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The 2014–2015 warm anomaly (aka "the Blob"), the largest of periodic and intensifying marine heat wave (MHW) perturbations in the northeast Pacific, may provide some insight about the future warmer ocean. Here, we use mixed‐layer carbon estimates for total phytoplankton, major size classes and functional groups from 45 CalCOFI cruises to: (1) compare 2014–2015 MHW impacts in the southern California Current System to baseline estimates from 2004 to 2013 and (2) to test a space‐for‐time exchange hypothesis that links biomass structure to variability of nitracline depth (NCD). Seasonal and inshore‐offshore analyses from nine stations revealed almost uniform 2°C MHW warming extending 700 km seaward, fourfold to sixfold declines in nitrate concentration and 18‐m deeper NCDs. Phytoplankton C decreased 16–21% compared to 45–65% for Chl a, with the threefold difference due to altered C : Chl a. Among size classes, percent composition of nanoplankton decreased and picophytoplankton increased, driven by higher Prochlorococcus biomass, while Synechococcus and picoeukaryotes generally declined. Diatom and dinoflagellate C decreased in both onshore and offshore waters. Seasonally, the MHW delayed the normal winter refresh of surface nitrate, resulting in depressed stocks of total phytoplankton and nanoplankton, Synechococcus and picoeukaryotes during winter. Consistent with the space‐for‐time hypothesis, biomass variations for baseline and MHW cruises followed similar (not significantly different) slope relationships to NCD. All biomass components, except Prochlorococcus, were negatively related to NCD, and community biomass structure realigned according to regression slopes differences with NCD variability. Empirically derived biomass‐NCD relationships could be useful for calibrating models that explore future food‐web impacts in this coastal upwelling system. [ABSTRACT FROM AUTHOR]

We investigated the spatial variability of picocyanobacterial community structure across the Costa Rica Dome (CRD), an offshore upwelling system characterized by high seasonal abundance of Synechococcus spp. We constructed clone libraries of the rpoC1 gene to survey picocyanobacterial diversity and developed specific real-time quantitative polymerase chain reaction assays to assess the distribution of genetically distinct Synechococcus (SYN) and Prochlorococcus (PRO) populations across vertical and horizontal physicochemical gradients. Flow cytometry data showed that cell abundances for both SYN and PRO were highest near the dome center. Phylogenetic analysis of rpoC1 sequences revealed a remarkably high and distinctive picocyanobacterial diversity (FLU1-3, CRD1, Clade II, XV, XVI) that included "novel" SYN and PRO genotypes. Furthermore, genetically different populations exhibited vertical and horizontal spatial partitioning. Abundances of distinct SYN genotypes peaked at subsequent depth horizons, leading to a fine vertical structure with at least three populations stacked within the upper 30-40 m at the dome. Clade II and FLU1A peaked in surface waters, while maximum concentrations of CRD1, FLU1B, and Clade XVI occurred in the upper and lower thermocline, respectively. Horizontally, Clade II abundance in surface waters remained high across the entire region, while SYN genotypes CRD1 and FLU1A increased with shoaling of the thermo- and nutricline toward the center of the dome to become the dominant genotypes of the SYN assemblage in the dome. Below the mixed layer, Clade XVI and PRO genotype FLU2, virtually absent outside the dome, became abundant components of the picocyanobacterial assemblage. Despite their phylogenetic relatedness, FLU1A and FLU1B subclades followed different distributional patterns, suggesting ecological significance of the microdiversity within the clade. The unprecedented fine vertical structure demonstrated for SYN genotypes is driven by sharp physicochemical gradients (e.g., density, nutrient, oxygen, and trace metals) created by the dome and the presence of a shallow oxycline that enhances habitat diversification. © 2014, by the Association for the Sciences of Limnology and Oceanography, Inc.

The uptake of 3H‐labeled leucine into proteins, a widely used method for estimating bacterial carbon production (BCP), is suggested to underestimate or overestimate bacterial growth in the open ocean by a factor of 40 uncertainty. Meanwhile, an alternative BCP approach, by the dilution method, has untested concerns about potential overestimation of bacterial growth from dissolved substrates released by filtration. We compared BCPDil and BCPLeu estimates from three cruises across a broad trophic gradient, from offshore oligotrophy to coastal upwelling, in the California Current Ecosystem. Our initial analyses based on midday microscopical estimates of bacterial size and a priori assumptions of conversions relationships revealed a mean two‐fold difference in BCP estimates (BCPDil higher), but no systematic bias between low and high productivity stations. BCPDil and BCPLeu both demonstrated strong relationships with bacteria cell abundance. Reanalysis of results, involving a different cell carbon‐biovolume relationship and informed by forward angle light scatter from flow cytometry as a relative cell size index, demonstrated that BCPDil and BCPLeu are fully compatible, with a 1 : 1 fit for bacteria of 5 fg C cell−1. Based on these results and considering different strengths of the methods, the combined use of 3H‐labeled leucine and dilution techniques provide strong mutually supportive constraints on bacterial biomass and production. [ABSTRACT FROM AUTHOR]

Phytoplankton growth and microzooplankton grazing rates were measured in repeated profiles of dilution experiments incubated in situ on a drift array in order to assess microbial production and food web characteristics in the oligotrophic bluefin tuna spawning habitat of the Gulf of Mexico (May peak spawning seasons, 2017–2018). Grazing often exceeded growth with the processes more balanced overall in the surface mixed layer, but biomass accumulated in the mid-euphotic zone. Community production estimates (260–500 mg C m−2 day−1) were low compared to similar open-ocean studies in the Pacific Ocean. Prochlorococcus was a consistent major contributor (113–204 mg C m−2 day−1) to productivity, while diatoms and dinoflagellates (2–10 and 4–13 mg C m−2 day−1, respectively) were consistently low. Prymnesiophytes, the most dynamic component (34–134 mg C m−2 day−1), co-dominated in 2017 experiments. Unexpected imbalances in grazing relative to production were observed for all picoplankton populations (Prochlorococcus , Synechococcus and heterotrophic bacteria), suggesting a trophic cascade in the absence of mesozooplankton predation on large microzooplankton. Study sites with abundant larval tuna had the shallowest deep chlorophyll maxima and significant net positive phytoplankton growth below the mixed layer. [ABSTRACT FROM AUTHOR]

Biomass and composition of the phytoplankton community were investigated in the deep-water Gulf of Mexico (GoM) at the edges of Loop Current anticyclonic eddies during May 2017 and May 2018. Using flow cytometry, high-performance liquid chromatography pigments and microscopy, we found euphotic zone integrated chlorophyll a of ~10 mg m−2 and autotrophic carbon ranging from 463 to 1268 mg m−2, dominated by picoplankton (<2 μm cells). Phytoplankton assemblages were similar to the mean composition at the Bermuda Atlantic Time-series Study site, but differed from the Hawaii Ocean Times-series site. GoM phytoplankton biomass was ~2-fold higher at the deep chlorophyll maximum (DCM) relative to the mixed layer (ML). Prochlorococcus and prymnesiophytes were the dominant taxa throughout the euphotic zone; however, other eukaryotic taxa had significant biomass in the DCM. Shallower DCMs were correlated with more prymnesiophytes and prasinophytes (Type 3) and reduced Prochlorococcus. These trends in ML and DCM taxonomic composition likely reflect relative nutrient supply—with ML populations relying on remineralized ammonium as a nitrogen source, and the taxonomically diverse DCM populations using more nitrate. These spatially separated phytoplankton communities represent different pathways for primary production, with a dominance of picoplankton in the ML and more nano- and microplankton at the DCM. [ABSTRACT FROM AUTHOR]

We used linear inverse ecosystem modeling techniques to assimilate data from extensive Lagrangian field experiments into a mass-balance constrained food web for the Gulf of Mexico open-ocean ecosystem. This region is highly oligotrophic, yet Atlantic bluefin tuna (ABT) travel long distances from feeding grounds in the North Atlantic to spawn there. Our results show extensive nutrient regeneration fueling primary productivity (mostly by cyanobacteria and other picophytoplankton) in the upper euphotic zone. The food web is dominated by the microbial loop (>70% of net primary productivity is respired by heterotrophic bacteria and protists that feed on them). By contrast, herbivorous food web pathways from phytoplankton to metazoan zooplankton process <10% of the net primary production in the mixed layer. Nevertheless, ABT larvae feed preferentially on podonid cladocerans and other suspension-feeding zooplankton, which in turn derive much of their nutrition from nano- and micro-phytoplankton (mixotrophic flagellates, and to a lesser extent, diatoms). This allows ABT larvae to maintain a comparatively low trophic level (~4.2 for preflexion and postflexion larvae), which increases trophic transfer from phytoplankton to larval fish. [ABSTRACT FROM AUTHOR]

The availability of nitrogen (N) in ocean surface waters affects rates of photosynthesis and marine ecosystem structure. In spite of low dissolved inorganic N concentrations, export production in oligotrophic waters is comparable to more nutrient replete regions. Prior observations raise the possibility that di-nitrogen (N2) fixation supplies a significant fraction of N supporting export production in the Gulf of Mexico. In this study, geochemical tools were used to quantify the relative and absolute importance of both subsurface nitrate and N2 fixation as sources of new N fueling export production in the oligotrophic Gulf of Mexico in May 2017 and May 2018. Comparing the isotopic composition ("δ15N") of nitrate with the δ15N of sinking particulate N collected during five sediment trap deployments each lasting two to four days indicates that N2 fixation is typically not detected and that the majority (≥80%) of export production is supported by subsurface nitrate. Moreover, no gradients in upper ocean dissolved organic N and suspended particulate N concentration and/or δ15N were found that would indicate significant N2 fixation fluxes accumulated in these pools, consistent with low Trichodesmium spp. abundance. Finally, comparing the δ15N of sinking particulate N captured within vs. below the euphotic zone indicates that during late spring regenerated N is low in δ15N compared to sinking N. [ABSTRACT FROM AUTHOR]

The highly stratified, oligotrophic regions of the oceans are predominantly nitrogen limited in the surface ocean and light limited at the deep chlorophyll maximum (DCM). Hence, determining light and nitrogen co-limitation patterns for diverse phytoplankton taxa is crucial to understanding marine primary production throughout the euphotic zone. During two cruises in the deep-water Gulf of Mexico, we measured primary productivity (H13CO3−), nitrate uptake (15NO3−) and ammonium uptake (15NH4+) throughout the water column. Primary productivity declined with depth from the mixed layer to the DCM, averaging 27.1 mmol C m−2 d−1. The fraction of growth supported by NO3− was consistently low, with upper euphotic zone values ranging from 0.01 to 0.14 and lower euphotic zone values ranging from 0.03 to 0.44. Nitrate uptake showed strong diel patterns (maximum during the day), whereas ammonium uptake exhibited no diel variability. To parameterize taxon-specific phytoplankton nutrient and light utilization, we used a data assimilation approach (Bayesian Markov Chain Monte Carlo) including primary productivity, nutrient uptake and taxon-specific growth rate measurements. Parameters derived from this analysis define distinct niches for five phytoplankton taxa (Prochlorococcus , Synechococcus , diatoms, dinoflagellates and prymnesiophytes) and may be useful for constraining biogeochemical models of oligotrophic open-ocean systems. [ABSTRACT FROM AUTHOR]

During two cruises in the oligotrophic oceanic Gulf of Mexico, we deployed sediment traps at three depths: center of the euphotic zone (EZ) (60 m), base of the EZ (117–151 m), and in the twilight zone (231 m). Organic carbon export declined with depth from 6.4 to 4.6 to 2.4 mmol C m−2 d−1, suggesting that net particle production was concentrated in the upper EZ. Net primary production varied from 24 to 29 mmol C m−2 d−1, slightly more than half in the upper EZ. Export ratios varied from 11 to 25%. Trap measurements of chlorophyll and phaeopigments allowed us to quantify fluxes of fresh phytoplankton and herbivorous fecal pellets, respectively, which were both minor contributors to total flux, although their contributions varied with depth. Phytoplankton flux was more important from the upper to lower EZ; fecal pellets were more important at the EZ base and below. C:N elemental ratios and 13C and 15N isotope analyses indicated particle transformations within and beneath the EZ. 234Th-238U disequilibrium measurements varied, likely reflecting the mixing of water from multiple regions over the ~month-long time-scale of 234Th. Our results highlight the complexity of the biological carbon pump in oligotrophic regions. [ABSTRACT FROM AUTHOR]