28 results on '"Schafer ST"'
Search Results
2. Comparison of Carbon Dioxide Laser Modalities for Removal of Polymethylmethacrylate Cement
- Author
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Lange, D. N., Rochat, M. C., Bartels, K. E., Payton, M. E., Hoffman, R. J., Schafer, St. A., and Dickey, D. Th.
- Published
- 1997
- Full Text
- View/download PDF
3. West Nile virus vector Culex modestus established in southern England
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Golding Nick, Nunn Miles A, Medlock Jolyon M, Purse Bethan V, Vaux Alexander GC, and Schäfer Stefanie M
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Anopheles ,Arboviruses ,Culex ,Culicidae ,Disease Vectors ,DNA Barcoding ,Taxonomic ,Introduced Species ,West Nile virus ,Infectious and parasitic diseases ,RC109-216 - Abstract
Abstract Background The risk posed to the United Kingdom by West Nile virus (WNV) has previously been considered low, due to the absence or scarcity of the main Culex sp. bridge vectors. The mosquito Culex modestus is widespread in southern Europe, where it acts as the principle bridge vector of WNV. This species was not previously thought to be present in the United Kingdom. Findings Mosquito larval surveys carried out in 2010 identified substantial populations of Cx. modestus at two sites in marshland in southeast England. Host-seeking-adult traps placed at a third site indicate that the relative seasonal abundance of Cx. modestus peaks in early August. DNA barcoding of these specimens from the United Kingdom and material from southern France confirmed the morphological identification. Conclusions Cx. modestus appears to be established in the North Kent Marshes, possibly as the result of a recent introduction. The addition of this species to the United Kingdom's mosquito fauna may increase the risk posed to the United Kingdom by WNV.
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- 2012
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4. Decreased wheel-running activity in hamsters post myocardial infarction
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Linz Wolfgang, Schäfer Stefan, and Hürland Katja
- Subjects
Medicine - Abstract
Abstract Reduced exercise capacity is a key symptom and an independent determinant of mortality in patients with heart failure. We analyzed the running activity of hamsters with cardiac dysfunction after myocardial infarction. In 39 male Syrian hamsters aged 10 to 12 weeks, a myocardial infarction (MI) was produced by permanent ligation of the left coronary artery. Spontaneous running activity in a wheel was monitored daily. After four weeks, left ventricular (LV) hemodynamics (catheter tip manometry) were measured at baseline and during inotropic stimulation (isoprenaline 0.03, 0.1 and 0.3 μg/kg/min i.v.). LV infarct size was quantified using planimetry. Four weeks post MI, daily running distance was reduced stepwise in animals with small (4–15 % of LV: 9.8 ± 3.4 km/d) and large (> 15 % of LV: 7.5 ± 3.5 km/d) MI, compared to sham-operated hamsters (11.5 ± 1.5 km/d). Similar reductions were observed in maximum speed and distance of longest running period. MI size influenced daily running distance, maximum speed, and longest running period (linear correlations, all p < 0.05). MI size also impaired LV systolic and diastolic function under isoprenaline stimulation. The results suggest that myocardial infarction reduces running capacity and isoprenaline stimulated LV function in hamsters, mimicking impaired exercise performance in patients with heart failure. Analysis of running activity in hamsters with myocardial infarction offers a unique opportunity for non-invasive and serial functional assessment of heart failure in the experimental setting.
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- 2006
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5. miR-124 coordinates metabolic regulators acting at early stages of human neurogenesis.
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Son G, Na Y, Kim Y, Son JH, Clemenson GD, Schafer ST, Yoo JY, Parylak SL, Paquola A, Do H, Kim D, Ahn I, Ju M, Kang CS, Ju Y, Jung E, McDonald AH, Park Y, Kim G, Paik SB, Hur J, Kim J, Han YM, Lee SH, Gage FH, Kim JS, and Han J
- Subjects
- Humans, Mitochondria metabolism, Mitochondria genetics, Membrane Potential, Mitochondrial, Oxidative Phosphorylation, MicroRNAs genetics, MicroRNAs metabolism, Neurogenesis genetics, Neurons metabolism
- Abstract
Metabolic dysregulation of neurons is associated with diverse human brain disorders. Metabolic reprogramming occurs during neuronal differentiation, but it is not fully understood which molecules regulate metabolic changes at the early stages of neurogenesis. In this study, we report that miR-124 is a driver of metabolic change at the initiating stage of human neurogenesis. Proteome analysis has shown the oxidative phosphorylation pathway to be the most significantly altered among the differentially expressed proteins (DEPs) in the immature neurons after the knockdown of miR-124. In agreement with these proteomics results, miR-124-depleted neurons display mitochondrial dysfunctions, such as decreased mitochondrial membrane potential and cellular respiration. Moreover, morphological analyses of mitochondria in early differentiated neurons after miR-124 knockdown result in smaller and less mature shapes. Lastly, we show the potential of identified DEPs as novel metabolic regulators in early neuronal development by validating the effects of GSTK1 on cellular respiration. GSTK1, which is upregulated most significantly in miR-124 knockdown neurons, reduces the oxygen consumption rate of neural cells. Collectively, our data highlight the roles of miR-124 in coordinating metabolic maturation at the early stages of neurogenesis and provide insights into potential metabolic regulators associated with human brain disorders characterized by metabolic dysfunctions., (© 2024. The Author(s).)
- Published
- 2024
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6. Long interspersed nuclear elements safeguard neural progenitors from precocious differentiation.
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Toda T, Bedrosian TA, Schafer ST, Cuoco MS, Linker SB, Ghassemzadeh S, Mitchell L, Whiteley JT, Novaresi N, McDonald AH, Gallina IS, Yoon H, Hester ME, Pena M, Lim C, Suljic E, AlFatah Mansour A, Boulard M, Parylak SL, and Gage FH
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- Humans, Animals, Mice, Cell Differentiation, Long Interspersed Nucleotide Elements, Genomic Instability, Neural Stem Cells
- Abstract
Long interspersed nuclear element-1 (L1 or LINE-1) is a highly abundant mobile genetic element in both humans and mice, comprising almost 20% of each genome. L1s are silenced by several mechanisms, as their uncontrolled expression has the potential to induce genomic instability. However, L1s are paradoxically expressed at high levels in differentiating neural progenitor cells. Using in vitro and in vivo techniques to modulate L1 expression, we report that L1s play a critical role in both human and mouse brain development by regulating the rate of neural differentiation in a reverse-transcription-independent manner., Competing Interests: Declaration of interests The authors declare no competing interests., (Copyright © 2024 The Author(s). Published by Elsevier Inc. All rights reserved.)
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- 2024
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7. NGLY1 mutations cause protein aggregation in human neurons.
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Manole A, Wong T, Rhee A, Novak S, Chin SM, Tsimring K, Paucar A, Williams A, Newmeyer TF, Schafer ST, Rosh I, Kaushik S, Hoffman R, Chen S, Wang G, Snyder M, Cuervo AM, Andrade L, Manor U, Lee K, Jones JR, Stern S, Marchetto MC, and Gage FH
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- Humans, Mutation genetics, Mitochondria metabolism, Neurons metabolism, Peptide-N4-(N-acetyl-beta-glucosaminyl) Asparagine Amidase, Protein Aggregates, Proteomics
- Abstract
Biallelic mutations in the gene that encodes the enzyme N-glycanase 1 (NGLY1) cause a rare disease with multi-symptomatic features including developmental delay, intellectual disability, neuropathy, and seizures. NGLY1's activity in human neural cells is currently not well understood. To understand how NGLY1 gene loss leads to the specific phenotypes of NGLY1 deficiency, we employed direct conversion of NGLY1 patient-derived induced pluripotent stem cells (iPSCs) to functional cortical neurons. Transcriptomic, proteomic, and functional studies of iPSC-derived neurons lacking NGLY1 function revealed several major cellular processes that were altered, including protein aggregate-clearing functionality, mitochondrial homeostasis, and synaptic dysfunctions. These phenotypes were rescued by introduction of a functional NGLY1 gene and were observed in iPSC-derived mature neurons but not astrocytes. Finally, laser capture microscopy followed by mass spectrometry provided detailed characterization of the composition of protein aggregates specific to NGLY1-deficient neurons. Future studies will harness this knowledge for therapeutic development., Competing Interests: Declaration of interests The authors declare no competing interests., (Copyright © 2023 The Authors. Published by Elsevier Inc. All rights reserved.)
- Published
- 2023
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8. An in vivo neuroimmune organoid model to study human microglia phenotypes.
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Schafer ST, Mansour AA, Schlachetzki JCM, Pena M, Ghassemzadeh S, Mitchell L, Mar A, Quang D, Stumpf S, Ortiz IS, Lana AJ, Baek C, Zaghal R, Glass CK, Nimmerjahn A, and Gage FH
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- Humans, Brain, Macrophages, Phenotype, Microglia, Organoids
- Abstract
Microglia are specialized brain-resident macrophages that play crucial roles in brain development, homeostasis, and disease. However, until now, the ability to model interactions between the human brain environment and microglia has been severely limited. To overcome these limitations, we developed an in vivo xenotransplantation approach that allows us to study functionally mature human microglia (hMGs) that operate within a physiologically relevant, vascularized immunocompetent human brain organoid (iHBO) model. Our data show that organoid-resident hMGs gain human-specific transcriptomic signatures that closely resemble their in vivo counterparts. In vivo two-photon imaging reveals that hMGs actively engage in surveilling the human brain environment, react to local injuries, and respond to systemic inflammatory cues. Finally, we demonstrate that the transplanted iHBOs developed here offer the unprecedented opportunity to study functional human microglia phenotypes in health and disease and provide experimental evidence for a brain-environment-induced immune response in a patient-specific model of autism with macrocephaly., Competing Interests: Declaration of interests The authors declare no competing interests., (Copyright © 2023 The Author(s). Published by Elsevier Inc. All rights reserved.)
- Published
- 2023
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9. Transplantation Strategies to Enhance Maturity and Cellular Complexity in Brain Organoids.
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Wang M, Gage FH, and Schafer ST
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- Humans, Brain, Organoids, Neurons, Pluripotent Stem Cells physiology, Neural Stem Cells, Induced Pluripotent Stem Cells
- Abstract
Human brain organoids are 3-dimensional cell aggregates that are generated from pluripotent stem cells and recapitulate features of the early developing human brain. Brain organoids mainly consist of cells from the neural lineage, such as neural progenitor cells, neurons, and astrocytes. However, current brain organoid systems lack functional vasculature as well as other non-neuronal cells that are indispensable for oxygen and nutrient supply to the organoids, causing cell stress and formation of a necrotic center. Attempts to utilize intracerebral transplantation approaches have demonstrated successful vascularization of brain organoids and robust neurodifferentiation. In this review, we summarize recent progress and discuss ethical considerations in the field of brain organoid transplantation., (Copyright © 2023 Society of Biological Psychiatry. Published by Elsevier Inc. All rights reserved.)
- Published
- 2023
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10. Age-dependent instability of mature neuronal fate in induced neurons from Alzheimer's patients.
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Mertens J, Herdy JR, Traxler L, Schafer ST, Schlachetzki JCM, Böhnke L, Reid DA, Lee H, Zangwill D, Fernandes DP, Agarwal RK, Lucciola R, Zhou-Yang L, Karbacher L, Edenhofer F, Stern S, Horvath S, Paquola ACM, Glass CK, Yuan SH, Ku M, Szücs A, Goldstein LSB, Galasko D, and Gage FH
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- Aged, Aging, Fibroblasts, Humans, Neurons, Alzheimer Disease, Induced Pluripotent Stem Cells
- Abstract
Sporadic Alzheimer's disease (AD) exclusively affects elderly people. Using direct conversion of AD patient fibroblasts into induced neurons (iNs), we generated an age-equivalent neuronal model. AD patient-derived iNs exhibit strong neuronal transcriptome signatures characterized by downregulation of mature neuronal properties and upregulation of immature and progenitor-like signaling pathways. Mapping iNs to longitudinal neuronal differentiation trajectory data demonstrated that AD iNs reflect a hypo-mature neuronal identity characterized by markers of stress, cell cycle, and de-differentiation. Epigenetic landscape profiling revealed an underlying aberrant neuronal state that shares similarities with malignant transformation and age-dependent epigenetic erosion. To probe for the involvement of aging, we generated rejuvenated iPSC-derived neurons that showed no significant disease-related transcriptome signatures, a feature that is consistent with epigenetic clock and brain ontogenesis mapping, which indicate that fibroblast-derived iNs more closely reflect old adult brain stages. Our findings identify AD-related neuronal changes as age-dependent cellular programs that impair neuronal identity., Competing Interests: Declaration of interests F.H.G. is an advisory board member of Cell Stem Cell., (Copyright © 2021 The Author(s). Published by Elsevier Inc. All rights reserved.)
- Published
- 2021
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11. Improved Method for Efficient Generation of Functional Neurons from Murine Neural Progenitor Cells.
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Soni A, Klütsch D, Hu X, Houtman J, Rund N, McCloskey A, Mertens J, Schafer ST, Amin H, and Toda T
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- Animals, Cell Culture Techniques, Cell Line, Electrical Synapses physiology, Evoked Potentials, Gene Expression Regulation, Developmental, Mice, Inbred C57BL, Nerve Net physiology, Phenotype, Synaptic Transmission, Mice, Neural Stem Cells physiology, Neurogenesis genetics
- Abstract
Neuronal culture was used to investigate neuronal function in physiological and pathological conditions. Despite its inevitability, primary neuronal culture remained a gold standard method that requires laborious preparation, intensive training, and animal resources. To circumvent the shortfalls of primary neuronal preparations and efficiently give rise to functional neurons, we combine a neural stem cell culture method with a direct cell type-conversion approach. The lucidity of this method enables the efficient preparation of functional neurons from mouse neural progenitor cells on demand. We demonstrate that induced neurons (NPC-iNs) by this method make synaptic connections, elicit neuronal activity-dependent cellular responses, and develop functional neuronal networks. This method will provide a concise platform for functional neuronal assessments. This indeed offers a perspective for using these characterized neuronal networks for investigating plasticity mechanisms, drug screening assays, and probing the molecular and biophysical basis of neurodevelopmental and neurodegenerative diseases.
- Published
- 2021
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12. To eat, or not to eat, that is the question: Neural stem cells escape phagocytosis in autism with macrocephaly.
- Author
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Schafer ST and Gage FH
- Subjects
- Autistic Disorder genetics, Autistic Disorder pathology, Brain immunology, Brain metabolism, Brain pathology, CD47 Antigen genetics, CD47 Antigen immunology, CD47 Antigen metabolism, Chromosome Deletion, Chromosome Duplication, Chromosomes, Human, Pair 16 genetics, Humans, Megalencephaly genetics, Megalencephaly pathology, Phagocytosis genetics, Signal Transduction genetics, Autistic Disorder immunology, Megalencephaly immunology, Neural Stem Cells immunology, Phagocytosis immunology, Signal Transduction immunology
- Abstract
Competing Interests: The authors declare no competing interest.
- Published
- 2021
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13. Incorporation of a nucleoside analog maps genome repair sites in postmitotic human neurons.
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Reid DA, Reed PJ, Schlachetzki JCM, Nitulescu II, Chou G, Tsui EC, Jones JR, Chandran S, Lu AT, McClain CA, Ooi JH, Wang TW, Lana AJ, Linker SB, Ricciardulli AS, Lau S, Schafer ST, Horvath S, Dixon JR, Hah N, Glass CK, and Gage FH
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- Aging genetics, DNA Damage, DNA, Intergenic, Deoxyuridine analogs & derivatives, Deoxyuridine metabolism, Embryonic Stem Cells, Histones metabolism, Humans, Mitosis, Mutation, Nervous System Diseases genetics, Neurons cytology, Promoter Regions, Genetic, RNA-Binding Proteins metabolism, Sequence Analysis, DNA, Transcription, Genetic, DNA Repair, Genome, Human, Genomic Instability, Neurons metabolism
- Abstract
Neurons are the longest-lived cells in our bodies and lack DNA replication, which makes them reliant on a limited repertoire of DNA repair mechanisms to maintain genome fidelity. These repair mechanisms decline with age, but we have limited knowledge of how genome instability emerges and what strategies neurons and other long-lived cells may have evolved to protect their genomes over the human life span. A targeted sequencing approach in human embryonic stem cell-induced neurons shows that, in neurons, DNA repair is enriched at well-defined hotspots that protect essential genes. These hotspots are enriched with histone H2A isoforms and RNA binding proteins and are associated with evolutionarily conserved elements of the human genome. These findings provide a basis for understanding genome integrity as it relates to aging and disease in the nervous system., (Copyright © 2021 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works.)
- Published
- 2021
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14. Cellular complexity in brain organoids: Current progress and unsolved issues.
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Mansour AA, Schafer ST, and Gage FH
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- Brain physiology, Cell Differentiation, Cell Transplantation methods, Cell Transplantation trends, Endothelial Cells cytology, Endothelial Cells physiology, Humans, Lymphocytes cytology, Lymphocytes physiology, Models, Biological, Neovascularization, Physiologic, Neural Stem Cells physiology, Neural Stem Cells transplantation, Neurogenesis physiology, Neuroglia cytology, Neuroglia physiology, Neurons physiology, Neurons transplantation, Organoids physiology, Pluripotent Stem Cells physiology, Brain cytology, Neural Stem Cells cytology, Neurons cytology, Organoids cytology, Pluripotent Stem Cells cytology
- Abstract
Brain organoids are three-dimensional neural aggregates derived from pluripotent stem cells through self-organization and recapitulate architectural and cellular aspects of certain brain regions. Brain organoids are currently a highly exciting area of research that includes the study of human brain development, function, and dysfunction in unprecedented ways. In this Review, we discuss recent discoveries related to the generation of brain organoids that resemble diverse brain regions. We provide an overview of the strategies to complement these primarily neuroectodermal models with cell types of non-neuronal origin, such as vasculature and immune cells. Recent transplantation approaches aiming to achieve higher cellular complexity and long-term survival of these models will then be discussed. We conclude by highlighting unresolved key questions and future directions in this exciting area of human brain organogenesis., (Copyright © 2020 Elsevier Ltd. All rights reserved.)
- Published
- 2021
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15. The When and Where: Molecular and Cellular Convergence in Autism.
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Schafer ST and Gage FH
- Subjects
- Humans, Neurogenesis, Autism Spectrum Disorder genetics, Autistic Disorder genetics, Induced Pluripotent Stem Cells
- Published
- 2021
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16. Zika Virus Targets Glioblastoma Stem Cells through a SOX2-Integrin α v β 5 Axis.
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Zhu Z, Mesci P, Bernatchez JA, Gimple RC, Wang X, Schafer ST, Wettersten HI, Beck S, Clark AE, Wu Q, Prager BC, Kim LJY, Dhanwani R, Sharma S, Garancher A, Weis SM, Mack SC, Negraes PD, Trujillo CA, Penalva LO, Feng J, Lan Z, Zhang R, Wessel AW, Dhawan S, Diamond MS, Chen CC, Wechsler-Reya RJ, Gage FH, Hu H, Siqueira-Neto JL, Muotri AR, Cheresh DA, and Rich JN
- Subjects
- Humans, Receptors, Vitronectin, SOXB1 Transcription Factors genetics, Glioblastoma, Neural Stem Cells, Zika Virus, Zika Virus Infection
- Abstract
Zika virus (ZIKV) causes microcephaly by killing neural precursor cells (NPCs) and other brain cells. ZIKV also displays therapeutic oncolytic activity against glioblastoma (GBM) stem cells (GSCs). Here we demonstrate that ZIKV preferentially infected and killed GSCs and stem-like cells in medulloblastoma and ependymoma in a SOX2-dependent manner. Targeting SOX2 severely attenuated ZIKV infection, in contrast to AXL. As mechanisms of SOX2-mediated ZIKV infection, we identified inverse expression of antiviral interferon response genes (ISGs) and positive correlation with integrin α
v (ITGAV). ZIKV infection was disrupted by genetic targeting of ITGAV or its binding partner ITGB5 and by an antibody specific for integrin αv β5 . ZIKV selectively eliminated GSCs from species-matched human mature cerebral organoids and GBM surgical specimens, which was reversed by integrin αv β5 inhibition. Collectively, our studies identify integrin αv β5 as a functional cancer stem cell marker essential for GBM maintenance and ZIKV infection, providing potential brain tumor therapy., Competing Interests: Declaration of Interests A.R.M. is a co-founder and has equity interest in TISMOO, a company dedicated to genetic analysis focusing on therapeutic applications customized for autism spectrum disorder and other neurological disorder origin genetics. The terms of this arrangement have been reviewed and approved by the University of California, San Diego in accordance with its conflict of interest policies. D.A.C. is the co-founder of TargeGen. D.A.C. is a founder of a new company, AlphaBeta Therapeutics, that is developing an antibody to integrin alphaVbeta3, involved in cancer treatment; however, this company is not yet funded. M.S.D. is a consultant for Inbios and Atreca and on the Scientific Advisory Board of Moderna., (Copyright © 2019 Elsevier Inc. All rights reserved.)- Published
- 2020
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17. Brain cell type-specific enhancer-promoter interactome maps and disease - risk association.
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Nott A, Holtman IR, Coufal NG, Schlachetzki JCM, Yu M, Hu R, Han CZ, Pena M, Xiao J, Wu Y, Keulen Z, Pasillas MP, O'Connor C, Nickl CK, Schafer ST, Shen Z, Rissman RA, Brewer JB, Gosselin D, Gonda DD, Levy ML, Rosenfeld MG, McVicker G, Gage FH, Ren B, and Glass CK
- Subjects
- Cells, Cultured, Chromatin metabolism, Gene Regulatory Networks, Genome-Wide Association Study, Humans, Sequence Deletion, Adaptor Proteins, Signal Transducing genetics, Alzheimer Disease genetics, Brain metabolism, Enhancer Elements, Genetic genetics, Genetic Variation, Microglia metabolism, Nuclear Proteins genetics, Promoter Regions, Genetic genetics, Tumor Suppressor Proteins genetics
- Abstract
Noncoding genetic variation is a major driver of phenotypic diversity, but functional interpretation is challenging. To better understand common genetic variation associated with brain diseases, we defined noncoding regulatory regions for major cell types of the human brain. Whereas psychiatric disorders were primarily associated with variants in transcriptional enhancers and promoters in neurons, sporadic Alzheimer's disease (AD) variants were largely confined to microglia enhancers. Interactome maps connecting disease-risk variants in cell-type-specific enhancers to promoters revealed an extended microglia gene network in AD. Deletion of a microglia-specific enhancer harboring AD-risk variants ablated BIN1 expression in microglia, but not in neurons or astrocytes. These findings revise and expand the list of genes likely to be influenced by noncoding variants in AD and suggest the probable cell types in which they function., (Copyright © 2019 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works.)
- Published
- 2019
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18. Nerve cells from the brain invade prostate tumours.
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Schafer ST and Gage FH
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- Brain, Central Nervous System, Drive, Humans, Male, Neurogenesis, Neurons, Prostatic Neoplasms
- Published
- 2019
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19. Pathological priming causes developmental gene network heterochronicity in autistic subject-derived neurons.
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Schafer ST, Paquola ACM, Stern S, Gosselin D, Ku M, Pena M, Kuret TJM, Liyanage M, Mansour AA, Jaeger BN, Marchetto MC, Glass CK, Mertens J, and Gage FH
- Subjects
- Autism Spectrum Disorder pathology, Autism Spectrum Disorder physiopathology, Humans, Induced Pluripotent Stem Cells pathology, Neural Stem Cells pathology, Neurons pathology, Autism Spectrum Disorder genetics, Gene Regulatory Networks, Inhibitory Postsynaptic Potentials physiology, Nerve Net physiopathology, Neurons physiology
- Abstract
Autism spectrum disorder (ASD) is thought to emerge during early cortical development. However, the exact developmental stages and associated molecular networks that prime disease propensity are elusive. To profile early neurodevelopmental alterations in ASD with macrocephaly, we monitored subject-derived induced pluripotent stem cells (iPSCs) throughout the recapitulation of cortical development. Our analysis revealed ASD-associated changes in the maturational sequence of early neuron development, involving temporal dysregulation of specific gene networks and morphological growth acceleration. The observed changes tracked back to a pathologically primed stage in neural stem cells (NSCs), reflected by altered chromatin accessibility. Concerted over-representation of network factors in control NSCs was sufficient to trigger ASD-like features, and circumventing the NSC stage by direct conversion of ASD iPSCs into induced neurons abolished ASD-associated phenotypes. Our findings identify heterochronic dynamics of a gene network that, while established earlier in development, contributes to subsequent neurodevelopmental aberrations in ASD.
- Published
- 2019
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20. A novel environment-evoked transcriptional signature predicts reactivity in single dentate granule neurons.
- Author
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Jaeger BN, Linker SB, Parylak SL, Barron JJ, Gallina IS, Saavedra CD, Fitzpatrick C, Lim CK, Schafer ST, Lacar B, Jessberger S, and Gage FH
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- Animals, CA1 Region, Hippocampal cytology, Cytoplasmic Granules, Female, Gene Expression Profiling, Interneurons, Mice, Mice, Inbred C57BL, Models, Neurological, Neurogenesis, Neuronal Plasticity, Pyramidal Cells metabolism, Stochastic Processes, Time Factors, Vasoactive Intestinal Peptide metabolism, Dentate Gyrus metabolism, Gene Expression Regulation, Memory, Neurons metabolism, Transcription, Genetic
- Abstract
Activity-induced remodeling of neuronal circuits is critical for memory formation. This process relies in part on transcription, but neither the rate of activity nor baseline transcription is equal across neuronal cell types. In this study, we isolated mouse hippocampal populations with different activity levels and used single nucleus RNA-seq to compare their transcriptional responses to activation. One hour after novel environment exposure, sparsely active dentate granule (DG) neurons had a much stronger transcriptional response compared to more highly active CA1 pyramidal cells and vasoactive intestinal polypeptide (VIP) interneurons. Activity continued to impact transcription in DG neurons up to 5 h, with increased heterogeneity. By re-exposing the mice to the same environment, we identified a unique transcriptional signature that selects DG neurons for reactivation upon re-exposure to the same environment. These results link transcriptional heterogeneity to functional heterogeneity and identify a transcriptional correlate of memory encoding in individual DG neurons.
- Published
- 2018
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21. Nup153 Interacts with Sox2 to Enable Bimodal Gene Regulation and Maintenance of Neural Progenitor Cells.
- Author
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Toda T, Hsu JY, Linker SB, Hu L, Schafer ST, Mertens J, Jacinto FV, Hetzer MW, and Gage FH
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- Animals, Chromatin metabolism, Genome, Mice, Neurogenesis genetics, Protein Binding, Transcription, Genetic, Gene Expression Regulation, Neural Stem Cells metabolism, Nuclear Pore Complex Proteins metabolism, SOXB1 Transcription Factors metabolism
- Abstract
Neural progenitor cells (NeuPCs) possess a unique nuclear architecture that changes during differentiation. Nucleoporins are linked with cell-type-specific gene regulation, coupling physical changes in nuclear structure to transcriptional output; but, whether and how they coordinate with key fate-determining transcription factors is unclear. Here we show that the nucleoporin Nup153 interacts with Sox2 in adult NeuPCs, where it is indispensable for their maintenance and controls neuronal differentiation. Genome-wide analyses show that Nup153 and Sox2 bind and co-regulate hundreds of genes. Binding of Nup153 to gene promoters or transcriptional end sites correlates with increased or decreased gene expression, respectively, and inhibiting Nup153 expression alters open chromatin configurations at its target genes, disrupts genomic localization of Sox2, and promotes differentiation in vitro and a gliogenic fate switch in vivo. Together, these findings reveal that nuclear structural proteins may exert bimodal transcriptional effects to control cell fate., (Copyright © 2017 Elsevier Inc. All rights reserved.)
- Published
- 2017
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22. Adult Neurogenesis in the Hippocampus: From Stem Cells to Behavior.
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Gonçalves JT, Schafer ST, and Gage FH
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- Adult Stem Cells metabolism, Animals, Humans, Mental Disorders pathology, Mental Disorders physiopathology, Neural Stem Cells metabolism, Neurodegenerative Diseases pathology, Neurodegenerative Diseases physiopathology, Adult Stem Cells cytology, Hippocampus cytology, Hippocampus physiology, Neural Stem Cells cytology, Neurogenesis
- Abstract
The dentate gyrus of the mammalian hippocampus continuously generates new neurons during adulthood. These adult-born neurons become functionally active and are thought to contribute to learning and memory, especially during their maturation phase, when they have extraordinary plasticity. In this Review, we discuss the molecular machinery involved in the generation of new neurons from a pool of adult neural stem cells and their integration into functional hippocampal circuits. We also summarize the potential functions of these newborn neurons in the adult brain, their contribution to behavior, and their relevance to disease., (Copyright © 2016. Published by Elsevier Inc.)
- Published
- 2016
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23. Functional Implications of miR-19 in the Migration of Newborn Neurons in the Adult Brain.
- Author
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Han J, Kim HJ, Schafer ST, Paquola A, Clemenson GD, Toda T, Oh J, Pankonin AR, Lee BS, Johnston ST, Sarkar A, Denli AM, and Gage FH
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- Adult, Aging, Animals, Brain metabolism, Humans, Induced Pluripotent Stem Cells cytology, Infant, Newborn, Mice, Neurogenesis genetics, Neurogenesis physiology, Schizophrenia genetics, Schizophrenia pathology, Cell Differentiation genetics, Cell Movement genetics, MicroRNAs genetics, Neural Stem Cells cytology, Neurons metabolism
- Abstract
Altered microRNA profiles have been implicated in human brain disorders. However, the functional contribution of individual microRNAs to neuronal development and function is largely unknown. Here, we report biological functions for miR-19 in adult neurogenesis. We determined that miR-19 is enriched in neural progenitor cells (NPCs) and downregulated during neuronal development in the adult hippocampus. By manipulating miR-19 in NPCs for gain- and loss-of-function studies, we discovered that miR-19 regulates cell migration by directly targeting Rapgef2. Concordantly, dysregulation of miR-19 in NPCs alters the positioning of newborn neurons in the adult brain. Furthermore, we found abnormal expression of miR-19 in human NPCs generated from schizophrenic patient-derived induced pluripotent stem cells (iPSCs) that have been described as displaying aberrant migration. Our study demonstrates the significance of posttranscriptional gene regulation by miR-19 in preventing the irregular migration of adult-born neurons that may contribute to the etiology of schizophrenia., (Copyright © 2016 Elsevier Inc. All rights reserved.)
- Published
- 2016
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24. In vivo imaging of dendritic pruning in dentate granule cells.
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Gonçalves JT, Bloyd CW, Shtrahman M, Johnston ST, Schafer ST, Parylak SL, Tran T, Chang T, and Gage FH
- Subjects
- Animals, Cytoplasmic Granules metabolism, Female, Homeostasis physiology, Mice, Inbred C57BL, Models, Animal, Neuroimaging methods, Dendrites physiology, Hippocampus cytology, Neuronal Plasticity physiology
- Abstract
We longitudinally imaged the developing dendrites of adult-born mouse dentate granule cells (DGCs) in vivo and found that they underwent over-branching and pruning. Exposure to an enriched environment and constraint of dendritic growth by disrupting Wnt signaling led to increased branch addition and accelerated growth, which were, however, counteracted by earlier and more extensive pruning. Our results indicate that pruning is regulated in a homeostatic fashion to oppose excessive branching and promote a similar dendrite structure in DGCs.
- Published
- 2016
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25. Erratum: Differential responses to lithium in hyperexcitable neurons from patients with bipolar disorder.
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Mertens J, Wang QW, Kim Y, Yu DX, Pham S, Yang B, Zheng Y, Diffenderfer KE, Zhang J, Soltani S, Eames T, Schafer ST, Boyer L, Marchetto MC, Nurnberger JI, Calabrese JR, Oedegaard KJ, McCarthy MJ, Zandi PP, Alda M, Nievergelt CM, Mi S, Brennand KJ, Kelsoe JR, Gage FH, and Yao J
- Published
- 2016
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26. Differential responses to lithium in hyperexcitable neurons from patients with bipolar disorder.
- Author
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Mertens J, Wang QW, Kim Y, Yu DX, Pham S, Yang B, Zheng Y, Diffenderfer KE, Zhang J, Soltani S, Eames T, Schafer ST, Boyer L, Marchetto MC, Nurnberger JI, Calabrese JR, Ødegaard KJ, McCarthy MJ, Zandi PP, Alda M, Nievergelt CM, Mi S, Brennand KJ, Kelsoe JR, Gage FH, and Yao J
- Subjects
- Calcium Signaling drug effects, Dentate Gyrus drug effects, Dentate Gyrus pathology, Endophenotypes, Humans, Induced Pluripotent Stem Cells pathology, Male, Mitochondria pathology, Patch-Clamp Techniques, Action Potentials drug effects, Antipsychotic Agents pharmacology, Bipolar Disorder pathology, Lithium Compounds pharmacology, Neurons drug effects, Neurons pathology
- Abstract
Bipolar disorder is a complex neuropsychiatric disorder that is characterized by intermittent episodes of mania and depression; without treatment, 15% of patients commit suicide. Hence, it has been ranked by the World Health Organization as a top disorder of morbidity and lost productivity. Previous neuropathological studies have revealed a series of alterations in the brains of patients with bipolar disorder or animal models, such as reduced glial cell number in the prefrontal cortex of patients, upregulated activities of the protein kinase A and C pathways and changes in neurotransmission. However, the roles and causation of these changes in bipolar disorder have been too complex to exactly determine the pathology of the disease. Furthermore, although some patients show remarkable improvement with lithium treatment for yet unknown reasons, others are refractory to lithium treatment. Therefore, developing an accurate and powerful biological model for bipolar disorder has been a challenge. The introduction of induced pluripotent stem-cell (iPSC) technology has provided a new approach. Here we have developed an iPSC model for human bipolar disorder and investigated the cellular phenotypes of hippocampal dentate gyrus-like neurons derived from iPSCs of patients with bipolar disorder. Guided by RNA sequencing expression profiling, we have detected mitochondrial abnormalities in young neurons from patients with bipolar disorder by using mitochondrial assays; in addition, using both patch-clamp recording and somatic Ca(2+) imaging, we have observed hyperactive action-potential firing. This hyperexcitability phenotype of young neurons in bipolar disorder was selectively reversed by lithium treatment only in neurons derived from patients who also responded to lithium treatment. Therefore, hyperexcitability is one early endophenotype of bipolar disorder, and our model of iPSCs in this disease might be useful in developing new therapies and drugs aimed at its clinical treatment.
- Published
- 2015
- Full Text
- View/download PDF
27. REST Regulates Non-Cell-Autonomous Neuronal Differentiation and Maturation of Neural Progenitor Cells via Secretogranin II.
- Author
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Kim HJ, Denli AM, Wright R, Baul TD, Clemenson GD, Morcos AS, Zhao C, Schafer ST, Gage FH, and Kagalwala MN
- Subjects
- Animals, Cells, Cultured, Female, Hippocampus cytology, Hippocampus growth & development, Hippocampus metabolism, Mice, Mice, Inbred C57BL, Neural Stem Cells metabolism, Neurogenesis physiology, Rats, Wistar, Cell Differentiation physiology, Neural Stem Cells physiology, Neurons physiology, Repressor Proteins physiology, Secretogranin II metabolism
- Abstract
RE-1 silencing transcription factor (REST), a master negative regulator of neuronal differentiation, controls neurogenesis by preventing the differentiation of neural stem cells. Here we focused on the role of REST in the early steps of differentiation and maturation of adult hippocampal progenitors (AHPs). REST knockdown promoted differentiation and affected the maturation of rat AHPs. Surprisingly, REST knockdown cells enhanced the differentiation of neighboring wild-type AHPs, suggesting that REST may play a non-cell-autonomous role. Gene expression analysis identified Secretogranin II (Scg2) as the major secreted REST target responsible for the non-cell-autonomous phenotype. Loss-of-function of Scg2 inhibited differentiation in vitro, and exogenous SCG2 partially rescued this phenotype. Knockdown of REST in neural progenitors in mice led to precocious maturation into neurons at the expense of mushroom spines in vivo. In summary, we found that, in addition to its cell-autonomous function, REST regulates differentiation and maturation of AHPs non-cell-autonomously via SCG2., Significance Statement: Our results reveal that REST regulates differentiation and maturation of neural progenitor cells in vitro by orchestrating both cell-intrinsic and non-cell-autonomous factors and that Scg2 is a major secretory target of REST with a differentiation-enhancing activity in a paracrine manner. In vivo, REST depletion causes accelerated differentiation of newborn neurons at the expense of spine defects, suggesting a potential role for REST in the timing of the maturation of granule neurons., (Copyright © 2015 the authors 0270-6474/15/3514872-13$15.00/0.)
- Published
- 2015
- Full Text
- View/download PDF
28. The Wnt adaptor protein ATP6AP2 regulates multiple stages of adult hippocampal neurogenesis.
- Author
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Schafer ST, Han J, Pena M, von Bohlen Und Halbach O, Peters J, and Gage FH
- Subjects
- Animals, Cadherins genetics, Cadherins physiology, Cell Differentiation physiology, Cell Polarity physiology, Cells, Cultured, Female, Frizzled Receptors genetics, Frizzled Receptors physiology, Gene Expression Regulation, Developmental genetics, Gene Knockdown Techniques, Hippocampus growth & development, Mice, Neural Stem Cells physiology, Neurogenesis genetics, Proton-Translocating ATPases genetics, Receptors, Cell Surface genetics, Receptors, G-Protein-Coupled genetics, Receptors, G-Protein-Coupled physiology, Signal Transduction physiology, Up-Regulation, Wnt Signaling Pathway genetics, Wnt Signaling Pathway physiology, beta Catenin physiology, Gene Expression Regulation, Developmental physiology, Hippocampus cytology, Neurogenesis physiology, Proton-Translocating ATPases physiology, Receptors, Cell Surface physiology
- Abstract
In the mammalian hippocampus, canonical Wnt signals provided by the microenvironment regulate the differentiation of adult neural stem cells (NSCs) toward the neuronal lineage. Wnts are part of a complex and diverse set of signaling pathways and the role of Wnt/Planar cell polarity (PCP) signaling in adult neurogenesis remains unknown. Using in vitro assays on differentiating adult NSCs, we identified a transition of Wnt signaling responsiveness from Wnt/β-catenin to Wnt/PCP signaling. In mice, retroviral knockdown strategies against ATP6AP2, a recently discovered core protein involved in both signaling pathways, revealed that its dual role is critical for granule cell fate and morphogenesis. We were able to confirm its dual role in neurogenic Wnt signaling in vitro for both canonical Wnt signaling in proliferating adult NSCs and non-canonical Wnt signaling in differentiating neuroblasts. Although LRP6 appeared to be critical for granule cell fate determination, in vivo knockdown of PCP core proteins FZD3 and CELSR1-3 revealed severe maturational defects without changing the identity of newborn granule cells. Furthermore, we found that CELSR1-3 control distinctive aspects of PCP-mediated granule cell morphogenesis with CELSR1 regulating the direction of dendrite initiation sites and CELSR2/3 controlling radial migration and dendritic patterning. The data presented here characterize distinctive roles for Wnt/β-catenin signaling in granule cell fate determination and for Wnt/PCP signaling in controlling the morphological maturation of differentiating neuroblasts., (Copyright © 2015 the authors 0270-6474/15/354983-16$15.00/0.)
- Published
- 2015
- Full Text
- View/download PDF
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