195 results on '"SIMBU virus"'
Search Results
2. Neutralizing antibodies against Simbu serogroup viruses in cattle and sheep, Nigeria, 2012–2014
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Daniel Oluwayelu, Kerstin Wernike, Adebowale Adebiyi, Simeon Cadmus, and Martin Beer
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Schmallenberg virus ,Simbu virus ,Shamonda virus ,Cattle ,Sheep ,ELISA ,Veterinary medicine ,SF600-1100 - Abstract
Abstract Background Simbu serogroup viruses of the Orthobunyavirus genus (Family Peribunyaviridae) include teratogenic pathogens that cause severe economic losses, abortions, stillbirths and congenital abnormalities in ruminants worldwide. Although they were initially isolated from ruminants and Culicoides biting midges about five decades ago in Nigeria, there is no current information on their prevalence and geographical distribution despite reports of abortions and congenital malformations in the country’s ruminant population. Here, apparently healthy cattle and sheep obtained from eight states in the three major vegetation zones of Nigeria were screened for the presence of specific neutralizing antibodies against Schmallenberg virus (SBV), Simbu virus (SIMV) and Shamonda virus (SHAV). Results Using a cross-sectional design, 490 cattle and 165 sheep sera were collected between 2012 and 2014 and tested by a commercial SBV ELISA kit which enables the detection of antibodies against various Simbu serogroup viruses. The seropositivity rates for cattle and sheep were 91.2% and 65.4%, respectively. In cattle, there was no association between ELISA seropositivity and vegetation zone. However, the prevalence of anti-Simbu serogroup antibodies was significantly higher in Ebonyi State compared to other states in the rainforest vegetation zone. The seroprevalence was significantly higher in sheep obtained from live animal markets compared to farms (OR = 5.8). Testing of 20 selected ELISA-positive sera by serum neutralisation test showed that all were positive for one or more of SBV, SIMV and SHAV with the highest titres obtained for SHAV. Antibodies to SBV or a closely related virus were detected in the Sudan savannah and rainforest zones, anti-SIMV antibodies were detected only in the rainforest zone, while anti-SHAV antibodies were found in the three vegetation zones. Conclusion The findings of this study reveal that following the early isolation of Simbu serogroup viruses in Nigeria in the 1960s, members of this virus group are still circulating in the country. Specifically, SBV, SIMV and SHAV or closely related viruses infect cattle and sheep across the three vegetation zones of Nigeria suggesting that insect vector activity is extensive in the country. The exact vegetation zone where the animals became exposed to the viruses could, however, not be determined in this study.
- Published
- 2018
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3. Revisiting the Importance of Orthobunyaviruses for Animal Health: A Scoping Review of Livestock Disease, Diagnostic Tests, and Surveillance Strategies for the Simbu Serogroup.
- Author
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O'Connor TW, Hick PM, Finlaison DS, Kirkland PD, and Toribio JLML
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- Cattle, Animals, Livestock, Seroepidemiologic Studies, Serogroup, Diagnostic Tests, Routine, Orthobunyavirus, Simbu virus, Bunyaviridae Infections diagnosis, Bunyaviridae Infections epidemiology, Bunyaviridae Infections veterinary, Cattle Diseases diagnosis, Cattle Diseases epidemiology
- Abstract
Orthobunyaviruses (order Bunyavirales , family Peribunyaviridae ) in the Simbu serogroup have been responsible for widespread epidemics of congenital disease in ruminants. Australia has a national program to monitor arboviruses of veterinary importance. While monitoring for Akabane virus, a novel orthobunyavirus was detected. To inform the priority that should be given to this detection, a scoping review was undertaken to (1) characterise the associated disease presentations and establish which of the Simbu group viruses are of veterinary importance; (2) examine the diagnostic assays that have undergone development and validation for this group of viruses; and (3) describe the methods used to monitor the distribution of these viruses. Two search strategies identified 224 peer-reviewed publications for 33 viruses in the serogroup. Viruses in this group may cause severe animal health impacts, but only those phylogenetically arranged in clade B are associated with animal disease. Six viruses (Akabane, Schmallenberg, Aino, Shuni, Peaton, and Shamonda) were associated with congenital malformations, neurological signs, and reproductive disease. Diagnostic test interpretation is complicated by cross-reactivity, the timing of foetal immunocompetence, and sample type. Serological testing in surveys remains a mainstay of the methods used to monitor the distribution of SGVs. Given significant differences in survey designs, only broad mean seroprevalence estimates could be provided. Further research is required to determine the disease risk posed by novel orthobunyaviruses and how they could challenge current diagnostic and surveillance capabilities.
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- 2024
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4. Development and validation of a universal S-segment-based real-time RT-PCR assay for the detection of Simbu serogroup viruses.
- Author
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Golender, N., Bumbarov, V.Y., Erster, O., Beer, M., Khinich, Y., and Wernike, K.
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VIRAL disease diagnosis , *SIMBU virus , *REVERSE transcriptase polymerase chain reaction , *LIVESTOCK diseases , *BLOOD testing - Abstract
Highlights • A probe-based real-time RT-PCR for the complete Simbu serogroup was established. • Species identification of detected viruses by subsequent sequence analysis is enabled. • A comprehensive panel of Simbu viruses could be reliably detected. • Co-circulation of AKAV and SHUV in Israel was confirmed using the new system. Abstract Simbu serogroup viruses induce acute clinical diseases and abnormal courses of pregnancies in livestock. In Israel, two members of this serogroup, namely Akabane virus (AKAV) and Shuni virus (SHUV), were recently detected and, in Europe, Schmallenberg virus (SBV) poses a threat to ruminants. To address this emerging problem, a universal S-segment-based real-time RT-PCR assay (Uni-S) for the detection of Simbu serogroup viruses was established, which, additionally, enabled species identification of the detected viruses by subsequent sequencing. The newly developed probe-based PCR system enabled reliable detection of a comprehensive panel of Simbu viruses. Furthermore, several SBV isolates and German field samples were tested by the new Uni-S system in comparison to a SBV-specific real-time RT-PCR and both assays exhibited equally high levels of sensitivities. Finally, co-circulation of AKAV and SHUV in Israel was confirmed by analyzing field samples using the Uni-S assay followed by sequence analysis of the positive samples. To validate the test specificity, blood and tissue samples from animals negative for Simbu viruses, preparations of genetically related viruses and additional ruminant pathogens were examined and all were found to be negative. In conclusion, the new assay enabled sensitive and rapid universal molecular detection of Simbu viruses and is expected to serve as a valuable method for infection diagnosis, especially in regions where several Simbu serogroup members circulate. [ABSTRACT FROM AUTHOR]
- Published
- 2018
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5. Characterization of Simbu serogroup virus infections in type I interferon receptor knock-out mice.
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Tauscher, Kerstin, Wernike, Kerstin, Fischer, Melina, Wegelt, Anne, Hoffmann, Bernd, Teifke, Jens, and Beer, Martin
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SIMBU virus , *INTERFERON receptors , *RUMINANTS , *WEIGHT loss , *PARALYSIS , *VIRAL genomes , *ENCEPHALOMYELITIS , *GLIOSIS - Abstract
In late 2011, Schmallenberg virus (SBV), a novel, arthropod-borne, teratogenic orthobunyavirus, emerged near the German/Dutch border and thereafter spread rapidly throughout the continent thereby causing great economic losses in European livestock. SBV mainly infects ruminants and closely related viruses such as Sabo virus (SABOV), Simbu virus (SIMBUV) and Sathuperi virus (SATV) have been isolated from their insect-vectors or putative ruminant hosts. However, information about their pathogenesis and in vivo studies with SABOV, SIMBUV, and SATV are scarce. As experimental infections of ruminants are comprehensive and time-consuming, an SBV small animal model was assessed regarding its suitability for studying Simbu viruses. Adult type I interferon deficient mice (IFNAR-/-) were subcutaneously infected with the Simbu serogroup members SABOV, SIMV and SATV, respectively, and compared to SBV-infected mice. All animals were clinically, virologically, serologically, and pathologically examined. The clinical signs were mainly characterised by the loss of body weight and by paralysis. In blood, and samples from the spleen and brain, high loads of viral genome were detected using newly developed real-time PCR assays. The most common histologic lesions included meningo-encephalomyelitis, perivascular cuffing of lymphocytes and macrophages, neuronal degeneration and gliosis. These lesions have also been described in foetuses after transplacental infection with SBV. In-situ hybridisation signals were widely distributed in multiple neurons of the brain and spinal cord in all examined, inoculated mice. In conclusion, IFNAR-/- mice are a suitable animal model for pathogenesis studies of a broad range of Simbu serogroup viruses since all the viruses examined displayed a common pattern of viral organ and tissue distribution in this mouse model. [ABSTRACT FROM AUTHOR]
- Published
- 2017
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6. Schmallenberg Virus Infection Diagnosis: Results of a German Proficiency Trial.
- Author
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Wernike, K., Beer, M., and Hoffmann, B.
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SCHMALLENBERG virus , *ROUTINE diagnostic tests , *GENOMES , *NUCLEIC acids , *SIMBU virus , *SEROLOGY - Abstract
Since Schmallenberg virus ( SBV), an orthobunyavirus of the Simbu serogroup, was detected in Central Europe in 2011 for the first time, numerous diagnostic test systems for genome or antibody detection have been established. Therefore, a laboratory proficiency trial with 28 veterinary laboratories was initiated to allow performance evaluations of the different veterinary diagnostic laboratories and the performance of the used assays. A panel of selected sera and bovine semen samples for the analysis by real-time PCR and an additional set of serum samples for serological analysis were provided. All participants were asked to investigate the samples with the test systems routinely used in their laboratory. While SBV-genome was reliably detected in serum samples, the sensitivity in semen samples seems to depend on the application of the recommended optimized nucleic acid extraction method ( TRIzol® LS Reagent-based, Hoffmann et al., 2013, Vet. Microbiol., 167, 289). SBV-antibody-positive samples and sera negative for antibodies against Simbu serogroup viruses were in most cases correctly classified by the participants with the used commercial ELISA kits. However, a serum of the panel which contained antibodies against Akabane and Aino viruses, which are closely related to SBV, was repeatedly tested positive by two of four used ELISA kits. However, an excellent diagnostic sensitivity and specificity was achieved using a serum neutralization test. In conclusion, the here described German SBV proficiency test demonstrated that the available test systems allowed reliable SBV diagnostics in standard veterinary laboratories when recommended and approved assays are used. [ABSTRACT FROM AUTHOR]
- Published
- 2017
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7. Seroprevalence of Schmallenberg virus and other Simbu group viruses among the Lebanese sheep.
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Abi-Rizk, Alain, Kanaan, Tony, and El Hage, Jeanne
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SHEEP diseases , *SCHMALLENBERG virus , *SEROPREVALENCE , *SIMBU virus , *ENZYME-linked immunosorbent assay - Abstract
In order to evaluate for the first time, the serological prevalence of Schmallenberg virus (SBV) and other Simbu group viruses in Lebanon, sheep originating from 15 Lebanese regions were sampled in September 2016. A total number of 750 serum samples from Awassi sheep were tested by ELISA for viral nucleoprotein antibodies. From the sampled animals, 122 animals were seropositive to SBV/Simbu group viruses. The seropositive sheep were mainly located in South Lebanon. At herd-level, a seroprevalence of 53.33% was recorded in the Seven Lebanese governorates. The animal-level seroprevalence was 16.26% and both animal and herd-level seroprevalences were negative in Mount-Lebanon. Despite that there was some serological evidence showed the presence of some Simbu group viruses in the Middle East, no study was done in Lebanon. In this study, we report for the first time the prevalence of SBV and other Simbu group viruses in Lebanon. [ABSTRACT FROM AUTHOR]
- Published
- 2017
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8. Circulation of a Simbu Serogroup Virus, Causing Schmallenberg Virus-Like Clinical Signs in Northern Jordan.
- Author
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Abutarbush, S. M., La Rocca, A., Wernike, K., Beer, M., AL Zuraikat, K., Al Sheyab, O. M., Talafha, A. Q., and Steinbach, F.
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SIMBU virus , *SCHMALLENBERG virus , *NEUTRALIZATION (Chemistry) - Abstract
Schmallenberg virus (SBV)-like clinical cases of abortions in northern Jordan in early 2013, together with the emergence of SBV in Europe in 2011, its rapid spread within the following years and the detection of this virus in Turkey, raised questions about the distribution of SBV or related orthobunyaviruses. To evaluate the occurrence of SBV or related members of the Simbu serogroup of orthobunyaviruses in Jordan, bulk milk (cattle) and serum samples (cattle, sheep and goat) collected in northern Jordan in 2013 were first tested by commercially available SBV antibody ELISAs. Indeed, 3 of 47 bulk milk samples and 57 of 115 serum samples provided positive results, but SBV specificity of the ELISA results could not be confirmed by virus neutralization assays. Instead, subsequent cross-neutralization tests were able to further investigate the specificity of these antibodies. Here, a significant inhibition of Aino virus was observed. Thus, the causative agent was most likely a Simbu serogroup virus closely related to Aino virus. Consequently, these results confirm that members of this group of virus are not only present in Europe, Africa or Australia, but also in the Middle East. [ABSTRACT FROM AUTHOR]
- Published
- 2017
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9. Congenital Malformations of Calves Infected with Shamonda Virus, Southern Japan.
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Yoshimasa Hirashima, Shoei Kitahara, Tomoko Kato, Hiroaki Shirafuji, Shogo Tanaka, Tohru Yanase, Hirashima, Yoshimasa, Kitahara, Shoei, Kato, Tomoko, Shirafuji, Hiroaki, Tanaka, Shogo, and Yanase, Tohru
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CALVES , *CATTLE diseases , *SIMBU virus , *INFECTION , *RUMINANTS , *ARTHROGRYPOSIS , *CENTRAL nervous system - Abstract
In 2015 and 2016, we observed 15 malformed calves that were exposed to intrauterine infection with Shamonda virus, a Simbu serogroup orthobunyavirus, in Japan. Characteristic manifestations were arthrogryposis and gross lesions in the central nervous system. Our results indicate that this arbovirus should be considered a teratogenic virus in ruminants. [ABSTRACT FROM AUTHOR]
- Published
- 2017
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10. Effective interference between Simbu serogroup orthobunyaviruses in mammalian cells.
- Author
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Wernike, Kerstin, Brocchi, Emiliana, and Beer, Martin
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SIMBU virus , *SUPERINFECTION , *MIXED infections , *IMMUNOFLUORESCENCE , *SCHMALLENBERG virus - Abstract
The Simbu serogroup of orthobunyaviruses comprises a wide range of viruses with different medical and veterinary relevance. These viruses are known to reassort, and coinfection of the same cell is one of the prerequisites for reassortment. Here, a mammalian cell line was infected with various members of this virus group, inoculated after several time points with a second Simbu serogroup virus, and analyzed by strain or species specific immunofluorescence staining. Different virus species or different strains of the same virus species were able to co-infect mammalian cells, but only for a limited time frame. After a few hours, the replication of the first virus led to a gradual inhibition of a second virus until a complete resistance to superinfection after 24 h regardless whether it is another strain of the same virus species or a distinct member of the serogroup. [ABSTRACT FROM AUTHOR]
- Published
- 2016
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11. Simbu Viruses’ Infection of Livestock in Israel—A Transient Climatic Land
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Adi Behar and Jacob Brenner
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Serotype ,Orthobunyavirus ,Livestock ,Climate ,Cattle Diseases ,Sheep Diseases ,Zoology ,Review ,Subtropics ,Arbovirus Infections ,Bunyaviridae Infections ,Serogroup ,Communicable Diseases, Emerging ,Mediterranean Basin ,Microbiology ,Disease Outbreaks ,Simbu serogroup ,Virology ,Animals ,emerging disease ,Israel ,Sheep ,biology ,business.industry ,Akabane virus ,Simbu viruses ,Mediterranean basin ,Culicoides ,Simbu virus ,Ruminants ,biology.organism_classification ,QR1-502 ,Infectious Diseases ,Geography ,Cattle ,business ,geographic locations - Abstract
Important lessons have been learned by the Israeli veterinary community regarding Simbu serogroup viruses infections. This serogroup of viruses might cause the births of neonatal malformation in susceptible ruminant’s populations. Until 2012, only Akabane virus was connected with the births of malformed ruminants in Israel. However, serological and genomic detection tests, coupled with viral isolations, revealed that more than a single Simbu serogroup serotype could be present concurrently in the same farm or even in the same animal. From 2012 to date, Aino, Shuni, Shamunda, Satuperi, Peaton, Schmallenberg, and Sango viruses have been found in Israel either by serological or genomic investigation. Israel is located in the Eastern Mediterranean Basin, a terrestrial and climatic bridge between the three old continents. The Eastern Mediterranean shores benefit from both the tropical/subtropical and the continental climatic conditions. Therefore, the Eastern Mediterranean basin might serve as an optimal investigatory compound for several arboviral diseases, acting as a sentinel. This review summarizes updated information related to the presence of Simbu serogroup viruses in Israel.
- Published
- 2021
12. Seasonal and spatial variation in Culicoides community structure and their potential role in transmitting Simbu serogroup viruses in Israel
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Yaniv Lavon, Asael Rot, Adi Behar, Jacob Brenner, Nadav Gur, and Omer Izhaki
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Ceratopogonidae ,040301 veterinary sciences ,viruses ,African Horse Sickness Virus ,Cattle Diseases ,Sheep Diseases ,Zoology ,Bunyaviridae Infections ,Arbovirus ,Virus ,0403 veterinary science ,03 medical and health sciences ,medicine ,Animals ,Horses ,Israel ,030304 developmental biology ,Spatial Analysis ,0303 health sciences ,Sheep ,General Veterinary ,General Immunology and Microbiology ,biology ,business.industry ,Community structure ,Simbu virus ,Outbreak ,Biodiversity ,04 agricultural and veterinary sciences ,General Medicine ,medicine.disease ,Culicoides ,biology.organism_classification ,Cattle ,Horse Diseases ,Livestock ,Seasons ,business ,Animal Distribution - Abstract
Culicoides biting midges (Diptera: Ceratopogonidae) are a successful group of small (1-3 mm) haematophagous flies, some species of which are biological vectors of veterinary arboviruses, such as bluetongue virus, epizootic haemorrhagic disease virus, African horse sickness virus and Simbu serogroup viruses. In this study, we examine seasonal and spatial effects on the presence and distribution of Culicoides communities associated with ruminant and equine farms in Israel, and their infection with Simbu serogroup viruses. Our results demonstrate that both the vectors and the viruses are widely spread in Israel, including regions that were previously considered Culicoides-free. Moreover, our results show that although seasonality affects infection with Simbu serogroup viruses, both viruses and potential vectors can be found year round, suggesting continuous circulation of Simbu serogroup viruses in Israeli livestock farms. Finally, this study provides novel and basic information on Simbu serogroup-infected Culicoides in Israel: it demonstrates that Sathuperi, Shuni and Peaton viruses were circulating in Israel in 2015-2017 as they were found in C. imicola and C. oxystoma, both potential vectors of these viruses, and supplies the first-ever genomic detection of Sathuperi in Israel. Consequently, the data emerging from this study are of importance in understanding the epidemiology of arboviruses in Israel and are of relevance to the potential spread and possible future outbreaks of different Simbu serogroup viruses within the Mediterranean region and Europe.
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- 2020
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13. STUDIES CONCERNING THE OPTIMISATION OF REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION TECHNIQUE OF PAN-SIMBU VIRUS GROUP.
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GURAU, Maria Rodica, BARAITAREANU, Stelian, MANESCU, Marius Andrei, POPP, Mihaela Cristiana, and DANES, Doina
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REVERSE transcriptase polymerase chain reaction ,SIMBU virus ,SCHMALLENBERG virus ,SEROLOGY ,FLUORIMETRY - Abstract
Several molecular methods have been developed for diagnostic or surveillance of those agents of emerging infectious diseases, including for the Schmallenberg-Simbu group viruses. Serological surveillance of the Schmallenberg-Simbu group viruses in Romania revealed the presence of positive ruminants and it rise up the question about the presence of virus into the environment. In this frame, the paper has described preliminary studies concerning the optimisation of classical RT-PCR of pan-Simbu virus group. We used the OneStep RT-PCR Kit and made minor changes as follows. For one reaction were used 5 μl 5x OneStep RT-PCR Buffer, 1.5 μl dNTP 10 mM, 1.5 μl OneStep RT-PCR Enzyme Mix, 4 μl primer panOBV-L-2959 F 10 μM, 4 μl primer panOBV-L-3274R 10 μM and 9 μl RNase-free water. Into reaction tubes were transferred 25 μL master mix + 10 μL sample. Thermal cycling program consisted of one cycle of 50°C - 30 min and one cycle of 95°C - 15 min, followed by 42 cycles of 95°C - 30 s, 55°C - 30 s, 72°C - 30 s and 72°C - 10 min. All results obtained by real time RT-PCR (virotype SBV RT-PCR Kit) and classical RT-PCR were correlated with the quantity of estimated RNA by fluorometry. The sensitivity of classical RT-PCR was lower than sensitivity of real time RT-PCR, the positive result being acquired at a minimum of 3.91 ng/μl RNA per sample. The specificity of methods was the same, without non-specific electrophoretic bands detection. Therefore, our classical RT-PCR protocol can be a useful tool in evaluation of virus circulation in countries with or without history of associated Simbu disease in livestock, or with reported seroconversion. [ABSTRACT FROM AUTHOR]
- Published
- 2016
14. Broad-range detection of arboviruses belonging to Simbu serogroup lineage 1 and specific detection of Akabane, Aino and Peaton viruses by newly developed multiple TaqMan assays.
- Author
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Shirafuji, Hiroaki, Yazaki, Ryu, Shuto, Yozo, Yanase, Tohru, Kato, Tomoko, Ishikura, Youji, Sakaguchi, Zenjiro, Suzuki, Moemi, and Yamakawa, Makoto
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ARBOVIRUSES , *SIMBU virus , *AKABANE virus , *BIOLOGICAL assay , *VIRUS research - Abstract
TaqMan assays were developed for the broad-range detection of arboviruses belonging to Simbu serogroup lineage 1 in the genus Orthobunyavirus and also for the specific detection of three viruses in the lineage, Akabane, Aino and Peaton viruses (AKAV, AINOV and PEAV, respectively). A primer and probe set was designed for the broad-range detection of Simbu serogroup lineage 1 (Pan-Simbu1 set) mainly targeting AKAV, AINOV, PEAV, Sathuperi and Shamonda viruses (SATV and SHAV), and the forward and reverse primers of the Pan-Simbu1 set were also used for the specific detection of AKAV with another probe (AKAV-specific set). In addition, two more primer and probe sets were designed for AINOV- and PEAV-specific detection, respectively (AINOV- and PEAV-specific sets). All of the four primer and probe sets successfully detected targeted viruses, and thus broad-range and specific detection of all the targeted viruses can be achieved by using two multiplex assays and a single assay in a dual (two-color) assay format when another primer and probe set for a bovine β-actin control is also used. The assays had an analytical sensitivity of 10 copies/tube for AKAV, at least 100 copies/tube for AINOV, 100 copies/tube for PEAV, one copy/tube for SATV and at least 10 copies/tube for SHAV, respectively. Diagnostic sensitivity of the assays was tested with field-collected bovine samples, and the results suggested that the sensitivity was higher than that of a conventional RT-PCR. These data indicate that the newly developed TaqMan assays will be useful tools for the diagnosis and screening of field-collected samples for infections of AKAV and several other arboviruses belonging to the Simbu serogroup lineage 1. [ABSTRACT FROM AUTHOR]
- Published
- 2015
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15. Detection and differentiation of Schmallenberg, Akabane and Aino viruses by one-step multiplex reverse-transcriptase quantitative PCR assay.
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Ji-Hye Lee, Hyun-Ji Seo, Jee-Yong Park, Sung-Hee Kim, Yun Sang Cho, Yong-Joo Kim, In-Soo Cho, and Hye-Young Jeoung
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AKABANE disease ,REVERSE transcriptase ,SIMBU virus ,POLYMERASE chain reaction ,BUNYAVIRUSES ,SYMPTOMS - Abstract
Background: Schmallenberg virus (SBV), Akabane virus (AKAV) and Aino virus (AINV) are members of the Simbu serogroup within the genus Orthobunyavirus, family Bunyaviridae, which can cause reproductive disorders including abortion, stillbirth and congenital malformation in ruminants. Because, the clinical signs are similar, confirmatory diagnosis requires viral detection to differentiate infection between these three viruses. Methods: In this study, a one-step multiplex reverse-transcriptase quantitative PCR (one-step mRT-qPCR) was developed for the simultaneous detection and differentiation of SBV, AKAV and AINV. Results: The detection limit of the one-step mRT-qPCR for SBV, AKAV and AINV were 2.4 copies (10
0.6 TCID50 /ml), 96.2 copies (101.5 TCID 50/ml) and 52.3 copies (101.2 TCID50 /ml), respectively. Various field samples such as bovine serum, bovine whole blood, bovine brain, goat serum and Culicoides were analyzed using the one-step mRT-qPCR and compared with previously published RT-qPCRs. The test results of the field samples were identical for the one-step mRT-qPCR and RT-qPCRs, which showed all samples to be negative for SBV, AKAV and AINV, except for one bovine brain sample (1/123) that was positive for AKAV. Conclusion: The one-step mRT-qPCR allows for the simultaneous detection of three viral pathogens (SBV, AKAV and AINV) that cause reproductive failure. [ABSTRACT FROM AUTHOR]- Published
- 2015
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16. Detection of serum neutralizing antibodies to Simbu sero-group viruses in cattle in Tanzania.
- Author
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Mathew, Coletha, Klevar, S., Elbers, A. R. W., van der Poel, W. H. M., Kirkland, P. D., Godfroid, J., Mdegela, R. H., Mwamengele, G., and Stokstad, M.
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SIMBU virus , *BLOOD serum analysis , *IMMUNOGLOBULINS , *SEROLOGY , *CROSS-sectional method - Abstract
Background: Orthobunyaviruses belonging to the Simbu sero-group occur worldwide, including the newly recognized Schmallenberg virus (SBV) in Europe. These viruses cause congenital malformations and reproductive losses in ruminants. Information on the presence of these viruses in Africa is scarce and the origin of SBV is unknown. The aim of this study was to investigate the presence of antibodies against SBV and closely related viruses in cattle in Tanzania, and their possible association with reproductive disorders. Results: In a cross-sectional study, serum from 659 cattle from 202 herds collected in 2012/2013 were analyzed using a commercial kit for SBV ELISA, and 61 % were positive. Univariable logistic regression revealed significant association between ELISA seropositivity and reproductive disorders (OR = 1.9). Sera from the same area collected in 2008/2009, before the SBV epidemic in Europe, were also tested and 71 (54.6 %) of 130 were positive. To interpret the ELISA results, SBV virus neutralization test (VNT) was performed on 110 sera collected in 2012/2013, of which 51 % were positive. Of 71 sera from 2008/2009, 21 % were positive. To investigate potential cross reactivity with related viruses, 45 sera from 2012/2013 that were positive in SBV ELISA were analyzed in VNTs for Aino, Akabane, Douglas, Peaton, Sabo, SBV, Sathuperi, Shamonda, Simbu and Tinaroo viruses. All 45 sera were positive for one or more of these viruses. Twenty-nine sera (64.4 %) were positive for SBV, and one had the highest titer for this virus. Conclusions: This is the first indication that Aino, Akabane, Douglas, Peaton, Sabo, SBV, Sathuperi, Shamonda and Tinaroo viruses circulate and cause negative effect on reproductive performance in cattle in Tanzania. SBV or a closely related virus was present before the European epidemic. However, potential cross reactivity complicates the interpretation of serological studies in areas where several related viruses may circulate. Virus isolation and molecular characterization in cattle and/or vectors is recommended to further identify the viruses circulating in this region. However, isolation in cattle is difficult due to short viremic period of 2 to 6 days, and isolation in vectors does not necessarily reflect the situation in cattle. [ABSTRACT FROM AUTHOR]
- Published
- 2015
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17. Malformations Caused by Shuni Virus in Ruminants, Israel, 2014–2015
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Natalia Golender, Jacob Brenner, Motti Valdman, Yevgeny Khinich, Velizar Bumbarov, Alexander Panshin, Nir Edery, Shimon Pismanik, and Adi Behar
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Shuni virus ,Simbu virus ,orthobunyaviruses ,viruses ,Israel ,malformation ,Medicine ,Infectious and parasitic diseases ,RC109-216 - Published
- 2015
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18. Investigations on California Serogroup Orthobunyaviruses in the Tyrols: First Description of Tahyna Virus in The Alps.
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Sonnleitner, Sissy Therese, Lundström, Jan, Baumgartner, Raphaela, Simeoni, Josef, Schennach, Harald, Zelger, Roland, Prader, Angelika, Schmutzhard, Erich, Nowotnym, Norbert, and Walder, Gernot
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SIMBU virus , *TAHYNA virus , *IMMUNOFLUORESCENCE , *VIRUS diseases , *IMMUNOGLOBULIN G , *MOSQUITO vectors - Abstract
Seroprevalence rates for immunoglobulin G (IgG) antibodies to Tahyna virus (TAHV) and Inkoo virus (INKV) were determined in sera of 1630 blood donors from North, East, and South Tyrol by immunofluorescence assays (IFAs) and confirmatory serum neutralization tests (SNTs). Ten sera (0.6%) reacted positive by TAHV IFA, five of which (0.3%) were confirmed by SNT. Eleven sera (0.7%) reacted positive in the INKV IFA; only one thereof (0.06%) was verified by subsequent SNT. To identify the source of infections, mosquitoes were trapped at 18 sampling sites in the study area, resulting in the collection of 2571 adult mosquitoes: 1254 individuals of the genus Aedes (48.8% of total) including A. albopictus, 640 Culex (24.9%), 303 Coquillettidia (11.8%), 252 Ochlerotatus (9.8%), 49 Anopheles (1.9%), and 73 mosquitoes of the genus Culiseta (2.8%). The mosquitoes were pooled according to species, trapping site, and time, and were tested by RT-PCR for the presence of California serogroup orthobunyavirus nucleic acids. PCR amplification products were obtained in five of 195 pools (2.6%), and all were identified as TAHVs by subsequent sequencing. This represents the first evidence of TAHV circulation and human exposure in the Tyrols and in the alpine region in general. Interestingly, all TAHV sequences were identified in Culex pipiens/torrentium mosquitoes. Whether other California serogroup orthobunyaviruses such as INKV are also circulating in this area is subject of further investigations on larger numbers of mosquitoes. [ABSTRACT FROM AUTHOR]
- Published
- 2014
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19. First genomic detection of Peaton virus in a calf with hydranencephaly in Israel
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Binyamin Boris Leibovich, Jacob Brenner, Tohru Yanase, Adi Behar, and Nir Edery
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Male ,0301 basic medicine ,Culicoides imicola ,040301 veterinary sciences ,Case Report ,Weak calf syndrome ,Case Reports ,Genome, Viral ,Bunyaviridae Infections ,Hydranencephaly ,Arbovirus ,Peaton virus ,0403 veterinary science ,03 medical and health sciences ,Simbu serogroup ,medicine ,Animals ,lcsh:Veterinary medicine ,General Veterinary ,biology ,Phylogenetic tree ,Blindness ,Brain ,Simbu virus ,04 agricultural and veterinary sciences ,Culicoides ,biology.organism_classification ,medicine.disease ,Virology ,arbovirus ,030104 developmental biology ,Simbu serogroup viruses ,lcsh:SF600-1100 ,Cattle ,congenital malformations - Abstract
Simbu serogroup are arbo‐ viruses which are mainly transmitted by Culicoides. Two members of the Simbu serogroup, Akabane and Shuni viruses, have been isolated from congenitally malformed ruminants in Israel. A recent serosurvey revealed that Israeli ruminants have been exposed to several additional Simbu viruses, including Shamonda and Sathuperi that seems to be circulating in Israel. In April 2017, an apparently healthy one‐month‐old male calf was transferred to the Kimron Veterinary Institute. A few days later, the calf was reported to be slow to respond to its surroundings and was not able to feed on its own. Blindness was observed upon clinical examination. RNA of the small, medium and large segments of Simbu serogroup viruses were amplified and sequenced from the testis tissues and from the Cerebrospinal fluid (CSF). During post‐mortem examination, hydranencephaly was defined. Phylogenetic analysis of all three segments of Simbu serogroup viruses showed that the sequences detected in the Israeli calf were virtually identical to Peaton virus (PEAV). PEAV was also detected in two pools of Culicoides imicola trapped at two different locations in Israel. This is the first genomic detection of PEAV outside Australia and Japan. These results are of epidemiological significance, as they demonstrate that PEAV is circulating in Israel and affects cattle. Consequently, these results are also of relevance to a potential spread of Simbu serogroup viruses into Europe.
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- 2019
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20. No evidence for the persistence of Schmallenberg virus in overwintering mosquitoes.
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SCHOLTE, E. J., MARS, M. H., BRAKS, M., DEN HARTOG, W., IBAÑEZ‐JUSTICIA, A., KOOPMANS, M., KOENRAADT, C. J. M., DE VRIES, A., and REUSKEN, C.
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ANIMAL wintering , *SIMBU virus , *BUNYAVIRUSES , *RUMINANTS , *DISEASE vectors , *VIRUS disease transmission , *DIPTERA - Abstract
In 2011, Schmallenberg virus ( SBV), a novel member of the Simbu serogroup, genus Orthobunyavirus, was identified as the causative agent of a disease in ruminants in Europe. Based on the current knowledge on arthropods involved in the transmission of Simbu group viruses, a role of both midges and mosquitoes in the SBV transmission cycle cannot be excluded beforehand. The persistence of SBV in mosquitoes overwintering at SBV-affected farms in the Netherlands was investigated. No evidence for the presence of SBV in 868 hibernating mosquitoes ( Culex, Anopheles, and Culiseta spp., collected from January to March 2012) was found. This suggests that mosquitoes do not play an important role, if any, in the persistence of SBV during the winter months in northwestern Europe. [ABSTRACT FROM AUTHOR]
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- 2014
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21. Development of a pan-Simbu real-time reverse transcriptase PCR for the detection of Simbu serogroup viruses and comparison with SBV diagnostic PCR systems.
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Fischer, Melina, Schirrmeier, Horst, Wernike, Kerstin, Wegelt, Anne, Beer, Martin, and Hoffmann, Bernd
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SIMBU virus , *VIRUS diseases , *REVERSE transcriptase polymerase chain reaction , *CATTLE , *SHEEP , *GOATS - Abstract
Background Schmallenberg virus (SBV), a novel orthobunyavirus of the Simbu serogroup, was first identified in October 2011 in dairy cattle in Germany, where it caused fever, diarrhea and a drop in milk yield. Since then, SBV additionally has been detected in adult sheep and goats. Although symptoms of acute infection were not observed, infection during a vulnerable phase of pregnancy caused congenital malformations and stillbirths. In view of the current situation and the possible emergence of further Simbu serogroup members, a pan-Simbu real-time reverse transcriptase (RT) PCR system for the reliable detection of Simbu serogroup viruses should be developed. Methods In this study a pan-Simbu real-time RT-PCR system was established and compared to several SBV real-time RT-PCR assays. All PCR-systems were tested using a panel of different Simbu serogroup viruses as well as several field samples from diseased cattle, sheep and goats originating from all over Germany. Several pan-Simbu real-time RT-PCR products were sequenced via Sanger sequencing. Furthermore, in silico analyses were performed to investigate suitability for the detection of further orthobunyaviruses. Results All tested members of the Simbu serogroup (n = 14) as well as most of the field samples were successfully detected by the pan-Simbu real-time RT-PCR system. The comparison of this intercalating dye assay with different TaqMan probe-based assays developed for SBV diagnostics confirmed the functionality of the pan-Simbu assay for screening purposes. However, the SBV-TaqMan-assay SBV-S3 delivered the highest analytical sensitivity of less than ten copies per reaction for duplex systems including an internal control. In addition, for confirmation of SBV-genome detection the highly specific SBV-M1 assay was established. Conclusion The pan-Simbu real-time RT-PCR system was able to detect all tested members of the Simbu serogroup, most of the SBV field samples as well as three tested Bunyamwera serogroup viruses with a suitable sensitivity. According to in silico analyses, this system seems to be able to detect a broad orthobunyavirus spectrum. As an additional feature of the pan-Simbu real-time RT-PCR system, subsequent species classification via sequencing is feasible. Regarding SBV diagnostics, the performance of the S-segment targeting SBV-S3 assay was superior with respect to the analytical sensitivity. [ABSTRACT FROM AUTHOR]
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- 2013
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22. Evaluation of two commercial enzyme-linked immunosorbent assay kits for the detection of serum antibodies against Akabane virus in cattle.
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Kittelberger, Reinhold, McFadden, Andrew M. J., Kirkland, Peter D., Hannah, Michaela J., Orr, Della, Bueno, Rudolfo, Swainsbury, Richard, Keen, Denise, Jenner, Judy, French, Jennifer, and Pigott, Clive J.
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ENZYME-linked immunosorbent assay ,SERUM ,IMMUNOGLOBULINS ,AKABANE virus ,CATTLE - Abstract
In New Zealand, an arbovirus surveillance program has been operating for more than 20 years, which includes testing of cattle with the Akabane virus neutralization test. With the aim to replace this laborious test by an easier-to-perform enzyme-linked immunosorbent assay (ELISA), 2 commercial ELISA kits, ELISA-1 from France (originally from Australia) and ELISA-2 from Japan, were compared, using 334 serum samples from noninfected New Zealand cattle, and 548 serum samples from naturally infected cattle herds in Australia. Diagnostic specificities for the test methods were high, ranging from 99.4% to 100%. The diagnostic sensitivities varied considerably between the test methods and differed from the values reported by the manufacturers (94% for each ELISA). The diagnostic sensitivities relative to the virus neutralization test (n = 378) were 96.0% for ELISA-1 or 98.9% when suspect samples were included, and 78.0% for ELISA-2. Differences in the commercial ELISA kits may be explained by the presence of other Simbu serogroup viruses in Australian cattle herds, causing cross-reactions in ELISA-1. Both commercial ELISA kits would be fit for purpose and could replace the virus neutralization test for Akabane virus surveillance in New Zealand. ELISA-1 may be able to detect other Simbu serogroup viruses, should they be present. The current study shows that despite comparable ELISA test characteristics given by the manufacturers, evaluation on the target population revealed marked differences in the ELISA kits test methods’ characteristics. [ABSTRACT FROM PUBLISHER]
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- 2013
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23. Detection of Schmallenberg virus serum neutralising antibodies
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Mansfield, Karen L., Rocca, S. Anna La, Khatri, Meenakshi, Johnson, Nicholas, Steinbach, Falko, and Fooks, Anthony R.
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SIMBU virus , *ANIMAL diseases , *RUMINANTS , *DISEASE prevalence , *VIRUS identification , *DIARRHEA , *MILK yield , *SEROLOGY - Abstract
Abstract: Schmallenberg virus (SBV) emerged in continental Europe in late 2011, and further work is required to assess the prevalence of SBV throughout Europe. Since its detection in Germany, SBV has now been detected in other European countries, including the United Kingdom. Infection with SBV can cause mild clinical signs in ruminants, including diarrhoea and reduced milk yield. However, the virus can have a devastating effect on the developing foetus leading to malformation in newborn offspring. This is a feature shared by other members of the Simbu group of orthobunyaviruses. Since disease in adult animals can be inapparent, serology offers the best method for monitoring for the presence of SBV and assisting in livestock management. This protocol describes a method for initial titration of SBV on African Green Monkey kidney (Vero) cells, and a plaque reduction neutralisation test (PRNT) for the detection of neutralising antibodies against SBV in cattle and sheep sera. This assay can be used to screen ruminant sera in order to confirm exposure to the virus, and the results obtained are comparable to a recently developed commercial enzyme linked immunosorbent assay (ELISA). Thus, these two assays constitute an effective diagnostic tool-box for providing confirmation of exposure to SBV. [Copyright &y& Elsevier]
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- 2013
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24. Validation of a Commercially Available Indirect Elisa Using a Nucleocapside Recombinant Protein for Detection of Schmallenberg Virus Antibodies.
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Bréard, Emmanuel, Lara, Estelle, Comtet, Loïc, Viarouge, Cyril, Doceul, Virginie, Desprat, Alexandra, Vitour, Damien, Pozzi, Nathalie, Cay, Ann Brigitte, De Regge, Nick, Pourquier, Philippe, Schirrmeier, Horst, Hoffmann, Bernd, Beer, Martin, Sailleau, Corinne, and Zientara, Stéphan
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NUCLEOCAPSIDS , *ENZYME-linked immunosorbent assay , *VIRUSES , *SIMBU virus , *BUNYAVIRUSES , *IMMUNOENZYME technique - Abstract
A newly developed Enzym Like Immuno Sorbant Assay (ELISA) based on the recombinant nucleocapsid protein (N) of Schmallenberg virus (SBV) was evaluated and validated for the detection of SBV-specific IgG antibodies in ruminant sera by three European Reference Laboratories. Validation data sets derived from sheep, goat and bovine sera collected in France and Germany (n = 1515) in 2011 and 2012 were categorized according to the results of a virus neutralization test (VNT) or an indirect immuno-flurorescence assay (IFA). The specificity was evaluated with 1364 sera from sheep, goat and bovine collected in France and Belgium before 2009. Overall agreement between VNT and ELISA was 98.9% and 98.3% between VNT and IFA, indicating a very good concordance between the different techniques. Although cross-reactions with other Orthobunyavirus from the Simbu serogroup viruses might occur, it is a highly sensitive, specific and robust ELISA-test validated to detect anti-SBV antibodies. This test can be applied for SBV sero-diagnostics and disease-surveillance studies in ruminant species in Europe. [ABSTRACT FROM AUTHOR]
- Published
- 2013
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25. Simultaneous detection of bovine arboviruses using single-tube multiplex reverse transcription-polymerase chain reaction
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Ohashi, Seiichi, Yoshida, Kazuo, Yanase, Tohru, Kato, Tomoko, and Tsuda, Tomoyuki
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ARBOVIRUSES , *POLYMERASE chain reaction , *BIOLOGICAL assay , *TISSUE culture - Abstract
Single-tube multiplex reverse transcription-polymerase chain reaction (mRT-PCR) assay was developed to detect and identify arboviruses in infected cell-culture fluids and field specimens. The technique was equally sensitive for detecting five different viruses in cell cultures, namely the Chuzan, Ibaraki, and Bluetongue viruses belonging to Orbivirus, and the Akabane virus and Peaton virus belonging to Orthobunyavirus, and was less sensitive than former viruses for detecting Aino virus belonging to Orthobunyavirus. The mRT-PCR reliably detected 0.6–103.1 median tissue culture infective doses. The mRT-PCR readily identified viruses by discriminating the size of their amplified gene products. The technique was as sensitive as virus isolation in detecting single infected plasma in five plasmas from sentinel cattle and in detecting two infectious homogenates in eight homogenates of Culicoides biting midges. The mRT-PCR may be a sensitive and rapid assay for surveillance of bovine arboviruses in field specimens. [Copyright &y& Elsevier]
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- 2004
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26. The emergence in Japan of Sathuperi virus, a tropical Simbu serogroup virus of the genus Orthobunyavirus.
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T. Yanase, T. Fukutomi, K. Yoshida, T. Kato, S. Ohashi, M. Yamakawa, and T. Tsuda
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- *
VIRUSES , *SIMBU virus , *KNEE , *MICROORGANISMS - Abstract
Summary. In 1999, two viruses were isolated from blood samples of sentinel cattle in the Western part of Japan. The physiochemical and morphological properties of these viruses indicated that they belonged to the family Bunyaviridae. Sequence analysis of the S segment indicates that the two viruses are closely related to Sathuperi virus (SATV). The N-terminal 168 amino acid of the G2 protein of the M segment was highly homologous with that of SATV (98.2%). Given these results, we conclude that the newly isolated viruses are closest to SATV, which was initially isolated in India and Nigeria over 30 years ago. [ABSTRACT FROM AUTHOR]
- Published
- 2004
27. Characterization and identification of Oya virus, a Simbu serogroup virus of the genus Bunyavirus, isolated from a pig suspected of Nipah virus infection.
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Kono, Y., Yusnita, Y., Ali, A. R. Mohd, Maizan, M., Sharifah, S. H., Fauzia, O., Kubo, M., and Aziz, A. J.
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NIPAH virus ,CELL culture ,PARAMYXOVIRUSES ,SIMBU virus ,VIRUS diseases ,HOMOLOGY (Biology) - Abstract
Summary. A virus, named Oya virus, was isolated in Vero cell cultures from the lungs of a pig suspected of Nipah virus infection. The virus was revealed as a spherical enveloped RNA virus with a diameter of 79 nm. For identification of Oya virus, RT-PCR was performed. A common primer set for S-RNA of the Simbu serogroup of the genus Bunyavirus was able to amplify a cDNA from Oya virus RNA. The sequence data of the product revealed that the partial gene of Oya virus S-RNA segment had 65–70% homology with published cDNA sequences of Simbu serogroup viruses. The phylogenetic analysis of the data showed that the Oya virus is grouped in Simbu serogroup, but is genetically distinct from the serogroup viruses that have been analyzed molecularly. Serological surveys revealed that the virus distributed widely and densely in Malaysia. [ABSTRACT FROM AUTHOR]
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- 2002
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28. Evolutionary history of Simbu serogroup orthobunyaviruses in the Australian episystem
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Jidong Wang, Rachel Amos-Ritchie, Edward C. Holmes, Kim R. Blasdell, Hong Yin, Steven S. Davis, Cadhla Firth, and Peter J. Walker
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Genotype ,viruses ,Reassortment ,Genome, Viral ,Bunyaviridae Infections ,Genome ,Orthobunyavirus ,Birds ,Evolution, Molecular ,03 medical and health sciences ,Simbu serogroup ,Phylogenetics ,Virology ,Animals ,Humans ,Phylogeny ,030304 developmental biology ,Mammals ,0303 health sciences ,Peaton virus ,biology ,Phylogenetic tree ,Whole Genome Sequencing ,Akabane virus ,030302 biochemistry & molecular biology ,Australia ,Simbu virus ,biology.organism_classification - Abstract
Orthobunyaviruses of the Simbu serogroup are transmitted by insects (primarily biting midges) and infect mammals and/or birds. Many have been associated with disease in livestock or humans. The orthobunyavirus genome comprises three negative-sense RNA segments (L, M and S). We report the complete coding sequences of 57 isolates of Simbu serogroup viruses collected in Australia during 1968–1984. Phylogenetic analysis identified novel genogroups of Akabane virus (AKAV), Aino virus (AINOV) and Peaton virus, and provided evidence of constrained movement of AKAV between epidemiological systems in the northern and eastern regions of the continent. Differential clustering of AKAV isolates in trees inferred from L, M and S segments was indicative of intratypic segment reassortment. Similarly, intertypic segment reassortment was detected between AKAV and Tinaroo virus, and between AINOV and Douglas virus. L segments representing novel genogroups were detected in AINOV reassortants, suggesting the presence of unidentified Simbu group viruses in the episystem.
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- 2019
29. Isolation and characterization of Oya virus a member of Simbu serogroup, family Bunyaviridae, isolated from Karnataka, India
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Prasad Kokate, Deepak Y. Patil, Sneha Srivastava, Santosh Jadhav, Sweena M. Chaudhari, Pragya D Yadav, Vijay P. Bondre, Anita M. Shete, and Devendra T. Mourya
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0301 basic medicine ,Microbiology (medical) ,Swine ,viruses ,030106 microbiology ,India ,Bunyaviridae Infections ,Alphavirus ,Simbu virus ,Antibodies, Viral ,Serogroup ,medicine.disease_cause ,Microbiology ,Virus ,Dengue fever ,03 medical and health sciences ,Chlorocebus aethiops ,Genetics ,medicine ,Animals ,Humans ,Chikungunya ,Vero Cells ,Molecular Biology ,Ecology, Evolution, Behavior and Systematics ,biology ,High-Throughput Nucleotide Sequencing ,Japanese encephalitis ,biology.organism_classification ,medicine.disease ,Virology ,030104 developmental biology ,Infectious Diseases ,Kyasanur forest disease - Abstract
During a study on Japanese encephalitis (JE) from Kolar district of Karnataka state, India in 1986; two virus isolates were obtained in infant Swiss albino mouse from a pig and a human serum sample. For characterization of these virus isolates, they were propagated in Vero CCL-81 cells. These virus isolates were screened for flaviviruses (Japanese encephalitis, West Nile, Dengue, Kyasanur forest disease) and Alphavirus (Chikungunya) by RT-PCR and found to be negative. Further these they were screened for bunyaviruses using genus-specific primers. A virus isolate from a human sample was sequenced using next generation sequencing; which identified it as Oya virus, Simbu group of the genus Orthobunyavirus of the family Bunyaviridae. Phylogenetic analysis of L, M, S (N and NSs) revealed its close association with Chinese strain of Oya virus in Simbu serogroup with the distance of 6.5>4.2>3.2% for nucleotides and 2.4>0.8>0.0% for the amino acid of L>M>S segments respectively. Based on the PCR results; an isolate from pig sample was also confirmed as Oya virus. This study was strengthened by findings of IgG antibody positivity against Oya virus in retrospective serum samples of suspected febrile illness cases from this area by an indigenously developed ELISA. Oya virus positivity was also recorded in human samples collected from Karnataka using nested RT-PCR. This is the first report of the presence of Oya virus in human samples. Further studies are needed to determine disease-causing potential in humans.
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- 2016
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30. Detection of Oropouche virus segment S in patients and inCulex quinquefasciatus in the state of Mato Grosso, Brazil
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Felipe Gomes Naveca, Letícia Borges da Silva Heinen, Nayara Zuchi, Belgath Fernandes Cardoso, Renata Dezengrini Slhessarenko, Otacília Pereira Serra, Marcelo Adriano Mendes dos Santos, and Victor Costa de Souza
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Male ,Orthobunyavirus ,lcsh:QR1-502 ,medicine.disease_cause ,Polymerase Chain Reaction ,lcsh:Microbiology ,Disease Outbreaks ,law.invention ,Dengue fever ,Dengue ,law ,Chlorocebus aethiops ,Prevalence ,Phylogeny ,Polymerase chain reaction ,biology ,Articles ,Middle Aged ,Culex ,RNA, Viral ,Female ,Brazil ,Adult ,Microbiology (medical) ,lcsh:Arctic medicine. Tropical medicine ,Adolescent ,Fever ,Genotype ,lcsh:RC955-962 ,Simbu virus ,Bunyaviridae Infections ,Serogroup ,Young Adult ,Mato Grosso ,parasitic diseases ,medicine ,Animals ,Humans ,Vero Cells ,Aged ,mosquitoes ,Base Sequence ,OROV ,Oropouche virus ,phylogenetic analysis ,Outbreak ,medicine.disease ,biology.organism_classification ,Virology ,Culex quinquefasciatus ,Animal Distribution - Abstract
This study aimed to investigate the circulation of Orthobunyavirus species in the state of Mato Grosso (MT) Brazil. During a dengue outbreak in 2011/2012, 529 serum samples were collected from patients with acute febrile illness with symptoms for up to five days and 387 pools of female Culex quinquefasciatus captured in 2013 were subjected to nested-reverse transcription-polymerase chain reaction for segment S of the Simbu serogroup followed by nucleotide sequencing and virus isolation in Vero cells. Patients (5/529; 0.9%) from Cuiabá (n = 3), Várzea Grande (n = 1) and Nova Mutum (n = 1) municipalities were positive for the S segment of Oropouche virus (OROV). Additionally, eight/387 Cx. quinquefasciatus pools were positive for the segment, with a minimum infection rate of 2.3. Phylogenetic analysis indicated that all the samples belong to the subgenotype Ia, presenting high homology with OROV strains obtained from humans and animals in the Brazilian Amazon. The present paper reports the first detection of an Orthobunyavirus, possibly OROV, in patients and in Cx. quinquefasciatus mosquitoes in MT. This finding reinforces the notion that arboviruses frequently reported in the Amazon Region circulate sporadically in MT during dengue outbreaks.
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- 2015
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31. Nucleoprotein from the unique human infecting orthobunyavirus of simbu serogroup (Oropouche virus) forms higher order oligomers in complex with nucleic acids in vitro
- Author
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Leandro F. Estrozi, Daphna Fenel, Juliana Londoño Murillo, Juliete Vitorino dos Santos, Márcia Aparecida Sperança, João R. C. Muniz, Aline Diniz Cabral, Mabel Uehara, Viviam M. da Silva, Wanius Garcia, Centro de Ciências Naturais e Humanas, Universidade Federal do ABC (UFABC), Instituto de Física de São Carlos (IFSC-USP), Universidade de São Paulo (USP), Institut de biologie structurale (IBS - UMR 5075 ), Université Grenoble Alpes [2016-2019] (UGA [2016-2019])-Institut de Recherche Interdisciplinaire de Grenoble (IRIG), Direction de Recherche Fondamentale (CEA) (DRF (CEA)), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Direction de Recherche Fondamentale (CEA) (DRF (CEA)), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Centre National de la Recherche Scientifique (CNRS), Plateforme Microscopie Electronique, Universidade Federal do ABC = Federal University of ABC = Université Fédérale de l'ABC [Brazil] (UFABC), Universidade de São Paulo = University of São Paulo (USP), Centre National de la Recherche Scientifique (CNRS)-Université Grenoble Alpes [2016-2019] (UGA [2016-2019])-Institut de Recherche Interdisciplinaire de Grenoble (IRIG), and Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)
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Viral protein ,0301 basic medicine ,Clinical Biochemistry ,Genome, Viral ,Biology ,Nucleoprotein–RNA complex ,medicine.disease_cause ,Biochemistry ,Orthobunyavirus ,Viral Proteins ,03 medical and health sciences ,medicine ,Humans ,[SDV.BBM.BS]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Structural Biology [q-bio.BM] ,Oropouche virus ,Organic Chemistry ,Viral nucleocapsid ,Simbu virus ,RNA ,biology.organism_classification ,Virology ,3. Good health ,Nucleoprotein ,Oropouche ,Nucleoproteins ,030104 developmental biology ,Nucleic acid ,RNA, Viral ,Protein Multimerization ,Bunyaviridae ,Arboviruses - Abstract
International audience; Oropouche virus (OROV) is the unique known human pathogen belonging to serogroup Simbu of Orthobunyavirus genus and Bunyaviridae family. OROV is transmitted by wild mosquitoes species to sloths, rodents, monkeys and birds in sylvatic environment, and by midges (Culicoides paraensis and Culex quinquefasciatus) to man causing explosive outbreaks in urban locations. OROV infection causes dengue fever-like symptoms and in few cases, can cause clinical symptoms of aseptic meningitis. OROV contains a tripartite negative RNA genome encapsidated by the viral nucleocapsid protein (NP), which is essential for viral genome encapsidation, transcription and replication. Here, we reported the first study on the structural properties of a recombinant NP from human pathogen Oropouche virus (OROV-rNP). OROV-rNP was successfully expressed in E. coli in soluble form and purified using affinity and size-exclusion chromatographies. Purified OROV-rNP was analyzed using a series of biophysical tools and molecular modeling. The results showed that OROV-rNP formed stable oligomers in solution coupled with endogenous E. coli nucleic acids (RNA) of different sizes. Finally, electron microscopy revealed a total of eleven OROV-rNP oligomer classes with tetramers (42%) and pentamers (43%) the two main populations and minor amounts of other bigger oligomeric states, such as hexamers, heptamers or octamers. The different RNA sizes and nucleotide composition may explain the diversity of oligomer classes observed. Besides, structural differences among bunyaviruses NP can be used to help in the development of tools for specific diagnosis and epidemiological studies of this group of viruses.
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- 2018
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32. Pathogenicity and teratogenicity of Schmallenberg virus and Akabane virus in experimentally infected chicken embryos
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John F. Mee, Áine B. Collins, and Peter D. Kirkland
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0301 basic medicine ,Orthobunyavirus ,040301 veterinary sciences ,Virulence ,Chick Embryo ,Simbu virus ,Biology ,Bunyaviridae Infections ,Microbiology ,0403 veterinary science ,03 medical and health sciences ,Animals ,General Veterinary ,Inoculation ,Akabane virus ,Schmallenberg virus ,Embryo ,04 agricultural and veterinary sciences ,General Medicine ,biology.organism_classification ,Pathogenicity ,Virology ,030104 developmental biology ,Teratogens - Abstract
Schmallenberg virus (SBV) and Akabane virus (AKAV) are teratogenic Simbu serogroup Orthobunyaviruses. Embryonated chicken egg models (ECE) have been used to study the pathogenicity and teratogenicity of Simbu viruses previously, however to date no such studies have been reported for SBV. Hence, the aims of this study were to investigate if ECE are susceptible to experimental SBV infection, and to evaluate the pathogenicity and teratogenicity of SBV and AKAV in ECE models. Two studies were conducted. In Study A, SBV (106.4 TCID50) was inoculated into the yolk-sac of 6-day-old and 8-day-old ECEs. In Study B, SBV and AKAV were inoculated into 7-day-old ECEs at a range of doses (102.0–106.0 TCID50). ECE were incubated at 37 °C until day 19, when they were submitted for pathological and virological examination. SBV infection in ECE at 6, 7 and 8 days of incubation resulted in stunted growth and musculoskeletal malformations (arthrogryposis, skeletal muscle atrophy, contracted toes, distorted and twisted legs). Mortality was greater in embryos inoculated with SBV (31%) compared to AKAV (19%), (P These studies demonstrate for the first time that the ECE model is a suitable in vivo small animal model to study SBV. Furthermore, these results are consistent with the clinico-pathological findings of natural SBV and AKAV infection in ruminants.
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- 2017
33. Serological evidence suggests that several Simbu serogroup viruses circulated in Israel
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Jacob, Brenner, Tohru, Yanase, Tomoko, Kato, Shamai, Yaakobi, Evgeny, Khinich, Rita, Paz, Tomoyuki, Tsuda, and Adi, Behar
- Subjects
Sheep ,Animals ,Cattle Diseases ,Sheep Diseases ,Simbu virus ,Cattle ,Female ,Israel ,Bunyaviridae Infections ,Serogroup - Abstract
Viruses of the Simbu serogroup are arboviruses that are known to cause outbreaks of abortion, stillbirth and congenitally deformed neonates. This study presents the results of antibody screening of Simbu serogroup viruses in heifers born in Israel after October 2013, and in adult milking cows born before May 2012. Thirteen dairy cattle farms in five regions, and one sheep flock, entered this study. Serum samples that were found to be positive by ELISA were further tested by specific virus- neutralization test against a panel of Simbu serogroup viruses including Akabane, Aino, Sathuperi, Shamonda, and Peaton viruses. Antibody detection in lactating adult cows revealed that several viruses were circulating in Israel between 2008-2014. Moreover, during autumn 2014 the heifers became serum-positive after being exposed to more than one Simbu serogroup virus concurrently. The results of this study shed new light on Simbu virus infections in Israel, and may contribute to the epidemiology of the Simbu serogroup around the Mediterranean Basin in general.
- Published
- 2017
34. Schmallenberg Virus as Possible Ancestor of Shamonda Virus.
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Goller, Katja V., Höper, Dirk, Schirrmeier, Horst, Mettenleiter, Thomas C., and Beer, Martin
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SIMBU virus , *VIRAL genetics , *SEROLOGY , *NUCLEOTIDE sequence , *AKABANE virus , *BUNYAVIRUSES - Abstract
The article discusses a study which examined the genetic and serologic relationship of the Schmallenberg virus (SBV) to other Simbu serogroup viruses. Full-genome sequence of the Akabane virus (AKAV) and Oropouche virus (OROV) were obtained from the reference genome database of the National Center for Biotechnology Information. Results of the study showed that the L gene sequence of SBV had the lowest identity to OROV, while the highest identity was linked to Shamonda virus (SHAV). The study also observed a low sequence identity of the SHAV M gene to the other Simbu serogroup viruses.
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- 2012
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35. Development and analytical validation of a group-specific RT-qPCR assay for the detection of the Simbu serogroup orthobunyaviruses
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Robert Swanepoel, A.A.R. Camarão, Melvyn Quan, and Fernando Boinas
- Subjects
0301 basic medicine ,Orthobunyavirus ,030106 microbiology ,Cattle Diseases ,Bunyaviridae Infections ,Real-Time Polymerase Chain Reaction ,Serogroup ,Sensitivity and Specificity ,Virus ,03 medical and health sciences ,Simbu serogroup ,Virology ,TaqMan ,Animals ,Clade ,Phylogeny ,DNA Primers ,biology ,Simbu virus ,Outbreak ,Schmallenberg virus ,biology.organism_classification ,030104 developmental biology ,Cattle ,Ingwavuma virus ,DNA Probes - Abstract
The Simbu serogroup within the genus Orthobunyavirus belongs to the family Peribunyaviridae and comprises 32 recognised three-segmented negative-sense single-stranded RNA viruses, with a cosmopolitan distribution. This group of arthropod-borne viruses includes important pathogens of humans and domestic animals e.g. Oropouche orthobunyavirus and Schmallenberg virus. Sensitive and specific diagnostic tools are required for recognition and control of outbreaks. A novel TaqMan® RT-qPCR assay was developed, optimised and analytically validated for the broad detection of the Simbu serogroup orthobunyaviruses. A region in the S segment, which encodes the nucleocapsid protein, was used to design a group primer set and a pair of differently labelled TaqMan® minor groove binder probes to distinguish phylogenetic clade A and B of the serogroup. Efficiencies determined for seven members of the group were 99% for Akabane orthobunyavirus (AKAV), 96% for Simbu orthobunyavirus (SIMV), 96% for Shuni orthobunyavirus (SHUV), 97% for Sathuperi orthobunyavirus (SATV), 84% for Shamonda orthobunyavirus (SHAV), 93% for Ingwavuma virus (INGV, now classified as Manzanilla orthobunyavirus) and 110% for Sabo virus (SABOV, now classified as AKAV). The 95% limit of detection (TCID50/reaction) was 10-3.61 for AKAV, 10-2.38 for SIMV, 10-3.42 for SHUV, 10-3.32 for SATV, 10-1.67 for SHAV, 100.39 for INGV and 10-2.70 for SABOV.
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- 2019
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36. What can Akabane disease teach us about other arboviral diseases
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Jacob, Brenner, Ditza, Rotenberg, Shami, Jaakobi, Yehuda, Stram, Merisol, Guini-Rubinstein, Sofia, Menasherov, Michel, Bernstein, Yudith, Yaakobovitch, Dan, David, and Samuel, Perl
- Subjects
Animals ,Cattle Diseases ,Simbu virus ,Cattle ,Arbovirus Infections ,Israel ,Bunyaviridae Infections - Abstract
Viruses of the Simbu serogroup cause lesions to foetuses that are seen at birth and that correlate with the stage of pregnancy at which the dam first contracts the virus. The Simbu serogroup comprises arboviruses known to cause outbreaks of abnormal parturitions in domestic ruminants; these abnormalities include abortion, stillbirth, and congenitally deformed neonates. Simbu serogroup members include: Akabane virus (AKAV), Aino virus, Cache Valley virus, and Schmallenberg virus. Lately, dairy herds calf malformations have been observed in Europe, where there have been reports of clinical manifestations such as diarrhoea, fever, and reduced milk yield in adult lactating cows. The Israeli dairy cattle industry has experienced 2 major episodes of abnormal parturitions that resulted from 2 arboviral Simbu serogroup episodes, which occurred 35 years apart. A wave of apparently newly introduced AKAV was noted from the beginning of January 2012. Investigations carried out throughout the period of late Summer 2011 to early Winter 2012, associated the Israeli AKAV strain with central nervous system manifestations in lactating cows. A lack of clinical/epidemiological 'uniformity' among the AKAV infections was noted during these investigations. Here we describe and discuss the clinical and spatial distribution differences found among the 3 above-mentioned outbreaks. Comparable features in the clinical presentation, spatial distribution, and target‑animal issues relating to Akabane disease are discussed.
- Published
- 2016
37. Effective interference between Simbu serogroup orthobunyaviruses in mammalian cells
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Emiliana Brocchi, Martin Beer, and Kerstin Wernike
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0301 basic medicine ,viruses ,030106 microbiology ,Reassortment ,medicine.disease_cause ,Bunyaviridae Infections ,Serogroup ,Virus Replication ,Microbiology ,Orthobunyavirus ,Virus ,Cell Line ,03 medical and health sciences ,Species Specificity ,Cricetinae ,Veterinary virology ,medicine ,Animals ,Virus classification ,General Veterinary ,biology ,Coinfection ,Antibodies, Monoclonal ,Simbu virus ,Schmallenberg virus ,General Medicine ,biology.organism_classification ,medicine.disease ,Virology ,Superinfection - Abstract
The Simbu serogroup of orthobunyaviruses comprises a wide range of viruses with different medical and veterinary relevance. These viruses are known to reassort, and coinfection of the same cell is one of the prerequisites for reassortment. Here, a mammalian cell line was infected with various members of this virus group, inoculated after several time points with a second Simbu serogroup virus, and analyzed by strain or species specific immunofluorescence staining. Different virus species or different strains of the same virus species were able to co-infect mammalian cells, but only for a limited time frame. After a few hours, the replication of the first virus led to a gradual inhibition of a second virus until a complete resistance to superinfection after 24 h regardless whether it is another strain of the same virus species or a distinct member of the serogroup.
- Published
- 2016
38. Characterization of Unknown Orthobunya-Like Viruses from India
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Pragya D Yadav, John D. Klena, Alicia Francis, Prasad Sarkale, Shannon L M Whitmer, Stuart T. Nichol, Gouri Chaubal, Ute Ströher, and Devendra T. Mourya
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0301 basic medicine ,Orthobunyavirus ,Swine ,Reassortment ,lcsh:QR1-502 ,India ,Chick Embryo ,Genome, Viral ,Bunyaviridae Infections ,Serogroup ,Article ,lcsh:Microbiology ,Mice ,03 medical and health sciences ,Simbu serogroup ,Virology ,Manzanilla virus ,Animals ,Humans ,Passeriformes ,Clade ,Phylogeny ,Genetics ,biology ,pathogen discovery ,High-Throughput Nucleotide Sequencing ,Simbu virus ,biology.organism_classification ,Isolation (microbiology) ,Cat Que virus ,030104 developmental biology ,Infectious Diseases ,Jungle myna ,RNA, Viral ,Identification (biology) - Abstract
Next-generation sequencing (NGS) of agents causing idiopathic human diseases has been crucial in the identification of novel viruses. This study describes the isolation and characterization of two novel orthobunyaviruses obtained from a jungle myna and a paddy bird from Karnataka State, India. Using an NGS approach, these isolates were classified as Cat Que and Balagodu viruses belonging to the Manzanilla clade of the Simbu serogroup. Closely related viruses in the Manzanilla clade have been isolated from mosquitos, humans, birds, and pigs across a wide geographic region. Since Orthobunyaviruses exhibit high reassortment frequency and can cause acute, self-limiting febrile illness, these data suggest that human and livestock infections of the Oya/Cat Que/Manzanilla virus may be more widespread and/or under-reported than anticipated. It therefore becomes imperative to identify novel and unknown viruses in order to understand their role in human and animal pathogenesis. The current study is a step forward in this regard and would act as a prototype method for isolation, identification and detection of several other emerging viruses.
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- 2018
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39. Reemergence of Oropouche Fever, Northern Brazil
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Helena Baldez Vasconcelos, Hamilton Antônio de Oliveira Monteiro, Pedro Fernando da Costa Vasconcelos, Márcio Roberto Teixeira Nunes, Jannifer Oliveira Chiang, Raimunda do Socorro da Silva Azevedo, Gilberta Bensabath, Sueli Rodrigues, Ana Yecê das Neves Pinto, and Lívia Carício Martins
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Male ,Microbiology (medical) ,Adolescent ,Genotype ,Epidemiology ,Virus isolation ,Molecular Sequence Data ,Oropouche fever ,Nucleotide sequencing ,lcsh:Medicine ,Enzyme-Linked Immunosorbent Assay ,Simbu virus ,Biology ,Bunyaviridae Infections ,medicine.disease_cause ,Communicable Diseases, Emerging ,Disease Outbreaks ,lcsh:Infectious and parasitic diseases ,Serology ,medicine ,Humans ,lcsh:RC109-216 ,Child ,Phylogeny ,reemergence ,Oropouche virus ,lcsh:R ,Infant ,dispatch ,Brazilian Amazon ,medicine.disease ,Virology ,Infectious Diseases ,Child, Preschool ,outbreaks ,Female ,Brazil - Abstract
Oropouche fever has reemerged in Parauapebas and Porto de Moz municipalities, Pará State, Brazil. Serologic analysis (immunoglobulin M-ELISA) and virus isolation confirmed Oropouche virus (OROV) in both municipalities. Nucleotide sequencing of 2 OROV isolates from each location indicated genotypes I (Parauapebas) and II (Porto de Moz) in Brazil.
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- 2007
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40. The emergence in Japan of Sathuperi virus , a tropical Simbu serogroup virus of the genus Orthobunyavirus
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Kazuo Yoshida, Seiichi Ohashi, T. Fukutomi, Tohru Yanase, Makoto Yamakawa, Tomoyuki Tsuda, and Tomoko Kato
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Serotype ,medicine.medical_specialty ,Sequence analysis ,viruses ,Molecular Sequence Data ,Simbu virus ,Virus ,Microbiology ,Viral Proteins ,Medical microbiology ,Japan ,Phylogenetics ,Virology ,medicine ,Animals ,Amino Acid Sequence ,Serotyping ,Peptide sequence ,Phylogeny ,Sequence Homology, Amino Acid ,biology ,Sequence Analysis, RNA ,General Medicine ,biology.organism_classification ,RNA, Viral ,Cattle ,Bunyaviridae ,Sequence Alignment - Abstract
In 1999, two viruses were isolated from blood samples of sentinel cattle in the Western part of Japan. The physiochemical and morphological properties of these viruses indicated that they belonged to the family Bunyaviridae. Sequence analysis of the S segment indicates that the two viruses are closely related to Sathuperi virus (SATV). The N-terminal 168 amino acid of the G2 protein of the M segment was highly homologous with that of SATV (98.2%). Given these results, we conclude that the newly isolated viruses are closest to SATV, which was initially isolated in India and Nigeria over 30 years ago.
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- 2004
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41. Rapid Detection of Human Pathogenic Orthobunyaviruses
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Veronique Rudaz, Pedro Fernando da Costa Vasconcelos, Márcio Roberto Teixeira Nunes, Manfred Weidmann, and Frank T. Hufert
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Microbiology (medical) ,Time Factors ,Bunyaviridae ,Bunyaviridae Infections ,Simbu virus ,medicine.disease_cause ,Sensitivity and Specificity ,Orthobunyavirus ,Cell Line ,Virology ,Chlorocebus aethiops ,medicine ,Animals ,Humans ,Taq Polymerase ,Vero Cells ,DNA Primers ,Hantavirus ,Nairovirus ,biology ,Reverse Transcriptase Polymerase Chain Reaction ,Oropouche virus ,biology.organism_classification ,Phlebovirus ,RNA, Viral - Abstract
Modern detection and identification tools can help to provide answers to urgent questions about the incidence, prevalence, and epidemiology of currently emerging diseases. We developed highly sensitive one-step TaqMan reverse transcription-PCR assays with sensitivities ranging from 10 4 to 10 1 molecules for 11 human pathogens of the orthobunyaviruses. We compared the performances of these assays on three currently available cyclers (ABI-PRISM 7700, LightCycler, and SmartCycler). The assay for Oropouche virus (OROV) was tested using sera collected from days 1 to 5 after onset of OROV disease and was found to be greatly superior to an established nested PCR system. A mean copy number of 1.31 10 7 OROV RNA/ml of serum was detected. Diagnostic RNA detection can be used as early as day 1 after onset of OROV disease. The use of a mobile SmartCycler and a hands-on time of less than 3 h could help to intensify outbreak surveillance and control, especially in field studies. The Bunyaviridae family of viruses is subdivided into five genera. Except for the plant pathogenic genus Tospovirus, the Orthobunyavirus, Hantavirus, Nairovirus, and Phlebovirus genera are composed of enzootic viruses, some of which cause zoonotic disease in humans. As is the case with many zoonoses, humans act as accidental dead-end hosts of a zoonotic transmission cycle oscillating between mammals (mostly rodents) and arthropods (Orthobunyavirus, Nairovirus, and Phlebovirus) or among rodents via aerosols and bite wounds (Hantavirus). There are 330 known viruses in these four genera, and 174 are listed as belonging to the genus Orthobunyavirus, including half of the approximately 60 Bunyaviridae viruses causing disease in humans (10, 11).
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- 2003
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42. Schmallenberg Virus as Possible Ancestor of Shamonda Virus
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Dirk Höper, Katja V. Goller, Martin Beer, Thomas C. Mettenleiter, and Horst Schirrmeier
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Microbiology (medical) ,Shamonda virus ,Orthobunyavirus ,040301 veterinary sciences ,Epidemiology ,viruses ,Expedited ,Reassortment ,lcsh:Medicine ,Genome, Viral ,Simbu virus ,Biology ,phylogeny ,Bunyaviridae Infections ,lcsh:Infectious and parasitic diseases ,Cell Line ,0403 veterinary science ,Evolution, Molecular ,03 medical and health sciences ,taxonomy ,Species Specificity ,Veterinary virology ,Reassortant Viruses ,taxonomic classification ,Animals ,lcsh:RC109-216 ,030304 developmental biology ,2. Zero hunger ,Genetics ,Recombination, Genetic ,0303 health sciences ,Simbu serogroup ,Akabane virus ,lcsh:R ,Dispatch ,Schmallenberg virus ,04 agricultural and veterinary sciences ,biology.organism_classification ,Virology ,3. Good health ,Infectious Diseases ,Novel virus - Abstract
A novel virus, Schmallenberg virus (SBV), was discovered in Europe in October 2011, and since then, cases of SBV infection have been reported in sheep, cattle, and goats in several European countries (1–4). Preliminary phylogenetic analyses revealed that SBV is a member of the genus Orthobunyavirus within the family Bunyaviridae and is related to Simbu serogroup viruses (1). Similar to Akabane virus (AKAV), another Simbu serogroup virus, SBV can cause fatal congenital defects by infection of fetuses during a susceptible stage in pregnancy (2). Vaccines for SBV are not available. Thus, SBV poses a serious threat to naive populations of ruminant livestock in Europe. Orthobunyaviruses are arthropod-borne viruses with a negative-stranded tripartite RNA genome comprising large (L), medium (M), and small (S) segments. Genetic reassortment occurs naturally among these viruses, which results in the emergence of new virus strains that have altered biologic properties (5). The L segment encodes the RNA-dependent RNA polymerase; antigenic determinants are the M-encoded viral surface glycoproteins Gn and Gc, which are responsible for viral attachment, cell fusion, hemagglutination, and the induction of neutralizing antibodies, and the S-encoded nucleocapsid protein N, which plays a role in complement fixation (6). In the pregenomics era, orthobunyavirus relationships were determined solely by serologic cross-reactivity analyses (7), but since DNA sequencing became available, phylogenetic relationships have additionally been assessed by comparison of partial genome sequences (8,9). However, published full-length genome sequence information is sparse, which makes in-depth phylogenetic analysis difficult. Therefore, a detailed taxonomic classification of SBV could not be made initially when the virus emerged. The first report of SBV showed highest similarities of M- and L-segment sequences to partial Aino virus and AKAV sequences, whereas the N gene was most closely related to Shamonda virus (SHAV) (1). Additionally, results of recent investigations on complete N and M genes and partial L genes of SHAV, Douglas virus (DOUV), and Sathuperi virus (SATV) suggested that SBV is a reassortant consisting of the M segment from SATV and the S and L segments from SHAV (9). Conversely, in 2001, SHAV was described as a reassortant virus comprising the S and L segments of SATV and the M segment from the unclassified Yaba-7 virus (8). To clarify the phylogenetic relationships and classification of SBV within the Simbu serogroup, we conducted genetic and serologic investigations of its relationship to 9 other Simbu serogroup viruses.
- Published
- 2012
43. Characterization and identification of Oya virus, a Simbu serogroup virus of the genus Bunyavirus, isolated from a pig suspected of Nipah virus infection
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O. Fauzia, M. Kubo, A. R. Mohd Ali, Y. Yusnita, Y. Kono, S.H. Sharifah, M. Maizan, and Asfia Aziz
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Swine ,viruses ,Molecular Sequence Data ,Antibodies, Viral ,Virus ,Microbiology ,Serology ,Cytopathogenic Effect, Viral ,Virology ,Complementary DNA ,Chlorocebus aethiops ,Veterinary virology ,Animals ,Vero Cells ,Paramyxoviridae Infections ,Base Sequence ,biology ,Reverse Transcriptase Polymerase Chain Reaction ,Simbu virus ,RNA virus ,General Medicine ,biology.organism_classification ,Vero cell ,Paramyxovirinae ,Viral disease ,Bunyaviridae - Abstract
A virus, named Oya virus, was isolated in Vero cell cultures from the lungs of a pig suspected of Nipah virus infection. The virus was revealed as a spherical enveloped RNA virus with a diameter of 79 nm. For identification of Oya virus, RT-PCR was performed. A common primer set for S-RNA of the Simbu serogroup of the genus Bunyavirus was able to amplify a cDNA from Oya virus RNA. The sequence data of the product revealed that the partial gene of Oya virus S-RNA segment had 65-70% homology with published cDNA sequences of Simbu serogroup viruses. The phylogenetic analysis of the data showed that the Oya virus is grouped in Simbu serogroup, but is genetically distinct from the serogroup viruses that have been analyzed molecularly. Serological surveys revealed that the virus distributed widely and densely in Malaysia.
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- 2002
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44. Diagnosis of Oropouche virus infection by RT-nested-PCR
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Marcos Lázaro Moreli, Victor Hugo Aquino, Ana Cecília Ribeiro Cruz, and Luiz Tadeu Moraes Figueiredo
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Sequence analysis ,viruses ,Molecular Sequence Data ,Oropouche fever ,Biology ,Bunyaviridae Infections ,medicine.disease_cause ,Genome ,Simbu serogroup ,Virology ,medicine ,Humans ,Base sequence ,DNA Primers ,Base Sequence ,Reverse Transcriptase Polymerase Chain Reaction ,Oropouche virus ,Simbu virus ,Sequence Analysis, DNA ,medicine.disease ,Infectious Diseases ,DNA, Viral ,RNA, Viral ,Rt nested pcr ,Nested polymerase chain reaction - Abstract
Using the RT-PCR with primers that anneal to the 5' and the 3' extremities of the genome segments of bunyaviruses and internal primers that anneal to the S segment of Simbu serogroup viruses in a nested PCR it was possible to amplify the Oropouche virus (ORO) genome from the sera of three patients. These results show that this RT-nested-PCR is a useful tool for rapid diagnosis of Oropouche fever infections.
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- 2001
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45. Jatobal virus is a reassortant containing the small RNA of Oropouche virus
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Robert E. Shope, Amelia P.A. Travassos Da Rosa, Li Li, Mohammad F. Saeed, Robert B. Tesh, Heiman Wang, David W.C. Beasley, Alan D.T. Barrett, and Miguel T. Suderman
- Subjects
Cancer Research ,Small RNA ,viruses ,Molecular Sequence Data ,Virulence ,Viral Nonstructural Proteins ,Biology ,Bunyaviridae Infections ,medicine.disease_cause ,Virus ,Neutralization ,Neutralization Tests ,Cricetinae ,Virology ,Genotype ,medicine ,Animals ,Amino Acid Sequence ,Nucleocapsid ,Gene ,Mesocricetus ,Oropouche virus ,Simbu virus ,RNA ,Infectious Diseases ,RNA, Viral ,Female ,Reassortant Viruses - Abstract
Jatobal (JAT) virus was isolated in 1985 from a carnivore (Nasua nasua) in Tucurui, Para state, Brazil and was classified as a distinct member of the Simbu serogroup of the Bunyavirus genus, family Bunyaviridae on the basis of neutralization tests. On the basis of nucleotide sequencing, we have found that the small (S) RNA of JAT virus is very similar (>95% identity) to that of Oropouche (ORO) virus, in particular, the Peruvian genotype of ORO virus. In comparison, limited nucleotide sequencing of the G2 protein gene, encoded by the middle (M) RNA, of JAT and ORO viruses, revealed relatively little identity (
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- 2001
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46. Diagnosis of Oropouche Virus Infection Using a Recombinant Nucleocapsid Protein-Based Enzyme Immunoassay
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Douglas M. Watts, Robert B. Tesh, Robert E. Shope, Kevin L. Russell, Pedro Fernando da Costa Vasconcelos, Márcio Roberto Teixeira Nunes, Alan D.T. Barrett, Amelia P.A. Travassos Da Rosa, and Mohammad F. Saeed
- Subjects
Anticorpos / sangue ,Microbiology (medical) ,C?lulas Vero ,viruses ,V?rus Oropouche ,Antibodies, Viral ,Bunyaviridae Infections ,Recombinant virus ,medicine.disease_cause ,Prote?nas do Nucleocaps?deo / gen?tica ,Infec??es por Bunyaviridae / virologia ,Virus ,Serology ,Immunoenzyme Techniques ,Virology ,Cricetinae ,Chlorocebus aethiops ,medicine ,Animals ,Humans ,Antigens, Viral ,Vero Cells ,Prote?nas do Nucleocaps?deo / imunologia ,Mesocricetus ,biology ,medicine.diagnostic_test ,Oropouche virus ,Simbu virus ,Nucleocapsid Proteins ,Infec??es por Bunyaviridae / epidemiologia ,Recombinant Proteins ,Immunoglobulin M ,Immunoglobulin G ,Immunoassay ,biology.protein ,Viral disease ,Antibody - Abstract
NIH grants AI 43336 and AI 10984 The University of Texas Medical Branch. Departments of Microbiology and Immunology. Galveston, Texas / The University of Texas Medical Branch. Departments of Microbiology and Pathology. Galveston, Texas. Minist?rio da Sa?de. Funda??o Nacional de Sa?de. Instituto Evandro Chagas. Bel?m, PA, Brasil. Minist?rio da Sa?de. Funda??o Nacional de Sa?de. Instituto Evandro Chagas. Bel?m, PA, Brasil. Minist?rio da Sa?de. Funda??o Nacional de Sa?de. Instituto Evandro Chagas. Bel?m, PA, Brasil. U.S. Naval Medical Research Center. Detachment, Lima, Peru. U.S. Naval Medical Research Center. Detachment, Lima, Peru. The University of Texas Medical Branch. Departments of Microbiology and Immunology. Galveston, Texas / The University of Texas Medical Branch. Departments of Microbiology and Pathology. Galveston, Texas / The University of Texas Medical Branch. Center for Tropical Diseases. Galveston, Texas. The University of Texas Medical Branch. Departments of Microbiology and Immunology. Galveston, Texas / The University of Texas Medical Branch. Departments of Microbiology and Pathology. Galveston, Texas / The University of Texas Medical Branch. Center for Tropical Diseases. Galveston, Texas. Oropouche (ORO) virus is an emerging infectious agent that has caused numerous outbreaks of an acute febrile (dengue-like) illness among humans in Brazil, Peru, and Panama. Diagnosis of ORO virus infection is based mainly on serology. Two different antigens, hamster serum antigen (HSA) and Vero cell lysate antigen (VCLA), are currently used in enzyme immunoassays (EIAs) in Brazil and Peru, respectively, to investigate the epidemiology of ORO virus infection. Both antigens involve use of infectious virus, and for this reason their use is restricted. Consequently, the frequency and distribution of ORO virus infection are largely unexplored in other countries of South America. This report describes the use of a bacterially expressed recombinant nucleocapsid (rN) protein of ORO virus in EIAs for the diagnosis of ORO virus infection. The data revealed that the purified rN protein is comparable to the authentic viral N protein in its antigenic characteristics and is highly sensitive and specific in EIAs. Among 183 serum samples tested, a high degree of concordance was found between rN protein-based EIA and HSA- and VCLA-based EIAs for the detection of both ORO virus-specific immunoglobulin M (IgM) and IgG antibodies. The high sensitivity, specificity, and safety of the rN protein-based EIA make it a useful diagnostic technique that can be widely used to detect ORO virus infection in South America.
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- 2001
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47. Identification of Simbu, California and Bunyamwera serogroup bunyaviruses by nested RT-PCR
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Victor Hugo Aquino, Marcos Lázaro Moreli, and Luiz Tadeu Moraes Figueiredo
- Subjects
Simbu virus ,Biology ,Bunyaviridae Infections ,medicine.disease_cause ,Orthobunyavirus ,Virus ,law.invention ,law ,medicine ,Humans ,Bunyamwera virus ,Polymerase chain reaction ,Genetics ,Base Sequence ,Reverse Transcriptase Polymerase Chain Reaction ,Oropouche virus ,Public Health, Environmental and Occupational Health ,General Medicine ,Amplicon ,biology.organism_classification ,Virology ,Infectious Diseases ,RNA, Viral ,Parasitology ,Bunyaviridae ,Nested polymerase chain reaction - Abstract
We describe a reverse transcription-polymerase chain reaction (RT-PCR) with primers that anneal to the 5′ and 3′ ends and amplify the Bunyavirus S RNA segments. The RT-PCR was done on the fluids of C6/36 cells infected with each of 21 bunyaviruses. The bunyaviruses studied, with the exception of Catu virus, produced amplicons having 700 to 1300 base pairs and probably contained the whole S RNA segment sequence. A nested PCR performed with these amplicons distinguished California and most Bunyamwera serogroup viruses from other bunyaviruses by use of BBC specific internal primers for the S RNA segment, and distinguished Simbu serogroup viruses from others by use of BS specific internal primers. The nested-PCR amplicons of Guaroa, Maguari, California encephalitis, Bunyamwera, and Oropouche viruses were sequenced. The sequences were aligned with previously known sequences of the S RNA segment of the same viruses, showing a high degree of homology and thus confirming the specific origin of these amplicons. The nested RT-PCR is suitable as a specific screening for most California and Bunyamwera serogroup and Simbu serogroup viruses depending on the use of BBC or BS internal primers. Oropouche virus is an important public health problem in Brazil and the nested PCR with BS primers could be used for the detection of this virus in tissue culture and mouse brain isolates as well as in clinical samples.
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- 2001
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48. Malformations Caused by Shuni Virus in Ruminants, Israel, 2014–2015
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Velizar Bumbarov, A. Panshin, Natalia Golender, Nir Edery, Shimon Pismanik, Jacob Brenner, Motti Valdman, Adi Behar, and Yevgeny Khinich
- Subjects
Microbiology (medical) ,Letter ,Epidemiology ,lcsh:Medicine ,Simbu virus ,Arbovirus Infections ,Serology ,lcsh:Infectious and parasitic diseases ,medicine ,Humans ,emerging disease ,viruses ,lcsh:RC109-216 ,Israel ,Letters to the Editor ,Malformations Caused by Shuni Virus in Ruminants, Israel, 2014–15 ,congenital abnormalities ,Phylogenetic tree ,biology ,Akabane virus ,lcsh:R ,Outbreak ,Schmallenberg virus ,Ruminants ,medicine.disease ,biology.organism_classification ,Virology ,animals ,malformation ,Infectious Diseases ,Vero cell ,Shuni virus ,orthobunyaviruses ,Encephalitis ,Arboviruses - Abstract
To the Editor: Viruses in the Simbu serogroup are arboviruses that cause abortion, stillbirth, and congenital abnormalities in domestic ruminants. Akabane virus (AKAV), Aino virus (AINV), and Schmallenberg virus are the most studied in this serogroup; Shuni, Sabo, Shamonda, and Sango viruses (1,2) are examined less frequently. Until 2012, only AKAV had been associated with congenital abnormalities in Israel, although AINV had been identified serologically in dairy cow herds with no clinical signs in 2003 (3). Moreover, of 15 brain samples collected during February–October 2012 from adult cows with central nervous system manifestations, 6 were positive for AKAV by PCR. In late December 2014, the Israeli Veterinary Field Services was notified of the appearance of arthrogryposis-hydranencephaly syndrome (1) in 2 herds of sheep in the villages of Yokneam and Sde Ya’akov, respectively; both villages are located in the Izre’el Valley, in Israel’s northern valleys (Technical Appendix Figure 1), where several arboviral infections have occurred in recent decades. From our past experience (3), ≥1 virus of the Simbu serogroup was suspected to have infected the ruminants, probably during August–October 2014. We collected 27 samples of brain, placenta, spleen, lung, and blood (mixed with EDTA to prevent coagulation) from 15 sheep, goats, and cattle. Most samples were from the 2 affected flocks in the northern valley; a few were from ruminants in additional locations: Avadon, near Israel’s border with Lebanon; Ein Hachoresh, near central Israel; and Hura, close to the Negev desert (Technical Appendix Figure 1). Of the 27 samples, 23 (85%) were positive for Shuni virus (SHUV) by PCR (Table). SHUV, which had not been reported in Israel, was isolated from the brain and placenta of 1 malformed lamb (strain 2504/3/14; sample 11 in the Table). Moreover, partial nucleotide sequences of the small, medium, and large DNA segments (580/850, 4,320/4,326, and 285/6,880 bp, respectively) were identified from 3 samples (strains Yokneam 2417/2/14 and 2504/3/14 and Hura 273/14 from samples 2, 11, and 9, respectively, in the Table; Technical Appendix Figure 2). Sequence data obtained by conventional PCR in this study have been deposited into GenBank (accession nos. {"type":"entrez-nucleotide","attrs":{"text":"KP900863","term_id":"940795874","term_text":"KP900863"}}KP900863–5, {"type":"entrez-nucleotide","attrs":{"text":"KP900873","term_id":"940795878","term_text":"KP900873"}}KP900873–5, {"type":"entrez-nucleotide","attrs":{"text":"KP900879","term_id":"940795892","term_text":"KP900879"}}KP900879–80, and {"type":"entrez-nucleotide","attrs":{"text":"KP900884","term_id":"940795926","term_text":"KP900884"}}KP900884). Phylogenetic analysis of the samples showed that they were isolates of SHUV (Technical Appendix Figure 2). Additional SHUV RNA-specific fragments were detected in pathologic samples from kids, lambs, and calves (Table). Full-genome sequences were not performed, although sequencing should be done when possible to determine precise origin of isolates. Table Summary of diagnostic and laboratory findings, animal species, sample materials, and region where samples were collected in the study of Shuni virus infection in ruminants, Israel, 2014–15* For further testing, we inoculated homogenate material from 7 distinct malformations (samples 1, 2, 6, 8, 11, 12, and 15 in the Table) into baby mice; only 1 family of baby mice inoculated intracerebrally with the SHUV isolate (sample 11 in the Table) exhibited characteristic neurologic signs of nervousness. PCR confirmed that SHUV caused the cerebral infections in these mice. The isolate was also suitable for further propagation in the Vero cell line (Table). Our results showed the presence of SHUV in sheep in Israel during the winter of 2014–15 and suggest a northward expansion of SHUV from sub-Saharan Africa. Although SHUV was first isolated in the 1960s (2), its role as a pathogen has been shown only recently in its involvement in encephalitis in horses (4). We isolated SHUV from the pathologic fetal brain of a malformed lamb, an unusual laboratory finding because, although Simbu viruses are readily isolable from vectors or exposed animals during the 3 or 4 days of viremia, they are seldom isolable from pathologic specimens collected for study of congenital malformations. We deduce from the clinical evidence that malformations appear up to 6 months after infection with SHUV and after the virus has been eliminated from the host after immune activity. Thus, isolation of SHUV from malformed brains may indicate strong neurotropism of this putative pathogen. The possibility of its replication in the fetal nervous system should also be considered because an affected fetus that is born alive is likely a reservoir. Indeed, AKAV was identified in the hippocampus (only) of adult lactating cows (data not shown), and similar epidemiologic evidence might result from other Simbu virus infections. A serologic survey conducted in Israel during the 2001–2003 outbreaks of AHS showed reactivity of AINV to serum samples of ruminants in Israel’s southern regions (3). Because AINV and SHUV are known to have a strong serologic cross-reaction, SHUV has likely previously infiltrated Israel. However, whether the seroreactivity results from AINV or SHUV remains unresolved. The emergence and reemergence of arboviruses should interest medical practitioners, particularly epidemiologists. The appearance of exotic viruses in unexpected locations might result in more severe pathology in newly invaded regions than in the original arbovirus-endemic areas. Furthermore, SHUV has been detected in a child with febrile illness (2), a finding that suggests a potential zoonotic problem. Technical Appendix. Map showing locations where Shuni viruses were detected in ruminants in Israel, 2014–15, and phylogenetic trees of Simbu serogroup viruses. Click here to view.(333K, pdf)
- Published
- 2015
49. Neutralizing antibodies against Simbu serogroup viruses in cattle and sheep, Nigeria, 2012–2014.
- Author
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Oluwayelu, Daniel, Wernike, Kerstin, Adebiyi, Adebowale, Cadmus, Simeon, and Beer, Martin
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VIRUSES ,CATTLE ,IMMUNOGLOBULINS ,GENETIC vectors ,BOS - Abstract
Background: Simbu serogroup viruses of the Orthobunyavirus genus (Family Peribunyaviridae) include teratogenic pathogens that cause severe economic losses, abortions, stillbirths and congenital abnormalities in ruminants worldwide. Although they were initially isolated from ruminants and Culicoides biting midges about five decades ago in Nigeria, there is no current information on their prevalence and geographical distribution despite reports of abortions and congenital malformations in the country’s ruminant population. Here, apparently healthy cattle and sheep obtained from eight states in the three major vegetation zones of Nigeria were screened for the presence of specific neutralizing antibodies against Schmallenberg virus (SBV), Simbu virus (SIMV) and Shamonda virus (SHAV). Results: Using a cross-sectional design, 490 cattle and 165 sheep sera were collected between 2012 and 2014 and tested by a commercial SBV ELISA kit which enables the detection of antibodies against various Simbu serogroup viruses. The seropositivity rates for cattle and sheep were 91.2% and 65.4%, respectively. In cattle, there was no association between ELISA seropositivity and vegetation zone. However, the prevalence of anti-Simbu serogroup antibodies was significantly higher in Ebonyi State compared to other states in the rainforest vegetation zone. The seroprevalence was significantly higher in sheep obtained from live animal markets compared to farms (OR = 5.8). Testing of 20 selected ELISA-positive sera by serum neutralisation test showed that all were positive for one or more of SBV, SIMV and SHAV with the highest titres obtained for SHAV. Antibodies to SBV or a closely related virus were detected in the Sudan savannah and rainforest zones, anti-SIMV antibodies were detected only in the rainforest zone, while anti-SHAV antibodies were found in the three vegetation zones. Conclusion: The findings of this study reveal that following the early isolation of Simbu serogroup viruses in Nigeria in the 1960s, members of this virus group are still circulating in the country. Specifically, SBV, SIMV and SHAV or closely related viruses infect cattle and sheep across the three vegetation zones of Nigeria suggesting that insect vector activity is extensive in the country. The exact vegetation zone where the animals became exposed to the viruses could, however, not be determined in this study. [ABSTRACT FROM AUTHOR]
- Published
- 2018
- Full Text
- View/download PDF
50. Venezuelan Equine Encephalitis and Oropouche Virus Infections among Peruvian Army Troops in the Amazon Region of Peru
- Author
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M S Oberste, Cynthia A. Rossi, Jonathan F. Smith, William M. Nelson, C B Cropp, John T. Roehrig, Douglas M. Watts, Curtis G. Hayes, Johnny D. Callahan, M T Wooster, V Lavera, Duane J. Gubler, and N Karabatsos
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Adult ,Male ,Orthobunyavirus ,Adolescent ,viruses ,Antibodies, Viral ,Bunyaviridae Infections ,medicine.disease_cause ,complex mixtures ,Virus ,Disease Outbreaks ,Dengue fever ,Serology ,Encephalitis Virus, Venezuelan Equine ,Mice ,Seroepidemiologic Studies ,Virology ,Peru ,parasitic diseases ,medicine ,Animals ,Humans ,biology ,Oropouche virus ,business.industry ,Antibody titer ,Simbu virus ,Encephalomyelitis, Venezuelan Equine ,biology.organism_classification ,medicine.disease ,Flavivirus ,Infectious Diseases ,Immunoglobulin M ,Immunoglobulin G ,Parasitology ,Viral disease ,business - Abstract
An outbreak of a febrile illness characterized by headache, ocular pain, myalgia, and arthralgia occurred during June 1994 among Peruvian army troops in Northern Peru. On June 14-16, 1994, clinical data and blood samples were obtained from eight soldiers with a febrile illness, and from 26 others who had a history of febrile illness during the past three months. A follow-up blood sample was obtained 107 days later from four of the febrile and seven of the afebrile soldiers. Serum samples were tested for dengue (DEN), Oropouche (ORO), and Venezuelan equine encephalitis (VEE) IgM and IgG antibodies by an enzyme-linked immunosorbent assay (ELISA). Virus isolation was performed by inoculation of newborn mice and Vero cell cultures. Viral isolates were identified by immunofluorescence, ELISA, and nucleotide sequencing. A VEE virus infection was confirmed in three of the eight febrile soldiers, two by virus isolation, and one by serology. Antigenic analysis indicated that one of the virus isolates was similar to VEE subtype I, variety ID, viruses previously isolated in Colombia and Venezuela. Nucleotide sequence data showed that both viral isolates were identical to one another and closely related to VEE ID viruses previously isolated in Peru, Colombia, and Venezuela. Serologic results showed that two of 26 afebrile soldiers had IgM antibody to VEE and four had IgG antibody to VEE; two febrile soldiers had IgG antibody in their first serum samples. Oropouche-specific IgM antibody was detected in one of the eight febrile and five of the afebrile soldiers, and 18 of the 34 soldiers had low titers of ORO IgG antibody titers, which did not meet the diagnostic criteria for confirmed cases. All soldiers were negative for DEN IgM antibody, and 10 had flavivirus IgG antibody that reacted with DEN antigens. These data indicated that VEE ID virus was one of the causes of illness among Peruvians soldiers and that this was the first association of this VEE subtype with human disease in Peru.
- Published
- 1997
- Full Text
- View/download PDF
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