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Abstract Background LNX (Ligand of Numb Protein-X) proteins typically contain an amino-terminal RING domain adjacent to either two or four PDZ domains - a domain architecture that is unique to the LNX family. LNX proteins function as E3 ubiquitin ligases and their domain organisation suggests that their ubiquitin ligase activity may be targeted to specific substrates or subcellular locations by PDZ domain-mediated interactions. Indeed, numerous interaction partners for LNX proteins have been identified, but the in vivo functions of most family members remain largely unclear. Results To gain insights into their function we examined the phylogenetic origins and evolution of the LNX gene family. We find that a LNX1/LNX2-like gene arose in an early metazoan lineage by gene duplication and fusion events that combined a RING domain with four PDZ domains. These PDZ domains are closely related to the four carboxy-terminal domains from multiple PDZ domain containing protein-1 (MUPP1). Duplication of the LNX1/LNX2-like gene and subsequent loss of PDZ domains appears to have generated a gene encoding a LNX3/LNX4-like protein, with just two PDZ domains. This protein has novel carboxy-terminal sequences that include a potential modular LNX3 homology domain. The two ancestral LNX genes are present in some, but not all, invertebrate lineages. They were, however, maintained in the vertebrate lineage, with further duplication events giving rise to five LNX family members in most mammals. In addition, we identify novel interactions of LNX1 and LNX2 with three known MUPP1 ligands using yeast two-hybrid asssays. This demonstrates conservation of binding specificity between LNX and MUPP1 PDZ domains. Conclusions The LNX gene family has an early metazoan origin with a LNX1/LNX2-like protein likely giving rise to a LNX3/LNX4-like protein through the loss of PDZ domains. The absence of LNX orthologs in some lineages indicates that LNX proteins are not essential in invertebrates. In contrast, the maintenance of both ancestral LNX genes in the vertebrate lineage suggests the acquisition of essential vertebrate specific functions. The revelation that the LNX PDZ domains are phylogenetically related to domains in MUPP1, and have common binding specificities, suggests that LNX and MUPP1 may have similarities in their cellular functions.

We recently defined genetic traits that distinguish sympathetic from parasympathetic neurons, both preganglionic and ganglionic (Espinosa-Medina et al., Science 354:893–897, 2016). By this set of criteria, we found that the sacral autonomic outflow is sympathetic, not parasympathetic as has been thought for more than a century. Proposing such a belated shift in perspective begs the question why the new criterion (cell types defined by their genetic make-up and dependencies) should be favored over the anatomical, physiological and pharmacological considerations of long ago that inspired the “parasympathetic” classification. After a brief reminder of the former, we expound the weaknesses of the latter and argue that the novel genetic definition helps integrating neglected anatomical and physiological observations and clearing the path for future research. [ABSTRACT FROM AUTHOR]

NUMB is a key regulator of neurogenesis and neuronal differentiation that can be ubiquitinated and targeted for proteasomal degradation by ligand of numb protein-X (LNX) family E3 ubiquitin ligases. However, our understanding of LNX protein function in vivo is very limited. To examine the role of LNX proteins in regulating NUMB function in vivo, we generated mice lacking both LNX1 and LNX2 expression in the brain. Surprisingly, these mice are healthy, exhibit unaltered levels of NUMB protein and do not display any neuroanatomical defects indicative of aberrant NUMB function. Behavioural analysis of LNX1/LNX2 double knockout mice revealed decreased anxiety-related behaviour, as assessed in the open field and elevated plus maze paradigms. By contrast, no major defects in learning, motor or sensory function were observed. Given the apparent absence of major NUMB dysfunction in LNX null animals, we performed a proteomic analysis to identify neuronal LNX-interacting proteins other than NUMB that might contribute to the anxiolytic phenotype observed. We identified and/or confirmed interactions of LNX1 and LNX2 with proteins known to have presynaptic and neuronal signalling functions, including the presynaptic active zone constituents ERC1, ERC2 and LIPRIN-αs (PPFIA1, PPFIA3), as well as the F-BAR domain proteins FCHSD2 (nervous wreck homologue) and SRGAP2. These and other novel LNX-interacting proteins identified are promising candidates to mediate LNX functions in the central nervous system, including their role in modulating anxiety-related behaviour. [ABSTRACT FROM AUTHOR]

Background: Alzheimer's disease (AD) is a multifactorial disease with a strong genetic background. Recent genomic wide association studies have identified several loci linked to an increased risk of AD. However, genes regulated by these variants and the pathophysiological mechanisms regulated by those genes remain largely elusive. In this work, we studied the role of Bridging Integrator 1 (BIN1), the second most important AD risk gene after APOE, in neurons generated from human induced pluripotent stem cells (hiPSCs) in bi‐dimensional cultures and cerebral organoids. Method: We generated isogenic BIN1 wild‐type (WT), heterozygous (HET) and knockout (KO) hiPSC lines and used these cells to generate human‐induced neurons (hiNs) in bi‐dimensional (2D) and three‐dimensional (cerebral organoids) cell cultures. Next, we used calcium imaging and multi‐electrode array electrophysiology to study the functional properties of hiNs networks. Single‐nucleus RNA‐sequencing (snRNAseq) was used to identify gene expression alterations in individual cell types/subtypes. APP processing and TAU phosphorylation was assessed by western blotting and Alphalisa. Result: We observed that deletion of BIN1 is sufficient to cause neuronal hyperactivation and network desynchronization in a cell‐autonomous fashion. These functional changes are observed both in 2D cultures and cerebral organoids, and are correlated with increased Tau phosphorylation and transcriptional changes similar to those observed in the brains of AD patients, particularly in glutamatergic neurons. Conclusion: Our results reveal a role for BIN1 in the regulation of electrical activity in human neurons and suggest that its implication in AD pathogenesis could be related to the neuronal and network dysfunctions observed in the AD brain. [ABSTRACT FROM AUTHOR]

Background: The BIN1 (Bridging Integrator‐1) gene is the second most important Alzheimer's disease risk gene and has been associated with synaptic transmission defects in animal models. PTK2B (Protein Tyrosine Kinase 2β) is a Ca2+‐activated non‐receptor tyrosine kinase, also identified by genome‐wide association study (GWAS) as an important AD risk factor, and playing a role in the mouse hippocampal synaptic plasticity. Method: In this work, we aimed at studying the possible effects of BIN1 or PTK2B underexpression in the electrical activity taking advantage of human induced pluripotent stem cell (hiPSC)‐derived neurons. To this aim, we are using hiPSCs expressing allelic variants of BIN (BIN1+/+ and BIN1‐/‐) or PTK2B (PTK2B+/+, PTK2B+/‐ and PTK2B ‐/‐). Human induced neural progenitor cells (hiNPCs) are generated from these hiPSCs, which are further differentiated into mature neurons and glia. We evaluated the gene expression, cell type composition of cultures, and neuronal electrical activity using western blot, immunocytochemistry, pharmacological assays, and calcium imaging as a readout of the electrical function. Result: Our preliminary data suggest that BIN1 KO decreases proliferation of NPCs. In addition, analyses of calcium imaging recordings show decreased number of active cells although, the active ones show a higher calcium spikes frequency and less synchronization. Furthermore, neuronal activity or PTK2B underexpression impairs the differentiation potential of hiNPCs into neurons. As well, and increased calcium spikes frequency in hiNs. Conclusion: Taken together, our preliminary panel of data suggests that both BIN1 and PTK2B regulate important biological processes involved in neuronal differentiation and electrical maturation. Thus, altered expression of these genes in the AD brain could play a role in neuronal hyperexcitability observed in patients. [ABSTRACT FROM AUTHOR]