1. Spatial and single-nucleus transcriptomic analysis of genetic and sporadic forms of Alzheimer’s disease
- Author
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Miyoshi, Emily, Morabito, Samuel, Henningfield, Caden M, Das, Sudeshna, Rahimzadeh, Negin, Shabestari, Sepideh Kiani, Michael, Neethu, Emerson, Nora, Reese, Fairlie, Shi, Zechuan, Cao, Zhenkun, Srinivasan, Shushrruth Sai, Scarfone, Vanessa M, Arreola, Miguel A, Lu, Jackie, Wright, Sierra, Silva, Justine, Leavy, Kelsey, Lott, Ira T, Doran, Eric, Yong, William H, Shahin, Saba, Perez-Rosendahl, Mari, Head, Elizabeth, Green, Kim N, and Swarup, Vivek
- Subjects
Biochemistry and Cell Biology ,Genetics ,Biological Sciences ,Brain Disorders ,Human Genome ,Alzheimer's Disease ,Alzheimer's Disease including Alzheimer's Disease Related Dementias (AD/ADRD) ,Neurodegenerative ,Dementia ,Neurosciences ,Acquired Cognitive Impairment ,Aging ,2.1 Biological and endogenous factors ,1.1 Normal biological development and functioning ,Neurological ,Alzheimer Disease ,Animals ,Humans ,Down Syndrome ,Transcriptome ,Mice ,Female ,Gene Expression Profiling ,Disease Models ,Animal ,Male ,Cell Nucleus ,Aged ,Gene Regulatory Networks ,Aged ,80 and over ,Cell Communication ,Alzheimer’s Biomarkers Consortium–Down Syndrome ,Medical and Health Sciences ,Developmental Biology ,Agricultural biotechnology ,Bioinformatics and computational biology - Abstract
The pathogenesis of Alzheimer's disease (AD) depends on environmental and heritable factors, with its molecular etiology still unclear. Here we present a spatial transcriptomic (ST) and single-nucleus transcriptomic survey of late-onset sporadic AD and AD in Down syndrome (DSAD). Studying DSAD provides an opportunity to enhance our understanding of the AD transcriptome, potentially bridging the gap between genetic mouse models and sporadic AD. We identified transcriptomic changes that may underlie cortical layer-preferential pathology accumulation. Spatial co-expression network analyses revealed transient and regionally restricted disease processes, including a glial inflammatory program dysregulated in upper cortical layers and implicated in AD genetic risk and amyloid-associated processes. Cell-cell communication analysis further contextualized this gene program in dysregulated signaling networks. Finally, we generated ST data from an amyloid AD mouse model to identify cross-species amyloid-proximal transcriptomic changes with conformational context.
- Published
- 2024