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4. Application of slow-controlled release fertilizer coordinates the carbon flow in carbon-nitrogen metabolism to effect rice quality

Author

Jiang, Zhengrong, primary, Chen, Qiuli, additional, Liu, Dun, additional, Tao, Weike, additional, Gao, Shen, additional, Li, Jiaqi, additional, Lin, Chunhao, additional, Zhu, Meichen, additional, Ding, Yanfeng, additional, Li, Weiwei, additional, Li, Ganghua, additional, Sakr, Soulaiman, additional, and Hong, Xueli, additional

Published
2023
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8. Glucose-6-Phosphate Dehydrogenases: The Hidden Players of Plant Physiology

Author

Jiang, Zhengrong, primary, Wang, Ming, additional, Nicolas, Michael, additional, Ogé, Laurent, additional, Pérez-Garcia, Maria-Dolores, additional, Crespel, Laurent, additional, Li, Ganghua, additional, Ding, Yanfeng, additional, Le Gourrierec, José, additional, Grappin, Philippe, additional, and Sakr, Soulaiman, additional

Published
2022
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11. Biostimulant Properties of Protein Hydrolysates: Recent Advances and Future Challenges.

Author

Malécange, Marthe, Sergheraert, Renaud, Teulat, Béatrice, Mounier, Emmanuelle, Lothier, Jérémy, and Sakr, Soulaiman

Subjects
PROTEIN hydrolysates, AGRICULTURAL climatology, CROPS, AMINO acids, AGRICULTURAL productivity
Abstract

Over the past decade, plant biostimulants have been increasingly used in agriculture as environment-friendly tools that improve the sustainability and resilience of crop production systems under environmental stresses. Protein hydrolysates (PHs) are a main category of biostimulants produced by chemical or enzymatic hydrolysis of proteins from animal or plant sources. Mostly composed of amino acids and peptides, PHs have a beneficial effect on multiple physiological processes, including photosynthetic activity, nutrient assimilation and translocation, and also quality parameters. They also seem to have hormone-like activities. Moreover, PHs enhance tolerance to abiotic stresses, notably through the stimulation of protective processes such as cell antioxidant activity and osmotic adjustment. Knowledge on their mode of action, however, is still piecemeal. The aims of this review are as follows: (i) Giving a comprehensive overview of current findings about the hypothetical mechanisms of action of PHs; (ii) Emphasizing the knowledge gaps that deserve to be urgently addressed with a view to efficiently improve the benefits of biostimulants for different plant crops in the context of climate change. [ABSTRACT FROM AUTHOR]

Published
2023
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13. Sink Strength Promoting Remobilization of Non-Structural Carbohydrates by Activating Sugar Signaling in Rice Stem during Grain Filling

Author

Jiang, Zhengrong, primary, Chen, Qiuli, additional, Chen, Lin, additional, Liu, Dun, additional, Yang, Hongyi, additional, Xu, Congshan, additional, Hong, Jinzhi, additional, Li, Jiaqi, additional, Ding, Yanfeng, additional, Sakr, Soulaiman, additional, Liu, Zhenghui, additional, Jiang, Yu, additional, and Li, Ganghua, additional

Published
2022
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20. Sucrose promotes D53 accumulation and tillering in rice

Author

Patil, Suyash B., primary, Barbier, Francois F., additional, Zhao, Jinfeng, additional, Zafar, Syed A., additional, Uzair, Muhammad, additional, Sun, Yinglu, additional, Fang, Jingjing, additional, Perez‐Garcia, Maria‐Dolores, additional, Bertheloot, Jessica, additional, Sakr, Soulaiman, additional, Fichtner, Franziska, additional, Chabikwa, Tinashe G., additional, Yuan, Shoujiang, additional, Beveridge, Christine A., additional, and Li, Xueyong, additional

Published
2021
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22. Leafamine ® , a Free Amino Acid-Rich Biostimulant, Promotes Growth Performance of Deficit-Irrigated Lettuce.

Author

Malécange, Marthe, Pérez-Garcia, Maria-Dolores, Citerne, Sylvie, Sergheraert, Renaud, Lalande, Julie, Teulat, Béatrice, Mounier, Emmanuelle, Sakr, Soulaiman, and Lothier, Jérémy

Subjects
LETTUCE, PROTEIN hydrolysates, PLANT metabolism, LEAF area, RAFFINOSE, ABIOTIC stress, PHYTOCHELATINS
Abstract

Water deficit causes substantial yield losses that climate change is going to make even more problematic. Sustainable agricultural practices are increasingly developed to improve plant tolerance to abiotic stresses. One innovative solution amongst others is the integration of plant biostimulants in agriculture. In this work, we investigate for the first time the effects of the biostimulant –Leafamine®–a protein hydrolysate on greenhouse lettuce (Lactuca sativa L.) grown under well-watered and water-deficit conditions. We examined the physiological and metabolomic water deficit responses of lettuce treated with Leafamine® (0.585 g/pot) or not. Root application of Leafamine® increased the shoot fresh biomass of both well-watered (+40%) and deficit-irrigated (+20%) lettuce plants because the projected leaf area increased. Our results also indicate that Leafamine® application could adjust the nitrogen metabolism by enhancing the total nitrogen content, amino acid (proline) contents and the total protein level in lettuce leaves, irrespective of the water condition. Osmolytes such as soluble sugars and polyols, also increased in Leafamine®-treated lettuce. Our findings suggest that the protective effect of Leafamine is a widespread change in plant metabolism and could involve ABA, putrescine and raffinose. [ABSTRACT FROM AUTHOR]

Published
2022
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25. Sucrose represses the expression of the strigolactone signalling gene D3/RMS4/MAX2 to promote tillering

Author

Patil, Suyash, Barbier, Francois, Zhao, Jinfeng, Zafar, Syed Adeel, Uzair, Muhammad, Sun, Yinglu, Fang, Jingjing, Bertheloot, Jessica, Sakr, Soulaiman, Fichtner, Franziska, Chabikwa, Tinashe, Yuan, Shoujiang, Beveridge, Christine, Li, Xueyong, National Key Facility for Crop Gene Resources and Genetic Improvement, Key Laboratory of Crop Germplasm Resources and Utilization, Ministry of Agriculture Institute of Crop Science, Chinese Academy of Agricultural Sciences (CAAS), Centre for Marine Science, School of Biological Sciences, University of Queensland, University of Queensland [Brisbane], Institut de Recherche en Horticulture et Semences (IRHS), Université d'Angers (UA)-AGROCAMPUS OUEST, Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), and Shandong University

Subjects
[SDV.GEN.GPL]Life Sciences [q-bio]/Genetics/Plants genetics, food and beverages, shoot branching, sugar signalling, strigolactones, plant architecture
Abstract

Shoot branching, which is regulated by a complex signalling network, is a major component of plant architecture and therefore of crop yield. Sugars, acting in a network with hormones, have recently emerged as key players in the control of shoot branching. Previous studies in dicotyledonous plants have shown that sucrose suppresses the inhibitory effect of the plant hormone strigolactone (SL) during this process. The molecular mechanisms underlying this effect are unknown. Here we show that sucrose could antagonise the suppressive action of SL on tillering in rice. At the mechanistic level, we revealed that sucrose alleviates SL-mediated degradation of D53. Increase in sucrose availability inhibits the expression of D3 , which encodes the orthologue of the arabidopsis F-box MAX2 required for SL signalling. Over-expression of D3 prevented sucrose from inhibiting D53 degradation and enabled the SL inhibition of tillering under high sucrose. The enhanced bud elongation of the d3 mutant to sucrose treatment indicates that suppressed SL perception reduces the minimum amount of sucrose required for sustained bud outgrowth. Decapitation and sugar feeding experiments in pea indicate that RMS4 , the D3/MAX2 orthologue in pea, is also involved in the interactions between sucrose and SL. This work shows that D3/MAX2/RMS4 is a key component in the integrating both SL and sugar pathways during the regulation of shoot architecture.

Published
2020

26. Sucrose promotes D53 accumulation and tillering in rice.

Author

Patil, Suyash B., Barbier, Francois F., Zhao, Jinfeng, Zafar, Syed A., Uzair, Muhammad, Sun, Yinglu, Fang, Jingjing, Perez‐Garcia, Maria‐Dolores, Bertheloot, Jessica, Sakr, Soulaiman, Fichtner, Franziska, Chabikwa, Tinashe G., Yuan, Shoujiang, Beveridge, Christine A., and Li, Xueyong

Subjects
SUCROSE, DRUG target, PLANT nutrients, RICE, GENE expression
Abstract

Summary: Shoot branching is regulated by multiple signals. Previous studies have indicated that sucrose may promote shoot branching through suppressing the inhibitory effect of the hormone strigolactone (SL). However, the molecular mechanisms underlying this effect are unknown.Here, we used molecular and genetic tools to identify the molecular targets underlying the antagonistic interaction between sucrose and SL.We showed that sucrose antagonizes the suppressive action of SL on tillering in rice and on the degradation of D53, a major target of SL signalling. Sucrose inhibits the gene expression of D3, the orthologue of the Arabidopsis F‐box MAX2 required for SL signalling. Overexpression of D3 antagonizes sucrose inhibition of D53 degradation and enables the SL inhibition of tillering under high sucrose. Sucrose prevents SL‐induced degradation of D14, the SL receptor involved in D53 degradation. In contrast to D3, D14 overexpression enhances D53 protein levels and sucrose‐induced tillering, even in the presence of SL.Our results show that sucrose inhibits SL response by affecting key components of SL signalling and, together with previous studies reporting the inhibition of SL synthesis by nitrate and phosphate, demonstrate the central role played by SLs in the regulation of plant architecture by nutrients. See also the Commentary on this article by Finlayson, 234: 7–9. [ABSTRACT FROM AUTHOR]

Published
2022
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27. Outgrowth of the axillary bud in rose is controlled by sugar metabolism and signalling

Author

Wang, Ming, primary, Pérez-Garcia, Maria-Dolores, additional, Davière, Jean-Michel, additional, Barbier, François, additional, Ogé, Laurent, additional, Gentilhomme, José, additional, Voisine, Linda, additional, Péron, Thomas, additional, Launay-Avon, Alexandra, additional, Clément, Gilles, additional, Baumberger, Nicolas, additional, Balzergue, Sandrine, additional, Macherel, David, additional, Grappin, Philippe, additional, Bertheloot, Jessica, additional, Achard, Patrick, additional, Hamama, Latifa, additional, and Sakr, Soulaiman, additional

Published
2021
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28. Convergence and Divergence of Sugar and Cytokinin Signaling in Plant Development

Author

Wang, Ming, primary, Le Gourrierec, José, additional, Jiao, Fuchao, additional, Demotes-Mainard, Sabine, additional, Perez-Garcia, Maria-Dolores, additional, Ogé, Laurent, additional, Hamama, Latifa, additional, Crespel, Laurent, additional, Bertheloot, Jessica, additional, Chen, Jingtang, additional, Grappin, Philippe, additional, and Sakr, Soulaiman, additional

Published
2021
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29. Sucrose promotes D53 accumulation and tillering in rice

Author

Patil, Suyash B., primary, Barbier, Francois F., additional, Zhao, Jinfeng, additional, Zafar, Syed Adeel, additional, Uzair, Muhammad, additional, Sun, Yinglu, additional, Fang, Jingjing, additional, Perez-Garcia, Maria-Dolores, additional, Bertheloot, Jessica, additional, Sakr, Soulaiman, additional, Fichtner, Franziska, additional, Chabikwa, Tinashe G., additional, Yuan, Shoujiang, additional, Beveridge, Christine A., additional, and Li, Xueyong, additional

Published
2020
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39. Branching integrated response to environment and genotype

Author

Le Gourrierec, Jose, Crespel, Laurent, Demotes-Mainard, Sabine, Sakr, Soulaiman, Pelleschi-Travier, Sandrine, Lebras, Camille, Dubuc, B., Lebrec, Anita, Ledroit, Lydie, Autret, Herve, Perez-Garcia, Maria Dolores, Amoroso, T., Mallet., J., Schneidier, A., Wang, M., Bertheloot, Jessica, Institut de Recherche en Horticulture et Semences (IRHS), Université d'Angers (UA)-AGROCAMPUS OUEST, and Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)

Subjects
[SDV]Life Sciences [q-bio], ComputingMilieux_MISCELLANEOUS
Abstract

International audience

Published
2019

40. Application of news films converting sunlight spectrum for melon crop under low tunnels

Author

Jouault, Anaïs, Guérin, Vincent, Lemarié, Séverine, Cordier, S, Guignard, G., Proost, K., Demotes-Mainard, Sabine, Bertheloot, Jessica, Crespel, Laurent, Gentilhomme, L., Gardet, Remi, Granger, Jacky, Sakr, Soulaiman, Peilleron, F., Institut de Recherche en Horticulture et Semences (IRHS), Université d'Angers (UA)-AGROCAMPUS OUEST, and Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)

Subjects
[SDV]Life Sciences [q-bio], ComputingMilieux_MISCELLANEOUS
Abstract

International audience

Published
2019

41. Transcriptome database resource and gene expression atlas for the rose

Author

Dubois Annick, Carrere Sebastien, Raymond Olivier, Pouvreau Benjamin, Cottret Ludovic, Roccia Aymeric, Onesto Jean-Paul, Sakr Soulaiman, Atanassova Rossitza, Baudino Sylvie, Foucher Fabrice, Bris Manuel, Gouzy Jérôme, and Bendahmane Mohammed

Subjects
Rose, Transcriptome, Gene expression atlas, Biotechnology, TP248.13-248.65, Genetics, QH426-470
Abstract

Abstract Background For centuries roses have been selected based on a number of traits. Little information exists on the genetic and molecular basis that contributes to these traits, mainly because information on expressed genes for this economically important ornamental plant is scarce. Results Here, we used a combination of Illumina and 454 sequencing technologies to generate information on Rosa sp. transcripts using RNA from various tissues and in response to biotic and abiotic stresses. A total of 80714 transcript clusters were identified and 76611 peptides have been predicted among which 20997 have been clustered into 13900 protein families. BLASTp hits in closely related Rosaceae species revealed that about half of the predicted peptides in the strawberry and peach genomes have orthologs in Rosa dataset. Digital expression was obtained using RNA samples from organs at different development stages and under different stress conditions. qPCR validated the digital expression data for a selection of 23 genes with high or low expression levels. Comparative gene expression analyses between the different tissues and organs allowed the identification of clusters that are highly enriched in given tissues or under particular conditions, demonstrating the usefulness of the digital gene expression analysis. A web interface ROSAseq was created that allows data interrogation by BLAST, subsequent analysis of DNA clusters and access to thorough transcript annotation including best BLAST matches on Fragaria vesca, Prunus persica and Arabidopsis. The rose peptides dataset was used to create the ROSAcyc resource pathway database that allows access to the putative genes and enzymatic pathways. Conclusions The study provides useful information on Rosa expressed genes, with thorough annotation and an overview of expression patterns for transcripts with good accuracy.

Published
2012
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42. Using greenhouse to emulate urban conditions for plants experimentations

Author

Chantoiseau, Etienne, Bournet, Pierre-Emmanuel, Sakr, Soulaiman, Cannavo, Patrice, Huche-Thelier, Lydie, R., Nacccour, Unité de Recherche Environnement Physique de la plante Horticole (EPHOR), AGROCAMPUS OUEST, Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Université d'Angers (UA), Institut de Recherche en Horticulture et Semences (IRHS), Université d'Angers (UA)-AGROCAMPUS OUEST, and Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)

Subjects
[SDV.BV]Life Sciences [q-bio]/Vegetal Biology, [PHYS.MECA.MEFL]Physics [physics]/Mechanics [physics]/Fluid mechanics [physics.class-ph], [SDV.SA.HORT]Life Sciences [q-bio]/Agricultural sciences/Horticulture, ComputingMilieux_MISCELLANEOUS
Abstract

International audience

Published
2018

43. A high-quality genome sequence of Rosa chinensis to elucidate ornamental traits

Author

Hibrand Saint Oyant, Laurence, Ruttink, T., Hamama, Latifa, Kirov, I., Lakhwani, Deepika, Zhou, Ningning, Bourke, P. M., Daccord, Nicolas, Leus, L., Schulz, D., Van de Geest, H., Hesselink, T., Van Laere, K., Debray, Kevin, Balzergue, Sandrine, Thouroude, Tatiana, Chastellier, Annie, Jeauffre, Julien, Voisine, Linda, Gaillard, Sylvain, Borm, T. J. A., Arens, P., Voorrips, R. E., Maliepaard, C., Neu, E., Linde, M., Le Paslier, Marie-Christine, Bérard, Aurélie, Bounon, Rémi, Clotault, Jérémy, Choisne, Nathalie, Quesneville, Hadi, Kawamura, K., Aubourg, Sébastien, Sakr, Soulaiman, Smulders, M. J. M., Schijlen, E., Bucher, Etienne, Debener, T., De Riek, J., and Foucher, Fabrice

Subjects
Vegetal Biology, fungi, food and beverages, Biologie végétale
Abstract

Rose is the world’s most important ornamental plant, with economic, cultural and symbolic value. Roses are cultivated worldwide and sold as garden roses, cut flowers and potted plants. Roses are outbred and can have various ploidy levels. Our objectives were to develop a high-quality reference genome sequence for the genus Rosa by sequencing a doubled haploid, combining long and short reads, and anchoring to a high-density genetic map, and to study the genome structure and genetic basis of major ornamental traits. We produced a doubled haploid rose line (‘HapOB’) from Rosa chinensis ‘Old Blush’ and generated a rose genome assembly anchored to seven pseudo-chromosomes (512 Mb with N50 of 3.4 Mb and 564 contigs). The length of 512 Mb represents 90.1–96.1% of the estimated haploid genome size of rose. Of the assembly, 95% is contained in only 196 contigs. The anchoring was validated using high-density diploid and tetraploid genetic maps. We delineated hallmark chromosomal features, including the pericentromeric regions, through annotation of transposable element families and positioned centromeric repeats using fluorescent in situ hybridization. The rose genome displays extensive synteny with the Fragaria vesca genome, and we delineated only two major rearrangements. Genetic diversity was analysed using resequencing data of seven diploid and one tetraploid Rosa species selected from various sections of the genus. Combining genetic and genomic approaches, we identified potential genetic regulators of key ornamental traits, including prickle density and the number of flower petals. A rose APETALA2/TOE homologue is proposed to be the major regulator of petal number in rose. This reference sequence is an important resource for studying polyploidization, meiosis and developmental processes, as we demonstrated for flower and prickle development. It will also accelerate breeding through the development of molecular markers linked to traits, the identification of the genes underlying them and the exploitation of synteny across Rosaceae.

Published
2018

44. Posttranscriptional Regulation of RhBRC1 (Rosa hybrida BRANCHED1) in Response to Sugars is Mediated via its Own 3′ Untranslated Region, with a Potential Role of RhPUF4 (Pumilio RNA-Binding Protein Family)

Author

Wang, Ming, primary, Ogé, Laurent, additional, Voisine, Linda, additional, Perez-Garcia, Maria-Dolores, additional, Jeauffre, Julien, additional, Hibrand Saint-Oyant, Laurence, additional, Grappin, Philippe, additional, Hamama, Latifa, additional, and Sakr, Soulaiman, additional

Published
2019
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45. BRANCHED1: A Key Hub of Shoot Branching

Author

Wang, Ming, primary, Le Moigne, Marie-Anne, additional, Bertheloot, Jessica, additional, Crespel, Laurent, additional, Perez-Garcia, Maria-Dolores, additional, Ogé, Laurent, additional, Demotes-Mainard, Sabine, additional, Hamama, Latifa, additional, Davière, Jean-Michel, additional, and Sakr, Soulaiman, additional

Published
2019
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46. What are the contributions of cytokinins, abscisic acid and sugars in bud outgrowth regulation by light intensity in rose?

Author

Corot, Adrien, Roman, Hanaé, Bertheloot, Jessica, Leduc, Nathalie, Sakr, Soulaiman, Demotes-Mainard, Sabine, Institut de Recherche en Horticulture et Semences (IRHS), Université d'Angers (UA)-Institut National de la Recherche Agronomique (INRA)-AGROCAMPUS OUEST, 'Objectif Végétal, Research, Education and Innovation in Pays de la Loire', supported by the French Region Pays de la Loire, Angers Loire Métropole and the European Regional Development Fund., Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro), International Society for Horticultural Science (ISHS). INT., and AGROCAMPUS OUEST-Institut National de la Recherche Agronomique (INRA)-Université d'Angers (UA)

Subjects
[SDV.SA]Life Sciences [q-bio]/Agricultural sciences, [SDV.BIO]Life Sciences [q-bio]/Biotechnology, fungi, food and beverages, [SDV.BV]Life Sciences [q-bio]/Vegetal Biology, light, bud outgrowth regulation, [SDV.BDD]Life Sciences [q-bio]/Development Biology, rose
Abstract

In ornamentals, particularly in rose bush, the visual quality of a plant is an important element of its quality. Bud outgrowth, which is at the origin of branching, strongly impacts plant shape and compactness, that are two traits involved in rosebush visual quality (Boumaza et al. 2009).Changes in the environmental conditions, in particular in light intensity, can impact the number of buds that grow out and change bud outgrowth gradient along a stem in various species, including rose (Leduc et al. 2014; Furet et al. 2014). Bud outgrowth is controlled by a network of interacting hormones, the principal ones are auxin, cytokinins and strigolactones, but the role of abscisic acid is also emerging. Sugars are involved in bud outgrowth regulation too and they interact with the hormonal network. A natural hypothesis is that decreasing light intensity may limit bud outgrowth via a shortage in sugars and changes in plant hormonal content. However, the mechanisms by which light intensity affects bud outgrowth, especiallythe respective role of the different hormones and sugars in this regulation, is still poorly understood.The objective of this work was to test if the control of bud outgrowth gradient along the stem by light intensity is mediated by sugars, cytokinins and/or abscisic acid and to assess which of these actors is the main limiting actor. The study was conducted on whole plants and attention was paid to the location of bud outgrowth along the shoot.

Published
2017

50. Control by light intensity of bud outgrowth along the axis of Rosa hybrida'Radrazz'

Author

Corot, Adrien, Leduc, Nathalie, Sakr, Soulaiman, Demotes-Mainard, Sabine, Institut de Recherche en Horticulture et Semences (IRHS), Université d'Angers (UA)-Institut National de la Recherche Agronomique (INRA)-AGROCAMPUS OUEST, Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro), and 'Objectif Végétal, Education and Innovation in Pays de la Loire'

Subjects
métabolisme des sucres, stimulation hormonale, [SDV]Life Sciences [q-bio], ramification, [SDE]Environmental Sciences, rosier, [SDV.BV]Life Sciences [q-bio]/Vegetal Biology, intensité lumineuse, ComputingMilieux_MISCELLANEOUS, architecture de la plante
Abstract

National audience

Published
2016

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