. Social science research states that such explanations should be conversational, similar to human-to-human explanations. In this work, we show how to incorporate XAI in a conversational agent, using a standard design for the agent comprising natural language understanding and generation components. We build upon an XAI question bank, which we extend by quality-controlled paraphrases, to understand the user's information needs. We further systematically survey the literature for suitable explanation methods that provide the information to answer those questions, and present a comprehensive list of suggestions. Our work is the first step towards truly natural conversations about machine learning models with an explanation agent. The comprehensive list of XAI questions and the corresponding explanation methods may support other researchers in providing the necessary information to address users' demands. To facilitate future work, we release our source code and data., Comment: Accepted at The World Conference on eXplainable Artificial Intelligence 2023 (XAI-2023)

The rising popularity of explainable artificial intelligence (XAI) to understand high-performing black boxes raised the question of how to evaluate explanations of machine learning (ML) models. While interpretability and explainability are often presented as a subjectively validated binary property, we consider it a multi-faceted concept. We identify 12 conceptual properties, such as Compactness and Correctness, that should be evaluated for comprehensively assessing the quality of an explanation. Our so-called Co-12 properties serve as categorization scheme for systematically reviewing the evaluation practices of more than 300 papers published in the last 7 years at major AI and ML conferences that introduce an XAI method. We find that 1 in 3 papers evaluate exclusively with anecdotal evidence, and 1 in 5 papers evaluate with users. This survey also contributes to the call for objective, quantifiable evaluation methods by presenting an extensive overview of quantitative XAI evaluation methods. Our systematic collection of evaluation methods provides researchers and practitioners with concrete tools to thoroughly validate, benchmark and compare new and existing XAI methods. The Co-12 categorization scheme and our identified evaluation methods open up opportunities to include quantitative metrics as optimization criteria during model training in order to optimize for accuracy and interpretability simultaneously., Comment: Published in ACM Computing Surveys (DOI http://dx.doi.org/10.1145/3583558). This ArXiv version includes the supplementary material. Website with categorization of XAI methods at https://utwente-dmb.github.io/xai-papers/

AI/Computing at scale is a difficult problem, especially in a health care setting. We outline the requirements, planning and implementation choices as well as the guiding principles that led to the implementation of our secure research computing enclave, the Essen Medical Computing Platform (EMCP), affiliated with a major German hospital. Compliance, data privacy and usability were the immutable requirements of the system. We will discuss the features of our computing enclave and we will provide our recipe for groups wishing to adopt a similar setup., Comment: 9 pages, 5 figures, to be published in the proceedings of the 2021 IEEE CogMI conference. Christin Seifert and Folker Meyer are co-senior authors

Motion behaviour is driven by several factors -- goals, presence and actions of neighbouring agents, social relations, physical and social norms, the environment with its variable characteristics, and further. Most factors are not directly observable and must be modelled from context. Trajectory prediction, is thus a hard problem, and has seen increasing attention from researchers in the recent years. Prediction of motion, in application, must be realistic, diverse and controllable. In spite of increasing focus on multimodal trajectory generation, most methods still lack means for explicitly controlling different modes of the data generation. Further, most endeavours invest heavily in designing special mechanisms to learn the interactions in latent space. We present Conditional Speed GAN (CSG), that allows controlled generation of diverse and socially acceptable trajectories, based on user controlled speed. During prediction, CSG forecasts future speed from latent space and conditions its generation based on it. CSG is comparable to state-of-the-art GAN methods in terms of the benchmark distance metrics, while being simple and useful for simulation and data augmentation for different contexts such as fast or slow paced environments. Additionally, we compare the effect of different aggregation mechanisms and show that a naive approach of concatenation works comparable to its attention and pooling alternatives.

Graph embedding has recently gained momentum in the research community, in particular after the introduction of random walk and neural network based approaches. However, most of the embedding approaches focus on representing the local neighborhood of nodes and fail to capture the global graph structure, i.e. to retain the relations to distant nodes. To counter that problem, we propose a novel extension to random walk based graph embedding, which removes a percentage of least frequent nodes from the walks at different levels. By this removal, we simulate farther distant nodes to reside in the close neighborhood of a node and hence explicitly represent their connection. Besides the common evaluation tasks for graph embeddings, such as node classification and link prediction, we evaluate and compare our approach against related methods on shortest path approximation. The results indicate, that extensions to random walk based methods (including our own) improve the predictive performance only slightly - if at all.

Computing shortest path distances between nodes lies at the heart of many graph algorithms and applications. Traditional exact methods such as breadth-first-search (BFS) do not scale up to contemporary, rapidly evolving today's massive networks. Therefore, it is required to find approximation methods to enable scalable graph processing with a significant speedup. In this paper, we utilize vector embeddings learnt by deep learning techniques to approximate the shortest paths distances in large graphs. We show that a feedforward neural network fed with embeddings can approximate distances with relatively low distortion error. The suggested method is evaluated on the Facebook, BlogCatalog, Youtube and Flickr social networks.

Today, many companies take advantage of viral marketing to promote their new products, and since there are several competing companies in many markets, Competitive Influence Maximization has attracted much attention. Two categories of studies exist in the literature. First, studies that focus on which nodes from the network to select considering the existence of the opponents. Second, studies that focus on the problem of budget allocation. In this work, we integrate these two lines of research and propose a new scenario where competition happens in two phases. First, parties identify the most influential nodes of the network. Then they compete over only these influential nodes by the amount of budget they allocate to each node. We provide a strong motivation for this integration. Also, in previous budget allocation studies, any fraction of the budget could be allocated to a node, which means that the action space was continuous. However, in our scenario, we consider that the action space is discrete. This consideration is far more realistic, and it significantly changes the problem. We model the scenario as a game and propose a novel framework for calculating the Nash equilibrium. Notably, building an efficient framework for this problem with such a huge action space and also handling the stochastic environment of influence maximization is very challenging. To tackle these difficulties, we devise a new payoff estimation method and a novel best response oracle to boost the efficiency of our framework. Also, we validate each aspect of our work through extensive experiments., Comment: 16 pages, 2 figure

We consider the initial situation where a dataset has been over-partitioned into $k$ clusters and seek a domain independent way to merge those initial clusters. We identify the total variation distance (TVD) as suitable for this goal. By exploiting the relation of the TVD to the Bayes accuracy we show how neural networks can be used to estimate TVDs between all pairs of clusters in parallel. Crucially, the needed memory space is decreased by reducing the required number of output neurons from $k^2$ to $k$. On realistically obtained over-clusterings of ImageNet subsets it is demonstrated that our TVD estimates lead to better merge decisions than those obtained by relying on state-of-the-art unsupervised representations. Further the generality of the approach is verified by evaluating it on a a point cloud dataset.

Sequential decision making is a typical problem in reinforcement learning with plenty of algorithms to solve it. However, only a few of them can work effectively with a very small number of observations. In this report, we introduce the progress to learn the policy for Malaria Control as a Reinforcement Learning problem in the KDD Cup Challenge 2019 and propose diverse solutions to deal with the limited observations problem. We apply the Genetic Algorithm, Bayesian Optimization, Q-learning with sequence breaking to find the optimal policy for five years in a row with only 20 episodes/100 evaluations. We evaluate those algorithms and compare their performance with Random Search as a baseline. Among these algorithms, Q-Learning with sequence breaking has been submitted to the challenge and got ranked 7th in KDD Cup.