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14 results on '"Saarunya, Geetha"'

1. Deep representation learning identifies associations between physical activity and sleep patterns during pregnancy and prematurity

Author

Ravindra, Neal G., Espinosa, Camilo, Berson, Eloïse, Phongpreecha, Thanaphong, Zhao, Peinan, Becker, Martin, Chang, Alan L., Shome, Sayane, Marić, Ivana, De Francesco, Davide, Mataraso, Samson, Saarunya, Geetha, Thuraiappah, Melan, Xue, Lei, Gaudillière, Brice, Angst, Martin S., Shaw, Gary M., Herzog, Erik D., Stevenson, David K., England, Sarah K., and Aghaeepour, Nima

Published
2023
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2. Comprehensive overview of the anesthesiology research landscape: A machine Learning Analysis of 737 NIH-funded anesthesiology primary Investigator's publication trends

Author

Ghanem, Marc, Espinosa, Camilo, Chung, Philip, Reincke, Momsen, Harrison, Natasha, Phongpreecha, Thanaphong, Shome, Sayane, Saarunya, Geetha, Berson, Eloise, James, Tomin, Xie, Feng, Shu, Chi-Hung, Hazra, Debapriya, Mataraso, Samson, Kim, Yeasul, Seong, David, Chakraborty, Dipro, Studer, Manuel, Xue, Lei, Marić, Ivana, Chang, Alan L., Tjoa, Erico, Gaudillière, Brice, Tawfik, Vivianne L., Mackey, Sean, and Aghaeepour, Nima

Published
2024
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4. Large-scale correlation network construction for unraveling the coordination of complex biological systems

Author

Becker, Martin, Nassar, Huda, Espinosa, Camilo, Stelzer, Ina A., Feyaerts, Dorien, Berson, Eloise, Bidoki, Neda H., Chang, Alan L., Saarunya, Geetha, Culos, Anthony, De Francesco, Davide, Fallahzadeh, Ramin, Liu, Qun, Kim, Yeasul, Marić, Ivana, Mataraso, Samson J., Payrovnaziri, Seyedeh Neelufar, Phongpreecha, Thanaphong, Ravindra, Neal G., Stanley, Natalie, Shome, Sayane, Tan, Yuqi, Thuraiappah, Melan, Xenochristou, Maria, Xue, Lei, Shaw, Gary, Stevenson, David, Angst, Martin S., Gaudilliere, Brice, and Aghaeepour, Nima

Published
2023
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5. Identifying Long COVID Definitions, Predictors, and Risk Factors in the United States: A Scoping Review of Data Sources Utilizing Electronic Health Records.

Author

Luke, Rayanne A., Shaw Jr., George, Saarunya, Geetha, and Mollalo, Abolfazl

Subjects
POST-acute COVID-19 syndrome, ELECTRONIC health records, SCIENCE databases, MEDLINE, WEB databases, ANTIGEN analysis
Abstract

This scoping review explores the potential of electronic health records (EHR)-based studies to characterize long COVID. We screened all peer-reviewed publications in the English language from PubMed/MEDLINE, Scopus, and Web of Science databases until 14 September 2023, to identify the studies that defined or characterized long COVID based on data sources that utilized EHR in the United States, regardless of study design. We identified only 17 articles meeting the inclusion criteria. Respiratory conditions were consistently significant in all studies, followed by poor well-being features (n = 14, 82%) and cardiovascular conditions (n = 12, 71%). Some articles (n = 7, 41%) used a long COVID-specific marker to define the study population, relying mainly on ICD-10 codes and clinical visits for post-COVID-19 conditions. Among studies exploring plausible long COVID (n = 10, 59%), the most common methods were RT-PCR and antigen tests. The time delay for EHR data extraction post-test varied, ranging from four weeks to more than three months; however, most studies considering plausible long COVID used a waiting period of 28 to 31 days. Our findings suggest a limited utilization of EHR-derived data sources in defining long COVID, with only 59% of these studies incorporating a validation step. [ABSTRACT FROM AUTHOR]

Published
2024
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6. Comprehensive Overview of the Anesthesiology Research Landscape: A Machine Learning Analysis of 737 Nih-Funded Anesthesiology Primary Investigator's Publication Trends

Author

Ghanem, Marc, primary, Espinosa, Camilo, additional, Chung, Philip, additional, Reincke, Momsen, additional, Harrison, Natasha, additional, Phongpreecha, Thanaphong, additional, Shome, Sayane, additional, Saarunya, Geetha, additional, Berson, Eloise, additional, James, Tomin, additional, Xie, Feng, additional, Shu, Chi-Hung, additional, Hazra, Debapriya, additional, Mataraso, Samson, additional, Kim, Yeasul, additional, Seong, David, additional, Chakraborty, Dipro, additional, Studer, Manuel, additional, Xue, Lei, additional, Marić, Ivana, additional, Chang, Alan L., additional, Tjoa, Erico, additional, Gaudilliere, Brice, additional, Tawfik, Vivianne L., additional, Mackey, Sean, additional, and Aghaeepour, Nima, additional

Published
2024
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7. Revealing the impact of lifestyle stressors on the risk of adverse pregnancy outcomes with multitask machine learning

Author

Becker, Martin, primary, Dai, Jennifer, additional, Chang, Alan L., additional, Feyaerts, Dorien, additional, Stelzer, Ina A., additional, Zhang, Miao, additional, Berson, Eloise, additional, Saarunya, Geetha, additional, De Francesco, Davide, additional, Espinosa, Camilo, additional, Kim, Yeasul, additional, Marić, Ivana, additional, Mataraso, Samson, additional, Payrovnaziri, Seyedeh Neelufar, additional, Phongpreecha, Thanaphong, additional, Ravindra, Neal G., additional, Shome, Sayane, additional, Tan, Yuqi, additional, Thuraiappah, Melan, additional, Xue, Lei, additional, Mayo, Jonathan A., additional, Quaintance, Cecele C., additional, Laborde, Ana, additional, King, Lucy S., additional, Dhabhar, Firdaus S., additional, Gotlib, Ian H., additional, Wong, Ronald J., additional, Angst, Martin S., additional, Shaw, Gary M., additional, Stevenson, David K., additional, Gaudilliere, Brice, additional, and Aghaeepour, Nima, additional

Published
2022
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8. Genome Scale Analysis Reveals IscR Directly and Indirectly Regulates Virulence Factor Genes in Pathogenic Yersinia

Author

Balderas, David, primary, Mettert, Erin, additional, Lam, Hanh N., additional, Banerjee, Rajdeep, additional, Gverzdys, Tomas, additional, Alvarez, Pablo, additional, Saarunya, Geetha, additional, Tanner, Natasha, additional, Zoubedi, Adam, additional, Wei, Yahan, additional, Kiley, Patricia J., additional, and Auerbuch, Victoria, additional

Published
2021
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10. Global network of computational biology communities:ISCB's Regional Student Groups breaking barriers [version 1; peer review: not peer reviewed]

Author

Shome, Sayane, Gonzalo Parra, R., Fatima, Nazeefa, Monzon, Alexander Miguel, Cuypers, Bart, Moosa, Yumna, De Rocha Coimbra, Nilson, Assis, Juliana, Giner-Delgado, Carla, Dönertaş, Handan Melike, Cuesta-Astroz, Yesid, Saarunya, Geetha, Allali, Imane, Gupta, Shruti, Srivastava, Ambuj, Kalsan, Manisha, Valdivia, Catalina, Olguin-Orellana, Gabriel J., Papadimitriou, Sofia, Parisi, Daniele, Kristensen, Nikolaj Pagh, Rib, Leonor, Guebila, Marouen Ben, Bauer, Eugen, Zaffaroni, Gaia, Bekkar, Amel, Ashano, Efejiro, Paladin, Lisanna, Necci, Marco, Moreyra, Nicolás N., Rydén, Martin, Villalobos-Solís, Jordan, Papadopoulos, Nikolaos, Rafael, Candice, Karakulak, Tülay, Kaya, Yasin, Gladbach, Yasin, Dhanda, S. K. Sandeep Kumar, Šoštarić, Nikolina, Alex, Aishwarya, Deblasio, Dan, and Rahman, Farzana

Subjects
Early career bioinformaticians, EDUCACIÓN SUPERIOR, Bioinformatics, ISCB, BIOINFORMÁTICA, Computational Biology, Regional Student Groups, Collaboration, Symposia, Education, Student organizations, TECNOLOGÍA, Workshops, Education, ISCB Student Council, Networking, Virtual seminars, Symposia, Bioinformatics, Workshops
Abstract

Regional Student Groups (RSGs) of the International Society for Computational Biology Student Council (ISCB-SC) have been instrumental to connect computational biologists globally and to create more awareness about bioinformatics education. This article highlights the initiatives carried out by the RSGs both nationally and internationally to strengthen the present and future of the bioinformatics community. Moreover, we discuss the future directions the organization will take and the challenges to advance further in the ISCB-SC main mission: “Nurture the new generation of computational biologists”. Los Grupos de Estudiantes Regionales (RSG) del Consejo de Estudiantes de la Sociedad Internacional de Biología Computacional (ISCB-SC) han sido fundamentales para conectar a los biólogos computacionales a nivel mundial y crear más conciencia sobre la educación bioinformática. Este artículo destaca las iniciativas llevadas a cabo por los RSG tanto a nivel nacional como internacional para fortalecer el presente y el futuro de la comunidad bioinformática. Además, discutimos las direcciones futuras que tomará la organización y los desafíos para avanzar más en la misión principal de ISCB-SC: “Nutrir a la nueva generación de biólogos computacionales”. Iowa State University, Estados Unidos European Molecular Biology Laboratory, Alemania Uppsala University, Suecia University of Padova, Italia Institute of Tropical Medicine, Bélgica University of Antwerp, Bélgica University of KwaZulu Natal, Sudáfrica Universidade Federal de Minas Gerais, Brazil Universitat Autònoma de Barcelona, España European Bioinformatics Institute, Reino Unido Universidad de Antioquía, Colombia Universidad CES, Colombia University of South Carolina, Estados Unidos Mohammed V University in Rabat, Marruecos University of Cape Town, Sudáfrica Jawaharlal Nehru University, India Universidad Andres, Chile Universidad de Talca, Chile Université libre de Bruxelles-Vrije Universiteit Brusse, Bélgica Technical University of Denmark, Dinamarca University of Copenhagen, Dinamarca University of Luxembourg, Luxemburgo University of Lausanne, Suiza APIN Public Health Initiatives, Nigeria Institute of Ecology, Argentina Lund University, Suecia Universidad Nacional, Costa Rica Max Planck Institute for Biophysical Chemistry, Alemania Rhodes University, Sudáfrica Dokuz Eylül University, Turquía Hacettepe University, Turquía University Medical Center Rostock, Alemania University Heidelberg, Alemania La Jolla Institute for Immunology, Estados Unidos Katholieke Universiteit Leuven, Belgica Roche, Alemania Carnegie Mellon University, Estados Unidos University of South Wales, Reino Unido Canterbury Christ Church University, Reino Unido Escuela de Ciencias Biológicas

Published
2019

11. Global network of computational biology communities: ISCB's Regional Student Groups breaking barriers

Author

Shome, Sayane, Parra, R Gonzalo, Fatima, Nazeefa, Monzon, Alexander Miguel, Cuypers, Bart, Moosa, Yumna, Coimbra, Nilson Da Rocha, Assis, Juliana, Giner-Delgado, Carla, Dönertaş, Handan Melike, Cuesta-Astroz, Yesid, Saarunya, Geetha, Allali, Imane, Gupta, Shruti, Srivastava, Ambuj, Kalsan, Manisha, Valdivia, Catalina, J Olguin-Orellana, Gabriel, Papadimitriou, Sofia, Parisi, Daniele, Kristensen, Nikolaj Pagh, Rib, Leonor, Guebila, Marouen Ben, Bauer, Eugen, Zaffaroni, Gaia, Bekkar, Amel, Ashano, Efejiro, Paladin, Lisanna, Necci, Marco, Moreyra, Nicolás N, Rydén, Martin, Villalobos-Solís, Jordan, Papadopoulos, Nikolaos, Rafael, Candice, Karakulak, Tülay, Kaya, Yasin, Gladbach, Yvonne, Dhanda, Sandeep Kumar, Šoštarić, Nikolina, Alex, Aishwarya, DeBlasio, Dan, Rahman, Farzana, Shome, Sayane, Parra, R Gonzalo, Fatima, Nazeefa, Monzon, Alexander Miguel, Cuypers, Bart, Moosa, Yumna, Coimbra, Nilson Da Rocha, Assis, Juliana, Giner-Delgado, Carla, Dönertaş, Handan Melike, Cuesta-Astroz, Yesid, Saarunya, Geetha, Allali, Imane, Gupta, Shruti, Srivastava, Ambuj, Kalsan, Manisha, Valdivia, Catalina, J Olguin-Orellana, Gabriel, Papadimitriou, Sofia, Parisi, Daniele, Kristensen, Nikolaj Pagh, Rib, Leonor, Guebila, Marouen Ben, Bauer, Eugen, Zaffaroni, Gaia, Bekkar, Amel, Ashano, Efejiro, Paladin, Lisanna, Necci, Marco, Moreyra, Nicolás N, Rydén, Martin, Villalobos-Solís, Jordan, Papadopoulos, Nikolaos, Rafael, Candice, Karakulak, Tülay, Kaya, Yasin, Gladbach, Yvonne, Dhanda, Sandeep Kumar, Šoštarić, Nikolina, Alex, Aishwarya, DeBlasio, Dan, and Rahman, Farzana

Abstract

Regional Student Groups (RSGs) of the International Society for Computational Biology Student Council (ISCB-SC) have been instrumental to connect computational biologists globally and to create more awareness about bioinformatics education. This article highlights the initiatives carried out by the RSGs both nationally and internationally to strengthen the present and future of the bioinformatics community. Moreover, we discuss the future directions the organization will take and the challenges to advance further in the ISCB-SC main mission: "Nurture the new generation of computational biologists".

Published
2019

12. Global network of computational biology communities: ISCB's Regional Student Groups breaking barriers

Author

Shome, Sayane, primary, Parra, R. Gonzalo, additional, Fatima, Nazeefa, additional, Monzon, Alexander Miguel, additional, Cuypers, Bart, additional, Moosa, Yumna, additional, Coimbra, Nilson Da Rocha, additional, Assis, Juliana, additional, Giner-Delgado, Carla, additional, Dönertaş, Handan Melike, additional, Cuesta-Astroz, Yesid, additional, Saarunya, Geetha, additional, Allali, Imane, additional, Gupta, Shruti, additional, Srivastava, Ambuj, additional, Kalsan, Manisha, additional, Valdivia, Catalina, additional, J. Olguin-Orellana, Gabriel, additional, Papadimitriou, Sofia, additional, Parisi, Daniele, additional, Kristensen, Nikolaj Pagh, additional, Rib, Leonor, additional, Guebila, Marouen Ben, additional, Bauer, Eugen, additional, Zaffaroni, Gaia, additional, Bekkar, Amel, additional, Ashano, Efejiro, additional, Paladin, Lisanna, additional, Necci, Marco, additional, Moreyra, Nicolás N., additional, Rydén, Martin, additional, Villalobos-Solís, Jordan, additional, Papadopoulos, Nikolaos, additional, Rafael, Candice, additional, Karakulak, Tülay, additional, Kaya, Yasin, additional, Gladbach, Yvonne, additional, Dhanda, Sandeep Kumar, additional, Šoštarić, Nikolina, additional, Alex, Aishwarya, additional, DeBlasio, Dan, additional, and Rahman, Farzana, additional

Published
2019
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14. Commercial DNA extraction kits impact observed microbial community composition in permafrost samples

Author

Vishnivetskaya, Tatiana A., primary, Layton, Alice C., additional, Lau, Maggie C. Y., additional, Chauhan, Archana, additional, Cheng, Karen R., additional, Meyers, Arthur J., additional, Murphy, Jasity R., additional, Rogers, Alexandra W., additional, Saarunya, Geetha S., additional, Williams, Daniel E., additional, Pfiffner, Susan M., additional, Biggerstaff, John P., additional, Stackhouse, Brandon T., additional, Phelps, Tommy J., additional, Whyte, Lyle, additional, Sayler, Gary S., additional, and Onstott, Tullis C., additional

Published
2013
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