5,642 results on '"SOLID-STATE NMR"'
Search Results
2. Miscibility of amorphous solid dispersions: A rheological and solid-state NMR spectroscopy study
- Author
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Song, Sichen, Xu, Jianchao, Chen, Zhenxuan, Sun, Changquan Calvin, Munson, Eric J., and Siegel, Ronald A.
- Published
- 2025
- Full Text
- View/download PDF
3. From the seaweeds' carrageenan composition to the hybrid carrageenans’ hydrogel elasticity: Identification of a relationship based on the content in iota-carrageenan
- Author
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Hilliou, Loic, Freitas Moraes, Izabel Cristina, and Almeida, Pedro Lúcio
- Published
- 2025
- Full Text
- View/download PDF
4. Unraveling boron-organic template interactions in [B, Al]-ZSM-5 zeolite using solid-state NMR spectroscopy
- Author
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Wang, Yongxiang, Zeng, Shuangqin, Wang, Pengfei, Zheng, Mingji, Huang, Weidong, Chu, Yueying, Feng, Ningdong, Qi, Guodong, Wang, Qiang, Xu, Jun, and Deng, Feng
- Published
- 2024
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5. 3D Lead‐Organoselenide‐Halide Perovskites and their Mixed‐Chalcogenide and Mixed‐Halide Alloys
- Author
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Li, Jiayi, Wang, Yang, Saha, Santanu, Chen, Zhihengyu, Hofmann, Jan, Misleh, Jason, Chapman, Karena W, Reimer, Jeffrey A, Filip, Marina R, and Karunadasa, Hemamala I
- Subjects
Macromolecular and Materials Chemistry ,Chemical Sciences ,Physical Chemistry ,band structure ,halide perovskites ,organochalcogenide ,solid-state NMR ,Organic Chemistry ,Chemical sciences - Abstract
We incorporate Se into the 3D halide perovskite framework using the zwitterionic ligand: SeCYS (+NH3(CH2)2Se-), which occupies both the X- and A+ sites in the prototypical ABX3 perovskite. The new organoselenide-halide perovskites: (SeCYS)PbX2 (X=Cl, Br) expand upon the recently discovered organosulfide-halide perovskites. Single-crystal X-ray diffraction and pair distribution function analysis reveal the average structures of the organoselenide-halide perovskites, whereas the local lead coordination environments and their distributions were probed through solid-state 77Se and 207Pb NMR, complemented by theoretical simulations. Density functional theory calculations illustrate that the band structures of (SeCYS)PbX2 largely resemble those of their S analogs, with similar band dispersion patterns, yet with a considerable band gap decrease. Optical absorbance measurements indeed show band gaps of 2.07 and 1.86 eV for (SeCYS)PbX2 with X=Cl and Br, respectively. We further demonstrate routes to alloying the halides (Cl, Br) and chalcogenides (S, Se) continuously tuning the band gap from 1.86 to 2.31 eV-straddling the ideal range for tandem solar cells or visible-light photocatalysis. The comprehensive description of the average and local structures, and how they can fine-tune the band gap and potential trap states, respectively, establishes the foundation for understanding this new perovskite family, which combines solid-state and organo-main-group chemistry.
- Published
- 2024
6. Unraveling the reaction mechanism of high reversible capacity CuP2/C anode with native oxidation POx component for sodium-ion batteries
- Author
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Chen, Huixin, Zhao, Chen, Yue, Hongjun, Zhong, Guiming, Han, Xiang, Yin, Liang, and Chen, Ding
- Published
- 2025
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7. Deciphering the Conformations of Glutathione Oxidized Peptide: A Comparative NMR Study in Solution and Solid‐State Environments.
- Author
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Senapati, Dillip K., Yarava, Jayasubba Reddy, Ramanathan, K. V., and Raghothama, S.
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PEPTIDES , *REACTIVE oxygen species , *SOLID solutions , *GLUTATHIONE , *HYDROGEN bonding - Abstract
Glutathione (GSH) and its oxidized dimer (GSSG) play an important role in living systems as an antioxidant, balancing the presence of reactive oxygen species (ROS). The central thiol (‐S‐S‐) bond in GSSG can undergo free rotation, providing multiple conformations with respect to the S‐S bridge. The six titratable sites of GSSG, which are influenced by pH variations, affect these conformations in solution, whereas in solids, additionally crystal packing effects come into play. In view of differing reports about the structure of GSSG in literature, we have here conducted an extensive reexamination of its conformations using NMR, and contrasting results have been obtained for solution and solid state. In solution, the existence of more than one antiparallel orientation of the monomer unit with different hydrogen bonding schemes has been indicated by NOE and amide temperature coefficient results. On the other hand, in the solid‐state, a 1H‐1H double‐quantum (DQ) to 13C single‐quantum (SQ) correlation study has confirmed a parallel orientation, consistent with the reported X‐ray crystal structure. Experimentally assigned solid‐state NMR resonances have been validated using GIPAW calculations incorporated in the Quantum ESPRESSO package. [ABSTRACT FROM AUTHOR]
- Published
- 2025
- Full Text
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8. Mechanistic studies of zeolite catalysis via in situ solid-state nuclear magnetic resonance spectroscopy: progress and prospects.
- Author
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Wang, Chao, Hu, Min, Xu, Jun, and Deng, Feng
- Abstract
Zeolites, with their exquisite microporous frameworks and tailorable acidities, serve as ubiquitous catalysts across a diverse spectrum of industrial applications, ranging from petroleum and coal processing to sustainable chemistry and environmental remediation. Optimizing their performance hinges on a thorough understanding of the structure-performance relationship. In situ solid-state nuclear magnetic resonance spectroscopy has emerged as a critical tool, providing unparalleled atomic-level insights into both structure and dynamic aspects of zeolite-catalyzed reactions. Herein, we review recent progress in the development and application of the in situ solid-state nuclear magnetic resonance technique to zeolite catalysis. We first review the in situ nuclear magnetic resonance techniques used in zeolite-catalyzed reaction, including batch-like and continuous-flow reaction modes. The conditions and limitations for these techniques are thoroughly summarized. Subsequently, we review the applications of in situ nuclear magnetic resonance techniques in zeolite-catalyzed reaction, focusing on some important catalytic reactions like methanol-to-hydrocarbons, ethanol dehydration, alkane activation, and beyond. Emphasis is placed on the strategies of specific in situ nuclear magnetic resonance methodologies to tackle critical challenges encountered in these fields, such as probing intermediates and unraveling reaction mechanisms. Additionally, we discuss the burgeoning opportunities and prospective challenges associated with in situ nuclear magnetic resonance studies of zeolite-catalyzed processes. [ABSTRACT FROM AUTHOR]
- Published
- 2025
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9. CO2 Dynamics in a Flexible Metal‐Organic Framework with Gate‐Opening Phenomenon.
- Author
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Xu, Jiabin, Zhang, Wanli, Liu, Jingyan, Zhong, Jun, Sham, Tsun‐Kong, and Huang, Yining
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POROUS materials , *CARBON dioxide - Abstract
As a promising porous material for CO2 adsorption and storage, elastic layer‐structured metal‐organic framework‐11 (ELM‐11) has attracted significant attention owing to its distinct gate‐opening phenomenon. There is a sharp increase in CO2 uptake once reaching the gate‐opening threshold pressure. To better understand this gate‐opening mechanism, we investigated its transition process from the perspective of CO2 dynamics and its interaction with the framework via variable‐temperature 13C solid‐state nuclear magnetic resonance spectroscopy. Our findings revealed that during the gate‐opening process, CO2 is initially strongly adsorbed at one site when the gate only slightly opens, while two distinct types of CO2 molecules exist when the gate fully opens. 11B, 13C, and 19F magic‐angle spinning NMR, in conjunction with in‐situ XANES experiments, were also conducted to probe the location of adsorption sites. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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10. The Ordering and Arrangement of Intercalated Carboxylate Ions in Anion‐Exchangeable Layered Yttrium Hydroxides.
- Author
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Wu, Kefeng and Xu, Jun
- Subjects
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DENSITY functional theory , *SODIUM salts , *YTTRIUM , *ENERGY density , *ANIONS - Abstract
The intercalation chemistry is essential in the application of anion‐exchangeable layered metal hydroxides. However, much of the key information regarding intercalated anions, such as the degree of ordering and arrangement is still not clear or missing to date, due to the difficulty in probing the local environment of anions by routine characterization techniques. Herein, we employed solid‐state NMR (ssNMR) spectroscopy to offer valuable complementary insights into the ordering and arrangement of a series of monocarboxylate anions (RCOO−: R=HO, H, CH3, C2H5, and C3H7) within the interlayer space of two layered yttrium hydroxides (LYH‐Cl and LYH‐Br). The results imply that the two smaller carboxylate anions (R=HO and H) are disordered after intercalation, while the larger carboxylate anions (R=CH3, C2H5, and C3H7) are relatively ordered. We further explored if the intercalated anions are parallel arranged as those in sodium salts or antiparallel arranged as those predicted in the majority of previous reports. We uncovered that the intercalated anions are antiparallel arranged based on the formation energy obtained in density functional theory calculations and ssNMR data. Our results therefore contribute to a deeper and comprehensive understanding of the intercalation chemistry of layered rare earth hydroxides. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
11. Twin Boundaries Contribute to The First Cycle Irreversibility of LiNiO2.
- Author
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Nguyen, H., Silverstein, R., Zaveri, A., Cui, W., Kurzhals, P., Sicolo, S., Bianchini, M., Seidel, K., and Clément, R. J.
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SCANNING transmission electron microscopy , *TWIN boundaries , *NUCLEAR magnetic resonance , *TRANSITION metal oxides , *ENERGY density - Abstract
LiNiO2 remains a target for layered oxide Li‐ion cathode development as it can theoretically deliver the highest energy density of this materials class. In practice, LiNiO2 suffers from poor capacity retention due to electrochemically‐induced structural changes. While the impact of Ni off‐stoichiometry on the electrochemical performance has been extensively studied, that of planar defects present in the as‐synthesized cathode is not well understood. Advanced ex situ and operando structure probes are used to identify and quantify point and planar defects present in as‐synthesized Li1‐yNi1+yO2 cathodes and monitor their evolution during the first cycle. Specifically, a 7Li nuclear magnetic resonance (NMR) signature characteristic of Li environments near twin boundaries is identified; an assignment supported by first‐principles calculations and scanning transmission electron microscopy (STEM) images of twin boundary defects. The NMR results suggest that the concentration of twin boundaries depends on the amount of Ni excess. Moreover, operando magnetometry and ex situ synchrotron X‐ray diffraction and NMR demonstrate that these planar defects impede Li reinsertion into the bulk cathode at reasonable discharge rates and contribute to the first cycle irreversible capacity. These findings provide new design rules for Li1‐yNi1+yO2 cathodes, whereby a reduced concentration of twin boundaries in the pristine material leads to reduced kinetic limitations and improved cathode utilization. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
12. Understanding the Wettability of C1N1 (Sub)Nanopores: Implications for Porous Carbonaceous Electrodes.
- Author
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Lamata‐Bermejo, Irene, Keil, Waldemar, Nolkemper, Karlo, Heske, Julian, Kossmann, Janina, Elgabarty, Hossam, Wortmann, Martin, Chorążewski, Mirosław, Schmidt, Claudia, Kühne, Thomas D., López‐Salas, Nieves, and Odziomek, Mateusz
- Subjects
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CARBON-based materials , *NANOPOROUS materials , *POROUS electrodes , *AQUEOUS electrolytes , *POROSITY - Abstract
Understanding how water interacts with nanopores of carbonaceous electrodes is crucial for energy storage and conversion applications. A high surface area of carbonaceous materials does not necessarily need to translate to a high electrolyte‐solid interface area. Herein, we study the interaction of water with nanoporous C1N1 materials to explain their very low specific capacitance in aqueous electrolytes despite their high surface area. Water was used to probe chemical environments, provided by pores of different sizes, in 1H MAS NMR experiments. We observe that regardless of their high hydrophilicity, only a negligible portion of water can enter the nanopores of C1N1, in contrast to a reference pure carbon material with a similar pore structure. The common paradigm that water easily enters hydrophilic pores does not apply to C1N1 nanopores below a few nanometers. Calorimetric and sorption experiments demonstrated strong water adsorption on the C1N1 surface, which restricts water mobility across the interface and impedes its penetration into the nanopores. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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13. Dual Polyanion Mechanism for Superionic Transport in BH4‐Based Argyrodites.
- Author
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Wang, Pengbo, Liu, Haoyu, Patel, Sawankumar, Roberts, Jason E., Chen, Yudan, Ogbolu, Bright, Francisco, Brian E., and Hu, Yan‐Yan
- Subjects
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DISTRIBUTION (Probability theory) , *NUCLEAR magnetic resonance , *SUPERIONIC conductors , *NEUTRON diffraction , *CHARGE carriers , *NUCLEAR magnetic resonance spectroscopy - Abstract
Polyanion rotations are often linked to cation diffusion, but the study of multiple polyanion systems is scarce due to the complexities in experimentally determining their dynamic interactions. This work focuses on BH4‐based argyrodites, synthesized to achieve a high conductivity of 11 mS cm−1. Advanced tools, including high‐resolution X‐ray diffraction, neutron pair distribution function analysis, and mutinuclear magic‐angle‐spinning nuclear magnetic resonance (NMR) spectroscopy and relaxometry, along with theoretical calculations, are employed to unravel the dynamic intricacies among the dual polyanion lattice and active charge carriers. The findings reveal that the anion sublattice of Li5.07PS4.07(BH4)1.93 affords an even temporal distribution of Li among PS43− and BH4−, suggesting minimal trapping of the charge carriers. Moreover, the NMR relaxometry unveils rapid BH4− rotation on the order of ∼GHz, affecting the slower rotation of neighboring PS43− at ∼100 MHz. The PS43− rotation synchronizes with Li+ motion and drives superionic transport. Thus, the PS43− and BH4− polyanions act as two‐staged dual motors, facilitating rapid Li+ diffusion. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
14. Twin Boundaries Contribute to The First Cycle Irreversibility of LiNiO2.
- Author
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Nguyen, H., Silverstein, R., Zaveri, A., Cui, W., Kurzhals, P., Sicolo, S., Bianchini, M., Seidel, K., and Clément, R. J.
- Subjects
SCANNING transmission electron microscopy ,TWIN boundaries ,NUCLEAR magnetic resonance ,TRANSITION metal oxides ,ENERGY density - Abstract
LiNiO2 remains a target for layered oxide Li‐ion cathode development as it can theoretically deliver the highest energy density of this materials class. In practice, LiNiO2 suffers from poor capacity retention due to electrochemically‐induced structural changes. While the impact of Ni off‐stoichiometry on the electrochemical performance has been extensively studied, that of planar defects present in the as‐synthesized cathode is not well understood. Advanced ex situ and operando structure probes are used to identify and quantify point and planar defects present in as‐synthesized Li1‐yNi1+yO2 cathodes and monitor their evolution during the first cycle. Specifically, a 7Li nuclear magnetic resonance (NMR) signature characteristic of Li environments near twin boundaries is identified; an assignment supported by first‐principles calculations and scanning transmission electron microscopy (STEM) images of twin boundary defects. The NMR results suggest that the concentration of twin boundaries depends on the amount of Ni excess. Moreover, operando magnetometry and ex situ synchrotron X‐ray diffraction and NMR demonstrate that these planar defects impede Li reinsertion into the bulk cathode at reasonable discharge rates and contribute to the first cycle irreversible capacity. These findings provide new design rules for Li1‐yNi1+yO2 cathodes, whereby a reduced concentration of twin boundaries in the pristine material leads to reduced kinetic limitations and improved cathode utilization. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
15. Dynamic nuclear polarization solid-state NMR spectroscopy as a tool to rapidly determine degree of modification in dialcohol cellulose.
- Author
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Karlsson, Hampus, Svenningsson, Leo, Storm, Robin, Chaiyupatham, Poppy, Brolin, Anders, Larsson, Anette, Pinon, Arthur C., Schantz, Staffan, Karlson, Leif, Larsson, Per A., and Evenäs, Lars
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POLARIZATION (Nuclear physics) ,CHEMICAL properties ,CELLULOSE ,BOROHYDRIDE ,THERMOPLASTICS - Abstract
Dialcohol cellulose can be prepared by periodate-mediated oxidation of cellulose followed by reduction with borohydride. The two-step reaction creates a modified cellulose polymer which is ring-opened between the C2 and C3 carbons in the glucose unit. This material has attracted both scientific and commercial interest, due to its potential role in the transition towards a fossil-fuel-free society. In order to become a reliable component in the materials of tomorrow, chemical properties such as degree of modification must be accurately quantified. In this work we describe how solid-state NMR spectroscopy, enhanced by dynamic nuclear polarization (DNP), can be used for this purpose. Our results illustrate that it is possible to obtain high sensitivity enhancements in dialcohol cellulose with the DNP enhanced solid-state NMR technique. Enhancements above a factor of fifty, on a 400 MHz/263 GHz DNP system in the presence of 12 mM AMUPol radical were achieved. This allows us to quantify the degree of modification in dialcohol cellulose samples in time spans as short as 20 min using DNP enhanced multiple-contact cross polarization experiments. We also exemplify how DNP enhanced,
13 C-13 C dipolar recoupling experiments can be used for the same purpose and for studying chemical shift correlations in dialcohol cellulose. [ABSTRACT FROM AUTHOR]- Published
- 2024
- Full Text
- View/download PDF
16. Manual and automatic assignment of two different Aβ40 amyloid fibril polymorphs using MAS solid-state NMR spectroscopy.
- Author
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Rodina, Natalia, Sarkar, Riddhiman, Tsakalos, Dimitrios, Suladze, Saba, Niu, Zheng, and Reif, Bernd
- Abstract
Amyloid fibrils from Alzheimer's amyloid-beta peptides (Aβ) are found to be polymorphic. So far, 14 Aβ40 fibril structures have been determined. The mechanism of why one particular protein sequence adopts so many different three-dimensional structures is yet not understood. In this work, we describe the assignment of the NMR chemical shifts of two Alzheimer's disease fibril polymorphs, P1 and P2, which are formed by the amyloid-beta peptide Aβ40. The assignment is based on
13 C-detected 3D NCACX and NCOCX experiments MAS solid-state NMR experiments. The fibril samples are prepared using an extensive seeding protocol in the absence and presence of the small heat shock protein αB-crystallin. In addition to manual assignments, we obtain chemical shift assignments using the automation software ARTINA. We present an analysis of the secondary chemical shifts and a discussion on the differences between the manual and automated assignment strategies. [ABSTRACT FROM AUTHOR]- Published
- 2024
- Full Text
- View/download PDF
17. Solid-state NMR assignment of α-synuclein polymorph prepared from helical intermediate.
- Author
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Ahlawat, Sahil, Mehra, Surabhi, Gowda, Chandrakala M., Maji, Samir K, and Agarwal, Vipin
- Abstract
Synucleinopathies are neurodegenerative diseases characterized by the accumulation of α-synuclein protein aggregates in the neurons and glial cells. Both ex vivo and in vitro α-synuclein fibrils tend to show polymorphism. Polymorphism results in structure variations among fibrils originating from a single polypeptide/protein. The polymorphs usually have different biophysical, biochemical and pathogenic properties. The various pathologies of a single disease might be associated with distinct polymorphs. Similarly, in the case of different synucleinopathies, each condition might be associated with a different polymorph. Fibril formation is a nucleation-dependent process involving the formation of transient and heterogeneous intermediates from monomers. Polymorphs are believed to arise from heterogeneous oligomer populations because of distinct selection mechanisms in different conditions. To test this hypothesis, we isolated and incubated different intermediates during in vitro fibrillization of α-synuclein to form different polymorphs. Here, we report
13 C and15 N chemical shifts and the secondary structure of fibrils prepared from the helical intermediate using solid-state nuclear magnetic spectroscopy. [ABSTRACT FROM AUTHOR]- Published
- 2024
- Full Text
- View/download PDF
18. Solid‐State NMR of Heterogeneous Catalysts.
- Author
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Haro Mares, Nadia, Logrado, Millena, Kergassner, Jan, Zhang, Bingyu, Gutmann, Torsten, and Buntkowsky, Gerd
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POLARIZATION (Nuclear physics) , *HETEROGENEOUS catalysis , *HETEROGENEOUS catalysts , *NUCLEAR magnetic resonance , *COORDINATION polymers , *SILICA gel , *CHEMICAL shift (Nuclear magnetic resonance) - Abstract
Recent advances in solid‐state nuclear magnetic resonance (NMR) spectroscopy, combined with dynamic nuclear polarization (DNP), quantum chemical DFT calculations, and gas‐phase NMR spectroscopy investigating the structure and reactivity of heterogeneous catalysts are reviewed. The investigated catalysts range from classical mononuclear catalysts, like immobilized derivates of Wilkinson's catalysts over binuclear catalysts such as the dirhodium paddlewheel catalyst to catalytic nanoparticles, employing various support materials, such as mesoporous silica gels, coordination polymers, and biomaterials such as cellulose. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
19. A novel approach for quantitative determination of lignin content in tobacco via multiCP/MAS NMR spectroscopy.
- Author
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Wang, Ying, Huang, Lan, Tian, Zhenfeng, Ge, Shaolin, Zhang, Bing, Zhang, Zhao, Chen, Mingxi, Xu, Bingxia, Hao, Jinghang, and Yang, Jun
- Subjects
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SMOKING , *ANALYTICAL chemistry , *SAFETY factor in engineering , *TOBACCO analysis , *LIGNINS - Abstract
As the main structural component of tobacco cell wall, lignin content is an important factor affecting the safety of tobacco smoking. However, it is time‐consuming to quantify lignin by conventional wet chemical analysis methods. In this work, a 13C multiCP/MAS NMR spectral analysis method for tobacco lignin was established. The multiCP/MAS NMR sequence was optimized for tobacco lignin. The optimized nuclear magnetic sequence parameters were 9 CP cycles of 1.5 ms, repolarization time of 0.7 s, and a total acquisition time of 130 min. Subsequently, TMSP was used as the internal standard substance to establish the working curve, and the correlation coefficient was 0.9946. The relative standard deviation (RSD, n = 5) was 3.26%. This method was applied to the determination of lignin content in different types of tobacco samples. The relative error in the determination of lignin content by this method did not exceed 4.46% compared to the results of the chemical method. The results showed that the 13C multiCP/MAS NMR spectral analysis method had the advantages of accuracy and rapidity, which provided a new technical means for the quantitative study of tobacco cell wall substances. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
20. Recent advances in solid‐state nuclear magnetic resonance studies on membrane fusion proteins.
- Author
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Zheng, Lifen and Wang, Shenlin
- Subjects
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MEMBRANE fusion , *MEMBRANE proteins , *CHIMERIC proteins , *NUCLEAR magnetic resonance , *BILAYER lipid membranes - Abstract
Membrane fusion is an essential biological process that merges two separate lipid bilayers into a whole one. Membrane fusion proteins facilitate this process by bringing lipid bilayers in close proximity to reduce the repulsive energy between membranes. Along with their interactions with membranes, the structures and dynamics of membrane fusion proteins are key to elucidating the mechanisms of membrane fusion. Solid‐state NMR (SSNMR) spectroscopy has unique advantages in determining the structures and dynamics of membrane fusion proteins in their membrane‐bound states. It has been extensively applied to reveal conformational changes in intermediate states of viral membrane fusion proteins and to characterize the critical lipid–membrane interactions that drive the fusion process. In this review, we summarize recent advancements in SSNMR techniques for studying membrane fusion proteins and their applications in elucidating the mechanisms of membrane fusion. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
21. Solid‐State NMR Exploration of Factors for Enhancement of Hole Mobility by Introduction of Poly(styrene) Into Poly(3‐hexylthiophene).
- Author
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Takahashi, Riku, Tomita, Eri, Mukadeyama, Shinpei, Kanehashi, Shinji, and Ogino, Kenji
- Subjects
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MAGIC angle spinning , *HOLE mobility , *GENOME editing , *STYRENE , *CRYSTALLINITY - Abstract
Solid‐state cross‐polarization magic angle spinning (CPMAS) 13C NMR is employed to examine the morphological factors that contribute to the enhanced hole mobility observed in poly(3‐hexylthiophene) (P3HT) by the introduction of electrically inert poly(styrene) (PSt). Chain mobilities of crystalline and amorphous phases in the P3HT domain are evaluated utilizing T1C (13C spin‐lattice relaxation time in the laboratory frame). The crystallinity of P3HT component is estimated based on the spectral editing method through T1ρH (1H spin‐lattice relaxation time in the rotating frame) filtered CPMAS. Moreover, the miscibility of P3HT crystalline and P3HT amorphous domains is estimated. These results suggest the formation of the rigid amorphous (short‐range ordered amorphous) in a block copolymer (P3HT‐block‐PSt). An increase in the proportion of the crystallite and proximate presence of each crystallite in a blend sample of P3HT with PSt (P3HT‐blend‐PSt) are also indicated. Enhanced mobility is attributed to the larger portion of rigid amorphous domain for P3HT‐block‐PSt, and to higher crystalline content for P3HT‐blend‐PSt. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
22. Analysis of the structure and interactions of the SARS-CoV-2 ORF7b accessory protein.
- Author
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Minh-Ha Nguyen, Palfy, Gyula, Fogeron, Marie-Laure, Pedrosa, Martí Ninot, Zehnder, Johannes, Rimal, Vaclav, Callon, Morgane, Lecoq, Lauriane, Barnes, Alexander, Meier, Beat H., and Böckmann, Anja
- Subjects
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LEUCINE zippers , *MEMBRANE proteins , *TRANSMEMBRANE domains , *PHOSPHOLAMBAN , *IMMUNOREGULATION - Abstract
SARS-CoV- 2 carries a sizeable number of proteins that are accessory to replication but may be essential for virus-host interactions and modulation of the host immune response. Here, we investigated the structure and interactions of the largely unknown ORF7b, a small membranous accessory membrane protein of SARS-CoV- 2. We show that structural predictions indicate a transmembrane (TM) leucine zipper for ORF7b, and experimentally confirm the predominantly a-helical secondary structure within a phospholipid membrane mimetic by solid-state NMR. We also show that ORF7b forms heterogeneous higher-order multimers. We determined ORF7b interactions with cellular TM leucine zipper proteins using both biochemical and NMR approaches, providing evidence for ORF7b interaction with the TM domains of E-cadherin, as well as phospholamban. Our results place ORF7b as a hypothetical interferer in cellular processes that utilize leucine zipper motifs in transmembrane multimerization domains. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
23. Resolving Structures of Paramagnetic Systems in Chemistry and Materials Science by Solid‐State NMR: The Revolving Power of Ultra‐Fast MAS.
- Author
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Koppe, Jonas, Sanders, Kevin J., Robinson, Thomas C., Lejeune, Arthur L., Proriol, David, Wegner, Sebastian, Purea, Armin, Engelke, Frank, Clément, Raphaële J., Grey, Clare P., Pell, Andrew J., and Pintacuda, Guido
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PARAMAGNETIC materials , *MATERIALS science , *MATERIALS handling , *ELECTRONIC structure , *ROTORS - Abstract
Ultra‐fast magic‐angle spinning (100+kHz) has revolutionized solid‐state NMR of biomolecular systems but has so far failed to gain ground for the analysis of paramagnetic organic and inorganic powders, despite the potential rewards from substantially improved spectral resolution. The principal blockages are that the smaller fast‐spinning rotors present significant barriers for sample preparation, particularly for air/moisture‐sensitive systems, and are associated with low sensitivity from the reduced sample volumes. Here, we demonstrate that the sensitivity penalty is less severe than expected for highly paramagnetic solids and is more than offset by the associated improved resolution. While previous approaches employing slower MAS are often unsuccessful in providing sufficient resolution, we show that ultra‐fast 100+kHz MAS allows site‐specific assignments of all resonances from complex paramagnetic solids. Combined with more reliable rotor materials and handling methods, this opens the way to the routine characterization of geometry and electronic structures of functional paramagnetic systems in chemistry, including catalysts and battery materials. We benchmark this approach on a hygroscopic luminescent Tb3+ complex, an air‐sensitive homogeneous high‐spin Fe2+ catalyst, and a series of mixed Fe2+/Mn2+/Mg2+ olivine‐type cathode materials. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
24. Seeing Double: The Persistent Dimer‐of‐Dimers Structure of Drug Resistant Influenza A M2.
- Author
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Stampolaki, Marianna, Cherian Varkey, Abel, Nimerovsky, Evgeny, Leonov, Andrei, Becker, Stefan, and Andreas, Loren B.
- Abstract
The currently circulating S31N variant of the M2 proton channel of influenza A is resistant to antiviral drugs. Recently, there has been a growing concern regarding the impact of the lipid environment on the structural features of the S31N variant. The native symmetry of the M2 tetramer remains controversial. Here we show that S31N M2 persists in a dimer‐of‐dimers structure in different lipid preparations independent of the amount of solvating lipids up to at least 180 lipids per tetramer. NMR spectra clearly detect the characteristic resonances of the dimer‐of‐dimers of M2 (residues 18–60 or 18–62) reconstituted in lipids. NMR‐based distance measurements indicate that two isoleucine residues with upfield shifted alpha carbon resonances, typical of extended conformations, are compatible with a particular side‐chain rotameric state and helical backbone geometry. These chemical shifts are therefore compatible with the expected native transmembrane helical fold. Symmetry breaking at the pH sensing H37 residues, detected via peak doubling, is a stable feature of S31N M2 based on the reference strain Udorn/1972(H3N2). By contrast, the spectrum is dramatically altered for Columbia/2014/(H3N2) M2, which differs in sequence in the amphipathic helices. This highlights an allosteric coupling between the amphipathic helices and the pH sensing residues. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
25. Surface Coordination Chemistry of Graphitic Carbon Nitride from Ag Molecular Probes.
- Author
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Amanullah, Sk, Cao, Weicheng, Brack, Enzo, Plodinec, Milivoj, and Copéret, Christophe
- Abstract
Graphitic carbon nitride (g‐C3N4) has gained significant attention for its catalytic properties, especially in the development of Single Atom Catalysts (SACs). However, the surface chemistry underlying the formation of these isolated metal sites remains poorly understood. In this study we employ Surface OrganoMetallic Chemistry (SOMC) together with advanced microscopic and spectroscopic techniques for an in‐depth analysis of functionalized g‐C3N4 materials, where tailored organosilver probe molecules are used to monitor surface processes and characterize resulting surface species. A multi‐technique approach –
including high‐angle annular dark‐field scanning transmission electron microscopy (HAADF‐STEM) ,X‐ray absorption spectroscopy (XAS), and multinuclear solid‐state Nuclear Magnetic Resonance spectroscopy (ssNMR), coupled with density functional theory (DFT) calculations – identifies three primary surface species in Ag‐functionalized g‐C3N4:bis ‐NHC‐Ag+, dispersed Ag+ sites, and physisorbed molecular precursor. These findings highlight a dynamic grafting process and provide insights into the surface coordination chemistry of functionalized g‐C3N4 materials. [ABSTRACT FROM AUTHOR]- Published
- 2024
- Full Text
- View/download PDF
26. HRMAS NMR for Studying Solvent‐Induced Mobility of Polymer Chains and Metallocene Migration Into Low‐Density Polyethylene (LDPE)
- Author
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Hoefler, John C., Kimball, Maxwell R., and Blümel, Janet
- Subjects
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MAGIC angle spinning , *NUCLEAR magnetic resonance , *NMR spectrometers , *POLYMER structure , *SCANNING electron microscopy , *NUCLEAR magnetic resonance spectroscopy - Abstract
ABSTRACT HRMAS (high‐resolution magic angle spinning) nuclear magnetic resonance (NMR) spectroscopy of low‐density polyethylene (LDPE) affords 1H and 13C NMR spectra with superior resolution. For acquiring HRMAS NMR spectra, the polymer is first swollen with representative organic solvents. Then, the samples are measured with a conventional solid‐state NMR spectrometer in the wideline mode or at the low spinning speed of 2 kHz. Anisotropic interactions like CSA (chemical shift anisotropy) and dipolar interactions are reduced due to the additional mobility of the polymer chains in the presence of the solvent within the polymer network. The combined effect of this mobility and MAS leads to signals with substantially reduced halfwidths as compared to classic MAS of the dry polymer. With HRMAS, all signals of the polymer become visible, and the spectra can be used for a quick and easy assessment of the polymer swelling behavior in diverse solvents. Being able to characterize polymers on the molecular level, and identifying the solvents that penetrate the polymer network best, enables the study of post‐synthesis modifications of the polymers. It is demonstrated by paramagnetic HRMAS that the metallocene nickelocene (Cp2Ni) penetrates the LDPE network along with the solvent and is homogeneously dispersed in the polymer. SEM images prove that the structure of the polymer is not altered by the presence of a solvent and Cp2Ni. The impact of the paramagnetic Cp2Ni on the 1H signal halfwidth and T1 time of LDPE is studied. HRMAS allows a quick assessment of metal complexes regarding their ability to penetrate the LDPE network and therefore supports future studies of catalytic polymer degradation. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
27. Electronic Structures of Late versus Early Transition Metal Imido Complexes from 15N‐NMR Signatures.
- Author
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Kakiuchi, Yuya and Copéret, Christophe
- Subjects
- *
TRANSITION metal complexes , *TRANSITION metals , *ORGANOMETALLIC chemistry , *ELECTRONIC structure , *NUCLEAR magnetic resonance spectroscopy - Abstract
Imido ligand is a ubiquitous motif in organometallic chemistry, serving roles spanning from ancillary ligands to reactive sites. The nature of M=N bond is highly depended on the metal centres and their d‐electron configuration, with late transition metal (TM) imido complexes exhibiting contrasting features when compared to their early TM analogues. Envisioning to uncover general electronic descriptor for the nature of imido ligands, we computationally investigate the solid‐state 15N NMR signatures of late TM imido complexes with various central metals, geometries and d‐electron counts, and compare them against these of the corresponding early TM systems. The spectroscopic signatures are mostly driven by the presence of filled, π‐symmetry orbitals in late TM imido complexes, suggesting the development of high‐lying π(M=N) and low‐lying σ/σ*(M=N) orbitals. This contrasts with what is observed for the reported early TM systems, for which high‐lying σ‐type orbitals determine the NMR signature. Noteworthily, Ni‐ and Pd‐imido complexes with formal d10 configurations exhibit highly asymmetric nitrogen‐15 NMR signature with extremely deshielded principal components, because of the presence of filled, high‐lying antibonding π*(M=N) orbitals, consistent with their high reactivity. The sensitive response of 15N NMR signature to the nature of metal sites further highlights that chemical shift is a useful reactivity descriptor. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
28. Improved solid-state 13C and 15N NMR reveals fundamental compositional divide between refractory dissolved organic carbon and nitrogen in the sea.
- Author
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Ianiri, H.L., Mason, H.E., Broek, T.A.B., and McCarthy, M.D.
- Subjects
- *
ORGANIC compound content of seawater , *MAGIC angle spinning , *DISSOLVED organic matter , *NUCLEAR magnetic resonance , *BREWSTER'S angle - Abstract
Marine dissolved organic matter (DOM) is one of the largest reservoirs of organic carbon and nitrogen in the world. Yet, despite its global importance, most DOM remains molecularly uncharacterized. Solid-state nuclear magnetic resonance (NMR) spectroscopy of isolated DOM fractions represents one of the most powerful techniques to understand overall structural composition. However, it is well known that standard cross polarization magic angle spinning (CP/MAS) NMR, the technique used for almost all past solid-state NMR studies of DOM, is at best "semi-quantitative," and underestimates fully substituted NMR active nuclei. Additionally, almost all past solid-state NMR work analyzed high molecular weight (HMW) material isolated by ultrafiltration, which is now understood to represent mostly 14C-young, "semi-labile" compounds. In contrast, there is far less information regarding the composition of older, low molecular weight (LMW) DOM, which represents the vast majority of the ocean's accumulated refractory DOM pool. Here, we applied 13C and 15N solid-state multiCP/MAS NMR, improved NMR methods optimized to more quantitatively resolve fully substituted NMR nuclei, to both HMW and LMW DOM isolated from the surface and deep North Pacific Subtropical Gyre. These methods confirm past work indicating most nitrogen containing HMW DOM as amide compounds, but also demonstrate a modest heterocyclic N component not previously identified. In contrast, we found that LMW DON is almost entirely aromatic heterocyclic N, consistent with the hypothesis that heterocyclic N structures may be largely responsible for the accumulation of the ocean's refractory DON pool. Surprisingly, however, we find DOC aromatic functionalities still represent only a very minor portion of either the HMW or the LMW refractory carbon pools, in marked contrast to refractory DON composition. Together, these more quantitative solid-state NMR techniques likely represent the most accurate picture of DON and DOC functional and compound-class makeup to date, and so have broad implications for our understanding of marine DOM structure and cycling. Specifically, our new data suggests that while chemical composition likely acts as a key control on DOM lability, the most refractory components of DOC and DON have very different compositions, sources, and cycling, supporting the idea that DOC and DON cycling in the ocean may be largely decoupled. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
29. Synthesis methodology of pure N–A–S–H gels with wide range of Si/Al ratios at ambient temperature.
- Author
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Shamo, Eashow, Charpentier, Thibault, Moskura, Mélanie, Chartier, Alain, Miserque, Frédéric, and Rousselet, Angélique
- Subjects
- *
MAGIC angle spinning , *NUCLEAR magnetic resonance , *PHOTOELECTRON spectroscopy , *ELECTRON spectroscopy , *THERMOGRAVIMETRY - Abstract
This study presents the development of a synthesis route for sodium aluminosilicate hydrate (N–A–S–H) gels with various Si/Al ratios carried out at ambient temperature. The synthesis is based on a simple "sol–gel" method, where commercial reactants are used to provide highly reactive Si and Al sources. Comprehensive characterization, including scanning electron microscope‐energy‐dispersive spectroscopy (SEM‐EDS), gas pycnometry, inductively coupled plasma (ICP), X‐ray photoelectron spectroscopy (XPS), thermogravimetric analysis (TGA), X‐ray diffraction (XRD), and magic angle spinning (MAS) nuclear magnetic resonance (NMR) (27Al, 23Na, 29Si, and 1H), is employed to verify the morphology, density, chemical composition, long‐range order, and local structure of the gels. Our results show that the synthesized gels are pure, amorphous, and homogeneous with Si/Al final ratio ranging from 1.22 to 2.23. Structural analysis of the gels indicates the synthesis of compounds with high degree of geopolymerization, which are representative of N–A–S–H gel formed in sodium‐based geopolymers. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
30. Exploring the structure and dynamics of soft and hard cuticle of Bombyx mori using solid-state NMR techniques
- Author
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Lekhan Lodhi, Janak Dulari Ahi, Neelima Gupta, Bijay Laxmi Pradhan, Prince Sen, Manasi Ghosh, and Krishna Kishor Dey
- Subjects
Larval and adult cuticles of Bombyx mori ,Exoskeleton ,XRD-measurements ,Solid-state NMR ,Medicine ,Science - Abstract
Abstract This study conducts a comprehensive analysis and comparison of Bombyx mori cuticles across different developmental stages, ranging from larval to adult, utilizing advanced solid-state NMR techniques. The primary objective is to elucidate the underlying reasons for the contrasting hardness of adult cuticles and softness of larval cuticles. Notably, PXRD analysis reveals a prominent broad peak at 19.34°, indicating the predominantly amorphous nature of both larval and adult cuticles. Analysis of 13C CP-MAS SSNMR spectra highlights an elevated proportion of phenoxy carbon in adult cuticles (6.77%) compared to larval cuticles (1.24%). Furthermore, a distinctive resonance line at 144 ppm is exclusively observed in adult cuticles, due to catechols, suggesting potential biochemical pathway variations during development. Significant variations in the primary components of 13C chemical shift anisotropy (CSA) tensors for aliphatic carbons of amino acids, catechols, and lipids between adult and larval cuticles indicate alterations in electronic environments. Additionally, the shorter spin–lattice relaxation time of carbon nuclei in larval cuticles compared to adult cuticles implies slower motional dynamics with enhanced degree of sclerotization in adults. By investigating the internal structure and dynamics of cuticles, this research not only contributes to biomimetic material development but also enhances our understanding of structural changes across different developmental stages of B. mori.
- Published
- 2024
- Full Text
- View/download PDF
31. Molecular Recognition in Mechanochemistry: Insights from Solid‐State NMR Spectroscopy.
- Author
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Quaranta, Calogero, d'Anciães Almeida Silva, Igor, Moos, Sven, Bartalucci, Ettore, Hendrickx, Leeroy, Fahl, Benjamin M. D., Pasqualini, Claudia, Puccetti, Francesco, Zobel, Mirijam, Bolm, Carsten, and Wiegand, Thomas
- Subjects
- *
NUCLEAR magnetic resonance , *MOLECULAR recognition , *LACTIC acid , *TEST systems , *SERINE - Abstract
Molecular‐recognition events are highly relevant in biology and chemistry. In the present study, we investigated such processes in the solid state under mechanochemical conditions using the formation of racemic phases upon reacting enantiopure entities as example. As test systems, α‐(trifluoromethyl)lactic acid (TFLA) and the amino acids serine and alanine were used. The effects of ball‐milling and resonant acoustic mixing (RAM) on the formation of racemic phases were probed by using solid‐state Nuclear Magnetic Resonance (NMR) spectroscopy. In a mixer mill, a highly efficient and fast racemic phase formation occurred for both TFLA and the two amino acids. RAM led to the racemic phase for TFLA also, and this process was facilitated upon employing pre‐milled enantiopure entities. In contrast, under comparable conditions RAM did not result in the formation of racemic phases for serine and alanine. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
32. Electrostatic Surface Potentials and Chalcogen‐Bonding Motifs of Substituted 2,1,3‐Benzoselenadiazoles Probed via 77Se Solid‐State NMR Spectroscopy.
- Author
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Georges, Tristan, Ovens, Jeffrey S., and Bryce, David L.
- Subjects
- *
ELECTRIC potential , *SURFACE potential , *NUCLEAR magnetic resonance spectroscopy , *ANALYTICAL chemistry , *METHYL groups , *CHEMICAL shift (Nuclear magnetic resonance) - Abstract
Chalcogen bonds (ChB) are moderately strong, directional, and specific non‐covalent interactions that have garnered substantial interest over the last decades. Specifically, the presence of two σ‐holes offers great potential for crystal engineering, catalysis, biochemistry, and molecular sensing. However, ChB applications are currently hampered by a lack of methods to characterize and control chalcogen bonds. Here, we report on the influence of various substituents (halogens, cyano, and methyl groups) on the observed self‐complementary ChB networks of 2,1,3‐benzoselenadiazoles. From molecular electrostatic potential calculations, we show that the electrostatic surface potentials (ESP) of the σ‐holes on selenium are largely influenced by the electron‐withdrawing character of these substituents. Structural analyses via X‐ray diffraction reveal a variety of ChB geometries and binding modes that are rationalized via the computed ESP maps, although the structure of 5,6‐dimethyl‐2,1,3‐benzoselenadiazole also demonstrates the influence of steric interactions. 77Se solid‐state magic‐angle spinning NMR spectroscopy, in particular the analysis of the selenium chemical shift tensors, is found to be an effective probe able to characterize both structural and electrostatic features of these self‐complementary ChB systems. We find a positive correlation between the value of the ESP maxima at the σ‐holes and the experimentally measured 77Se isotropic chemical shift, while the skew of the chemical shift tensor is established as a metric which is reflective of the ChB binding motif. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
33. Sedimentation of large, soluble proteins up to 140 kDa for 1H-detected MAS NMR and 13C DNP NMR – practical aspects.
- Author
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Bell, Dallas, Lindemann, Florian, Gerland, Lisa, Aucharova, Hanna, Klein, Alexander, Friedrich, Daniel, Hiller, Matthias, Grohe, Kristof, Meier, Tobias, van Rossum, Barth, Diehl, Anne, Hughes, Jon, Mueller, Leonard J., Linser, Rasmus, Miller, Anne-Frances, and Oschkinat, Hartmut
- Subjects
POLARIZATION (Nuclear physics) ,PYROCOCCUS furiosus ,SALMONELLA typhimurium ,CHARGE exchange ,MAGIC angle spinning - Abstract
Solution NMR is typically applied to biological systems with molecular weights < 40 kDa whereas magic-angle-spinning (MAS) solid-state NMR traditionally targets very large, oligomeric proteins and complexes exceeding 500 kDa in mass, including fibrils and crystalline protein preparations. Here, we propose that the gap between these size regimes can be filled by the approach presented that enables investigation of large, soluble and fully protonated proteins in the range of 40–140 kDa. As a key step, ultracentrifugation produces a highly concentrated, gel-like state, resembling a dense phase in spontaneous liquid-liquid phase separation (LLPS). By means of three examples, a Sulfolobus acidocaldarius bifurcating electron transfer flavoprotein (SaETF), tryptophan synthases from Salmonella typhimurium (StTS) and their dimeric β-subunits from Pyrococcus furiosus (PfTrpB), we show that such samples yield well-resolved proton-detected 2D and 3D NMR spectra at 100 kHz MAS without heterogeneous broadening, similar to diluted liquids. Herein, we provide practical guidance on centrifugation conditions and tools, sample behavior, and line widths expected. We demonstrate that the observed chemical shifts correspond to those obtained from µM/low mM solutions or crystalline samples, indicating structural integrity. Nitrogen line widths as low as 20–30 Hz are observed. The presented approach is advantageous for proteins or nucleic acids that cannot be deuterated due to the expression system used, or where relevant protons cannot be re-incorporated after expression in deuterated medium, and it circumvents crystallization. Importantly, it allows the use of low-glycerol buffers in dynamic nuclear polarization (DNP) NMR of proteins as demonstrated with the cyanobacterial phytochrome Cph1. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
34. Polymer Composite Electrolytes Membrane Consisted of Polyacrylonitrile Nanofibers Containing Lithium Salts: Improved Ion Conductive Characteristics and All‐Solid‐State Battery Performance.
- Author
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Matsuda, Yu, Nakazawa, Shun, Tanaka, Manabu, and Kawakami, Hiroyoshi
- Subjects
- *
COMPOSITE membranes (Chemistry) , *POLYELECTROLYTES , *POLYMERIC membranes , *ETHYLENE oxide , *POLYACRYLONITRILES , *NANOFIBERS , *POLAR bear - Abstract
Polymer electrolyte membranes with superior lithium‐ion (Li+) conductivity and sufficient electrochemical stability are desired for all‐solid‐state lithium‐ion batteries (ASS‐LIBs). This paper reports novel polymer composite membranes consisting of polyacrylonitrile (PAN) nanofibers (Nfs) containing lithium salts. It is first revealed that the lithium salt addition increases polar surface groups on the PAN nanofibers. Subsequently, the lithium salts‐containing PAN nanofiber (PAN/Li Nf) composite membrane affects the matrix poly(ethylene oxide) (PEO)/lithium bis(trifluoromethyl sulfonylimide) (LiTFSI) electrolyte to increase the numbers of Li+ with high mobility. Consequently, the PAN/Li Nf composite membrane shows relatively good ion conductivity (
σ = 9.0 × 10−5 S cm−1) and a considerably large Li+ transference number (t Li+ = 0.41) at 60 °C, compared to the PEO/LiTFSI membrane without nanofibers. The 6Li solid‐state NMR study supports that the PAN/Li Nf bearing abundant polar nitrile groups at their surface enhances Li+ diffusion in the PEO‐based electrolyte membranes. The galvanostatic constant current cycling tests reveal that the PAN/Li Nf composite membrane possesses good electrochemical and mechanical stabilities. The ASS‐LIB consisting of the PAN/Li Nf composite membrane shows significantly improved charge and discharge cycling performances, promising future all‐solid‐state batteries. [ABSTRACT FROM AUTHOR]- Published
- 2024
- Full Text
- View/download PDF
35. Aggregation Mechanisms and Molecular Structures of Amyloid‐β in Alzheimer's Disease.
- Author
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Niu, Zheng, Gui, Xinrui, Feng, Shuang, and Reif, Bernd
- Subjects
- *
PHASE transitions , *MOLECULAR structure , *ALZHEIMER'S disease , *STRESS granules , *NUCLEAR magnetic resonance - Abstract
Amyloid plaques are a major pathological hallmark involved in Alzheimer's disease and consist of deposits of the amyloid‐β peptide (Aβ). The aggregation process of Aβ is highly complex, which leads to polymorphous aggregates with different structures. In addition to aberrant aggregation, Aβ oligomers can undergo liquid‐liquid phase separation (LLPS) and form dynamic condensates. It has been hypothesized that these amyloid liquid droplets affect and modulate amyloid fibril formation. In this review, we briefly introduce the relationship between stress granules and amyloid protein aggregation that is associated with neurodegenerative diseases. Then we highlight the regulatory role of LLPS in Aβ aggregation and discuss the potential relationship between Aβ phase transition and aggregation. Furthermore, we summarize the current structures of Aβ oligomers and amyloid fibrils, which have been determined using nuclear magnetic resonance (NMR) and cryo‐electron microscopy (cryo‐EM). The structural variations of Aβ aggregates provide an explanation for the different levels of toxicity, shed light on the aggregation mechanism and may pave the way towards structure‐based drug design for both clinical diagnosis and treatment. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
36. Correlating local structure and migration dynamics in Na/Li dual ion conductor Na5YSi4O12.
- Author
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Chenjie Lou, Jie Liu, Xuan Sun, Wenda Zhang, Ligang Xu, Huajie Luo, Yongjin Chen, Xiang Gao, Xiaojun Kuang, Jipeng Fu, Jun Xu, Lei Su, Jiwei Ma, and Mingxue Tang
- Subjects
- *
IONIC conductivity , *DIFFUSION coefficients , *DENSITY functional theory , *ION migration & velocity , *ACTIVATION energy - Abstract
Na5YSi4O12 (NYSO) is demonstrated as a promising electrolyte with high ionic conductivity and low activation energy for practical use in solid Na-ion batteries. Solid-state NMR was employed to identify the six types of coordination of Na+ ions and migration pathway, which is vital to master working mechanism and enhance performance. The assignment of each sodium site is clearly determined from high-quality 23Na NMR spectra by the aid of Density Functional Theory calculation. Well-resolved 23Na exchangespectroscopy and electrochemical tracer exchange spectra provide the first experimental evidence to show the existence of ionic exchange between sodium at Na5 and Na6 sites, revealing that Na transport route is possibly along three-dimensional chain of open channel-Na4-open channel. Variable-temperature NMR relaxometry is developed to evaluate Na jump rates and self-diffusion coefficient to probe the sodium-ion dynamics in NYSO. Furthermore, NYSO works well as a dual ion conductor in Na and Li metal batteries with Na3V2(PO4)3 and LiFePO4 as cathodes, respectively. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
37. Correlating local structure and migration dynamics in Na/Li dual ion conductor Na5YSi4O12.
- Author
-
Chenjie Lou, Jie Liu, Xuan Sun, Wenda Zhang, Ligang Xu, Huajie Luo, Yongjin Chen, Xiang Gao, Xiaojun Kuang, Jipeng Fu, Jun Xu, Lei Su, Jiwei Ma, and Mingxue Tang
- Subjects
IONIC conductivity ,DIFFUSION coefficients ,DENSITY functional theory ,ION migration & velocity ,ACTIVATION energy - Abstract
Na
5 YSi4 O12 (NYSO) is demonstrated as a promising electrolyte with high ionic conductivity and low activation energy for practical use in solid Na-ion batteries. Solid-state NMR was employed to identify the six types of coordination of Na+ ions and migration pathway, which is vital to master working mechanism and enhance performance. The assignment of each sodium site is clearly determined from high-quality23 Na NMR spectra by the aid of Density Functional Theory calculation. Well-resolved23 Na exchangespectroscopy and electrochemical tracer exchange spectra provide the first experimental evidence to show the existence of ionic exchange between sodium at Na5 and Na6 sites, revealing that Na transport route is possibly along three-dimensional chain of open channel-Na4-open channel. Variable-temperature NMR relaxometry is developed to evaluate Na jump rates and self-diffusion coefficient to probe the sodium-ion dynamics in NYSO. Furthermore, NYSO works well as a dual ion conductor in Na and Li metal batteries with Na3 V2 (PO4 )3 and LiFePO4 as cathodes, respectively. [ABSTRACT FROM AUTHOR]- Published
- 2024
- Full Text
- View/download PDF
38. Crystal structure and tautomeric state of Pigment Red 48:2 from X-ray powder diffraction and solid-state NMR.
- Author
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Bravetti, Federica, Hühn, Robert, Bordignon, Simone, Reibeling, Sylvia, and Schmidt, Martin U.
- Subjects
- *
X-ray powder diffraction , *CALCIUM ions , *CRYSTAL structure , *RIETVELD refinement , *ORGANIC dyes , *CHEMICAL shift (Nuclear magnetic resonance) - Abstract
Pigment Red 48:2 is an industrially important hydrazone pigment, used for the colouration of plastics and printing inks. The crystal structure of the commercial phase was solved and refined from X-ray powder diffraction data. The phase (P.R.48:2, α-phase) was found to be a monohydrate with a chemical composition of Ca[C18H11ClN2O6S]·H2O. Its tautomeric state was investigated by multinuclear solid-state NMR. The 15N CPMAS unambiguously revealed the compound to adopt the hydrazone tautomeric form in the solid state. In an unrestrained Rietveld refinement, the crystal structure did not significantly change. The crystal structure was confirmed by dispersion-corrected DFT optimisation, which also included the calculation of solid-state NMR chemical shifts. Heating the monohydrate to about 200 °C results in an anhydrate (P.R.48:2, β-phase), which has not been described before. Its crystal structure was determined by X-ray powder diffraction, and confirmed by DFT-D, too. Solid-state NMR spectra confirmed that the crystal structure of P.R.48:2 remains mostly unchanged upon dehydration and that also the hydrazone tautomeric form is maintained. Both crystal structures are similar and present a double-layer structure. The non-polar layer contains the phenyl and naphthalene moieties, whereas the polar/ionic layer comprehends the calcium ions, carboxylate, sulfonate, carbonyl groups and water molecules. The calcium ions have a coordination number of 8 and 7 in the monohydrate and anhydrate phases, respectively. For the corresponding Mn salt (Pigment Red 48:4), at least two phases were found, but the quality of the powder patterns did not allow determining their crystal structures. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
39. Thermodynamic and Kinetic Studies of the Precipitation of Double-Doped Amorphous Calcium Phosphate and Its Behaviour in Artificial Saliva.
- Author
-
Sezanova, Kostadinka, Gergulova, Rumiana, Shestakova, Pavletta, and Rabadjieva, Diana
- Subjects
- *
ARTIFICIAL saliva , *CALCIUM phosphate , *MAGNESIUM phosphate , *NUCLEAR magnetic resonance , *BIOMIMETIC synthesis , *NUCLEAR magnetic resonance spectroscopy , *CHEMICAL equilibrium - Abstract
Simulated body fluid (SBF) and artificial saliva (AS) are used in biomedical and dental research to mimic the physiological conditions of the human body. In this study, the biomimetic precipitation of double-doped amorphous calcium phosphate in SBF and AS are compared by thermodynamic modelling of chemical equilibrium in the SBF/AS-CaCl2-MgCl2-ZnCl2-K2HPO4-H2O and SBF/AS-CaCl2-MgCl2-ZnCl2-K2HPO4-Glycine/Valine-H2O systems. The saturation indices (SIs) of possible precipitate solid phases at pH 6.5, close to pH of AS, pH 7.5, close to pH of SBF, and pH 8.5, chosen by us based on our previous experimental data, were calculated. The results show possible precipitation of the same salts with almost equal SIs in the two biomimetic environments at the studied pHs. A decrease in the saturation indices of magnesium and zinc phosphates in the presence of glycine is a prerequisite for reducing their concentrations in the precipitates. Experimental studies confirmed the thermodynamic predictions. Only X-ray amorphous calcium phosphate with incorporated Mg (5.86–8.85 mol%) and Zn (0.71–2.84 mol%) was obtained in the experimental studies, irrespective of biomimetic media and synthesis route. Solid-state nuclear magnetic resonance (NMR) analysis showed that the synthesis route affects the degree of structural disorder of the precipitates. The lowest concentration of dopant ions was obtained in the presence of glycine. Further, the behaviour of the selected amorphous phase in artificial saliva was studied. The dynamic of Ca2+, Mg2+, and Zn2+ ions between the solid and liquid phases was monitored. Both direct excitation 31P NMR spectra and 1H-31P CP-MAS spectra proved the increase in the nanocrystalline hydroxyapatite phase upon increasing the incubation time in AS, which is more pronounced in samples with lower additives. The effect of the initial concentration of doped ions on the solid phase transformation was assessed by solid-state NMR. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
40. Quantification of Residual Water in Pharmaceutical Frozen Solutions Via 1H Solid-State NMR.
- Author
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Du, Yong and Su, Yongchao
- Subjects
- *
MAGIC angle spinning , *FREEZING points , *DRUG stability , *IONIC strength , *ICE - Abstract
Freezing is essential for the stability of biological drug substances and products, particularly in frozen solution formulations and during the primary drying of lyophilized preparations. However, the unfrozen segment within the frozen matrix can alter solute concentration, ionic strength, and stabilizer crystallization, posing risks of increased biophysical instability and faster chemical degradation. While quantifying the unfrozen water content is important for designing stable biopharmaceuticals, there is a lack of analytical techniques for in situ quantitative measurements. In this study, we introduce a 1H magic angle spinning NMR technique to identify the freezing point (T ice) and quantify mobile water content in frozen biologics, applying this method to analyze the freezing of a commercial high-concentration drug product, Dupixent®. Our results demonstrate that water freezing is influenced by buffer salt properties and formulation composition, including the presence of sugar cryoprotectants and protein concentration. Additionally, the 1H chemical shift can probe pH in the unfrozen phase, potentially predicting the microenvironmental acidity in the frozen state. Our proposed methodology provides fresh insights into the analysis of freeze-concentrated solutions, enhancing our understanding of the stability of frozen and lyophilized biopharmaceuticals. [Display omitted] [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
41. Recycling of Polyolefins for Multiple Lifecycles.
- Author
-
Matthews, Megan and van Reenen, Albert
- Subjects
- *
HIGH density polyethylene , *LIFE cycles (Biology) , *NUCLEAR magnetic resonance , *PLASTIC recycling , *POLYPROPYLENE - Abstract
The recycling of polyolefins for multiple life cycles is becoming a legislative requirement in the South African plastics industry. This study shows that this cannot be a blanket requirement for all polyolefins. While HDPE displays good resistance to weathering, the decrease in molecular weight limits the maximum number of life cycles before which the resultant product has lost all integrity. Impact polypropylenes fare much worse during weathering and more than 50% of impact properties are lost within the first 12 months of exposure. The blending of virgin material into degraded material can recover some properties of HDPE but not in the case of impact polypropylenes. The same legislation can therefore not be applied to all plastics and specific targets should depend on polymer composition. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
42. Structural analysis of silk using solid-state NMR.
- Author
-
Tetsuo Asakura
- Subjects
SILKWORMS ,ATMOSPHERIC pressure ,ATMOSPHERIC temperature ,BODY temperature ,SPIDERS - Abstract
Silkworms and spiders are capable of generating fibers that are both highly durable and elastic in a short span of time, using a silk solution stored within their bodies at room temperature and normal atmospheric pressure. The dragline silk fiber, which is essentially a spider's lifeline, surpasses the strength of a steel wire of equivalent thickness. Regrettably, humans have yet to replicate this process to produce fibers with similar high strength and elasticity in an eco-friendly manner. Therefore, it is of utmost importance to thoroughly comprehend the extraordinary structure and fibrillation mechanism of silk, and leverage this understanding in the manufacturing of high-strength, high-elasticity fibers. This review will delve into the recent progress in comprehending the structure of silks derived from silkworms and spiders, emphasizing the distinctive attributes of solidstate NMR. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
43. Solid-state NMR of the retinal protonated Schiff base in microbial rhodopsins.
- Author
-
Sari Kumagai and Izuru Kawamura
- Subjects
SCHIFF bases ,NUCLEAR magnetic resonance spectroscopy ,RHODOPSIN ,MEMBRANE proteins ,CHROMOPHORES - Abstract
Rhodopsin is a seven-helical transmembrane protein with a retinal chromophore covalently bound to a conserved lysine in helix G via a retinal protonated Schiff base (RPSB). Microbial rhodopsins absorb light through chromophore and play a fundamental role in optogenetics. Numerous microbial rhodopsins have been discovered, contributing to diverse functions and colors. Solid-state NMR spectroscopy has been instrumental in elucidating the conformation of chromophores and the three-dimensional structure of microbial rhodopsins. This review focuses on the 15N chemical shift values of RPSB and summarizes recent progress in the field. We displayed the correlation between the 15N isotropic chemical shift values of RPSB and the maximum absorption wavelength of rhodopsin using solid-state NMR spectroscopy. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
44. Trimethylamine N‐oxide (TMAO) doubly locks the hydrophobic core and surfaces of protein against desiccation stress.
- Author
-
Ru, Geying, Liu, Xiaoli, Ge, Yuwei, Wang, Liying, Jiang, Ling, Pielak, Gary, Liu, Maili, and Li, Conggang
- Abstract
Interactions between proteins and osmolytes are ubiquitous within cells, assisting in response to environmental stresses. However, our understanding of protein–osmolyte interactions underlying desiccation tolerance is limited. Here, we employ solid‐state NMR (ssNMR) to derive information about protein conformation and site‐specific interactions between the model protein, SH3, and the osmolyte trimethylamine N‐oxide (TMAO). The data show that SH3–TMAO interactions maintain key structured regions during desiccation and facilitate reversion to the protein's native state once desiccation stress is even slightly relieved. We identify 10 types of residues at 28 sites involved in the SH3–TMAO interactions. These sites comprise hydrophobic, positively charged, and aromatic amino acids located in SH3's hydrophobic core and surface clusters. TMAO locks both the hydrophobic core and surface clusters through its zwitterionic and trimethyl ends. This double locking is responsible for desiccation tolerance and differs from ideas based on exclusion, vitrification, and water replacement. ssNMR is a powerful tool for deepening our understanding of extremely weak protein−osmolyte interactions and providing insight into the evolutionary mechanism of environmental tolerance. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
45. Contrasting packing modes for tubular assemblies in chlorosomes.
- Author
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Miloslavina, Yuliya A., Thomas, Brijith, Reus, Michael, Gupta, Karthick Babu Sai Sankar, Oostergetel, Gert T., Andreas, Loren B., Holzwarth, Alfred R., and de Groot, Huub J. M.
- Abstract
The largest light-harvesting antenna in nature, the chlorosome, is a heterogeneous helical BChl self-assembly that has evolved in green bacteria to harvest light for performing photosynthesis in low-light environments. Guided by NMR chemical shifts and distance constraints for Chlorobaculum tepidum wild-type chlorosomes, the two contrasting packing modes for syn-anti parallel stacks of BChl c to form polar 2D arrays, with dipole moments adding up, are explored. Layered assemblies were optimized using local orbital density functional and plane wave pseudopotential methods. The packing mode with the lowest energy contains syn-anti and anti-syn H-bonding between stacks. It can accommodate R and S epimers, and side chain variability. For this packing, a match with the available EM data on the subunit axial repeat and optical data is obtained with multiple concentric cylinders for a rolling vector with the stacks running at an angle of 21° to the cylinder axis and with the BChl dipole moments running at an angle ß ∼ 55° to the tube axis, in accordance with optical data. A packing mode involving alternating syn and anti parallel stacks that is at variance with EM appears higher in energy. A weak cross-peak at -6 ppm in the MAS NMR with 50 kHz spinning, assigned to C-18
1 , matches the shift of antiparallel dimers, which possibly reflects a minor impurity-type fraction in the self-assembled BChl c. [ABSTRACT FROM AUTHOR]- Published
- 2024
- Full Text
- View/download PDF
46. Hexamethylene amiloride binds the SARS‐CoV‐2 envelope protein at the protein–lipid interface
- Author
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Somberg, Noah H, Medeiros‐Silva, João, Jo, Hyunil, Wang, Jun, DeGrado, William F, and Hong, Mei
- Subjects
Biochemistry and Cell Biology ,Medicinal and Biomolecular Chemistry ,Chemical Sciences ,Biological Sciences ,Infectious Diseases ,Emerging Infectious Diseases ,Coronaviruses ,Good Health and Well Being ,Humans ,Amiloride ,SARS-CoV-2 ,Lipid Bilayers ,COVID-19 ,drug binding ,SARS-CoV-2 envelope ,solid-state NMR ,viroporin ,Computation Theory and Mathematics ,Other Information and Computing Sciences ,Biophysics ,Biochemistry and cell biology ,Medicinal and biomolecular chemistry - Abstract
The SARS-CoV-2 envelope (E) protein forms a five-helix bundle in lipid bilayers whose cation-conducting activity is associated with the inflammatory response and respiratory distress symptoms of COVID-19. E channel activity is inhibited by the drug 5-(N,N-hexamethylene) amiloride (HMA). However, the binding site of HMA in E has not been determined. Here we use solid-state NMR to measure distances between HMA and the E transmembrane domain (ETM) in lipid bilayers. 13 C, 15 N-labeled HMA is combined with fluorinated or 13 C-labeled ETM. Conversely, fluorinated HMA is combined with 13 C, 15 N-labeled ETM. These orthogonal isotopic labeling patterns allow us to conduct dipolar recoupling NMR experiments to determine the HMA binding stoichiometry to ETM as well as HMA-protein distances. We find that HMA binds ETM with a stoichiometry of one drug per pentamer. Unexpectedly, the bound HMA is not centrally located within the channel pore, but lies on the lipid-facing surface in the middle of the TM domain. This result suggests that HMA may inhibit the E channel activity by interfering with the gating function of an aromatic network. These distance data are obtained under much lower drug concentrations than in previous chemical shift perturbation data, which showed the largest perturbation for N-terminal residues. This difference suggests that HMA has higher affinity for the protein-lipid interface than the channel pore. These results give insight into the inhibition mechanism of HMA for SARS-CoV-2 E.
- Published
- 2023
47. DNP enhanced solid-state NMR – A powerful tool to address the surface functionalization of cellulose/paper derived materials
- Author
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Mark V. Höfler, Jonas Lins, David Seelinger, Lukas Pachernegg, Timmy Schäfer, Stefan Spirk, Markus Biesalski, and Torsten Gutmann
- Subjects
Hydroxypropyl cellulose ,Dynamic nuclear polarization ,Solid-state NMR ,Spin labelling ,Selective enhancement ,Medical physics. Medical radiology. Nuclear medicine ,R895-920 ,Physics ,QC1-999 - Abstract
This concept summarizes recent advances in development and application of DNP enhanced multinuclear solid-state NMR to study the molecular structure and surface functionalization of cellulose and paper-based materials. Moreover, a novel application is presented where DNP enhanced 13C and 15N solid-state NMR is used to identify structure moieties formed by cross-linking of hydroxypropyl cellulose. Given these two aspects of this concept-type of article, we thus combine both, a review on recent findings already published and unpublished recent data that complement the existing knowledge in the field of characterization of functional lignocellulosic materials by DNP enhanced solid-state NMR.
- Published
- 2024
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- View/download PDF
48. MQMAS spectra of half-integer quadrupolar nuclei enhanced by indirect DNP
- Author
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Hiroki Nagashima, Julien Trébosc, Olivier Lafon, and Jean-Paul Amoureux
- Subjects
Solid-state NMR ,DNP ,Half-integer quadrupolar nuclei ,MQMAS ,D-RINEPT ,QCPMG ,Medical physics. Medical radiology. Nuclear medicine ,R895-920 ,Physics ,QC1-999 - Abstract
The observation of half-integer quadrupolar nuclei, which represent 66 % of the NMR-active isotopes, is essential to understand the atomic-level structure of inorganic materials near the surfaces with applications in the field of catalysis, biomaterials and optoelectronics. For that purpose, we have recently introduced an efficient technique, which combines the sensitivity gain provided by indirect DNP (dynamic nuclear polarization) under MAS (magic-angle spinning) and the high resolution obtained by refocusing the second-order quadrupolar interaction (H. Nagashima et al., J. Phys. Chem. Lett. 15 (2024) 4858). This technique combines (i) a D-RINEPT (dipolar-mediated refocused INEPT) transfer, (ii) an MQMAS (multiple-quantum MAS) filter, and (iii) a QCPMG (quadrupolar Carr-Purcell Meiboom-Gill) detection. We explain the design of several variants of this pulse sequence and notably the selection of the coherence transfer pathways. In particular, the amplitudes of the coherence transfer pathways through the ±3Q coherence orders of the quadrupolar isotope can be equalized using a train of π-pulses selective of the central transition, instead of a z-filter. This equalization method has the advantage to limit the length of the phase cycles and to enhance slightly the signal intensity. Moreover, for spin-3/2 nuclei subject to moderate or large quadrupolar interactions, more efficient excitation and conversion of 3Q coherences are achieved using cosine-modulated long-pulses (cos-lp), instead of fast-amplitude-modulated (FAM) pulses. The performances of the different D-RINEPT-MQMAS-QCPMG variants are compared through the observation of 35Cl and 27Al isotopes without DNP in l-histidine hydrochloride and isopropylamine-templated microporous aluminophosphate (ipa-AlPO4–14), respectively, as well as the acquisition of DNP-enhanced high-resolution spectra of 11B and 17O nuclei near the surface of partially oxidized boron nitride supported on dendritic and fibrous nanosilica and γ-alumina enriched in 17O isotope using a slurrying approach. The spectra recorded for γ-alumina show that the slurrying method produces less disorder than grinding assisted by 17O-enriched water.
- Published
- 2024
- Full Text
- View/download PDF
49. Unexpected temperature dependence of 1H paramagnetic shift in MAS NMR of nickelocene
- Author
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Xinbiao Jiang, Jiefan Liu, Xiaobing Lou, Bingwen Hu, and Ming Shen
- Subjects
Solid-state NMR ,NMR thermometer ,Paramagnetic NMR ,Paramagnetic shift ,Physical and theoretical chemistry ,QD450-801 ,Analytical chemistry ,QD71-142 - Abstract
This work revisits the temperature dependence of 1H paramagnetic shift in nickelocene as a potential nuclear magnetic resonance (NMR) thermometer under fast magic angle spinning (MAS) rate. Surprisingly, an abnormal temperature dependence of 1H paramagnetic shift has been observed. In addition to a 1/T dependence term, a 1/T2 dependence term must be included to correctly describe the curvature behavior of the δ1H-T correlation under fast MAS rate.
- Published
- 2024
- Full Text
- View/download PDF
50. Unveiling structural and dynamical features of chromatin using NMR spectroscopy
- Author
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Xiangyan Shi
- Subjects
Chromatin ,Structure ,Dynamics ,Phase separation ,Solution-state NMR ,Solid-state NMR ,Physical and theoretical chemistry ,QD450-801 ,Analytical chemistry ,QD71-142 - Abstract
Eukaryotic deoxyribonucleic acid (DNA) is wrapped around histone octamers (HOs) to form nucleosome core particles (NCPs), which in turn interact with linker DNA and linker histones to assemble chromatin fibers with more complex, high-order structures. The molecular properties of chromatin are dynamically regulated by several factors, such as post-translational modifications and effector proteins, to maintain genome stability. In the past two decades, high-resolution techniques have led to many breakthroughs in understanding the molecular mechanisms that govern chromatin regulation. Nuclear magnetic resonance (NMR) has emerged as one of the major techniques in this field, providing new insights into the nucleosomes and nucleosome-protein complexes in different states ranging from soluble form to condensed states. Solution-state NMR has proven valuable in elucidating the conformational dynamics and molecular interactions for histone N-terminal tails, histone core regions and DNA with the combination of specific isotopic labeling. Solid-state NMR, which is not constrained by the high molecular weights of complexes like nucleosomes, has been applied to capture the structural and dynamical characteristics of both flexible tails and rigid histone core regions in nucleosomes and their complexes with effector proteins. Furthermore, the combination of the two techniques allows tracking molecular properties of nucleosomes during phase separation processes, which potentially play essential roles in chromatin regulation. This review summarizes recent advances in NMR studies of chromatin structure and dynamics. It highlighted that NMR revealed unique molecular characteristics for nucleosomes that are often invisible experimentally by other techniques like cryogenic electron microscopy (cryo-EM) and X-ray diffraction (XRD). I envision that, with future efforts such as the development of NMR methods and optimization of sample production protocols, solution-state NMR and solid-state NMR will provide invaluable information to expand our understanding of chromatin activity and its regulatory processes.
- Published
- 2024
- Full Text
- View/download PDF
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