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We present NeMO-Net, the Srst open-source deep convolutional neural network (CNN) and interactive learning and training software aimed at assessing the present and past dynamics of coral reef ecosystems through habitat mapping into 10 biological and physical classes. Shallow marine systems, particularly coral reefs, are under significant pressures due to climate change, ocean acidification, and other anthropogenic pressures, leading to rapid, often devastating changes, in these fragile and diverse ecosystems. Historically, remote sensing of shallow marine habitats has been limited to meter-scale imagery due to the optical effects of ocean wave distortion, refraction, and optical attenuation. NeMO-Net combines 3D cm-scale distortion-free imagery captured using NASA FluidCam and Fluid lensing remote sensing technology with low resolution airborne and spaceborne datasets of varying spatial resolutions, spectral spaces, calibrations, and temporal cadence in a supercomputer-based machine learning framework. NeMO-Net augments and improves the benthic habitat classification accuracy of low-resolution datasets across large geographic ad temporal scales using high-resolution training data from FluidCam.NeMO-Net uses fully convolutional networks based upon ResNet and ReSneNet to perform semantic segmentation of remote sensing imagery of shallow marine systems captured by drones, aircraft, and satellites, including WorldView and Sentinel. Deep Laplacian Pyramid Super-Resolution Networks (LapSRN) alongside Domain Adversarial Neural Networks (DANNs) are used to reconstruct high resolution information from low resolution imagery, and to recognize domain-invariant features across datasets from multiple platforms to achieve high classification accuracies, overcoming inter-sensor spatial, spectral and temporal variations.Finally, we share our online active learning and citizen science platform, which allows users to provide interactive training data for NeMO-Net in 2D and 3D, integrated within a deep learning framework. We present results from the PaciSc Islands including Fiji, Guam and Peros Banhos 1 1 2 1 3 1 where 24-class classification accuracy exceeds 91%.

Observational paucity is a reality in the Arctic Ocean. This is especially true for near-surface variables such as temperature, moisture, heat fluxes and BL clouds. As a result, modeling has become one of the major avenues for understanding current and future Arctic trends. Reanalyses are frequently used to force global ocean circulation and sea-ice models. But in northern high latitudes, model integrations and reanalyses are known to have large uncertainties in temperature and humidity profiles, and in boundary layer cloudiness. These are common sources of error in the surface radiative budget terms.An important way to diagnose these biases spatially and temporally is by using satellite remote sensing data. However, remotely-sensed observations also have large uncertainties, especially in near-surface temperature and relative humidity profiles.In situ observational studies are important in bridging our knowledge gap in regions such as the Arctic Ocean. Here, we utilize airborne and ship observations from the ARISE, ACME-IV, and ASCOS campaigns to construct critical relative humidity (RH) profiles over the Beaufort Sea. Such profiles are used as parameterization inputs in the NASA GOES global model to derive the total water condensate in a model grid-box, which determines the cloud fraction. Currently, the critical RH profiles are derived by global AIRS data, relaying mostly on mid-latitude regions, which are not necessarily relevant to the Arctic.We derive campaign-wide mean, standard deviation, and critical RH values, for grid size of 50x50 km and altitude bins between 50 to 400 m, covering both open-ocean and sea-ice covered regions. We compare profiles over open ocean and sea-ice, and look at correlations between the observed critical RH values and water condensate (by cloud number concentration) from observations versus the modeled ones. We then input our calculated values of minimal critical RH values into a set of GEOS single column model (SCM) simulations over the ARISE and ASCOS regions and compare the differences between the predicted values of cloud liquid water path (LWP), ice water path (IWP) and surface fluxes with the observed ones under the range of input parameterizations. Finally, we discuss the implications on surface radiative budget predictions in this region.

This study presents and evaluates an updated algorithmfor quantification of absorbing aerosols above clouds(AACs) from passive satellite measurements. The focus isbiomass burning in the south-eastern Atlantic Ocean duringthe 2016 and 2017 ObseRvations of Aerosols above CLoudsand their intEractionS (ORACLES) field campaign deployments.The algorithm retrieves the above-cloud aerosoloptical depth (AOD) and underlying liquid cloud opticaldepth and is applied to measurements from the Sea-viewingWide Field-of-view Sensor (SeaWiFS), Moderate ResolutionImaging Spectroradiometer (MODIS), and Visible InfraredImaging Radiometer Suite (VIIRS) from 1997 to 2017. AirborneNASA Ames Spectrometers for Sky-Scanning, Sun-Tracking Atmospheric Research (4STAR) and NASA LangleyHigh Spectral Resolution Lidar 2 (HSRL2) data collectedduring ORACLES provide important validation for spectralAOD for MODIS and VIIRS; as the SeaWiFS missionended in 2010, it cannot be evaluated directly. The 4STARand HSRL2 comparisons are complementary and reveal performancegenerally in line with uncertainty estimates providedby the optimal estimation retrieval framework used. Atpresent the two MODIS-based data records seem the mostreliable, although there are differences between the deployments,which may indicate that the available data are not yetsufficient to provide a robust regional validation. Spatiotemporalpatterns in the data sets are similar, and the time seriesare very strongly correlated with each other (correlationcoefficients from 0.95 to 0.99). Offsets between the satellitedata sets are thought to be chiefly due to differences in absolutecalibration between the sensors. The available validationdata for this type of algorithm are limited to a small numberof field campaigns, and it is strongly recommended that suchairborne measurements continue to be made, both over thesouthern Atlantic Ocean and elsewhere.

In the past decade, coral reefs worldwide have experienced unprecedented stresses due to climate change, ocean acidification, and anthropomorphic pressures, instigating massive bleaching and die-off of these fragile and diverse ecosystems. Furthermore, remote sensing of these shallow marine habitats is hindered by ocean wave distortion, refraction and optical attenuation, leading invariably to data products that are often of low resolution and signal-to-noise (SNR) ratio. However, recent advances in UAV and Fluid Lensing technology have allowed us to capture multispectral 3D imagery of these systems at sub-cm scales from above the water surface, giving us an unprecedented view of their growth and decay. By combining spatial and spectral information from varying resolutions, we seek to augment and improve the classification accuracy of previously low-resolution datasets at large temporal scales.NeMO-Net, the first open-source deep convolutional neural network (CNN) and interactive learning and training software, currently being developed at NASA Ames, is aimed at assessing the present and past dynamics of coral reef ecosystems through determination of percent living cover and morphology. The latest iteration uses fully convolutional networks to segment and identify coral imagery taken by UAVs and satellites, including WorldView-2 and Sentinel. We present results taken from the Indian Ocean where classification accuracy has exceeded 91% for 24 geomorphological classes given ample training data. In addition, we utilize deep Laplacian Pyramid Super-Resolution Networks (LapSRN) to reconstruct high resolution information from low resolution imagery, trained from various UAV and satellite datasets. Finally, in the case of insufficient training data, we have developed an interactive online platform that allows users to easily segment and submit their classifications, which has been integrated with the current NeMO-Net workflow. Specifically, we present results from the Fiji islands in which preliminary user data has allowed for the accurate identification of 9 separate classes, despite issues such as cloud shadowing and spectral variation. The project is being supported by NASA's Earth Science Technology Office (ESTO) Advanced Information Systems Technology (AIST-16) Program.

The Spectrometer for Sky-Scanning, Sun-Tracking Atmospheric Research (4STAR) combines airborne sun tracking and sky scanning with diffraction spectroscopy to improve knowledge of atmospheric constituents and their links to airpollution and climate. Direct beam hyperspectral measurement of optical depth improves retrievals of gas constituentsand determination of aerosol properties. Sky scanning enhances retrievals of aerosol type and size distribution.Hyperspectral cloud-transmitted radiance measurements enable the retrieval of cloud properties from below clouds.These measurements tighten the closure between satellite and ground-based measurements. 4STAR incorporates amodular sun-tracking sky-scanning optical head with optical fiber signal transmission to rack mounted spectrometers,permitting miniaturization of the external optical tracking head, and future detector evolution.4STAR has supported a broad range of flight experiments since it was first flown in 2010. This experience provides thebasis for a series of improvements directed toward reducing measurement uncertainty and calibration complexity, andexpanding future measurement capabilities, to be incorporated into a new 5STAR instrument. A 9-channel photodioderadiometer with AERONET-matched bandpass filters will be incorporated to improve calibration stability. A wide dynamic range tracking camera will provide a high precision solar position tracking signal as well as an image of sky conditions around the solar axis. An ultrasonic window cleaning system design will be tested. A UV spectrometer tailored for formaldehyde and SO2 gas retrievals will be added to the spectrometer enclosure. Finally, expansion capability for a 4 channel polarized radiometer to measure the Stokes polarization vector of sky light will be incorporated. This paper presents initial progress on this next-generation 5STAR instrument.

The quantification of radiative forcing due to the cumulative effects of aerosols, both directly and on cloud properties, remains the biggest source of uncertainty in our understanding of the physical climate. How the magnitude of these effects may be modified by meteorological conditions is an important aspect of this question. The Southeast Atlantic Ocean (SEA), with seasonal biomass burning (BB) smoke plumes overlying a persistent stratocumulus cloud deck, offers a perfect natural observatory in which to study the complexities of aerosol-cloud interactions. The NASA ORACLES (ObseRvations of Aerosols above CLouds and their intEractionS) campaign consists of three field deployments over three years (2016-2018) with the goal of gaining a better understanding of the complex processes (direct and indirect) by which BB aerosols affect clouds. We present results from the first ORACLES field deployment, which took place in September 2016 out of Walvis Bay, Namibia. Two NASA aircraft were flown with a suite of aerosol, cloud, radiation, and meteorological instruments for remote-sensing and in-situ observations. A strong correlation was observed between the aircraft-measured pollution indicators (carbon monoxide and aerosol properties) and atmospheric water vapor content, at all altitudes. Atmospheric reanalysis indicates that convective dynamics over the continent, near likely contribute to this elevated signal. Understanding the mechanisms by which water vapor covaries with plume strength is important to quantifying the magnitude of the aerosol direct and semi-direct effects in the region.

The Spectrometer for Sky-Scanning, Sun-Tracking Atmospheric Research (4STAR) combines airborne sun tracking and sky scanning with grating spectroscopy to improve knowledge of atmospheric constituents and their links to air-pollution and climate. Hyper-spectral measurements of direct-beam solar irradiance provide retrievals of gas constituents, aerosol optical depth, and aerosol and thin cloud optical properties. Sky radiance measurements in the principal and almucantar planes enhance retrievals of aerosol absorption, aerosol type, and size mode distribution. Zenith radiance measurements are used to retrieve cloud properties and phase, which in turn are used to quantify the radiative transfer below cloud layers. These airborne measurements tighten the closure between satellite and ground-based measurements. In contrast to the Ames Airborne Tracking Sunphotometer (AATS-14) predecessor instrument, new technologies for each subsystem have been incorporated into 4STAR. In particular, 4STAR utilizes a modular sun-trackingsky-scanning optical head with fiber optic signal transmission to rack mounted spectrometers, permitting miniaturization of the external optical head, and spectrometerdetector configurations that may be tailored for specific scientific objectives. This paper discusses technical challenges relating to compact optical collector design, radiometric dynamic range and stability, and broad spectral coverage at high resolution. Test results benchmarking the performance of the instrument against the AATS-14 standard and emerging science requirements are presented.

The NASA Ames Sun-photometer-Satellite Group, DOE, PNNL Atmospheric Sciences and Global Change Division, and NASA Goddards AERONET (AErosol RObotic NETwork) team recently collaborated on the development of a new airborne sunphotometry instrument that provides information on gases and aerosols extending far beyond what can be derived from discrete-channel direct-beam measurements, while preserving or enhancing many of the desirable AATS features (e.g., compactness, versatility, automation, reliability). The enhanced instrument combines the sun-tracking ability of the current 14-Channel NASA Ames AATS-14 with the sky-scanning ability of the ground-based AERONET Sunsky photometers, while extending both AATS-14 and AERONET capabilities by providing full spectral information from the UV (350 nm) to the SWIR (1,700 nm). Strengths of this measurement approach include many more wavelengths (isolated from gas absorption features) that may be used to characterize aerosols and detailed (oversampled) measurements of the absorption features of specific gas constituents. The Sky Scanning Sun Tracking Airborne Radiometer (3STAR) replicates the radiometer functionality of the AATS14 instrument but incorporates modern COTS technologies for all instruments subsystems. A 19-channel radiometer bundle design is borrowed from a commercial water column radiance instrument manufactured by Biospherical Instruments of San Diego California (ref, Morrow and Hooker)) and developed using NASA funds under the Small Business Innovative Research (SBIR) program. The 3STAR design also incorporates the latest in robotic motor technology embodied in Rotary actuators from Oriental motor Corp. having better than 15 arc seconds of positioning accuracy. Control system was designed, tested and simulated using a Hybrid-Dynamical modeling methodology. The design also replaces the classic quadrant detector tracking sensor with a wide dynamic range camera that provides a high precision solar position tracking signal as well as an image of the sky in the 45 field of view around the solar axis, which can be of great assistance in flagging data for cloud effects or other factors that might impact data quality.

We present a first view of data collected during a recent field campaign aimed at measuring biomass burning aerosol above clouds from airborne platforms. The NASA ObseRvations of CLouds above Aerosols and their intEractionS (ORACLES) field campaign recently concluded its first deployment sampling clouds and overlying aerosol layer from the airborne platform NASA P3. We present results from the Spectrometer for Sky-Scanning, Sun-Tracking Atmospheric Research (4STAR), in conjunction with the Solar Spectral Flux Radiometers (SSFR). During this deployment, 4STAR sampled transmitted solar light either via direct solar beam measurements and scattered light measurements, enabling the measurement of aerosol optical thickness and the retrieval of information on aerosol particles in addition to overlying cloud properties. We focus on the zenith-viewing scattered light measurements, which are used to retrieve cloud optical thickness, effective radius, and thermodynamic phase of clouds under a biomass burning layer. The biomass burning aerosol layer present above the clouds is the cause of potential bias in retrieved cloud optical depth and effective radius from satellites. We contrast the typical reflection based approach used by satellites to the transmission based approach used by 4STAR during ORACLES for retrieving cloud properties. It is suspected that these differing approaches will yield a change in retrieved properties since light transmitted through clouds is sensitive to a different cloud volume than reflected light at cloud top. We offer a preliminary view of the implications of these differences in sampling volumes to the calculation of cloud radiative effects (CRE).

The ORACLES (ObseRvations of Aerosols above CLouds and their intEractionS) campaign is taking place in the SouthEast Atlantic during the Austral Spring for three consecutive years from 20162018. The study area encompasses one of the Earths three semipermanent subtropical Stratocumulus (Sc) cloud decks,and experiences very large aerosol optical depths, mainly biomass burning, originating from Africa. Over time, cloud optical depth (COD), lifetime and cloud microphysics (number concentration, effective radii Reff and precipitation) are expected to be influenced by indirect aerosol effects. These changes play a key role in the energetic balance of the region, and are part of the core investigation objectives of the ORACLES campaign, which acquires measurements of clean and polluted scenes of above cloud aerosols (ACA). Simultaneous retrievals of aerosol and cloud optical properties are being developed (e.g. MODIS, OMI), butstill challenging, especially for passive, single viewing angle instruments. By comparison, multiangle polarimetric instruments like RSP (Research Scanning Polarimeter) show promise for detection and quantification of ACA, however, there are no operational retrieval algorithms available yet. Here we describe anew algorithm to retrieve cloud and aerosol optical properties from observations by RSP flown on the ER2and P3 during the 2016 ORACLES campaign. The algorithm is based on training a NN, and is intended to retrieve aerosol and cloud properties simultaneously. However, the first step was to establish the retrievalscheme for low level Sc cloud optical properties. The NN training was based on simulated RSP total and polarized radiances for a range of COD, Reff, and effective variances, spanning 7 wavelength bands and 152 viewing zenith angles. Random and correlated noise were added to the simulations to achieve a morerealistic representation of the signals. Before introducing the input variables to the network, the signals are projected on a principle component plane that retains the maximal signal information but minimizes the noise contribution. We will discuss parameter choices for the network and present preliminary results of cloudretrievals from ORACLES, compared with standard RSP low-levelcloud retrieval method that has been validated against in situ observations.

We present the validation analysis of above-cloud aerosol optical depth (ACAOD) retrieved from the color ratio method applied to MODIS cloudy-sky reflectance measurements using the limited direct measurements made by NASAs airborne Ames Airborne Tracking Sunphotometer (AATS) and Spectrometer for Sky-Scanning, Sun-Tracking Atmospheric Research (4STAR) sensors. A thorough search of the airborne database collection revealed a total of five significant events in which an airborne sun photometer, coincident with the MODIS overpass, observed partially absorbing aerosols emitted from agricultural biomass burning, dust, and wildfires over a low-level cloud deck during SAFARI-2000, ACE-ASIA 2001, and SEAC4RS 2013 campaigns, respectively. The co-located satellite-airborne match ups revealed a good agreement (root-mean-square difference less than 0.1), with most match ups falling within the estimated uncertainties associated with the MODIS retrievals (about -10 to +50 ). The co-retrieved cloud optical depth was comparable to that of the MODIS operational cloud product for ACE-ASIA and SEAC4RS, however, higher by 30-50% for the SAFARI-2000 case study. The reason for this discrepancy could be attributed to the distinct aerosol optical properties encountered during respective campaigns. A brief discussion on the sources of uncertainty in the satellite-based ACAOD retrieval and co-location procedure is presented. Field experiments dedicated to making direct measurements of aerosols above cloud are needed for the extensive validation of satellite based retrievals.

The Two-Column Aerosol Project (TCAP), conducted from June 2012 through June 2013, was a unique study designed to provide a comprehensive data set that can be used to investigate a number of important climate science questions, including those related to aerosol mixing state and aerosol radiative forcing. The study was designed to sample the atmosphere be tween and within two atmospheric columns; one fixed near the coast of North America (over Cape Cod, MA) and a second moveable column over the Atlantic Ocean several hundred kilometers from the coast. The U.S. Department of Energy (DOE) Atmospheric Radiation Measurement (ARM) Mobile Facility (AMF) was deployed at the base of the Cape Cod column, and the ARM Aerial Facility was utilized for the summer and winter intensive observation periods. One important finding from TCAP is that four of six nearly cloud-free flight days had aerosol layers aloft in both the Cape Cod and maritime columns that were detected using the nadir pointing second-generation NASA high-spectral resolution lidar (HSRL-2).These layer s contributed up to 60 of the total observed aerosol optical depth (AOD). Many of these layers were also intercepted by the aircraft configured for in situ sampling, and the aerosol in the layers was found to have increased amounts of biomass burning material and nitrate compared to aerosol found near the surface. In addition, while there was a great deal of spatial and day-to-day variability in the aerosol chemical composition and optical properties, no systematic differences between the two columns were observed.