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Conservation and management of chondrichthyans are becoming increasingly important, as many species are particularly vulnerable to fishing activities, primarily as bycatch, which leads to incomplete catch reporting, potentially hiding the impact on these organisms. Here, we aimed at implementing an eDNA metabarcoding approach to reconstruct shark and ray bycatch composition from 24 hauls of a bottom trawl fishing vessel in the central Mediterranean. eDNA samples were collected through the passive filtration of seawater by simple gauze rolls encapsulated in a probe (the “metaprobe”), which already showed great efficiency in detecting marine species from trace DNA in the environment. To improve molecular taxonomic detection, we enhanced the 12S target marker reference library by generating sequences for 14 Mediterranean chondrichthyans previously unrepresented in public repositories. DNA metabarcoding data correctly identifies almost all bycaught species and detected five additional species not present in the net, highlighting the potential of this method to detect rare species. Chondrichthyan diversity showed significant association with some key environmental variables (depth and distance from the coast) and the fishing effort, which are known to influence demersal communities. As DNA metabarcoding progressively positions itself as a staple tool for biodiversity monitoring, we expect that its melding with opportunistic, fishery-dependent surveys could reveal additional distribution features of threatened and elusive megafauna.

The honeycomb worm Sabellaria alveolata is a gregarious tube-dwelling polychaete that builds remarkable biogenic reefs in marine coastal waters. Sabellaria alveolata reefs are considered valuable marine habitats requiring protection measures for their conservation, as they play a key role in the functioning of coastal ecosystems. Sabellarid reefs are extensively developed along the Atlantic coasts of Europe and reported for the Mediterranean Sea and the Italian coasts, where large reefs have been recorded in several localities. Fragmentary information is available on their health status, Sabellaria reefs thus being listed as “Data Deficient” in the Red List of Marine Habitats. To fill this knowledge gap, this study focused on the analysis of the structure of three reefs found along the southern coast of Sicily. In particular, we aimed to assess their phases with respect to the natural cycle that characterizes the sabellarid reefs. Reef features were analyzed both on the macroscale, based on the bioconstruction size (diameter and thickness) and degree of fragmentation, and on the microscale, based on the measurement of worm density, opercular length and sand porch presence. This study reveals relevant differences among reefs of the studied locations. These differences we attributeto the temporal shift linked to the natural reef phases, albeit further analyses are needed to understand the possible effect of natural and anthropogenic sources of variation on the Southern Sicilian reefs. In conclusion, Sabellaria reefs are a unique and persistent habitat along the Sicilian coast requiring proper management and conservation measures.

In 2020 and 2021, fish-kills events occurred in the Tiber river in the city of Rome. These events, which caused the death of thousands of fish of different species (e.g., Barbus spp., Cyprinus carpio, Squalius spp.), were preceded the days before by severe flash-storms. Heavy rains in urban areas in recent years are linked to climate change and fish-kills events. With the aim to investigate the causes of these events, effect-based methods (EBMs) and targeted chemical analyses have been performed on a specific site of river Tiber in the center of the city. Additionally, examination and classification of the floating dead fishes have been performed. The chemical analysis performed on several groups of contaminants showed the presence of some pharmaceuticals, insecticides, and PFAS at up to ng/L. Results with the Fish Embryo Toxicity (FET) test confirmed lethal and sub-lethal effects, while acute effects were not detected with the Daphnia magna acute test. The fish-kills events probably can be generated by several factors as a consequence of an increasing human anthropization of the area with the contribution of different stressors together with chemical releases and emissions. This study shows that in multiple stressor scenarios characterized by heavy rainfall, droughts, and strong anthropogenic pressures, the application of EBMs, chemical analysis, and fish assemblage examinations can represent a useful support in the investigation of the causes of extensive fish-kills events.

Gilthead seabream (Sparus aurata) production is a highly valued aquaculture industry in Europe. The presence of skeletal deformities in farmed gilthead seabream represents a major bottleneck for the industry leading to economic losses, negative impacts on the consumers’ perception of aquaculture, and animal welfare issues for the fish. Although past work has primarily focused on the hatchery phase to reduce the incidence of skeletal anomalies, this work targets the successive preongrowing phase in which more severe anomalies affecting the external shape often arise. This work aimed to test the effects of: (i) larger and smaller tank volumes, stocked at the same density; and (ii) higher and lower stocking densities maintained in the same water volume, on the skeleton of gilthead seabream fingerlings reared for ~63 days at a pilot scale. Experimental rearing was conducted with gilthead seabream juveniles (~6.7 ± 2.5 g), which were selected as ‘non-deformed’ based on external inspection, stocked at three different densities (Low Density (LD): 5 kg/m3 ; Medium Density (MD): 10 kg/m3 ; High Density (HD): 20 kg/m3 ) in both 500 L and 1000 L tanks. Gilthead seabream were sampled for growth performance and radiographed to assess the skeletal elements at the beginning and end of the experimental trial. Results revealed that (i) LD fish were significantly longer than HD fish, although there were no differences in final weights, regardless of the water volume; (ii) an increase in the prevalence of seabream exhibiting cranial and vertebral axis anomalies was found to be associated with increased density. These results suggest that farmers can significantly reduce the presence of some cranial and axis anomalies affecting pre-ongrown gilthead seabream by reducing the stocking density. LA/P/0101/2020 Mar2020-P02M01-0656P info:eu-repo/semantics/publishedVersion

Filter-feeding mussels blend suspended particles into faeces and pseudo-faeces enhancing organic matter flows between the water column and the bottom, and strengthening benthic-pelagic coupling. Inside operating farms, high bivalve densities in relatively confined areas result in an elevated rate of organic sinking to the seabed, which may cause a localized impact in the immediate surrounding. Deposit-feeding sea cucumbers are potentially optimal candidates to bioremediate mussel organic waste, due to their ability to process organic-enriched sediments impacted by aquaculture waste. However, although the feasibility of this polyculture has been investigated for a few Indo-Pacific species, little is known about Atlanto-Mediterranean species. Hence, for the first time, in the present study, we conducted a comparative investigation on the suitability of different Mediterranean sea cucumber species, to be reared in Integrated Multitrophic Aquaculture (IMTA) with mussels. A pilot-scale experiment was accomplished operating within a mussel farm where two sea cucumbers species, Holothuria tubulosa and Holothuria polii, were caged beneath the long-line mussel farm of Mytilus galloprovincialis. After four months, H. tubulosa showed high survivorship (94%) and positive somatic growth (6.07%); conversely H. polii showed negative growth (− 25.37%), although 92% of specimens survived. Furthermore, sea cucumber growth was size-dependent. In fact, smaller individuals, independently from the species, grew significantly faster than larger ones. These results evidenced a clear difference in the suitability of the two sea cucumber species for IMTA with M. galloprovincialis, probably due to their different trophic ecology (feeding specialization on different microhabitats, i.e. different sediment layers). Specifically, H. tubulosa seems to be an optimal candidate as extractive species both for polycultures production and waste bioremediation in M. galloprovincialis operating farms.

Accurate data on community structure is a priority issue in studying coastal habitats facing human pressures. The recent development of remote sensing tools has offered a ground-breaking way to collect ecological information at a very fine scale, especially using low-cost aerial photogrammetry. Although coastal mapping is carried out using Unmanned Aerial Vehicles (UAVs or drones), they can provide limited information regarding underwater benthic habitats. To achieve a precise characterisation of underwater habitat types and species assemblages, new imagery acquisition instruments become necessary to support accurate mapping programmes. Therefore, this study aims to evaluate an integrated approach based on Structure from Motion (SfM) photogrammetric acquisition using low-cost Unmanned Aerial (UAV) and Surface (USV) Vehicles to finely map shallow benthic communities, which determine the high complexity of coastal environments. The photogrammetric outputs, including both UAV-based high (sub-meter) and USV-based ultra-high (sub-centimetre) raster products such as orthophoto mosaics and Digital Surface Models (DSMs), were classified using Object-Based Image Analysis (OBIA) approach. The application of a supervised learning method based on Support Vector Machines (SVM) classification resulted in good overall classification accuracies > 70%, proving to be a practical and feasible tool for analysing both aerial and underwater ultra-high spatial resolution imagery. The detected seabed cover classes included above and below-water key coastal features of ecological interest such as seagrass beds, “banquettes” deposits and hard bottoms. Using USV-based imagery can considerably improve the identification of specific organisms with a critical role in benthic communities, such as photophilous macroalgal beds. We conclude that the integrated use of low-cost unmanned aerial and surface vehicles and GIS processing is an effective strategy for allowing fully remote detailed data on shallow water benthic communities.

Seagrasses harbour bacterial communities with which they constitute a functional unit called holobiont that responds as a whole to environmental changes. Epiphytic bacterial communities rapidly respond to both biotic and abiotic factors, potentially contributing to the host fitness. The Lessepsian migrant Halophila stipulacea has a high phenotypical plasticity and harbours a highly diverse epiphytic bacterial community, which could support its invasiveness in the Mediterranean Sea. The current study aimed to evaluate the Halophila/Cymodocea competition in the Aegean Sea by analysing each of the two seagrasses in a meadow zone where these intermingled, as well as in their monospecific zones, at two depths. Differences in holobionts were evaluated using seagrass descriptors (morphometric, biochemical, elemental, and isotopic composition) to assess host changes, and 16S rRNA gene to identify bacterial community structure and composition. An Indicator Species Index was used to identify bacteria significantly associated with each host. In mixed meadows, native C. nodosa was shown to be affected by the presence of exotic H. stipulacea, in terms of both plant descriptors and bacterial communities, while H. stipulacea responded only to environmental factors rather than C. nodosa proximity. This study provided evidence of the competitive advantage of H. stipulacea on C. nodosa in the Aegean Sea and suggests the possible use of associated bacterial communities as an ecological seagrass descriptor.

The use of tracking devices, such as vessel monitoring systems or automatic identification system, enabled us to expand our knowledge on the distribution and quantification of fishing activities. However, methods and models based on vessel tracking data are mostly devised to be applied to towed gears, whereas applications to multi-gear and passive fisheries have been underrepresented. Here, we propose a methodology to deal with geospatial data to map and quantify the fishing effort, as soak time, of passive fishing gears used by a multi-gear fishing fleet. This approach can be adapted to other passive multi-or single-gear fisheries, since it requires only three variables that can be extracted from a pre-classified dataset, to identify the beginning (gear deployment) and the end (hauling) of passive fishing events. As far as we are aware, this is the first time a methodology that allows quantifying the soak time of static passive fishing events, within a polyvalent fishery context, is presented. We argue that the information that can be extracted from such approaches could contribute to improved management of multi-gear and static-gear fisheries and the ecosystem-based approach. LA/P/0101/2020 info:eu-repo/semantics/publishedVersion

Phytoplankton primary production is a key oceanographic process. It has relationships with marine-food-web dynamics, the global carbon cycle and Earth's climate. The study of phytoplankton production on a global scale relies on indirect approaches due to the difficulties of field campaigns. Modeling approaches require in situ data for calibration and validation. In fact, the need for more phytoplankton primary-production data was highlighted several times during the last decades. Most of the available primary-production datasets are scattered in various repositories, reporting heterogeneous information and missing records. We decided to retrieve field measurements of marine phytoplankton production from several sources and create a homogeneous and ready-to-use dataset. We handled missing data and added variables related to primary production which were not present in the original datasets. Subsequently, we performed a general analysis highlighting the relationships between the variables from a numerical and an ecological perspective. Data paucity is one of the main issues hindering the comprehension of complex natural processes. We believe that an updated and improved global dataset, complemented by an analysis of its characteristics, can be of interest to anyone studying marine phytoplankton production and the processes related to it. The dataset described in this work is published in the PANGAEA repository (https://doi.org/10.1594/PANGAEA.932417) (Mattei and Scardi, 2021).

The loggerhead sea turtle, Caretta caretta (Linnaeus, 1758), is the most common sea turtle species in the Mediterranean Sea, where it can experience severe anthropogenic impacts. Although C. caretta is known to host more than 200 epibiotic taxa (crustaceans, algae and cyanobacteria), no reports have included a detailed evaluation of the microbial community of its carapace scutes. Thus, this study aimed to determine the diversity and composition of the visible and invisible communities on the carapace scutes of wild loggerhead turtles from the Aeolian Archipelago (Southern Tyrrhenian Sea, Italy) by using a combined approach of morphological/spatial examination and molecular analyses. Altogether, our results displayed a higher abundance of crustaceans, macroalgae and Proteobacteria on the posterior carapace scutes, while Firmicutes were more abundant on the anterior scutes. For the first time, this study showed the complexity of the microbial (invisible) and visible epibionts of the loggerhead sea turtles from the Mediterranean Sea and suggests the importance of including evaluation of the microbial components when studying epibiont communities.

Globalization and urbanization are new challenges for the ability to protect public health. Indeed, the anthropogenic impact is changing the environment on a global scale. These changes can have direct and indirect health effects on both human and animal populations, introducing new diseases. Heat waves and floods are an example of these changes. Global Environmental Change (GEC) consequences on human health and well-being are stronger in urban areas, which are inhabited by 70% of the European population. In this context, the use of appropriate medical devices can also help mitigate the effects of climate change. Studies into lifestyle, environment quality and potential fields of application can be useful tools to identify possible types of medical device that could help to support the therapeutic needs and the prevention of health both in everyday life, and in the case of environmental alerts. A study was carried out on the potential role of medical devices (MDs) in mitigating the effects of GEC on human and animal health, by issuing two different questionnaires to specific professional clusters: the first to doctors, pharmacists, and veterinarians, the second to MD manufacturers. The data obtained from this study confirm the strong connection between GEC and the increase in the use of some MDs. Results obtained from questionnaires circulated to MD manufacturers confirmed this trend. MD manufacturers also declared that there are no longer any seasonal trends in market demand for some medical devices. This is a pilot study to consider MDs as a mitigation tool for CEGs.

The dramatic Mass Mortality Event, MME, of Pinna nobilis populations initially detected in the western Mediterranean basin, has also spread rapidly to the central and eastern basin. Unfortunately, there is still a significant lack of information on the status and health of P. nobilis, since only a fragmentary picture of the mortality rate affecting these populations is available. Regarding the Italian coast, several surveys have given only localized or point-like views on the distribution of species and the effect of the MME. Therefore, for the first time, this study investigated P. nobilis density of individuals, distribution and mortality throughout 161 surveys along 800 km of coastline in the Apulia region (South-east of Italy). The geographical scale of this investigation made it the largest ever conducted in Italy, and this was achieved through a rapid and standardized protocol. During this monitoring campaign, 90 km of linear underwater transects were surveyed, along which no live individuals were observed. This result allowed to estimate that the P. nobilis populations had totally collapsed, with a mortality rate of 100% in Apulia. The distributional pattern of the species showed a strong overlap with seagrass meadows on meso- and macro-geographical scale, however this was not the case on a micro-scale. This result evidenced that relationships between P. nobilis and seagrass meadows are not limited to the habitat patch, but cross the boundaries of seagrass leading us to suggest that the distribution of P. nobilis hold a trophic link through the cross-boundary subsidy occurring from seagrass meadows to the nearby habitat, by means of the refractory detrital pathway.

The assessment of the spatial overlap between eligible cetacean conservation areas (CCAs) and fishing grounds could be a strategic element in the implementation of effective conservation measures in the pelagic offshore areas. A multi-species bio-economic modelling approach has been applied to estimate the fishing traits in eligible CCAs in the Northern Ionian Sea (NIS, Central Mediterranean Sea) between 10-800 m of depth, adopting the Spatial MAnagement of demersal Resources for Trawl fisheries model (SMART). Four possible CCAs were defined according to the distribution of cetacean species, their bio-ecological needs, as well as socio-economic needs of human activities, identifying a Blue, Red, Orange and Green CCAs in the NIS. SMART spatial domain was a grid with 500 square cells (15×15 NM). The analysis was conducted for the period 2016-2019, considering the Otter Trawl Bottom (OTB) fleet activities in the study areas through the Vessel Monitoring System. The spatial extension of fishing activities, hourly fishing effort (h), landings (tons) and economic value (euros) for each CCA and the NIS were estimated as yearly median values. Fishing activities were absent in the Blue CCA, where the presence of the submarine canyon head does not offer accessible fishing grounds. The hourly fishing effort in the Green area accounted for about 22% (3443 h) of the total hourly effort of the NIS, while the Orange and Red areas were about 8% (1226 h) and 2% (295 h), respectively. The Green CCA corresponded to about 14% (36 tons) of the total landings in the NIS, whereas the Orange and Red areas represented about 9% (22 tons) and 6% (16 tons), respectively. The Green CCA accounted for about 13% (156 thousand euros) of the total economic value of the NIS, while the Orange and Red areas represented about 6% (69 thousand euros) and 4% (44thousand euros), respectively. Results showed no or negligible negative effects on trawl activities by potential spatial restrictions due to the establishment of CCAs highlighting the importance to consider spatially integrated information during the establishment process of conservation areas for cetacean biodiversity according to the principles of Ecosystem Based Management.

The extraordinary polymorphism of major histocompatibility complex (MHC) genes is considered a paradigm of pathogen‐mediated balancing selection, although empirical evidence is still scarce. Furthermore, the relative contribution of balancing selection to shape MHC population structure and diversity, compared to that of neutral forces, as well as its interaction with other evolutionary processes such as hybridization, remains largely unclear. To investigate these issues, we analyzed adaptive (MHC‐DAB gene) and neutral (11 microsatellite loci) variation in 156 brown trout (Salmo trutta complex) from six wild populations in central Italy exposed to introgression from domestic hatchery lineages (assessed with the LDH gene). MHC diversity and structuring correlated with those at microsatellites, indicating the substantial role of neutral forces. However, individuals carrying locally rare MHC alleles/supertypes were in better body condition (a proxy of individual fitness/parasite load) regardless of the zygosity status and degree of sequence dissimilarity of MHC, hence supporting balancing selection under rare allele advantage, but not heterozygote advantage or divergent allele advantage. The association between specific MHC supertypes and body condition confirmed in part this finding. Across populations, MHC allelic richness increased with increasing admixture between native and domestic lineages, indicating introgression as a source of MHC variation. Furthermore, introgression across populations appeared more pronounced for MHC than microsatellites, possibly because initially rare MHC variants are expected to introgress more readily under rare allele advantage. Providing evidence for the complex interplay among neutral evolutionary forces, balancing selection, and human‐mediated introgression in shaping the pattern of MHC (functional) variation, our findings contribute to a deeper understanding of the evolution of MHC genes in wild populations exposed to anthropogenic disturbance., We investigate evolutionary mechanisms shaping genetic structure and diversity at the major histocompatibility complex class II gene (MHC‐DAB) in wild populations of Mediterranean brown trout (Salmo trutta L. complex) exposed to introgression from domestic (hatchery) lineages. We reveal the role of historical positive selection and current balancing selection (rare‐allele advantage, but not heterozygote advantage or divergent allele advantage) to mantaining high MHC (functional) polymorhism. Also, we provide evidence for the interplay between genetic drift and human‐mediated introgression to shape MHC diversity and population structure.

A widespread and diversified mesophotic system of carbonate bioconstructions along the Southern Adriatic and Ionian Italian coasts is described, providing new data on the distribution, structure and associated megabenthic assemblages of mesophotic Mediterranean bioconstructions. The bioconstructions were detected at six different sites off the coasts of Apulia, in presence of marked morphological escarpments, developing on a basal substrate consisting of meso-Cenozoic carbonate rocks. Two biogenic structure types were observed, one mainly built by the nonsymbiotic scleractinians Phyllangia americana mouchezii and Polycyathus muellerae, at depths between approximately 35 and 55 m, and the other by the oyster Neopycnodonte cochlear, at depths from approximately 40 to 70 m. A total of 52 taxa of megabenthic invertebrates, belonging to 6 phyla, were found on the surface of the mesophotic bioconstructions, thus confirming the role of biodiversity hotspots of these carbonate structures. Megabenthic assemblages showed a remarkable heterogeneity both in pattern of species and abundance, probably depending on both the morphological differences of the seabed and the life traits of the single species. Primary bioconstructors seemed to influence the associated community pattern. This peculiar system deserves sound conservation measures in the light of the holistic ecosystem approach for the management of coastal marine areas.

Investigations on trophic requirements of different life cycle stages of Paracentrotus lividus are crucial for the comprehension of species ecology and for its artificial rearing. The future success of echinoculture depends heavily on the development of suitable and cost-effective diets that are specifically designed to maximize somatic growth during the early life stages and gonadal production in the later stages. In this context, a considerable number of studies have recommended animal sources as supplements in sea urchin diets. However, with the exception of Fernandez and Boudouresque (2000), no studies have investigated the dietary requirements over the different life stages of the sea urchin. In the present study, the growth and nutrition of three life stages of P. lividus (juveniles: 15-25 mm; subadults: 25-35 mm; adults: 45-55 mm) were analyzed over a 4-month rearing experiment. Three experimental diets, with 0%, 20% and 40% of animal sourced enrichments, were tested in parallel in sea urchin three size classes. The food conversion ratio, somatic and gonadal growth were assessed in each condition in order to evaluate the optimal level of animal-sourced supplements for each life stage. A general growth model covering the full post-metamorphic P. lividus life cycle was defined for each condition. During the juvenile stage P. lividus requires higher animal supply (40%), while a feeding requirement shift takes place toward lower animal supply (20%) in sub-adult and adult stages. Our results evidenced that the progressive increase in size after the metamorphosis led to a consequent variation of trophic requirements and food energy allocation in the sea urchin P. lividus. Macronutrient requirements varied widely during the different life stages, in response to changes in the energy allocation from somatic growth to reproductive investment. This study sheds light on P. lividus trophic ecology, broadening our basic knowledge of the dietary requirements of juveniles, sub-adults and adults as a function of their behavior also in the natural environment.

Italy hosts a large number of endemic freshwater fish species due to complex geological events which promoted genetic differentiation and allopatric speciation. Among them, the South European roach Sarmarutilus rubilio inhabits various freshwater environments in three different ichthyogeographic districts. We investigated the genetic diversity of S. rubilio using two different mitochondrial markers (COI and CR), aiming to define its relationship with other similar taxa from the Balkan area and, from a phylogeographic perspective, test the effects of past hydrogeological dynamics of Italian river basins on its genetic structure and demographic history. Our analysis highlighted a marked genetic divergence between S. rubilio and all other roach species and, among Italian samples, revealed the existence of three deeply divergent geographic haplogroups, named A, B and C. Haplogroup C likely corresponds to a new putative cryptic species and is located at the northern border of the South European roach range; haplogroup B is restricted to Southern Italy; and haplogroup A is widespread across the entire range and in some sites it is in co-occurrence with C or B. Their origin is probably related to the tectonic uplifting of the Apuan Alps in the north and of the Colli Albani Volcano in the south during the Pleistocene, which promoted isolation and vicariance followed by secondary contacts.

Invaders affect native species across multiple trophic levels, influencing the structure and stability of freshwater communities. Based on the ‘trophic position hypothesis’, invaders at the top of the food web are more harmful to native species via direct and indirect effects than trophically analogous native predators are. However, introduced and native predators can coexist, especially when non-native species have no ecological and behavioural similarities with natives, occupy an empty niche, or natives show generalist anti-predator strategies that are effective at the community level. At present, conservation efforts are focused on eradicating invaders; however, their removal may lead to unwanted and unexpected outcomes, especially when invaders are well established and strongly interspersed with natives. This highlights the need to consider invaders in a whole-ecosystem context and to consider the evolutionary history and behavioural ecology of natives and invaders before active management is applied. Here, stomach content and stable isotope analyses were combined to investigate a pond system dominated by invaders in order to understand the effects of the interactions among upper level predators and lower level members of the food web on the whole community structure. Both diet and isotope analyses showed that several invaders contributed to the diet of natives and invaders. A significant isotope overlap was found among upper level predators. However, stomach content analysis suggested that predators reduced the potential competition differentiating the food spectrum by including additional prey in their diet. Both native and non-native upper level predators, by preying on invaders, seem not to exert a strong suppressive effect through predation and competition on native species. This research confirms the importance of studying food webs to identify ecological conditions that forecast the potential for deleterious impacts before management is applied. In cases where invaders cannot be eradicated, management efforts should follow a conciliatory approach promoting the coexistence of native species with invaders.

The Tremiti Islands Archipelago is located in the Central-Southern Adriatic Sea and is characterized by a strong karst activity. Due to their landscape, geological, hydrological, archaeological, and historical value, Tremiti Islands are considered a geomorphosite. We carried out a preliminary, non-destructive survey by studying the speleological and biological features of the submerged sea cave Elle, located at Cala Sorrentino (Capraia Island), representing an EU Natura 2000 Priority Habitat. Topographic (perimeter length, width, height, GPS location, depth) and hydrological parameters (temperature, dissolved oxygen, pH, irradiance, water movement) were measured and its map was produced, based on morphological measurements and biological evidence. Species composition and biotic cover were investigated by image analysis. The benthic community was dominated by poriferans, together with remarkable assemblages of scleractinians and polychaete serpulids and clearly reflected the sharp light and hydrological gradients from the entrance to the cave bottom. Furthermore, different phases were hypothesized for the genesis of the cave during sea regression and flooding periods. To be signaled is the record of Petrobiona massiliana, a sponge was protected under both Barcelona and Bern Convention and of some individuals of polychaete Serpulinae, which are still under description.

The presence of plastic waste in the marine environment has driven the scientific community to make significant efforts to study and mitigate its possible effects. One of the critical aspects is to determine if and how an increase in ingestion events may occur as a result of the accumulation of plastic waste on the seabed. In this study, G. melastomus is examined for its ability to indirectly provide information on the amount of macroplastics accumulating on the seafloor. Plastic ingestion is explored by describing the feeding habits of the species, which have the potential to provide very useful information regarding biological or ecological issues. The diet of G. melastomus mainly consisted of cephalopods, bathypelagic fishes, and decapod crustaceans, increasing in diversity during growth. The generalist-opportunistic feeding behaviour of this species leads to the incidental ingestion of plastic particles (N = 47, with a mean (± SD) of 1.47 ± 0.28 per specimen) which can be indirectly associated to the presence of macroplastics on the seafloor. Indeed, our results indicate a significant relationship between the amount of macroplastics present on the seabed and the frequency of ingestion of plastic particles by blackmouth catshark. We propose G. melastomus as an excellent candidate for developing a valid monitoring strategy for the presence of plastics on the seabed, as requested by the EU Marine Strategy Framework Directive.

This paper presents an analysis of the effect of SARS-CoV-2 coronavirus pandemic and related restrictive measures on the activity of the Italian fleet of trawlers, which represents one of the most important fisheries in the Mediterranean Sea. We integrated multiple sources of information including: (1) Fleet activity data from Vessel Monitoring System, the most important satellite-based tracking device; (2) vessel-specific landing data disaggregated by species; (3) market and economic drivers affecting the effort variation during the lockdown and in the related fishing strategies; (4) monthly landings of demersal species in the main Italian harbors. These data sources are combined to: (1) Assess the absolute and relative changes of trawling effort in the geographical sub-areas surrounding the Italian coasts; (2) integrate and compare these changes with the market and economic drivers in order to explain the observed changes in fishing effort and strategy; (3) analyze the changes of the fishing effort on the Landing-per-unit-effort (LPUE) in order to further understand the strategy adopted by fishers during this crisis and to infer the potential consequence for the different stocks. The results provide an overview of the effects of the “COVID-19 shock,” in terms of fishing activity and socio-economic drivers, demonstrating that the consequences of the pandemic have been very varied. Although the COVID-19 shock has caused a marked overall reduction in activity in the first semester of 2020, in some cases the strategies adopted by fishermen and the commercial network linked to their activity have significantly reduced the impact of the emergency and taken back catch and effort to levels similar to those of previous years. These results could provide insights for management measures based on temporal stops of fishing activities. In particular, if no limits to the fishing effort after the restart of fishing activities are adopted, the benefits of fishing pressure reduction on fishery resources could be nullified. On the other hands, when fishing activities restart, and in the absence of catch control, effort tends to increase on coastal bottoms characterized by greater abundance of resources and longer effective fishing time.

The global need to monitor the status of marine resources is a priority task in marine management, but most ocean surveys still rely on costly and time-consuming capture-based techniques. Here we test a novel, easy-to use device to collect eDNA on board of bottom trawl fishing vessels, during normal fishing operations, quickly and easily: custom-made rolls of gauze tied to a hollow perforated spherical probe (the ‘metaprobe’) that placed inside the fishing net aims to gather traces of genetic material from the surrounding environment. We collected six samples from three central Tyrrhenian sites. Using an established fish-specific metabarcoding marker, we recovered over 70% of the caught species and accurately reconstructed fish assemblages typical of the different bathymetric layers considered. eDNA metabarcoding data also returned a biodiversity ‘bonus’ of mostly mesopelagic species, not catchable by bottom trawls. Further investigation is needed to upscale this promising approach as a powerful tool to monitor catch composition, assess the distribution of stocks, and generally record changes in fish communities across the oceans.

The economic performances of four trawling fleets (those of the Sicilian cities of Trapani, Sciacca, Licata and Porto Palo di Capo Passero) operating in the coastal waters along the southern coast of Sicily (geographical Subarea 16), and potentially affected by the establishment of the Fisheries Restricted Areas (FRAs), were analysed. The main economic performance results (revenues, costs and profits) of 37 trawlers were calculated prior to the implementation of FRAs and compared with those estimated by the spatial bio-economic model SMART after the FRAs’ establishment. Results showed that the fleets of Sciacca and Licata, located in the central part of the southern Sicilian coast, had a short-term reduction of profits as a result of the implementation of the FRAs; conversely, a short-term increase in the economic performances of Trapani and Porto Palo di Capo Passero fleets was expected. Although the FRAs represent a good tool for rebuilding overexploited stocks, the different socio-economic impacts of the single fleets should be assessed before adopting them and the implementation of specific compensative measures should be planned for the impacted fleet until a more productive state of the stock is reached.

Disentangling the effects of mixed fisheries and climate change across entire food-webs requires a description of ecosystems using tools that can quantify interactive effects as well as bio-economic aspects. A calibrated dynamic model for the Sicily Channel food web, made up of 72 functional groups and including 13 fleet segments, was developed. A temporal simulation until 2050 was conducted to evaluate the bio-economic interactive effects of the reduction of bottom trawling fishing effort by exploring different scenarios that combine fishery and climate change. Our results indicate that direct and indirect effects produce a net increase in biomass of many functional groups with immediate decline of trawlers’ catches and economic incomes, followed by a long term increase mainly due to biomass rebuilding of commercial species which lasts 5-10 years after fishing reduction. Synergistic and antagonistic effects caused by changes in the fishing effort and in climate characterize a specific functional group’s response in biomass which, in turn, modulate also the catch and income of the other fleets, and especially of those sharing target resources. However, trawler’s intra-fleet competition is higher than the others fleet effects. In the medium term, the effects of fishing effort reduction are higher than those of climate change and seem to make exploitation of marine resources more sustainable over time and fishery processes more efficient by improving ecosystem health.

Este artículo contiene 14 páginas, 7 figuras, 3 tablas., Although considerable research progress on the effects of anthropogenic disturbance in the deep sea has been made in recent years, our understanding of these impacts at community level remains limited. Here, we studied deep-sea assemblages of Sicily (Mediterranean Sea) subject to different intensities of benthic trawling using environmental DNA (eDNA) metabarcoding and taxonomic identification of meiofauna communities. Firstly, eDNA metabarcoding data did not detect trawling impacts using alpha diversity whereas meiofauna data detected a significant effect of trawling. Secondly, both eDNA and meiofauna data detected significantly different communities across distinct levels of trawling intensity when we examined beta diversity. Taxonomic assignment of the eDNA data revealed that Bryozoa was present only at untrawled sites, highlighting their vulnerability to trawling. Our results provide evidence for community-wide impacts of trawling, with different trawling intensities leading to distinct deep-sea communities. Finally, we highlight the need for further studies to unravel understudied deep-sea biodiversity., project funded by the European Community (Grant agreement n◦ 312762). L.E.H. was supported by the Natural Environmental Research Council (grant number NE/L002531/). C.L.I. was supported by the H2020 MSC Action HABISS (GA 890815). We are grateful to the staff at the Environmental Sequencing facility at the National Oceanography Centre Southampton and to members of the EU-FP7 ISLAND (Exploring SiciLian CAnyoN Dynamics) Cruise. Finally, this work acknowledges the ‘Severo Ochoa Centre of Excellence’ accreditation (CEX2019-000928-S) to ICM-CSIC.

Ecological systems can be regarded as natural capital that yields ecosystem services vital for human well-being. The provision of these services strictly depends on the protection of natural capital stocks generating them, highlighting the need for conservation and monitoring actions led by proper assessment methodologies. Among the available methods, the Environmental Accounting Model based on the emergy approach is rapidly gaining popularity in ecological applications. We used such method to assess the natural capital value of Posidonia oceanica meadows, widely recognized the most important ecosystems in the Mediterranean basin, at Italian national spatial scale. The natural capital value of P. oceanica was further weighed by the estimates provided by a Habitat Suitability Model. We observed that the estimated level of habitat suitability played an important role as modifier of the average biophysical value of P. oceanica. Our approach allowed to identify the meadows having the highest stability and over space and time, which we defined as the most valuable in biophysical terms, thus with highest natural capital value. The spatially explicit estimates we provided could support managers and policy-makers to ensure the long-term provision of ecosystem services generated by P. oceanica, enhancing ecosystem management and maritime spatial planning.

Single-walled carbon nanotubes (SWCNTs) are among the most exploited carbon allotropes in nanosensing, bioengineering, and photobiological applications, however, the interactions of nanotubes with the photosynthetic process and structures are still poorly understood. We found that SWCNTs are not toxic to the photosynthetic apparatus of the model unicellular alga Chlamydomonas reinhardtii and demonstrate that this carbon nanomaterial can protect algal photosynthesis against photoinhibition. The results show that the inherent phytotoxicity of the nanotubes may be overcome by an intentional selection of nanomaterial characteristics. A low concentration (2 μg mL

Bioerosion is the destruction of hard substrates resulting from biological activity, and plays a relevant role in the ecological interactions and coastal dynamics processes. Several organisms have evolved structures and behaviors allowing them to perforate biotic and abiotic surfaces, transforming hard surfaces into particles, and contributing significantly to sediment production in the coastal and marine environment. Due to the large geographical diffusion of marine borers, bioerosion is relevant in many scientific and applied fields of interest. Most bioerosion studies have hitherto been conducted in tropical areas, where borers are a critical component of coral reef destruction. Comparatively, little information is available for the bioerosion of submerged archeological heritage. This review focuses on the bioerosion of archeological calcareous artifacts in the Mediterranean Sea, summarizing studies concerning the colonization of statues, shipwrecks, cargo, and the remains of submerged cities. The paper includes the first comprehensive listing of the archeological sites in the Mediterranean Sea where bioerosion has been assessed. The diversity of boring organisms affecting marine archeological remains and their boring patterns, the various types of bored materials, and the severity of the damage caused to heritage artifacts are also included. Both microborers (algae, fungi, and cyanobacteria) and macroborers (sponges, bivalves, polychaetes, sipunculids, and echinoids) are considered, and their roles in the structuring of endolithic assemblages are also covered. The experimental techniques currently employed to analyze bioerosion traces, helping to identify particular species and ichnospecies and their ecological dynamics, are also considered. Finally, a discussion of the current strategies proposed for the in situ protection and conservation of Underwater Cultural Heritage is provided.

Vitamin D is an essential fat soluble micronutrient that helps in growth, bone development, calcium homeostasis and other metabolic process. The study on effect of vitamin D3 in marine fish larvae were very scarce irrespective of species. The present study determines the impacts of dietary vitamin D3 on growth performance, calcium absorption, mineralization, and skeletal anomalies during the development of gilthead seabream (Sparus aurata) larvae was assessed until 47 days post hatching. Diets containing four levels of vitamin D3 (0, 25, 30, 384 μg kg−1 or 11.6, 1000, 1200, 15,360 IU kg−1) were formulated to determine the effect of vitamin D3 at deficient, excess, and optimum levels. The gilthead seabream larvae in the present study fed with this wide range of vitamin D3 presented a constant growth with all the diets but presented signs of toxicity in excess level, affecting the survival, calcium uptake, and bone biomarker mechanism in larvae, which resulted in increased skeletal anomalies and mortality. An increase of dietary vitamin D3 up to 384 μg kg−1 significantly raised the whole body vitamin D3 content, calcium, and phosphorus intake and increased the incidence of skeletal anomalies, particularly cranial anomalies. The appearance of skeletal anomalies in larvae fed 384 μg kg−1 vitamin D3 was in association with the upregulation of bmp2, alp, and oc gene expression. However, larvae fed 0, 25, 30 μg kg−1 vitamin D3 showed higher survival than the group fed 384 μg kg−1 vitamin D3. Meanwhile vitamin D3 deficient diet 0 μg kg−1 presented with lower mineralization rate and increase incidence of maxillary anomaly. Thus, the current study revealed the evidence of vitamin D3 deficiency as well as toxicity in gilthead seabream larvae during the developmental process and conclude that the recommended dietary vitamin D3 level for gilthead seabream larvae may range between 25 and 30 μg kg−1 which improves larval survival, calcium and phosphate level and vertebral mineralization with reduced incidence of skeletal anomalies in gilthead seabream larvae

This study investigated for the first time the effects of ZnO nanoparticle (NP) chronic exposure (28 days) on Tigriopus fulvus. Acute toxicity (48 h) of three Zn chemical forms was assessed as well including the following: (a) ZnO nanoparticles (NPs), (b) Zn2+ from ZnO NP suspension after centrifugation (supernatant) and (c) ZnSO4 H2O. Physical-chemical and electronic microscopies were used to characterize spiked exposure media. Results showed that the dissolution of ZnO NPs was significant, with a complete dissolution at lowest test concentrations, but nano- and micro-aggregates were always present. Acute test evidenced a significant higher toxicity of Zn2+ and ZnSO4 compared to ZnO NPs. The chronic exposure to ZnO NPs caused negative effects on the reproductive traits, i.e. brood duration, brood size and brood number at much lower concentrations (≥ 100 μg/L). The appearance of ovigerous females was delayed at higher concentrations of ZnO NPs, while the time required for offspring release and the percentage of non-viable eggs per female were significantly increased. ZnO NP subchronic exposure evidenced its ability to reduce T. fulvus individual reproductive fitness, suggesting that ZnO NPs use and release must be carefully monitored. [Figure not available: see fulltext.]