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The Northern California Current is a highly productive marine upwelling ecosystem that is economically and ecologically important. It is home to both commercially harvested species and those that are federally listed under the U.S. Endangered Species Act. Recently, there has been a global shift from single-species fisheries management to ecosystem-based fisheries management, which acknowledges that more complex dynamics can reverberate through a food web. Here, we have integrated new research into an end-to-end ecosystem model (i.e., physics to fisheries) using data from long-term ocean surveys, phytoplankton satellite imagery paired with a vertically generalized production model, a recently assembled diet database, fishery catch information, species distribution models, and existing literature. This spatially-explicit model includes 90 living and detrital functional groups ranging from phytoplankton, krill, and forage fish to salmon, seabirds, and marine mammals, and nine fisheries that occur off the coast of Washington, Oregon, and Northern California. This model was updated from previous regional models to account for more recent changes in the Northern California Current (e.g., increases in market squid and some gelatinous zooplankton such as pyrosomes and salps), to expand the previous domain to increase the spatial resolution, to include data from previously unincorporated surveys, and to add improved characterization of endangered species, such as Chinook salmon (Oncorhynchus tshawytscha) and southern resident killer whales (Orcinus orca). Our model is mass-balanced, ecologically plausible, without extinctions, and stable over 150-year simulations. Ammonium and nitrate availability, total primary production rates, and model-derived phytoplankton time series are within realistic ranges. As we move towards holistic ecosystem-based fisheries management, we must continue to openly and collaboratively integrate our disparate datasets and collective knowledge to solve the intricate problems we face. As a tool for future research, we provide the data and code to use our ecosystem model.

The sustainability of the salmon farming industry is being challenged by increased mortality rates. Scotland's open-source salmon production data provides the possibility of developing an industry-wide mortality monitoring model, valuable for identifying and addressing unexpected increases in mortality without needing data sharing agreements across different companies. This study aimed to utilize these data to develop a hierarchical dynamic linear model (DLM) for monitoring monthly mortality of maricultured Atlantic salmon in Scotland. We evaluated whether considering the hierarchical structure present in the data (country, region, and site) would improve mortality predictions when compared to the production cycle level DLMs developed in a previous study. Our findings demonstrated that the hierarchical DLM outperformed the production cycle level DLMs, confirming the value of this more complex modelling approach. Nevertheless, the hierarchical model, like the production cycle level DLMs, exhibited some uncertainty in the mortality predictions. When mortality is higher than expected, site level warnings are generated, which can encourage producers and inspectors to further investigate the cause. Between 2015 and 2020, approximately 25% of the production cycles and 50% of the sites encountered at least one warning, with most warnings happening in the summer and autumn months. Additionally, the hierarchical model enabled monitoring mortality at multiple levels. This information is useful for various stakeholders as part of a monitoring system, offering insights into mortality trends at national, regional, and sites levels that may benefit from strategic resource management. Recommendations for model improvements include utilizing shorter data aggregation periods, such as weekly, which are not currently available as open-source data. [ABSTRACT FROM AUTHOR]

Salmon is the most commonly consumed finfish in the United States of America (USA), and the mislabeling of salmon is a widespread problem. Washington State is a global supplier of wild-caught Pacific salmon and local salmon mislabeling results in substantial economic, ecological, and cultural impacts. Previous studies in Washington State identified high levels of mislabeled salmon in both markets and restaurants, resulting in local legislation being passed that requires proper labeling of salmon products, including identifying it as wild-caught or farm-raised. To investigate whether recent legislative efforts reduced salmon fraud rates, we acquired and genetically barcoded salmon samples from 67 grocery stores and 52 sushi restaurants in Seattle, Washington. DNA from each salmon sample was isolated and the cytochrome c oxidase gene was sequenced to identify the fish species. Our study, conducted from 2022–2023, revealed 18% of salmon samples from both grocery stores and sushi restaurants were mislabeled. While most samples were acquired during the fall months when wild salmon is in season, we still observed a high salmon mislabeling rate. Unlike grocery stores, Seattle sushi restaurants often sold farmed salmon mislabeled as wild salmon. Specifically, substitutions of vendor-claimed wild salmon with farmed salmon occurred in 32.3% of sushi restaurant samples compared to 0% of grocery store samples. Additionally, occurrences of wild salmon being substituted with another salmon species (wild or farmed) occurred in 38.7% of sushi restaurant samples compared to 11.1% of grocery store samples. All salmon substitutions in sushi restaurants harmed the customer financially as they were given a cheaper market-priced fish. In grocery stores, however, we did not detect significant economic loss to customers due to salmon mislabeling. Taken together, it is important to continue to develop and enforce legislation in Washington State that prevents salmon fraud and promotes ecologically sustainable fishing practices. [ABSTRACT FROM AUTHOR]

Salmonid fish are known to have the potential to induce allergies. Therefore, from the perspective of food safety, it is crucial to assess the contamination of salmonid components in food. In this study, we aimed to develop a highly sensitive detection method using real-time polymerase chain reaction (PCR) for the accurate identification of minute quantities of salmonid DNA in food. To enhance detection sensitivity, three types of repetitive DNA elements with high copy numbers per genome, that is, the Hpa I element, ribosomal DNA (rDNA), and mitochondrial DNA (mtDNA), were initially selected as candidate PCR targets. The copy numbers of these elements across 11 salmonid species were quantified using real-time PCR. The salmonid-specific retrotransposon with the highest copy number, Hpa I, was chosen as the target gene for the highly sensitive salmonid detection method. By conducting real-time PCR using DNA templates from 11 salmonid species and 71 non-salmonid species, the method demonstrated exceptional specificity to salmonids. By optimizing the conditions of the real-time PCR, the detection limit of salmonid DNA reached 20 fg, and the limit remained unaffected even in the presence of mixed DNA from other species. Compared with existing detection methods for salmonid fish, our approach signifies a substantial 250-fold advancement in detection limits. Application of our method to 16 processed foods containing components of salmonid fish and 5 processed foods devoid of salmonid fish components resulted in successful determination of the presence or absence of salmonid fish in all tested food samples. [ABSTRACT FROM AUTHOR]

Escape of genetically distinct farmed Atlantic salmon (Salmo salar) raises concerns about their potential interactions with wild populations and the disruption of local adaptation through genetic admixture. It is often unknown whether genetic origin or common domestication effects will have a greater influence on consequences posed by escaped farmed fish. Previous work showed that domestication could have prevalent effects on the behaviour and growth of farmed salmon, independent of their genetic origin. Yet, less is known whether this extends more broadly to gene expression, particularly at critical early life stages. Thus, we compared the expression of 24 transcripts related to the immune response, structural maintenance, stress response and iron metabolism among distinct farmed (North American [NA] and European [EO]), wild (Newfoundland) and F1 hybrid salmon at hatching under controlled conditions using qPCR analyses. A slightly higher number of transcripts were differentially expressed between the wild population relative to EO (i.e. atf3a, atf3b, bnip3, trim37a, ftm, hp and gapdh) than NA‐farmed salmon (i.e. epdl2, hba1a, hba1b, hbb4 and ftm). The most differences existed between the two farmed strains themselves (11 of 24 transcripts), with the fewest differentially expressed transcripts found between the F1 hybrids and the domesticated/wild maternal strains (4 of 24 transcripts). Interestingly, despite similarities in the overall extent of gene expression differences among cross types, the expression patterns differed relative to a past study that compared fry from the same cross types at the end of yolk sac absorption. Overall, our findings suggest that interbreeding of escaped farmed salmon with wild Newfoundland populations would alter transcript expression levels and that developmental stage influences these changes. [ABSTRACT FROM AUTHOR]

Spawning Pacific salmon (Oncorhynchus spp.) provide marine‐derived resources (MDR) to freshwater food webs in the form of eggs, flesh and maggots that consume salmon carcasses, all of which positively impact stream‐dwelling fish growth. Pink salmon (O. gorbuscha) are widely distributed throughout coastal catchments along the North Pacific Ocean and display increased spawning abundances in odd years, owing to a fixed 2‐year life history. While many studies have found that foraging and growth of stream‐dwelling salmonids are improved by increased adult salmon spawning abundance, few studies have investigated the importance of alternating pink salmon spawning abundance between years.Here, we examined how patterns of pink salmon spawning abundance impact the foraging and growth of juvenile coho salmon (O. kisutch). First, we used bioenergetic simulations to generate a hypothesis that coho salmon growth would increase during odd relative to even years. We then collected empirical juvenile coho salmon diet and growth data from a Southeast Alaska catchment in 2021 (pink salmon spawning) and 2022 (no pink salmon spawning). Field data were compared against simulation predictions to understand impacts of biennial pink salmon spawning patterns on juvenile coho salmon growth.Empirical growth data revealed similar patterns to bioenergetic simulations. Age‐1 coho salmon grew 16.6 mm longer and 5.5 g heavier on average in 2021 compared to 2022. Age‐0 coho salmon displayed minor growth differences between years.These results support bioenergetic model predictions and suggest that patterns of pink salmon spawning abundance can impart interannual growth disparities to juvenile coho salmon. Moreover, we show that distinct spawning characteristics of Pacific salmon species are important when understanding patterns of MDR transfer and growth responses in stream fishes. [ABSTRACT FROM AUTHOR]

Introduction: Hypoxia has a teratogenic effect on the fish during embryonic development. Nevertheless, the effects on the larval stage are not yet known. Therefore, the aim of this study was to assess the effects of hypoxia on the number of neurons and their apoptotic rate in the spinal cord of Salmo salar alevins after hatching. Methods: We used a total of 400 alevins, establishing both hypoxia and control (normoxia) groups (n = 8), considering post-hatching days 1, 3, 5, and 7, each with 50 individuals. Transversal sections of 50 mm thickness were cut from the alevin body. We performed cresyl-violet staining and counted the spinal cord neurons. Also, immunohistochemistry for HIF-1a and caspase-3 were used. For statistical analysis ANOVA one-way and Tukey's Test were used. Results: HIF-1a was expressed in spinal neurons in both the hypoxic and normoxic groups, with the former being significantly higher. Both the hypoxic and normoxic groups evidenced the process of neuronal apoptosis, with the hypoxic groups demonstrating a higher significance. The number of neurons in the spinal cord was significantly lower in the hypoxic group. Discussion:We found that when oxygen levels in the aquatic environmentwere low in Salmo salar farming alevins post-hatch, the number of spinal neurons dropped by half. These results contribute to increasing our knowledge of the biological development of salmon, in particular the genesis of the spinal cord, and the effects of hypoxic conditions on the development of this structure of the nervous system. [ABSTRACT FROM AUTHOR]

Over the years, human impacts have resulted in great losses in riverine biodiversity. Ecosystem restoration could contribute to reversing this trend. Ecosystem restoration, however, involves many actors and perspectives and is, therefore, a complex governance challenge. So far, this governance challenge has been understudied, and it is not clear which governance conditions may contribute to a successful restoration of riverine ecosystems. This paper addresses this knowledge gap by developing an assessment framework that is applied in a critical case study. We first reviewed scientific papers and compiled governance conditions found in an assessment framework. The framework is tested and refined by conducting a case study on the ecosystem restoration process coordinated by the International Commission for the Protection of the Rhine. This process aims to bring back the Atlantic salmon and other species in the basin. Our analysis revealed that despite efforts to reintroduce Atlantic salmon, a self-sustaining population is not present in the basin. Moreover, the governance structure in the basin only meets 13 out of 23 governance conditions. Challenges identified include slow decision-making, ambiguity in responsibilities, and limited financial incentives. Based on our case study, we have refined the framework to tailor it more for future research and policy development. [ABSTRACT FROM AUTHOR]

Water diversions that support agricultural and municipal use result in fish mortality through entrainment and impingement. Additionally, this infrastructure may attract both predators and prey fishes, thereby increasing predation rates and prey mortality near these anthropogenic contact points. The Sacramento–San Joaquin Delta (the Delta) in California's Central Valley is a tidal freshwater ecosystem that exports large volumes of water for municipal and agricultural use while at the same time providing valuable migratory and rearing habitat for imperilled fishes. Emigrating juvenile salmonids experience high mortality in the Delta, with predation by non‐native fishes contributing substantially.Therefore, this study had three main objectives. First, we determined if small water diversions aggregated piscivorous fishes like other similar structures in freshwater ecosystems. Second, we determined how small diversions may influence juvenile salmon predation risk in conjunction with other known predation risk factors (e.g. predator abundance, temperature and depth). Third, we assessed the predator assemblage, abundance and distribution to determine the likely predator composition in objectives one and two.Throughout the spring of 2021, we used ARIS (adaptive resolution imaging sonar; Sound Metrics) sonars to compare piscivore abundance at 30 water diversions in the north Delta to shorelines adjacent to diversions that did not contain these structures. We used predation event recorders (PERs) to assess the predation risk juvenile salmonids were exposed to, with linear distance (m) from diversions, and other predation risk factors in the north Delta. Finally, we used a boat electrofishing survey to determine the piscivore assemblage and compare spatial trends in black bass (Micropterus spp.) CPUE and relative abundance throughout these waterways.Piscivore abundance was greater near small water diversions than at adjacent shorelines and the predation risk of juvenile salmonids increased with diversion proximity. Additionally, predation risk increased with increasing piscivore abundance and decreasing water depth. The north Delta predator assemblage was dominated by black basses (Micropterus spp.), which likely drove the negative relationship of predation risk with water depth, given habitat requirements of these species. Furthermore, increasing smallmouth (Micropterus dolomieu) and spotted bass (Micropterus punctulatus) abundance in our northern study sites may have weakened temperature effects on predation, given metabolic requirements of these species.Our work demonstrated that small water diversions are likely to increase mortality of endangered salmonids, and that the north Delta predator assemblage was different than recorded by previous work in this system, changing predation risk factors. Although more work is needed to determine the population level impacts of diversions, the ubiquitous distribution of these structures warrants management solutions to reduce mortality from this source.These results indicate that in addition to entrainment and impingement, water diversions may increase mortality of small‐bodied fishes by attracting predators and elevating predation risk. Given the continual human demand for freshwater, predator–prey interactions should be considered along with entrainment and impingement when assessing intake infrastructure mitigation, especially when diversions co‐occur along migratory routes and essential habitat of imperilled fishes. [ABSTRACT FROM AUTHOR]

Current procedures to establish vertebral column regionalization (e.g., histology) in fish are time consuming and difficult to apply. The aim of this study was to develop a more rapid and accurate radiology‐based method for Atlantic salmon (Salmo salar). A detailed analysis of 90 animals (4 kg) led to the establishment of region‐specific radiographic hallmarks. To elucidate its transferability to other salmonid species, radiography was carried out in brown trout (Salmo trutta), Arctic char (Salvelinus alpinus), rainbow trout (Oncorhynchus mykiss), pink salmon (Oncorhynchus gorbuscha), and Chinook salmon (Oncorhynchus tshawytscha). This method was also evaluated for whole ungutted fish. The vertebral column of Atlantic salmon can be subdivided into five regions (R1–R5) based on anatomy: postcranial (R1, V1, and V2), abdominal (R2, V3–V26), transitional (R3, V27–V36), caudal (R4, V37–V53), and ural (R5, V54–V59). The following specific radiographic hallmarks allow the identification of regions: (i) lack of ribs in R1, (ii) modified parapophysis of the first vertebra of R3, (iii) prominent hemal spine of the first vertebra of R4, and (iv) the separated hemal spine of the most cranial pre‐ural vertebra of R5. These hallmarks were all transferable to the other salmonid species assessed. The results include a further description of various region‐specific characteristics in Atlantic salmon. The method was found applicable for sedated/whole ungutted fish, verifying it as quick and easy compared to other regionalization methods. The regions defined by radiology in this study agree with the vertebral column regions recently defined for Chinook salmon (O. tshawytscha). Thus, and considering the results of this study on various salmonid species, the currently developed regionalization protocol can be generally used for salmonids. [ABSTRACT FROM AUTHOR]

According to Chilean legislation, a salmonid concession holder must choose between two mutually exclusive stocking density systems: Stocking Reduction Percentage (SRP) or Stocking by Density. This study identifies the main determinants in the choice of stocking system and estimates their marginal effects. The results suggest that if the previously stocked species is Atlantic salmon (Salmo salar), the probability of stocking by SRP increases by 36.6%. On the other hand, a high and medium environmental rating (determined according to mortality, use of antibiotics, and pharmacological products during the previous productive cycle) has a negative effect. At the same time, a lower rating positively impacts the choice of SRP. Whatever the selection, obtaining a poor biosecurity classification should not necessarily be interpreted as a sanction due to the fact the salmonid concession holder simply has the option to choose the other method, which would deem the policy of regulatory authority meaningless from this perspective. [ABSTRACT FROM AUTHOR]

The mortality of Atlantic salmon is one of the main challenges to achieving its sustainable production. This sector benefits from generating many data, some of which are collated in a standardized way, on a monthly basis at site level, and are accessible to the public. This continuously updated resource might provide opportunities to monitor mortality and prompt producers and inspectors to further investigate when mortality is higher than expected. This study aimed to use the available open-source data to develop production cycle level dynamic linear models (DLMs) for monitoring monthly mortality of maricultured Atlantic salmon in Scotland. To achieve this, several production cycle level DLMs were created: one univariate DLM that includes just mortality; and various multivariate DLMs that include mortality and different combinations of environmental variables. While environmental information is not collated in a standardized way across all sites, open-source remote-sensed satellite resources provide continuous, standardized estimates. By combining environmental and mortality data, we seek to investigate whether adding environmental variables enhanced the estimates of mortality, and if so, which variables were most informative in this respect. The multivariate model performed better than the univariate DLM (P = .004), with salinity as the only significant contributor out of 12 environmental variables. Both models exhibited uncertainty related to the mortality estimates. Warnings were generated when any observation fell above the 95% credible interval. Approximately 30% of production cycles and more than 50% of sites experienced at least one warning between 2015 and 2020. Occurrences of these warnings were non-uniformly distributed across space and time, with the majority happening in the summer and autumn months. Recommendations for model improvement include employing shorter time periods for data aggregation, such as weekly instead of on a monthly basis. Furthermore, developing a model that takes hierarchical relationships into account could offer a promising approach. [ABSTRACT FROM AUTHOR]

Riverine fishes face many challenges including habitat degradation and climate change, which alter the productivity of the riverscapes in which fish live, reproduce, and feed. Understanding the watershed portfolio of foraging and growth opportunities that sustain productive and resilient fish populations is important for prioritizing conservation and restoration. However, the spatiotemporal distribution and availability of fish food are poorly understood relative to other factors such as abiotic habitat quantity and quality (e.g., water temperature). In this paper, we build on the concept of “foodscapes,” and describe three components of food for fish, including abundance, accessibility, and quality. We then discuss methodological advances to help address three key questions: (1) Why is food availability hard to estimate? (2) What are the consequences of uncertainty in food availability estimates? and (3) What approaches are available or emerging for quantifying food available to fish? To address the first question, we characterize data acquisition and analytical challenges; for the second, we demonstrate the importance of evaluating and communicating potential consequences of uncertainty; and for the third, we posit opportunities for future work. Collectively, we highlight the need for greater appreciation of the role food plays in stream fish conservation, especially given its critical influence on responses to warming temperatures.This article is categorized under: Water and Life > Nature of Freshwater Ecosystems Water and Life > Conservation, Management, and Awareness Water and Life > Methods [ABSTRACT FROM AUTHOR]

We study the effect of stochastic feeding costs on animal-based commodities with particular focus on aquaculture. More specifically, we use soybean futures to infer on the stochastic behavior of salmon feed, which we assume to follow a Schwartz 2-factor model. We compare the decision of harvesting salmon using a decision rule assuming either deterministic or stochastic feeding costs. We identify cases, where accounting for stochastic feeding costs leads to significant improvements as well as cases where deterministic feeding costs are a good enough proxy. Nevertheless, in all of the cases, the newly derived rules show superior performance, while the additional computational costs are negligible. In conclusion, we recommend to use decision rules taking stochastic feeding costs into account. [ABSTRACT FROM AUTHOR]

Antibiotics can be introduced from aquaculture facilities into marine sediments, where they may affect benthic communities and generate antimicrobial resistance (AMR). Antibiotics can be used in tandem with antiparasitics, and the effects of their combined usage could affect AMR patterns and transmit antibiotic resistance genes. This study compiles patterns of antibiotic and antiparasitic drug usage from 2016 to 2021 in British Columbia, New Brunswick, Newfoundland and Labrador, and Nova Scotia (Canada) and compares them internationally. There is an overall reduction in rates of antibiotic use per fish produced in Canadian aquaculture sites from 2016 to 2021. Compared to other salmon-producing countries, Canadian antibiotic rates per tonne of fish are lower than in Chile, but higher, on average, than in Norway and Scotland. Florfenicol (FLO) and oxytetracycline (OTC) are the prevalent antibiotics used in most salmon-producing countries, including Canada. We also note that <30% of sites used two drugs per year and <18% of sites used three drugs, with most of these sites using one antibiotic and one antiparasitic. There is an increase in FLO and a decrease use in OTC use in Canada, which could be positive environmentally considering FLO's lower dose and environmental persistence. The east and west coasts show comparable antibiotic rates, with an average rate of 78 mg/kg in BC and 76 mg/kg in the Atlantic provinces; however, they have differences in the type of antibiotic (average use of OTC: BC 38 mg/kg vs. Atlantic 214 mg/kg; average use of FLO: BC 40 mg/kg vs. Atlantic 10 mg/kg). Other distinctions between coasts include variation in the timing of treatments, with seasonal use in the Atlantic provinces (May–November) and year-round use in BC. This pattern is likely influenced by differences in water temperature and, subsequently, potential susceptibility to aquatic diseases. Disease prevalence and veterinarian choice/preferred treatments are factors that, we hypothesize, may impact treatment choice; however, additional information is required to adequately comment on this point. This data compilation includes spatial descriptions that could be used for area prioritization in future studies. [ABSTRACT FROM AUTHOR]

A healthy skeletal system is fundamental to fish welfare and performance and a key physiological feature of a robust fish. The presence of skeletal deformities in farmed salmonids is a persistent welfare problem in aquaculture, and one which threatens to impede industry growth. Deformities of the fine bones of fish, such as ribs and intermuscular bones (IBs), have received less attention than vertebral body deformities, despite their potential to compromise fish welfare and product quality. IBs, commercially known as pin bones, are small spicule‐like bones embedded in the muscle fillets of salmonids, cyprinids and other basal teleost species. In farmed basal teleosts, they impact fish processing, have negative effects on the economic value of fish and present a potential consumer health concern if ingested. Current understanding of IB development and function in teleosts has mostly relied on morphological research. More recently, advances in our understanding of molecular mechanisms of IB development in cyprinids have been made, largely due to the exploration of breeding IB‐free fish for use in aquaculture. In this review, we explore the existing literature on IBs in teleosts, highlight the points of contention within this field of research and identify the significant knowledge gaps about the development and function of salmonid IBs. To our knowledge, there is no available research on the function of IBs and scarce research concerning IB development in salmonids. Future research on teleost IBs would benefit from the use of consistent terminology to facilitate interdisciplinary collaboration and identify research outputs in this field. [ABSTRACT FROM AUTHOR]

Variations in species distribution, population structure, and behavior can provide a portfolio effect that buffers populations against rapid environmental change. Although diversity has been identified as a goal for effective resource management and genetic and demographic tools have been developed, life history remains challenging to quantify. In this study, we demonstrate a novel metric of life history diversity using telemetry data from migratory fish. Here, we examined diversity in the outmigration behavior of juvenile Chinook salmon (Oncorhynchus tshawytscha) released in the Sacramento River, California, between 2007 and 2017. In this synthesis, we examined a wide variety of landscape and demographic drivers at high resolution by incorporating many individual telemetry studies, with variability in release location by year, environmental conditions, and all runs of salmon that are present in the watershed. When years were grouped by shared hydrologic conditions, variation in travel time was significantly higher in wet years. Further, our model showed a negative effect of warm temperatures at low flows on the variation in migration movements. This suggests that enhanced hydrologic connectivity increases the variation in migration time, a representation of habitat complexity and biocomplexity, despite the degraded state of this watershed and the weakened state of these populations. Variation in migration behavior could buffer species from current and future environmental changes, such as climate effects on precipitation and temperature. Hence, behavioral metrics generated from telemetry studies can be used to understand life history diversity and the potential effects of environmental fluctuations. [ABSTRACT FROM AUTHOR]

The last populations of Danube salmon (Hucho hucho) in Croatia are found in the Kupa and Una rivers. However, the size of the suitable area that could serve as the best spawning ground for the remnant Danube salmon population in these rivers is not known. This study aimed to leverage anglers' experiences to determine the sections of the Una and Kupa rivers where the last populations of Danube salmon (Hucho hucho) in Croatia are most abundant, identify potential spawning sites and assess threats that could impact the species' existence. The Kupica river emerged as a tributary of the Kupa river with a large Danube salmon population in Croatia. Experienced divers conducted three dives along a 350‐m transect in the Kupica river, estimating a total of 13 Danube salmon individuals ranging from 50 to 115 cm in total length, in pool and run mesohabitat types. In the Kupa and Kupica rivers, the survey identified 25 Danube salmon spawning sites. The primary local threats identified for the Danube salmon population include small hydropower plants, the construction of a radioactive waste disposal site, water abstraction, the removal of riparian vegetation, overfishing and climate change. Based on the results of this study, we strongly recommend the implementation of protective measures against these threats and the establishment of an ichthyological reserve specifically for Danube salmon in the Kupica river. This recommendation aligns with the EU Biodiversity Strategy, emphasizing the need to identify designated areas by 2030. [ABSTRACT FROM AUTHOR]

The salmon industry's challenges with skin health and sea lice emphasize the necessity for fish-sensitive measures like functional nutrition to boost skin health and fish welfare. The present study investigated the efficacy of krill meal (KM) for skin mucosal health and sea lice in Atlantic salmon (170 g). Following an 8-week feeding period, in duplicate tanks, on test diets (8% KM, 12% KM, and the control group), fish underwent a 2-week sea lice challenge, reaching 350 g. The 8% KM diet group had thicker skin epithelium (72.3 µ) compared to the 12% KM (51.3 µ) and the control groups (43.8 µ) after 8 weeks. Additionally, skin mucosal health parameters—cell size (208 µ2), cell density (25.2%), and defense activity (1.19)—were significantly enhanced with 8% KM compared to the 12% KM (cell size: 162.3 µ2, cell density: 17%, defense activity: 1.04) and the control group (cell size: 173.5 µ2, cell density: 16.4%, defense activity: 0.93). Furthermore, fish fed with 8% KM significantly showed the lowest sea lice, along with reduced cell size while maintaining a high abundance of skin mucous cells, suggesting efficient turnover of the skin mucosal layer to remove sea lice effectively. This study highlights the potential of KM as part of a functional nutrition strategy to enhance skin mucosal health and mitigate sea lice challenges. [ABSTRACT FROM AUTHOR]

Feeding habits of salmon are examined on the data from “Trophology” and “Zooplankton” databases for 1988–2023, taking into account calendar dates and spatial localiza tion of the salmon size classes. The dominant zooplankton species and groups in salmon food are defined and their availability in terms of time and depth of habitat is determined. Daily rhythm of salmon feeding is found uniform for all size groups. The areas and time (months) of maximum concentrations of salmon are determined, by size groups, and those ones are considered as the areas and periods of their most active consumption. A trophological calendar is constructed to show where, when, and what type of food is consumed by certain species and size group of salmon. Daily food rations are calculated for all salmon species and size groups. The rations are similar with those in the Bering Sea, with small differences possibly caused by different structure of the plankton communities. The application tables are compiled for operational calculations of total food consumption by size groups of salmon species with a predominant zooplankton prey (pink, chum and sockeye). According to the forecast published at VNIRO website vniro.ru, the salmon catch in the Far Eastern basin will decrease by more than 2 times in 2024, primarily due to pink salmon. In this case, significant reduction in salmon pressure on plankton community can be expected.

Aquatic ecosystems world-wide are being irreversibly altered, suggesting that new and innovative management strategies are necessary to improve ecosystem function and sustainability. In river ecosystems degraded by dams environmental flows and selective withdrawal (SWD) infrastructure have been used to improve habitat for native species. Yet, few studies have quantified nutrient and food web export subsidies from upstream reservoirs, despite their potential to subsidize downstream riverine food webs. We sampled nutrient, phytoplankton, and zooplankton concentrations in outflows from the Shasta-Keswick reservoir complex in Northern California over a 12-month period to understand how SWD operation and internal reservoir conditions interact to influence subsidies to the Sacramento River. We found that nutrients, phytoplankton, and zooplankton were continuously exported from Shasta Reservoir to the Sacramento River and that gate operations at Shasta Dam were important in controlling exports. Further, our results indicate that gate operations and water-export depth strongly correlated with zooplankton community exports, whereas internal reservoir conditions (mixing and residence time) controlled concentrations of exported zooplankton biomass and chlorophyll a. These results demonstrate that reservoirs can be an important source of nutrient and food web subsidies and that selective withdrawal infrastructure may provide a valuable management tool to control ecosystem-level productivity downstream of dams.

Automatic fish length estimation is essential for modern aquaculture. Occlusion and body bended make accurate fish length estimation challenging in intensive aquaculture environments. Aiming at these issues, this study proposes a fish length estimation scheme based on cross-modal feature fusion Mask R-CNN (CMFF Mask R-CNN) and point cloud normalization segmentation transformation. To eliminate fish which are incomplete in binocular images due to occlusion and extract masks of fish which are complete in binocular images, a cross-modal feature fusion module is designed and embedded into Mask R-CNN to aggregate boundary features of fish from RGB and disparity into unified feature maps. The feature maps help remove incomplete fish and improve the accuracy of complete fish mask boundary. A fish length estimation algorithm based on point cloud normalization segmentation transformation is designed to reduce the length estimation error caused by bending. After plane and ellipse fitting transformation, the fish contour point cloud is then transformed into a unified space for K-means clustering segmentation. The sum of each segment is the fish length. Experimental results show that the mean relative error of the salmon length estimation is less than 5%. Moreover, the generalizability experiments show that the average relative error of the proposed method for the other freshwater fish species is less than 5%. This indicates that the proposed method for fish length estimation could be applied in aquaculture. [ABSTRACT FROM AUTHOR]

Despite salmon (Salmo salar L.) being an important fish in the Baltic Sea ecosystem and its fisheries, knowledge about the parasite fauna of this top predator is scarce. The Anisakidae nematodes (Anisakis spp., Pseudoterranova spp., Contracaecum sp.) found in Baltic Sea fish species are zoonotic parasites that are hazardous to human health. Due to the marked increase in the numbers of grey seal (Halichoerus grypus), the definitive host of Contracaecum sp. and Pseudoterranova spp., increased dispersion of these parasites has been observed in recent years. The aim of our study was to investigate salmon caught in Polish marine waters for the presence of Anisakidae nematodes. Parasitological inspection of the body cavities of 89 individual salmon was conducted in 2012 and revealed the presence of a Pseudoterranova sp. L3 larva. The presence of the parasite is reported here for the first time in the muscle tissue of salmon from the Baltic Sea. The presence of Anisakidae nematodes in commercially important fish species may have implications for human health since these parasites pose a risk of anisakidosis.

Abstract Background Salmonid species have followed markedly divergent evolutionary trajectories in their interactions with sea lice. While sea lice parasitism poses significant economic, environmental, and animal welfare challenges for Atlantic salmon (Salmo salar) aquaculture, coho salmon (Oncorhynchus kisutch) exhibit near-complete resistance to sea lice, achieved through a potent epithelial hyperplasia response leading to rapid louse detachment. The molecular mechanisms underlying these divergent responses to sea lice are unknown. Results We characterized the cellular and molecular responses of Atlantic salmon and coho salmon to sea lice using single-nuclei RNA sequencing. Juvenile fish were exposed to copepodid sea lice (Lepeophtheirus salmonis), and lice-attached pelvic fin and skin samples were collected 12 h, 24 h, 36 h, 48 h, and 60 h after exposure, along with control samples. Comparative analysis of control and treatment samples revealed an immune and wound-healing response that was common to both species, but attenuated in Atlantic salmon, potentially reflecting greater sea louse immunomodulation. Our results revealed unique but complementary roles of three layers of keratinocytes in the epithelial hyperplasia response leading to rapid sea lice rejection in coho salmon. Our results suggest that basal keratinocytes direct the expansion and mobility of intermediate and, especially, superficial keratinocytes, which eventually encapsulate the parasite. Conclusions Our results highlight the key role of keratinocytes in coho salmon’s sea lice resistance and the diverged biological response of the two salmonid host species when interacting with this parasite. This study has identified key pathways and candidate genes that could be manipulated using various biotechnological solutions to improve Atlantic salmon sea lice resistance.

Anglers are now seasonally banned from the southern Ontario town's Chinook salmon run, casting them out to nearby waterways with fewer fish and less [...]

The last open-net pen salmon farms in B.C. have until July 2029 to figure out a different way of doing business. Environmental advocates say the shift is long overdue but [...]

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In recent years, the salmon farming industry has grown significantly worldwide, and in the Faroe Islands, it has become a major industry with an annual production of over 94,000 tonnes, yielding 24% of the GDP. According to environmental regulations, the ocean floor is monitored during every production cycle at all farming sites, involving macrofaunal, sensory, and chemical analyses. However, the impact of farming activity on microorganisms in the Faroe Islands remains unknown. This study aimed to assess the impact of Atlantic salmon farming on benthic microbial communities, giving a better understanding of the effects on the foundation of the benthic food web and to assess if these are more prone to environmental impact than traditional macrofaunal biomonitoring. Sediment cores were sampled along a transect from directly below the salmon cages to a background reference site. The sampling occurred prior to the release of salmon into the cages ('before stocking') and immediately before the salmon were harvested ('peak biomass'). The 16S rRNA (V4-V5) gene was sequenced on an Illumina MiSeq from our sediment samples at the surface, 3 cm, and 10 cm depth. Significant shifts in microbial community composition were observed between 'before stocking' and 'peak biomass', as well as between different depth layers. Microbial diversity increased with increasing distance from the cages and was at its highest 'before stocking', indicating a significant impact of the salmon farming on the microbial community structure. In contrast to the regularly executed environmental monitoring, the results from this study showed an impact on the sediments by the salmon farming, underlining the powerful alternative of DNA-metabarcoding when biomonitoring an aquaculture area. [ABSTRACT FROM AUTHOR]

This study presents an Agent-Based Model (ABM) simulation to assess the impact of varying migration routes on sea lice (Caligus clemensi) infestation levels in juvenile wild sockeye salmon (Oncorhynchus nerka) in the Discovery Islands, British Columbia, Canada. This research highlights the importance of migratory routes in determining the extent of exposure to sea lice originating from nearby salmon farms. Three northward out-migration routes were modelled, each exposing the fish to different levels of infestation pressure based on proximity to salmon farms. The ABM incorporates spatially explicit migration patterns of juvenile sockeye salmon using a detailed raster map of the Discovery Islands. Key variables such as swimming speed, progression rate, and infestation levels were integrated into the model, offering a comprehensive analysis of migration and infestation dynamics. The study revealed that infestation rate is highly variable, depending on migration routes. Specifically, salmon traveling longer migration routes with lower infestation pressure may experience higher sea lice loads compared to those on shorter routes with higher infestation pressure. This underscores the role of low infestation pressures and the critical influence of swimming speed, which affects exposure time, and thus infestation rates. Additionally, the study conducted a sensitivity analysis to understand the influence of various parameters on infestation rates. This analysis highlighted the importance of swimming speed and progression rate, particularly in routes closer to the farms. The findings suggest that slower swimming speeds and meandering routes increase exposure to lice, thereby elevating infestation levels. The research contributes to understanding the dynamics of sea lice transmission and its relationship with salmon migration patterns. It underscores the necessity of considering migratory routes and farm proximity in managing and mitigating the impact of sea lice infestation on wild salmon populations. This study's insights are crucial for developing strategies to balance aquaculture practices with the conservation of wild salmon. [ABSTRACT FROM AUTHOR]

Fish scale microchemistry can be used to make life‐history inferences, although ecological studies examining scale composition are relatively rare. Salmon scales have an external layer of calcium phosphate hydroxyl apatite (HAP). The structure, hardness, and calcium content of this layer have been shown to vary within and between species. This variation may lead to misinterpretation of trace element profiles. This study uses backscatter scanning electron microscopy with electron dispersive spectrometry to compare scales from salmon populations and to present a more detailed analysis of scale HAP than was previously available. Our findings extend the range of salmon populations for which HAP Ca is available and confirm previous findings that the HAP Ca is relatively invariable within this species. [ABSTRACT FROM AUTHOR]

Salmon, rich in protein and omega-3 fatty acids, has a short shelf life of 1 to 3 days when stored at 2 to 8 °C. Freezing, used for long-term preservation, often results in ice crystal formation. Ice crystals can cause structural damage, leading to cell wall rupture, which can affect the texture and cause nutrient loss. Ultimately, this process reduces the overall quality of the salmon. Supercooling, which cools food below its freezing temperature without forming ice crystals, offers an alternative. This study investigated the effects of oscillating magnetic fields (OMFs) and pulsed electric fields (PEFs) on ice crystal formation during salmon supercooling. The results showed that using OMFs and PEFs in supercooling reduced the storage temperature of salmon, maintaining a similar thiobarbituric acid reactive substances (TBARS) value to that of frozen and refrigerated samples. There was no significant difference in meat color between the fresh and frozen samples, and drip loss weight was comparable between the fresh and supercooled samples. The microbiological counts were the lowest in the supercooled samples compared to the frozen and refrigerated ones. These findings suggest that supercooling storage with OMFs and PEFs can mitigate quality degradation in salmon typically associated with freezing. [ABSTRACT FROM AUTHOR]

The potential for infectious salmon anemia virus (ISAV)—an internationally regulated pathogen of salmon—to transmit vertically from parent to offspring is currently unclear. While the highly virulent ISAV phenotype known as ISAV-HPRΔ has been observed intra-ova, evidence for vertical transmission of the avirulent ISAV phenotype known as ISAV-HPR0 is lacking. In this study, we identified ISAV-HPR0-infected Atlantic salmon broodstock during spawning within a government research recirculating aquaculture facility using qPCR. Eggs and milt from infected brood were used to initiate 16 unique family dam-sire crosses from which 29–60 fertilized eggs per cross were screened for ISAV using qPCR (limit of detection ~100 virus genome copies/egg). A portion of eggs (~300) from one family cross was hatched and further reared in biosecure containment and periodically screened for ISAV by gill clipping over a 2-year period. ISAV was not detected in any of the 781 eggs screened from 16 family crosses generated by infected brood, nor in 870 gill clips periodically sampled from the single-family cohort raised for 2 years in biocontainment. Based on these findings, we conclude that ISAV-HPR0 has a limited likelihood for vertical parent-to-offspring transmission in cultured Atlantic salmon. [ABSTRACT FROM AUTHOR]

We hypothesized that removing water from fish muscle homogenate by freeze‐drying might be a cost‐effective way to stabilize nutrients and allow higher temperatures for long‐term frozen storage prior to analytical measurements. To test our hypothesis, fish muscle fillets from lipid‐rich farmed Atlantic salmon (n = 5) and lean wild‐caught European plaice (n = 5) were homogenized and fresh‐frozen at −20 and −80°C. A subset of these samples was freeze‐dried prior to further frozen storage at the respective temperatures. Using validated methods, vitamins, amino acids, and fatty acids were measured after a short time of storage (starting point) and up to 1 year (endpoint), with intermediate analytical checkpoints of 1, 3, and 6 months. Trends in the degradation of certain nutrients during the different frozen storage conditions are discussed. In general, by freeze‐drying fish homogenate samples prior to frozen storage at −20°C for up to 1 year, amino acids, vitamins, and fatty acids were stabilized in both salmon and plaice when compared to wet‐frozen storage of the same samples, and storage at −80°C did not improve preservation of the freeze‐dried samples. For wet‐frozen samples, −80°C would be recommended for 1‐year storage of fillet homogenate samples, even though several nutrients preserved well at −20°C. Practical Application: We present individual nutrient stability profiles in muscle homogenates from fatty fish (salmon) and lean fish (plaice) during different frozen storage conditions over time. Based on these data, freeze‐drying followed by frozen storage at −20°C for at least 1 year could be applied prior to analyses of amino acids, fat‐soluble vitamins, water‐soluble vitamins, and fatty acids. Of note is that freeze‐drying followed by frozen storage before analysis led to slightly increased measurements of several fatty acids in plaice samples, possibly attributable to an increase in dry weight or an enhancement in extraction efficiency through freeze‐drying. [ABSTRACT FROM AUTHOR]

Oregon ash (Fraxinus latifolia Benth.) wetlands and riparian forests are an important economic, cultural, and ecological resource in the Pacific Northwest, USA, and are threatened by the invasive insect, emerald ash borer (Agrilus planipennis Fairmmaire) (EAB). Following the discovery of EAB in Forest Grove, Oregon in June of 2022, it is predicted that EAB-induced ash mortality will alter vegetation communities and modify hydrology of wetlands and streams in the Pacific Northwest. Of primary concern is an increase in solar loading of already degraded waterways and wetlands that support Endangered Species Act-listed salmonids and other cold-water species following canopy dieback of Oregon ash. Our study, which began before the first detection of EAB on the West Coast, models potential impacts of EAB-mediated Oregon ash canopy loss to temperature-related water quality on two waterways in the vicinity of Portland, Oregon. Our results indicate a significant increase in solar loading with likely negative impacts to Endangered Species Act-listed salmonids, other aquatic wildlife, and associated habitat. We forecast greater impacts to these resources outside our study scope and include considerations for entities with water quality-related regulatory obligations. [ABSTRACT FROM AUTHOR]

Anadromous Pacific salmon (genus Oncorhynchus) are known for homing behavior to their natal rivers based on olfactory imprinted memories during seaward migration. The SNARE complex is a regulator of vesicle exocytosis from the presynaptic membrane. Our previous study suggested that its component genes (Snap25, Stx1, and Vamp2) are more highly expressed in the olfactory nervous system (ONS) during the migration stages associated with olfactory imprinting in the evolutionary species of Pacific salmon, such as chum (O. keta) and pink (O. gorbuscha) salmon. Masu salmon (O. masou) has a significantly different life history from these species, living longer in rivers and being a more primitive Pacific salmon species. In this study, the transcription of snare mRNAs in the ONS was analyzed using mainly male wild masu salmon. Five cDNAs encoding masu salmon SNAREs, which are well conserved among vertebrates, were isolated and sequenced. Each snare mRNA was highly expressed in age 1+ (yearling) parr prior to smoltification, particularly in the olfactory bulb. Their transcription status was significantly different from that of chum and pink salmon, which showed high expression in earlier under-yearling juveniles. The present results and our previous studies indicate that snare mRNAs are highly transcripted until the seaward migration, reflecting neural development and neuroplasticity of the ONS for olfactory imprinting. [ABSTRACT FROM AUTHOR]

Background: Salmonid species have followed markedly divergent evolutionary trajectories in their interactions with sea lice. While sea lice parasitism poses significant economic, environmental, and animal welfare challenges for Atlantic salmon (Salmo salar) aquaculture, coho salmon (Oncorhynchus kisutch) exhibit near-complete resistance to sea lice, achieved through a potent epithelial hyperplasia response leading to rapid louse detachment. The molecular mechanisms underlying these divergent responses to sea lice are unknown. Results: We characterized the cellular and molecular responses of Atlantic salmon and coho salmon to sea lice using single-nuclei RNA sequencing. Juvenile fish were exposed to copepodid sea lice (Lepeophtheirus salmonis), and lice-attached pelvic fin and skin samples were collected 12 h, 24 h, 36 h, 48 h, and 60 h after exposure, along with control samples. Comparative analysis of control and treatment samples revealed an immune and wound-healing response that was common to both species, but attenuated in Atlantic salmon, potentially reflecting greater sea louse immunomodulation. Our results revealed unique but complementary roles of three layers of keratinocytes in the epithelial hyperplasia response leading to rapid sea lice rejection in coho salmon. Our results suggest that basal keratinocytes direct the expansion and mobility of intermediate and, especially, superficial keratinocytes, which eventually encapsulate the parasite. Conclusions: Our results highlight the key role of keratinocytes in coho salmon's sea lice resistance and the diverged biological response of the two salmonid host species when interacting with this parasite. This study has identified key pathways and candidate genes that could be manipulated using various biotechnological solutions to improve Atlantic salmon sea lice resistance. [ABSTRACT FROM AUTHOR]

Large dam removal is being used to restore river systems, but questions remain regarding their outcomes. We examine how the removal of two large dams in the Elwha River, coupled with hatchery production and fishing closures, affected population attributes of Chinook salmon (Oncorhynchus tshawytscha) and steelhead (O. mykiss). Initial responses by returning adult Chinook salmon and steelhead was an increase in the number and spatial extent of natural and hatchery origin fish. Although few naturally produced juvenile Chinook salmon and steelhead outmigrants were observed prior to and during dam removal, abundances increased three years after adult fish passage was restored, suggesting that impacts due to downstream sedimentation after dam removal were reduced. The Chinook salmon population demographics remain dominated by hatchery production, while increases in winter steelhead abundance included both hatchery and natural-origin spawners. The spatial expansion of winter steelhead upstream of former dam sites was predominantly by natural-origin spawners. We also observed a natural "reawakening" of summer steelhead that were in part derived from an up-river resident population that returned to the Upper Elwha. Our results showed that a combination of habitat, hatchery, and harvest actions can result in positive responses for salmonid populations. [ABSTRACT FROM AUTHOR]

In Japan, stocked chum salmon (Oncorhynchus keta) fry may have become the perfect prey for non-native brown trout (Salmo trutta), which are popular targets of anglers. If this is the case, fry stocking which is intended to boost commercial fishing may be helping to sustain the populations of an invasive predator. We used dietary and biochemical analyses to examine whether brown trout quickly restore their nutritional status following wintertime declines by preying upon chum salmon fry that are stocked in spring. We targeted six rivers in Hokkaido, Japan, three with fry stocking and three without. Changes in brown trout condition factor, triglyceride contents in muscle and serum, serum insulin-like growth factor-1 (IGF-1; an indicator of short-term growth), and docosahexaenoic acid (DHA; an essential fatty acid abundant in fish) content in muscle were examined between before stocking and during the stocking period in the six rivers. Dietary analysis showed that brown trout preyed on fry during the stocking period in all stocked rivers. Their nutritional status tended to be higher during the stocking period than before stocking in stocked rivers, but not in unstocked rivers. These results suggest that the massive stocking of chum salmon fry provides brown trout with the perfect prey to quickly restore their nutritional status and fuel increased growth; this may therefore be a controversial issue among stakeholders. [ABSTRACT FROM AUTHOR]

Over the last 10 years, the spawning population of invasive pink salmon (Oncorhynchus gorbuscha) has increased in the river systems in northern Norway to a level that is causing concern about their impact on endemic fauna and ecosystem processes. The scale of transfer of pink salmon carcasses into the terrestrial ecosystem is likely to be a key determinant of terrestrial impact. Bears (Ursus sp.) are responsible for most such transfers in North America but are rare in Norway. The white‐tailed eagle (Haliaeetus albicilla) is common however, and a candidate to be a main cause of such transfers. To evaluate this hypothesis, data on the abundance of white‐tailed eagles and pink salmon were collected along the river Skallelv in northern Norway in 2021, a year the pink salmon spawned in the river, and in 2022, a year no pink salmon spawned in the river. The abundance of white‐tailed eagles along the river was much higher the year pink salmon spawned in the river. Furthermore, white‐tailed eagles were observed aggregating and catching pink salmon where and when pink salmon were present at the spawning and post‐spawning stages. Based on our observations, we suggest that the white‐tailed eagle is the main species involved in the transport of pink salmon from the river into the riparian zone in northern Norway and that other scavengers, in particular the red fox (Vulpes vulpes) and common raven (Corvus corax), play an important role in transporting pink salmon carcasses from the riparian zone to the wider terrestrial ecosystem. [ABSTRACT FROM AUTHOR]

Farmed salmon escaping from aquaculture and interbreeding with wild conspecifics pose a significant threat to the genetic integrity of natural salmon populations. Despite advancements in aquaculture security, escape incidents persist, prompting the need for effective mitigation strategies. This study summarizes experiences from efforts to remove escaped farmed salmon over a 12-year period in 63 western Norwegian rivers, using either (1) spearfishing during snorkelling by trained personnel or (2) traditional fishing methods employed by local groups. Recaptured farmed salmon ranged widely in size and included both spawners as well as immature fish, demonstrating that farmed fish entering rivers comprise fish of different ages and escape histories. Traditional fishing by locals recaptured the highest number of farmed fish, while removal during snorkelling in general captured larger and mature fish. On average, 53% of the farmed salmon observed during snorkelling were recaptured. This efficacy was influenced by the number of farmed fish present and the size of the farmed fish. In addition, efficacy increased over time, indicating that the removal team became more efficient. The study underscores that active removal, when executed judiciously, contributes to reducing the ecological risks associated with escaped farmed fish, complementing broader strategies for sustainable aquaculture. [ABSTRACT FROM AUTHOR]

Hatcheries and stocking programs serve a variety of objectives, including the conservation of salmon populations. Much attention has been given to the importance of genetic integrity and adaptive capacity of salmon stocks, particularly as they interact with hatchery‐origin fish. Literature on hatchery and stocking programs has increasingly focused on genetic indicators of quality and success, with genetically 'wild' salmon valued over hatchery‐influenced salmon. However, conservation in the Anthropocene is challenging paradigms of wildness and definitions of conservation success. For salmon populations that exist on the ragged edge of climate change where threats are unlikely to be remediated to the status of ecologies past, definitions of 'wild' and the role of conservation hatcheries and stocking becomes convoluted. If definitions of 'wild' or 'natural' salmon depend on salmon archetypes situated in historic ecologies, then what do salmon futures look like? In that context, we argue to expand from primarily genetic criteria for conservation stocking to additional criteria cognizant of hybrid ecosystems and future human‐salmon relationships. We draw on the concept of adaptive epistemologies within the context of conservation‐oriented hatchery and stocking programs to critically reflect on knowledge paradigms and values that underlie salmon conservation stocking efforts and the changing ecosystems in which they are situated. We critique 'wild' discourses rooted in western thought and make suggestions toward a reimagining of salmon conservation‐via‐hatchery in the Anthropocene that allows for expansive human‐salmon futures. Critically, we conclude with warnings against using the arguments in this paper as social permission to use hatcheries as a conservation panacea. [ABSTRACT FROM AUTHOR]

Many ecosystems have been dramatically affected by non-native species, but not all such species have strong deleterious effects. American shad, Alosa sapidissima, a fish species native to the Atlantic coast of North America, was transplanted to the Pacific coast in the late nineteenth century and quickly colonized many US rivers. Their increased abundance in the Columbia River coincided with declines in native anadromous Pacific salmon and trout, and adult American shad now greatly outnumber returning salmonids. This paper reviews evidence for possible ecological interactions between salmon and American shad across their life histories and habitats. Despite the great abundance of American shad and their apparent overlap in use of Columbia River mainstem habitats, harmful effects on salmon are neither clear from empirical studies nor from ecological principles. Rather, the life histories and habitat use patterns tend to separate spawning adult salmon and their offspring from American shad in space and time. Currently available evidence indicates that this separation results in weak, neutral, uncertain, or offsetting effects on salmon (i.e., a mix of positive and negative interactions). Given the limited research on shad in Pacific ecosystems, several lines of investigation are warranted to advance understanding of their ecology and scope for interactions with native fishes and to support a clearer scientific basis for management decisions regarding American shad. [ABSTRACT FROM AUTHOR]

To achieve better biodiversity outcomes and match local governance capacity, cumulative effects assessment frameworks that combine Indigenous and western knowledge to predict future development impacts on biodiversity are needed.We developed a spatial future‐focused model informed by inclusive elicitation and strategic foresight to assess the regional cumulative effects of development on ecosystem health across the land and sea. We collaborated with three First Nations on the Central Coast of British Columbia, Canada, enabling Indigenous priorities, knowledge and values to drive the process, from the choice of priority ecosystem components (including salmon, herring, seabirds and bears), to identifying future development scenarios (based on forestry, energy/mining, tourism and salmon aquaculture sectors). Bayesian networks were populated with empirical data and expert judgement elicited from knowledge holders to predict the cumulative effects of current and future pressures on species and ecosystems.Under current conditions, the lowest probability of persistence was predicted for Pacific salmon (37%), followed by Pacific herring (43%). Under future conditions, the greatest declines in species health were associated with the intense development of mining, tourism and forestry, with up to a 54% decline from the current baseline health estimates predicted for Marbled Murrelets and old‐growth forest.Future outcomes for overall ecosystem health were predicted to be worst in scenarios with high future forestry activities (>60% decline in some areas). The continuation or development of all four industries resulted in an 8% decline overall in ecosystem health across the Central Coast. In contrast, predicted ecosystem health in the tourism economy scenario increased up to 15% in some marine areas, primarily driven by the removal of salmon aquaculture and forestry activities.Synthesis and applications. Our study demonstrates an inclusive, regional approach to assessing the cumulative effects of future development on coastal species. The novel participatory tools and predictive framework draw upon and interweave multiple forms of knowledge, enabling Indigenous values to drive the process, and appropriately integrate Indigenous knowledge into regional cumulative effects assessment. Our interactive web application provides First Nations partners access to all outputs, supporting Indigenous‐led governance and in situ ecosystem‐based management of their lands and water. [ABSTRACT FROM AUTHOR]

Pacific salmon Oncorhynchus spp. hatcheries in British Columbia (BC) have been the major activity of the Salmonid Enhancement Program since 1977. However, the present diminished abundance of Pacific salmon and loss of fisheries in BC called for a review of hatchery effectiveness. The Pacific Salmon Foundation conducted a review resulting in 15 reports publicly available on the Pacific Salmon Foundation marine science website. The review includes evaluations of effectiveness of hatchery production, evidence of interactions with natural salmon populations (including rebuilding natural populations with hatchery‐produced salmon), and future opportunities via genomics. Beyond the estimation of juvenile production and contribution to catches and spawning escapements, the ability to assess effectiveness was limited. The assessments of interactions provided a few examples of positive outcomes, but most were negative. The lack of comparative assessments in purely wild populations seriously limits interpretations of hatchery–wild interactions. Future evaluations of the hatchery effectiveness require more quantitative and integrated assessments of hatchery and wild salmon, open data sharing for public review or research, and related studies could benefit from application of new genomic technologies. This paper presents recommendations to address these needs and calls for regularized reviews of the Salmonid Enhancement Program and its net value to sustainability of BC's Pacific salmon. [ABSTRACT FROM AUTHOR]

Following a request from the European Commission, EFSA was asked to deliver a scientific opinion on red carotenoid‐rich Paracoccus carotinifaciens NITE SD 00017 for salmon and trout (category: sensory additives; functional group: colourants; substances which when fed to animals add colours to food of animal origin) for the renewal of its authorisation. The applicant provided evidence that the additive complies with the conditions of the authorisation. The Panel concludes that the use of the additive in salmon and trout remains safe for the target species, the consumer and the environment under the authorised conditions of use. When assessing consumer exposure to canthaxanthin and adonirubin at the level of the existing maximum residue limits (MRL) for poultry and the proposed MRL for trout/salmon (5 mg/kg muscle), the exposure of consumers exceeds the acceptable daily intake (ADI) in the population classes toddlers and other children. The Panel considers that there is no need to restrict the use of the additive to fish older than 6 months or of more than 50 g. Red carotenoid‐rich Paracoccus carotinifaciens NITE SD 00017 is not irritant to the skin, but is irritant to the eyes. It is considered a dermal and respiratory sensitiser and any exposure via skin or the respiratory tract is a risk. [ABSTRACT FROM AUTHOR]

Innovatively, four-layer, active biopolymer films based on furcellaran, chitosan and gelatin as well as active compounds (curcumin, capsaicin, AgNPs, montmorillonite and gelatin hydrolysate) were obtained. The films showed strong antioxidant effects. Adding active ingredients caused increased enthalpy change value (ΔH) and thermal stability. The potential application of the film was analysed by storing Atlantic salmon fillets in the material. The films showed an active effect. This effect was the strongest during the first 3 days of storage. Compared to the synthetic LDPE film, the active film showed a total 0.81 log/CFU lower microbial count on the 12th day of storage. Lipid oxidation was not delayed in the salmon. Nonetheless, the results indicate high applicative potential of the composites. [ABSTRACT FROM AUTHOR]