73 results on '"Shadi Qasem"'
Search Results
2. Sarcina organism of the stomach: Report of a case
- Author
-
Andre Ene, Morgan H. McCoy, and Shadi Qasem
- Subjects
Sarcina Ventriculi ,Stomach ,Ulcer ,Gram positive ,Pathology ,RB1-214 - Abstract
Sarcina Ventriculi is a gram-positive organism, rarely encountered as a human pathogen. It has been described in stomach specimens, often in patients with delayed gastric emptying. The exact role of this organism in human disease is not clear. In this case report, we describe a case of Sarcina organism associated with gastric ulceration. This organism is likely underreported and often overlooked, as it may not be obvious on routine staining. Awareness of this organism and further studies are needed to understand its role in human disease.
- Published
- 2021
- Full Text
- View/download PDF
3. Multi-Omics Analysis of Brain Metastasis Outcomes Following Craniotomy
- Author
-
Jing Su, Qianqian Song, Shadi Qasem, Stacey O’Neill, Jingyun Lee, Cristina M. Furdui, Boris Pasche, Linda Metheny-Barlow, Adrianna H. Masters, Hui-Wen Lo, Fei Xing, Kounosuke Watabe, Lance D. Miller, Stephen B. Tatter, Adrian W. Laxton, Christopher T. Whitlow, Michael D. Chan, Michael H. Soike, and Jimmy Ruiz
- Subjects
bioinformatics analysis ,brain metastases ,craniotomy ,distant brain failure ,RNA-Seq - RNA sequencing ,proteomics ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
BackgroundThe incidence of brain metastasis continues to increase as therapeutic strategies have improved for a number of solid tumors. The presence of brain metastasis is associated with worse prognosis but it is unclear if distinctive biomarkers can separate patients at risk for CNS related death.MethodsWe executed a single institution retrospective collection of brain metastasis from patients who were diagnosed with lung, breast, and other primary tumors. The brain metastatic samples were sent for RNA sequencing, proteomic and metabolomic analysis of brain metastasis. The primary outcome was distant brain failure after definitive therapies that included craniotomy resection and radiation to surgical bed. Novel prognostic subtypes were discovered using transcriptomic data and sparse non-negative matrix factorization.ResultsWe discovered two molecular subtypes showing statistically significant differential prognosis irrespective of tumor subtype. The median survival time of the good and the poor prognostic subtypes were 7.89 and 42.27 months, respectively. Further integrated characterization and analysis of these two distinctive prognostic subtypes using transcriptomic, proteomic, and metabolomic molecular profiles of patients identified key pathways and metabolites. The analysis suggested that immune microenvironment landscape as well as proliferation and migration signaling pathways may be responsible to the observed survival difference.ConclusionA multi-omics approach to characterization of brain metastasis provides an opportunity to identify clinically impactful biomarkers and associated prognostic subtypes and generate provocative integrative understanding of disease.
- Published
- 2021
- Full Text
- View/download PDF
4. Selection of a Novel Aptamer Against Vitronectin Using Capillary Electrophoresis and Next Generation Sequencing
- Author
-
Christopher H Stuart, Kathryn R Riley, Olcay Boyacioglu, Denise M Herpai, Waldemar Debinski, Shadi Qasem, Frank C Marini, Christa L. Colyer, and William H Gmeiner
- Subjects
aptamer ,breast cancer ,SELEX ,vitronectin ,Therapeutics. Pharmacology ,RM1-950 - Abstract
Breast cancer (BC) results in ≃40,000 deaths each year in the United States and even among survivors treatment of the disease may have devastating consequences, including increased risk for heart disease and cognitive impairment resulting from the toxic effects of chemotherapy. Aptamer-mediated drug delivery can contribute to improved treatment outcomes through the selective delivery of chemotherapy to BC cells, provided suitable cancer-specific antigens can be identified. We report here the use of capillary electrophoresis in conjunction with next generation sequencing to develop the first vitronectin (VN) binding aptamer (VBA-01; Kd 405 nmol/l, the first aptamer to vitronectin (VN; Kd = 405 nmol/l), a protein that plays an important role in wound healing and that is present at elevated levels in BC tissue and in the blood of BC patients relative to the corresponding nonmalignant tissues. We used VBA-01 to develop DVBA-01, a dimeric aptamer complex, and conjugated doxorubicin (Dox) to DVBA-01 (7:1 ratio) using pH-sensitive, covalent linkages. Dox conjugation enhanced the thermal stability of the complex (60.2 versus 46.5°C) and did not decrease affinity for the VN target. The resulting DVBA-01-Dox complex displayed increased cytotoxicity to MDA-MB-231 BC cells that were cultured on plasticware coated with VN (1.8 × 10−6mol/l) relative to uncoated plates (2.4 × 10−6 mol/l), or plates coated with the related protein fibronectin (2.1 × 10−6 mol/l). The VBA-01 aptamer was evaluated for binding to human BC tissue using immunohistochemistry and displayed tissue specific binding and apparent association with BC cells. In contrast, a monoclonal antibody that preferentially binds to multimeric VN primarily stained extracellular matrix and vessel walls of BC tissue. Our results indicate a strong potential for using VN-targeting aptamers to improve drug delivery to treat BC.
- Published
- 2016
- Full Text
- View/download PDF
5. Tenosynovial giant cell tumor presenting as a parotid gland mass: Expanding the differential diagnosis of giant cell-rich lesions in salivary glands
- Author
-
Ling Guo, Shadi Qasem, Simon Bergman, and Ziyan T Salih
- Subjects
Fine needle aspiration ,giant cell tumor of tendon sheath ,parotid gland ,temporomandibular joint ,tenosynovial giant cell tumor ,Cytology ,QH573-671 - Abstract
Tenosynovial giant cell tumors (TGCT) are rare benign soft tissue tumors affecting mostly young adults. The most common affected sites include the knee, ankle, elbow, shoulder, and fingers. The temporomandibular joint is occasionally affected. Herein, we report a case of a 31-year-old Caucasian male who presented clinically with a parotid gland mass. The initial clinical and radiological work-up failed to reveal any involvement of the adjacent temporomandibular joint. Fine-needle aspiration revealed a cellular tumor composed of mononuclear and multinucleated giant cells with fibrosis and hemosiderin deposition. This was subsequently found to be a TGCT arising from the temporomandibular joint. Giant cell-rich lesions are uncommon in salivary glands. Herein, we describe the cytomorphology and clinico-radiographic features of this tumor with emphasis on the differential diagnosis of giant cell-rich lesions presenting in salivary glands. Despite its rare occurrence, this entity should be considered when giant cells are prominent in specimens acquired from this location.
- Published
- 2014
- Full Text
- View/download PDF
6. Collagen deposition within brain metastases is associated with leptomeningeal failure after cavity-directed radiosurgery
- Author
-
Mohammed Abdulhaleem, Jimmy Ruiz, Stacey O’Neill, Ryan T Hughes, Shadi Qasem, Roy E Strowd, Cristina Furdui, Konousuke Watabe, Lance D Miller, Waldemar Debinski, Stephen Tatter, Linda Metheny-Barlow, Jaclyn J White, Jingyun Lee, Emory R McTyre, Adrian Laxton, Michael D Chan, Jing Su, and Michael H Soike
- Subjects
Oncology ,Surgery ,Neurology (clinical) - Abstract
Background Leptomeningeal failure (LMF) represents a devastating progression of disease following resection of brain metastases (BrM). We sought to identify a biomarker at time of BrM resection that predicts for LMF using mass spectrometry-based proteomic analysis of resected BrM and to translate this finding with histochemical assays. Methods We retrospectively reviewed 39 patients with proteomic data available from resected BrM. We performed an unsupervised analysis with false discovery rate adjustment (FDR) to compare proteomic signature of BrM from patients that developed LMF versus those that did not. Based on proteomic analysis, we applied trichrome stain to a total of 55 patients who specifically underwent resection and adjuvant radiosurgery. We used competing risks regression to assess predictors of LMF. Results Of 39 patients with proteomic data, FDR revealed type I collagen-alpha-1 (COL1A1, P = .045) was associated with LMF. The degree of trichrome stain in each block correlated with COL1A1 expression (β = 1.849, P = .001). In a cohort of 55 patients, a higher degree of trichrome staining was associated with an increased hazard of LMF in resected BrM (Hazard Ratio 1.58, 95% CI 1.11–2.26, P = .01). Conclusion The degree of trichrome staining correlated with COL1A1 and portended a higher risk of LMF in patients with resected brain metastases treated with adjuvant radiosurgery. Collagen deposition and degree of fibrosis may be able to serve as a biomarker for LMF.
- Published
- 2023
- Full Text
- View/download PDF
7. Rare, Atypical Mycobacterium Infection of the Hand in Immunocompetent Individuals
- Author
-
Jersey Burns, Linda Chao, Johnathon R. McCormick, Elizabeth Palavecino, Zhongyu Li, and Shadi Qasem
- Subjects
General Medicine - Published
- 2023
- Full Text
- View/download PDF
8. Xantho-granulomatous mastitis preceded by cysts on ultrasound: Two cases with review of literature
- Author
-
Wendi Owen, Yuxi Zhang, Shadi Qasem, Margaret M. Szabunio, and Harit Kapoor
- Subjects
medicine.medical_specialty ,Breast Neoplasms ,Mastitis ,Granulomatous mastitis ,030218 nuclear medicine & medical imaging ,Diagnosis, Differential ,03 medical and health sciences ,0302 clinical medicine ,Breast cancer ,Humans ,Medicine ,Radiology, Nuclear Medicine and imaging ,Granulomatous Mastitis ,Stage (cooking) ,Ultrasonography ,Cysts ,business.industry ,Rare entity ,medicine.disease ,Dermatology ,Natural history ,Management implications ,030220 oncology & carcinogenesis ,Cyst formation ,Female ,business - Abstract
Xantho-granulomatous mastitis (XGM) is a rare entity, only recently described in 2005. These lesions are often biopsied due to their clinical and radiological resemblance to breast cancer. With limited clinical experience, the etiopathogenesis and natural history of XGM remains unknown. We present two cases of pathologically proven XGM that were imaged at two time-points, with the findings alluding to the possibility of a precursor stage of cyst formation. In addition, we present a thorough review of all cases published to date and discuss the differential considerations and management implications of XGM.
- Published
- 2021
- Full Text
- View/download PDF
9. Pharmacological Intervention in Children with Autism Spectrum Disorder with Standard Supportive Therapies Significantly Improves Core Signs and Symptoms: A Single-Center, Retrospective Case Series
- Author
-
Emily de los Reyes, Haitham Talo, Hamza A Alsayouf, Marisa L. Biddappa, Shadi Qasem, and Mohammad Qasaymeh
- Subjects
Pediatrics ,medicine.medical_specialty ,Neuropsychiatric Disease and Treatment ,medicine.medical_treatment ,03 medical and health sciences ,aripiprazole ,0302 clinical medicine ,Neurodevelopmental disorder ,Intervention (counseling) ,mental disorders ,medicine ,Case Series ,comorbid challenging behaviors ,Antipsychotic ,risperidone ,Risperidone ,business.industry ,medicine.disease ,antipsychotic ,030227 psychiatry ,Autism spectrum disorder ,Childhood Autism Rating Scale ,Clinical Global Impression ,Aripiprazole ,business ,030217 neurology & neurosurgery ,medicine.drug - Abstract
Hamza A Alsayouf,1 Haitham Talo,1 Marisa L Biddappa,1 Mohammad Qasaymeh,2 Shadi Qasem,3 Emily De Los Reyes4 1Kids Neuro Clinic and Rehab Center, Dubai, United Arab Emirates; 2Pediatric Neurology, Dent Neurological Institute, Amherst, NY, USA; 3Pathology and Laboratory Medicine, University of Kentucky College of Medicine, Lexington, KY, USA; 4Pediatric Neurology, Nationwide Children’s Hospital and Ohio State University, Columbus, OH, USACorrespondence: Hamza A AlsayoufKids Neuro Clinic and Rehab Center, Dubai Healthcare City, Dubai, United Arab EmiratesTel +97 145570326Email leeamra1000@gmail.comPurpose: Autism spectrum disorder (ASD) is a debilitating neurodevelopmental disorder with high heterogeneity and no clear common cause. Several drugs, in particular risperidone and aripiprazole, are used to treat comorbid challenging behaviors in children with ASD. Treatment with risperidone and aripiprazole is currently recommended by the Food and Drug Administration (FDA) in the USA for children aged 5 and 6 years and older, respectively. Here, we investigated the use of these medications in younger patients aged 4 years and older.Patients and Methods: This retrospective case series included 18 children (mean age, 5.7 years) with ASD treated at the Kids Neuro Clinic and Rehab Center in Dubai. These patients began treatment with risperidone or aripiprazole at the age of 4 years and older, and all patients presented with comorbid challenging behaviors that warranted pharmacological intervention with either risperidone or aripiprazole.Results: All 18 children showed objective improvement in their ASD core signs and symptoms. Significant improvement was observed in 44% of the cases, and complete resolution (minimal-to-no-symptoms) was observed in 56% of the cases as per the Childhood Autism Rating Scale 2-Standard Test (CARS2-ST) and the Clinical Global Impression (CGI) scales.Conclusion: Our findings indicate that the chronic administration of antipsychotic medications with or without ADHD medications is well tolerated and efficacious in the treatment of ASD core and comorbid symptoms in younger children when combined with standard supportive therapies. This is the first report to suggest a treatment approach that may completely resolve the core signs and symptoms of ASD. While the reported outcomes indicate significant improvement to complete resolution of ASD, pharmacological intervention should continue to be considered as part of a multi-component intervention in combination with standard supportive therapies. Furthermore, the findings support the critical need for double-blind, placebo-controlled studies to validate the outcomes.Keywords: risperidone, aripiprazole, antipsychotic, comorbid challenging behaviors
- Published
- 2020
- Full Text
- View/download PDF
10. Prognostic Molecular Classification of Appendiceal Mucinous Neoplasms Treated with Cytoreductive Surgery and Hyperthermic Intraperitoneal Chemotherapy
- Author
-
Konstantinos I. Votanopoulos, Jing Su, Perry Shen, Stacey S O'Neill, Jeff W. Chou, Edward A. Levine, Guangxu Jin, Lou Craddock, Lance D. Miller, Shadi Qasem, and Kathleen C. Perry
- Subjects
Adult ,Male ,endocrine system ,Population ,Hyperthermic Intraperitoneal Chemotherapy ,Disease ,Article ,Immune System Phenomena ,03 medical and health sciences ,0302 clinical medicine ,Immune system ,Surgical oncology ,Gene expression ,Humans ,Medicine ,education ,Gene ,Peritoneal Neoplasms ,Aged ,Proportional Hazards Models ,education.field_of_study ,business.industry ,Gene Expression Profiling ,Margins of Excision ,Cancer ,Cytoreduction Surgical Procedures ,Oncogenes ,Middle Aged ,Prognosis ,medicine.disease ,Adenocarcinoma, Mucinous ,Progression-Free Survival ,Survival Rate ,Appendiceal Neoplasms ,Oncology ,030220 oncology & carcinogenesis ,Cancer research ,Female ,030211 gastroenterology & hepatology ,Surgery ,Hyperthermic intraperitoneal chemotherapy ,Neoplasm Grading ,Transcriptome ,business - Abstract
BACKGROUND. Appendiceal mucinous neoplasm (AMN) with peritoneal metastasis is a rare but deadly disease with few prognostic or therapy-predictive biomarkers to guide treatment decisions. Here, we investigated the prognostic and biological attributes of gene expression-based AMN molecular subtypes. METHODS. AMN specimens (n = 138) derived from a population-based subseries of patients treated at our institution with cytoreductive surgery and hyperthermic intraperitoneal chemotherapy (CRS/HIPEC) between 05/2000 and 05/2013 were analyzed for gene expression using a custom-designed NanoString 148-gene panel. Signed non-negative matrix factorization (sNMF) was used to define a gene signature capable of delineating robustly-classified AMN molecular subtypes. The sNMF class assignments were evaluated by topology learning, reverse-graph embedding and cross-cohort performance analysis. RESULTS. Three molecular subtypes of AMN were discerned by the expression patterns of 17 genes with roles in cancer progression or anti-tumor immunity. Tumor subtype assignments were confirmed by topology learning. AMN subtypes were termed immune-enriched (IE), oncogeneenriched (OE) and mixed (M) as evidenced by their gene expression patterns, and exhibited significantly different post-treatment survival outcomes. Genes with specialized immune functions, including markers of T-cells, natural killer cells, B-cells, and cytolytic activity showed increased expression in the low-risk IE subtype, while genes implicated in the promotion of cancer growth and progression were more highly expressed in the high-risk OE subtype. In multivariate analysis, the subtypes demonstrated independent prediction power for post-treatment survival. CONCLUSIONS. Our findings suggest a greater role for the immune system in AMN than previously recognized. AMN subtypes may have clinical utility for predicting CRS/ HIPEC treatment outcomes.
- Published
- 2020
- Full Text
- View/download PDF
11. Sarcina organism of the stomach: Report of a case
- Author
-
Shadi Qasem, Morgan H. McCoy, and Andre Ene
- Subjects
Sarcina ,Gastric emptying ,biology ,business.industry ,Stomach ,Gram positive ,Human pathogen ,biology.organism_classification ,Pathology and Forensic Medicine ,Staining ,Microbiology ,medicine.anatomical_structure ,Pathology ,Medicine ,RB1-214 ,In patient ,Sarcina ventriculi ,Sarcina Ventriculi ,business ,Organism ,Ulcer - Abstract
Sarcina Ventriculi is a gram-positive organism, rarely encountered as a human pathogen. It has been described in stomach specimens, often in patients with delayed gastric emptying. The exact role of this organism in human disease is not clear. In this case report, we describe a case of Sarcina organism associated with gastric ulceration. This organism is likely underreported and often overlooked, as it may not be obvious on routine staining. Awareness of this organism and further studies are needed to understand its role in human disease.
- Published
- 2021
12. Development of a Single-Cell Technique to Increase Yield and Use of Gastrointestinal Cancer Organoids for Personalized Medicine Application
- Author
-
Miranda Lin, Joseph Kim, Michael J. Cavnar, Samuel H. Mardini, Prakash K. Pandalai, Shadi Qasem, Moamen Gabr, Reema A. Patel, Megan M. Harper, and Mei Gao
- Subjects
Drug ,Pancreatic ductal adenocarcinoma ,Time Factors ,Cell Survival ,media_common.quotation_subject ,Biopsy ,Cell ,Primary Cell Culture ,H&E stain ,Antineoplastic Agents ,03 medical and health sciences ,0302 clinical medicine ,Organoid ,Medicine ,Humans ,Gastrointestinal cancer ,Precision Medicine ,media_common ,Gastrointestinal Neoplasms ,business.industry ,Reproducibility of Results ,medicine.disease ,Organoids ,medicine.anatomical_structure ,Drug Resistance, Neoplasm ,030220 oncology & carcinogenesis ,Cancer research ,Immunohistochemistry ,030211 gastroenterology & hepatology ,Surgery ,Personalized medicine ,Drug Screening Assays, Antitumor ,Single-Cell Analysis ,business - Abstract
Background Organoids are excellent 3-dimensional in vitro models of gastrointestinal cancers. However, patient-derived organoids (PDOs) remain inconsistent and unreliable for rapid actionable drug sensitivity testing due to size variation and limited material. Study design On day10/passage 2 after standard creation of organoids, half of PDOs were dissociated into single-cells with TrypLE Express Enzyme/DNase I and mechanical dissociation; and half of PDOs were expanded by the standard technique. Hematoxylin and eosin and immunohistochemistry with CK7 and CK20 were performed for characterization. Drug sensitivity testing was completed for single-cells and paired standard PDOs to assess reproducibility. Results After 2 to 3 days, >50% of single-cells reformed uniform miniature PDOs (∼50 μm). We developed 10 PDO single-cell lines (n = 4, gastric cancer, [GC]; and n = 6, pancreatic ductal adenocarcinoma, [PDAC]), which formed epithelialized cystic structures and by IHC, exhibited CK7(high)/CK20(low) expression patterns mirroring parent tissues. Compared with paired standard PDOs, single-cells (n = 2, PDAC; = 2, GC) showed similar architecture, albeit smaller and more uniform. Importantly, single cells demonstrated similar sensitivity to cytotoxic drugs to matched PDOs. Conclusions PDO single-cells are accurate for rapid clinical drug testing in gastrointestinal cancers. Using early passage PDO single-cells facilitates high-volume drug testing, decreasing time from tumor sampling to actionable clinical decisions, and provides a personalized medicine platform to optimally select drugs for gastrointestinal cancer patients.
- Published
- 2020
13. Differentiating Intrarenal Ectopic Adrenal Tissue From Renal Cell Carcinoma in the Kidney
- Author
-
Barry DeYoung, Shadi Qasem, Ziyan T. Salih, and Mustafa Yousif
- Subjects
Adult ,Male ,0301 basic medicine ,Pathology ,medicine.medical_specialty ,Adolescent ,Choristoma ,PAX2 ,Autopsy ,urologic and male genital diseases ,Pathology and Forensic Medicine ,Diagnosis, Differential ,Young Adult ,03 medical and health sciences ,0302 clinical medicine ,Renal cell carcinoma ,Adrenal Glands ,Biomarkers, Tumor ,medicine ,Humans ,Carcinoma, Renal Cell ,Aged ,Kidney ,business.industry ,Middle Aged ,medicine.disease ,Immunohistochemistry ,Kidney Neoplasms ,female genital diseases and pregnancy complications ,030104 developmental biology ,medicine.anatomical_structure ,030220 oncology & carcinogenesis ,Female ,Kidney Diseases ,Surgery ,Anatomy ,Differential diagnosis ,business ,PAX8 - Abstract
Background. Adrenal rest (AR) is the presence of ectopic adrenal cortical tissue, often identified incidentally during autopsy (20% of postmortem examination). In the kidney, AR can be found in 6% of the general population. Ectopic adrenal tissue is of no functional significance but may in some cases, pose a diagnostic challenge for the pathologist, especially in the context of renal clear cell renal cell carcinoma (RCC) and small needle biopsies. Aim. To investigate the utility of immunohistochemical stains in distinguishing AR from RCC. Methods. Archival cases of AR, in our institution, were reviewed and compared with a cohort of RCC cases using a panel of immunohistochemical stains, including PAX2, PAX8, calretinin, and inhibin. Results. Nine of 10 (90%) cases of AR showed positive staining for inhibin and negative staining for calretinin, PAX2 and PAX8. One AR case was positive for PAX2 and PAX8 in addition to inhibin. All (100%) RCC cases were positive for PAX2 and PAX8, but negative for inhibin and calretinin. Conclusions. A panel of PAX2, PAX8 and inhibin may be useful markers for distinguishing AR from RCC. Calretinin was noncontributory in our study.
- Published
- 2018
- Full Text
- View/download PDF
14. Combined and Alternating Topical Steroids and Food Elimination Diet for the Treatment of Eosinophilic Esophagitis
- Author
-
M. Angie Almond, Shadi Qasem, Anca Safta, Elizabeth T. Jensen, Craig C. Reed, and Evan S. Dellon
- Subjects
Male ,0301 basic medicine ,Budesonide ,medicine.medical_specialty ,Time Factors ,Physiology ,Administration, Topical ,Administration, Oral ,Gastroenterology ,Medication Adherence ,Leukocyte Count ,03 medical and health sciences ,0302 clinical medicine ,Adrenal Cortex Hormones ,Internal medicine ,Elimination diet ,medicine ,Humans ,Child ,Prospective cohort study ,Eosinophilic esophagitis ,Retrospective Studies ,Fluticasone ,business.industry ,Retrospective cohort study ,Eosinophilic Esophagitis ,Eosinophil ,medicine.disease ,Combined Modality Therapy ,Dysphagia ,Eosinophils ,Treatment Outcome ,030104 developmental biology ,medicine.anatomical_structure ,Child, Preschool ,Female ,030211 gastroenterology & hepatology ,Esophagoscopy ,medicine.symptom ,Deglutition Disorders ,business ,medicine.drug - Abstract
Few studies have examined combined or alternating treatment algorithms in eosinophilic esophagitis. We conducted a retrospective cohort study to ascertain the efficacy and adherence to a combined and alternating treatment approach with topical corticosteroids and 2-food elimination diet for pediatric EoE. Patients were prescribed a 2-food elimination diet (milk and soy) and topical corticosteroid (fluticasone or oral viscous budesonide) for 3 months, after which the steroid was discontinued and 2-food elimination diet continued for 3 months. An EGD was performed at baseline, 3 and 6 months. Clinical, endoscopic, and histologic data were extracted from electronic medical records. Nonparametric tests assessed adherence and outcomes. Twenty-nine eosinophilic esophagitis cases were included (mean age 11.5 years, 61% male). Complete adherence to combined therapy and 2-food elimination diet alone was 75 and 79%, respectively. Median eosinophil counts decreased from 51 to 2 eosinophils/hpf (p
- Published
- 2018
- Full Text
- View/download PDF
15. Pediatric patient with peritoneal mesothelioma harboring ALK rearrangement
- Author
-
Shadi Qasem, Charles S. Dietrich, John Hahn, Joseph Kim, Reema A. Patel, Prakash K. Pandalai, Sandra J Beck, Jill M. Kolesar, Susanne M. Arnold, Megan M. Harper, and Miranda Lin
- Subjects
Somatic cell ,Translocation ,Disease ,medicine.disease_cause ,Asbestos ,hemic and lymphatic diseases ,Medicine ,Anaplastic lymphoma kinase ,Mesothelioma ,neoplasms ,RC254-282 ,General Environmental Science ,Crizotinib ,business.industry ,General Engineering ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,respiratory system ,medicine.disease ,Personalized medicine ,ALK mutation ,respiratory tract diseases ,Peritoneal mesothelioma ,Cancer research ,General Earth and Planetary Sciences ,business ,Rare disease ,medicine.drug - Abstract
Malignant mesothelioma is a rare disease that typically occurs in older patients with prolonged exposure to asbestos. The majority of mesothelioma occurs in the pleura. Less frequently, patients will develop peritoneal mesothelioma without pleural involvement. Within this subset of patients, therapeutically targetable somatic mutations are being identified. Here we describe a 17-year old female with metastatic peritoneal mesothelioma without prior asbestos history. After disease progression on cytotoxic chemotherapy, the small molecule crizotinib, an Anaplastic Lymphoma Kinase (ALK) inhibitor, was administered based on detection of somatic STRN-ALK fusion mutation. Rapid symptomatic improvement and tumor response was followed by surgical eradication of disease. The patient remains disease-free over 12 months later. This case is an example of a rare subset of young females who may develop peritoneal mesothelioma, without pleural involvement, secondary to ALK translocations. This report demonstrates the growing knowledge of this rare subgroup and the need for further investigation into ALK translocation as a driver for peritoneal mesothelioma development, progression, and evaluation of ALK inhibitors in malignant mesothelioma.
- Published
- 2021
- Full Text
- View/download PDF
16. Repeat stereotactic radiosurgery as salvage therapy for locally recurrent brain metastases previously treated with radiosurgery
- Author
-
Jimmy Ruiz, Catherine Okoukoni, Michael T. Munley, Michael D. Chan, Kounosuke Watabe, Stephen B. Tatter, Hui-Wen Lo, Emory R. McTyre, Will H McKay, Fei Xing, Adrian W. Laxton, Shadi Qasem, and Natalie K. Alphonse-Sullivan
- Subjects
Adult ,medicine.medical_treatment ,Brain tumor ,Salvage therapy ,Radiosurgery ,Metastasis ,03 medical and health sciences ,0302 clinical medicine ,medicine ,Humans ,Radiation Injuries ,Radiation treatment planning ,Aged ,Retrospective Studies ,Aged, 80 and over ,Salvage Therapy ,Brain Neoplasms ,Proportional hazards model ,business.industry ,Radiotherapy Dosage ,General Medicine ,Middle Aged ,medicine.disease ,Radiation therapy ,Treatment Outcome ,030220 oncology & carcinogenesis ,Retreatment ,Neoplasm Recurrence, Local ,business ,Nuclear medicine ,030217 neurology & neurosurgery ,Brain metastasis - Abstract
OBJECTIVEThere are a variety of salvage options available for patients with brain metastases who experience local failure after stereotactic radiosurgery (SRS). These options include resection, whole-brain radiation therapy, laser thermoablation, and repeat SRS. There is little data on the safety and efficacy of repeat SRS following local failure of a prior radiosurgical procedure. This study evaluates the clinical outcomes and dosimetric characteristics of patients who experienced tumor recurrence and were subsequently treated with repeat SRS.METHODSBetween 2002 and 2015, 32 patients were treated with repeat SRS for local recurrence of ≥ 1 brain metastasis following initial SRS treatment. The Kaplan-Meier method was used to estimate time-to-event outcomes including overall survival (OS), local failure, and radiation necrosis. Cox proportional hazards analysis was performed for predictor variables of interest for each outcome. Composite dose-volume histograms were constructed for each reirradiated lesion, and these were then used to develop a predictive dosimetric model for radiation necrosis.RESULTSForty-six lesions in 32 patients were re-treated with a second course of SRS after local failure. A median dose of 20 Gy (range 14–22 Gy) was delivered to the tumor margin at the time of repeat SRS. Local control at 1 year was 79% (95% CI 67%–94%). Estimated 1-year OS was 70% (95% CI 55%–88%). Twelve patients had died at the most recent follow-up, with 8/12 patients experiencing neurological death (as described in Patchell et al.). Eleven of 46 (24%) lesions in 11 separate patients treated with repeat SRS were associated with symptomatic radiation necrosis. Freedom from radiation necrosis at 1 year was 71% (95% CI 57%–88%). Analysis of dosimetric data revealed that the volume of a lesion receiving 40 Gy (V40Gy) was the most predictive factor for the development of radiation necrosis (p = 0.003). The following V40Gy thresholds were associated with 10%, 20%, and 50% probabilities of radiation necrosis, respectively: 0.28 cm3 (95% CI 3%–28%), 0.76 cm3 (95% CI 9%–39%), 1.60 cm3 (95% CI 26%–74%).CONCLUSIONSRepeat SRS appears to be an effective salvage option for patients with brain metastases experiencing local failure following initial SRS treatment. This series demonstrates durable local control and, although rates of radiation necrosis are significant, repeat SRS may be indicated for select cases of local disease recurrence. Because the V40Gy is predictive of radiation necrosis, limiting this value during treatment planning may allow for a reduction in radiation necrosis rates.
- Published
- 2017
- Full Text
- View/download PDF
17. Circulating mutational portrait of cancer: manifestation of aggressive clonal events in both early and late stages
- Author
-
Stefan C. Grant, Bayard L. Powell, Edward Abraham, Matthew Pagni, Kristie L. Foley, Angela Tatiana Alistar, Shadi Qasem, Ville Kytölä, Michael Goodman, Edward A. Levine, Mac B. Robinson, Umit Topaloglu, Robin M. Petro, Barry DeYoung, Rhonda L. Bitting, Alexandra Thomas, Kexin Chen, Matti Nykter, Meng Yang, Wei Zhang, Rodwige J. Desnoyers, Mihaela Vatca, William Blackstock, Carol A. Albright, Mercedes Porosnicu, Ralph B. D'Agostino, Edgar D. Staren, W. Jeffrey Petty, and Boris Pasche
- Subjects
Male ,0301 basic medicine ,Cancer Research ,Mutation rate ,Lung Neoplasms ,medicine.disease_cause ,0302 clinical medicine ,Circulating tumor cell ,Neoplasms ,Non-invasive ,Aged, 80 and over ,Mutation ,Smoking ,Chemoradiotherapy ,DNA, Neoplasm ,Hematology ,lcsh:Diseases of the blood and blood-forming organs ,Middle Aged ,Neoplastic Cells, Circulating ,lcsh:Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,Neoplasm Proteins ,3. Good health ,ErbB Receptors ,Oncology ,030220 oncology & carcinogenesis ,Disease Progression ,Neoplastic Stem Cells ,Female ,KRAS ,Lung cancer ,Adult ,DNA repair ,Antineoplastic Agents ,Biology ,lcsh:RC254-282 ,Erlotinib Hydrochloride ,03 medical and health sciences ,medicine ,Humans ,Neoplasm Invasiveness ,Liquid biopsy ,Protein Kinase Inhibitors ,Molecular Biology ,Aged ,Retrospective Studies ,lcsh:RC633-647.5 ,Research ,Gene Expression Profiling ,Cancer ,Genes, erbB-1 ,Sequence Analysis, DNA ,Genes, p53 ,medicine.disease ,Clone Cells ,Genes, ras ,030104 developmental biology ,Immunology ,Cancer research ,Genes, Neoplasm ,Clonality - Abstract
Background Solid tumors residing in tissues and organs leave footprints in circulation through circulating tumor cells (CTCs) and circulating tumor DNAs (ctDNA). Characterization of the ctDNA portraits and comparison with tumor DNA mutational portraits may reveal clinically actionable information on solid tumors that is traditionally achieved through more invasive approaches. Methods We isolated ctDNAs from plasma of patients of 103 lung cancer and 74 other solid tumors of different tissue origins. Deep sequencing using the Guardant360 test was performed to identify mutations in 73 clinically actionable genes, and the results were associated with clinical characteristics of the patient. The mutation profiles of 37 lung cancer cases with paired ctDNA and tumor genomic DNA sequencing were used to evaluate clonal representation of tumor in circulation. Five lung cancer cases with longitudinal ctDNA sampling were monitored for cancer progression or response to treatments. Results Mutations in TP53, EGFR, and KRAS genes are most prevalent in our cohort. Mutation rates of ctDNA are similar in early (I and II) and late stage (III and IV) cancers. Mutation in DNA repair genes BRCA1, BRCA2, and ATM are found in 18.1% (32/177) of cases. Patients with higher mutation rates had significantly higher mortality rates. Lung cancer of never smokers exhibited significantly higher ctDNA mutation rates as well as higher EGFR and ERBB2 mutations than ever smokers. Comparative analysis of ctDNA and tumor DNA mutation data from the same patients showed that key driver mutations could be detected in plasma even when they were present at a minor clonal population in the tumor. Mutations of key genes found in the tumor tissue could remain in circulation even after frontline radiotherapy and chemotherapy suggesting these mutations represented resistance mechanisms. Longitudinal sampling of five lung cancer cases showed distinct changes in ctDNA mutation portraits that are consistent with cancer progression or response to EGFR drug treatment. Conclusions This study demonstrates that ctDNA mutation rates in the key tumor-associated genes are clinical parameters relevant to smoking status and mortality. Mutations in ctDNA may serve as an early detection tool for cancer. This study quantitatively confirms the hypothesis that ctDNAs in circulation is the result of dissemination of aggressive tumor clones and survival of resistant clones. This study supports the use of ctDNA profiling as a less-invasive approach to monitor cancer progression and selection of appropriate drugs during cancer evolution. Electronic supplementary material The online version of this article (doi:10.1186/s13045-017-0468-1) contains supplementary material, which is available to authorized users.
- Published
- 2017
- Full Text
- View/download PDF
18. CD138 plasma cells may predict brain metastasis recurrence following resection and stereotactic radiosurgery
- Author
-
Kounosuke Watabe, Michael D. Chan, Hui-Wen Lo, Pierre L. Triozzi, Jimmy Ruiz, Lance D. Miller, Jennifer M. Logue, Tamjeed Ahmed, Stacey S O'Neill, Emory R. McTyre, Boris Pasche, Jing Su, Waldemar Debinski, Shadi Qasem, Michael H. Soike, Maurizio Bendandi, and Ryan T. Hughes
- Subjects
Adult ,Male ,Pathology ,medicine.medical_specialty ,medicine.medical_treatment ,T cell ,Plasma Cells ,lcsh:Medicine ,Radiosurgery ,Stain ,Article ,Metastasis ,03 medical and health sciences ,0302 clinical medicine ,Text mining ,Recurrence ,medicine ,Humans ,lcsh:Science ,Craniotomy ,Cancer ,030304 developmental biology ,0303 health sciences ,Multidisciplinary ,Brain Neoplasms ,business.industry ,lcsh:R ,Middle Aged ,medicine.disease ,3. Good health ,medicine.anatomical_structure ,030220 oncology & carcinogenesis ,Immunohistochemistry ,lcsh:Q ,Female ,Syndecan-1 ,business ,Adjuvant ,Brain metastasis - Abstract
We sought to identify candidate biomarkers for early brain metastasis (BM) recurrence in patients who underwent craniotomy followed by adjuvant stereotactic radiosurgery. RNA sequencing was performed on eight resected brain metastasis tissue samples and revealed B-cell related genes to be highly expressed in patients who did not experience a distant brain failure and had prolonged overall survival. To translate the findings from RNA sequencing data, we performed immunohistochemistry to stain for B and T cell markers from formalin-fixed parffin-embedded tissue blocks on 13 patients. CD138 expressing plasma cells were identified and quantitatively assessed for each tumor sample. Patients’ tumor tissues that expressed high levels of CD138 plasma cells (N = 4) had a statistically significant improvement in OS compared to low levels of CD138 (N = 9) (p = 0.01). Although these findings are preliminary, the significance of CD138 expressing plasma cells within BM specimens should be investigated in a larger cohort. Immunologic markers based on resection cavity analysis could be predictive for determining patient outcomes following cavity-directed SRS.
- Published
- 2019
- Full Text
- View/download PDF
19. In Situ Bioprinting of Autologous Skin Cells Accelerates Wound Healing of Extensive Excisional Full-Thickness Wounds
- Author
-
Julie Marco, John D. Jackson, Jaehyun Kim, James H. Holmes, Shadi Qasem, Kyle W. Binder, Anthony Atala, Idris B. El-Amin, Tao Xu, James J. Yoo, Josh Tan, Sean V. Murphy, Dennis Dice, Aleksander Skardal, Jason Green, Mohammed Albanna, and Weixin Zhao
- Subjects
Keratinocytes ,0301 basic medicine ,Pathology ,medicine.medical_specialty ,Swine ,Mice, Nude ,lcsh:Medicine ,Proof of Concept Study ,Article ,Mice ,03 medical and health sciences ,0302 clinical medicine ,Re-Epithelialization ,Animals ,Humans ,Medicine ,lcsh:Science ,Wound treatment ,Cell Proliferation ,Skin ,Skin, Artificial ,Wound Healing ,Multidisciplinary ,Tissue Engineering ,integumentary system ,business.industry ,lcsh:R ,Bioprinting ,Hydrogels ,Equipment Design ,Fibroblasts ,Surgical procedures ,Alternative treatment ,030104 developmental biology ,Epidermal Cells ,Hypertrophic scarring ,Skin structure ,Female ,lcsh:Q ,Full thickness ,Wound closure ,Collagen ,business ,Wound healing ,030217 neurology & neurosurgery - Abstract
The early treatment and rapid closure of acute or chronic wounds is essential for normal healing and prevention of hypertrophic scarring. The use of split thickness autografts is often limited by the availability of a suitable area of healthy donor skin to harvest. Cellular and non-cellular biological skin-equivalents are commonly used as an alternative treatment option for these patients, however these treatments usually involve multiple surgical procedures and associated with high costs of production and repeated wound treatment. Here we describe a novel design and a proof-of-concept validation of a mobile skin bioprinting system that provides rapid on-site management of extensive wounds. Integrated imaging technology facilitated the precise delivery of either autologous or allogeneic dermal fibroblasts and epidermal keratinocytes directly into an injured area, replicating the layered skin structure. Excisional wounds bioprinted with layered autologous dermal fibroblasts and epidermal keratinocytes in a hydrogel carrier showed rapid wound closure, reduced contraction and accelerated re-epithelialization. These regenerated tissues had a dermal structure and composition similar to healthy skin, with extensive collagen deposition arranged in large, organized fibers, extensive mature vascular formation and proliferating keratinocytes.
- Published
- 2019
- Full Text
- View/download PDF
20. Regulation of the bi-directional cross-talk between ovarian cancer cells and adipocytes by SPARC
- Author
-
Bincy John, Alia Ghoneum, Shadi Qasem, Neveen Said, Ziyan T. Salih, Chirayu M Patel, and Christine Naczki
- Subjects
0301 basic medicine ,Cancer Research ,endocrine system diseases ,Transcription, Genetic ,adipocytes ,Biology ,Article ,Metastasis ,03 medical and health sciences ,chemistry.chemical_compound ,Mice ,0302 clinical medicine ,Adipocyte ,Cell Line, Tumor ,omentum ,Genetics ,medicine ,Animals ,Humans ,Neoplasm Invasiveness ,Osteonectin ,metastases ,Molecular Biology ,Cell Proliferation ,Mice, Knockout ,Ovarian Neoplasms ,Ovary ,Cell Differentiation ,SPARC ,medicine.disease ,Phenotype ,female genital diseases and pregnancy complications ,Coculture Techniques ,3. Good health ,Mice, Inbred C57BL ,030104 developmental biology ,ovarian cancer ,chemistry ,Cell culture ,030220 oncology & carcinogenesis ,Cancer cell ,Knockout mouse ,Cancer research ,Female ,Ovarian cancer ,Homing (hematopoietic) - Abstract
Ovarian cancer (OvCa) exhibits a specific predilection for metastasis to the omentum. Our earlier studies highlighted the tumour-suppressor effect of secreted protein acidic and rich in cysteine (SPARC) in OvCa through multi-faceted roles inhibiting cancer cell interactions within the peritoneal milieu. The goal of this study is to investigate the role of SPARC in OvCa interactions with omental adipocytes and its role in OvCa colonization in the omentum. We employed multi-pronged approach using primary omental adipocytes from Sparc knockout mice, genetically engineered human omental adipocytes in 3D co-cultures with OvCa cells, as well as treatment with recombinant SPARC protein. We show that SPARC suppresses multistep cascade in OvCa omental metastasis. SPARC inhibited in vivo and adipocyte-induced homing, proliferation, and invasion of OvCa cells. SPARC suppressed metabolic programming of both adipocytes and OvCa cells and exerted an inhibitory effect of adipocyte differentiation and their phenotypic switch to cancer-associated phenotype. Mechanistic studies revealed that this effect is mediated through inhibition of cEBPβ-NFkB-AP-1 transcription machinery. These findings define a novel and functionally important role of SPARC in OvCa and not only bridge the knowledge gap but highlight the need to consider SPARC protein expression in therapeutic development.
- Published
- 2018
21. Biology and treatment of metastasis of sarcoma to the brain
- Author
-
Shadi Qasem
- Subjects
03 medical and health sciences ,0302 clinical medicine ,General Immunology and Microbiology ,030220 oncology & carcinogenesis ,02 engineering and technology ,021001 nanoscience & nanotechnology ,0210 nano-technology ,General Biochemistry, Genetics and Molecular Biology - Published
- 2016
- Full Text
- View/download PDF
22. Biology and treatment of metastasis of sarcoma to the brain
- Author
-
Paul D. Savage, Michael D. Chan, Hui-Wen Lo, Kounosuke Watabe, Shadi Qasem, and Omar I. Ahmad
- Subjects
Leiomyosarcoma ,Chemotherapy ,General Immunology and Microbiology ,Brain Neoplasms ,medicine.medical_treatment ,Sarcoma ,Biology ,medicine.disease ,General Biochemistry, Genetics and Molecular Biology ,Metastasis ,Radiation therapy ,microRNA ,medicine ,Cancer research ,Humans ,Osteosarcoma ,Brain metastasis - Abstract
Sarcomas are rare tumors with devastating clinical consequences, often affecting children as well as adults. Brain metastasis in sarcoma is frequently preceded by lung metastasis. Common offenders include Ewing sarcoma, osteosarcoma and leiomyosarcoma. Although our understanding of sarcoma metastasis remains limited, several cellular factors and signaling pathways appear to play regulatory roles and/or exhibit prognostic values in sarcoma metastasis. In addition, MicroRNAs have been shown to have either positive or negative impact on sarcoma biology and metastasis. Sarcoma is considered one of the classic radio- and chemo-resistant brain metastasis, hence the use of multiple modalities in order to improve the therapeutic ratio and overcome the inherent resistance. Treatment modalities include surgical resection, chemotherapy, gamma knife radiosurgery and/or fractionated whole-brain radiotherapy. The efficacy of chemotherapy is limited by the ability of the drug(s) to cross the blood-brain barrier (BBB), and the chemosensitivity of the tumor to the chemotherapeutic agent. In this review, we discuss the pathology, biology and therapy for sarcoma brain metastasis.
- Published
- 2016
- Full Text
- View/download PDF
23. Ossifying fibromyxoid tumor: Report of a case with cytomorphologic description
- Author
-
Omar I. Ahmed, Ziyan T. Salih, and Shadi Qasem
- Subjects
Pathology ,medicine.medical_specialty ,Histology ,Soft Tissue Neoplasm ,medicine.diagnostic_test ,business.industry ,Ossification ,Fibromyxoid Tumor ,General Medicine ,Anatomy ,Histogenesis ,medicine.disease ,Pathology and Forensic Medicine ,Fine-needle aspiration ,Atypia ,Medicine ,medicine.symptom ,Differential diagnosis ,business ,Epithelioid cell - Abstract
Ossifying fibromyxoid tumor (OFMT) is a rare soft tissue neoplasm with uncertain histogenesis. Most cases behave in a clinically benign fashion; however, a small percentage of tumors may locally recur or metastasize. Herein we present a case of a 56-year-old man who presented with an enlarging left groin mass, left inner thigh numbness, burning paresthesia and discomfort in his left groin. The mass sampled by fine- needle aspiration and needle core biopsy. Cytology showed bland-appearing epithelioid cells with round nuclei and fine chromatin, with fragments of fibromyxoid stroma in the background. Immunohistochemical stains performed on the core biopsy showed that the lesional cells were focally positive for S100 protein and negative for desmin, smooth muscle actin, CD34 and cytokeratin AE1/AE3. A benign neoplasm was favored with ossifying fibromyxoid tumor as the main entity in the differential diagnosis. A subsequent resection showed a well-circumscribed 5 cm mass with firm consistency and focal areas of calcifications. Histologically, the tumor had a nodular growth pattern with relatively bland spindle cells containing round to oval nuclei suspended in a variably collagenous to myxoid stroma. Significant ossification and bone formation was also noted. There was no significant atypia, necrosis or increased mitoses. Ossifying fibromyxoid tumors have distinct cytologic features and should be considered in the differential diagnosis of soft tissue tumors with prominent ossification.
- Published
- 2015
- Full Text
- View/download PDF
24. En bloc spondylectomy for primary malignant fibrous histiocytoma of the thoracic spine with aortic involvement: case report
- Author
-
Shadi Qasem, Wesley Hsu, Aravind Somasundaram, Robert T. Wicks, and Adrian L Lata
- Subjects
Male ,medicine.medical_specialty ,Thoracic spine ,Aorta, Thoracic ,Histiocytoma, Malignant Fibrous ,Thoracic Vertebrae ,Blood Vessel Prosthesis Implantation ,Postoperative Complications ,Spinal cord compression ,medicine.artery ,Biopsy ,medicine ,Back pain ,Humans ,Neoplasm Invasiveness ,Neurologic Examination ,Aorta ,Spinal Neoplasms ,medicine.diagnostic_test ,business.industry ,Postoperative radiation ,Magnetic resonance imaging ,General Medicine ,Middle Aged ,medicine.disease ,Combined Modality Therapy ,Magnetic Resonance Imaging ,Surgery ,Radiotherapy, Adjuvant ,medicine.symptom ,business ,Vascular graft ,Follow-Up Studies - Abstract
In this article, the authors describe a 48-year-old man who initially presented with progressively worsening back pain. Magnetic resonance imaging revealed a soft-tissue mass involving the T10–11 vertebral bodies with extension anteriorly into the aorta as well as epidural extension without spinal cord compression. A biopsy of the mass showed findings consistent with a malignant fibrous histiocytoma (MFH). A total en bloc spondylectomy with resection and reconstruction of the involved aorta using a vascular graft was performed. The patient received postoperative radiation therapy and is neurologically intact at 18 months postoperatively. To the authors' knowledge, this is the first reported case of a spinal MFH resection with aortic reconstruction.
- Published
- 2015
- Full Text
- View/download PDF
25. Routine Hematoxylin and Eosin Stain Is Specific for the Diagnosis of Cytomegalovirus Infection in Gastrointestinal Biopsy Specimens
- Author
-
Ziyan T. Salih, Ling Guo, Tom C DeRoche, and Shadi Qasem
- Subjects
Adult ,Male ,Pathology ,medicine.medical_specialty ,Adolescent ,Biopsy ,H&E stain ,Congenital cytomegalovirus infection ,Cytomegalovirus ,Sensitivity and Specificity ,Endoscopy, Gastrointestinal ,Pathology and Forensic Medicine ,03 medical and health sciences ,Immunocompromised Host ,Young Adult ,0302 clinical medicine ,Predictive Value of Tests ,Medicine ,Humans ,030212 general & internal medicine ,Child ,Coloring Agents ,Hematoxylin ,Aged ,Aged, 80 and over ,Gastrointestinal tract ,medicine.diagnostic_test ,Staining and Labeling ,business.industry ,Reproducibility of Results ,Middle Aged ,medicine.disease ,Immunohistochemistry ,Gastroenteritis ,Cytomegalovirus infection ,Gastrointestinal Tract ,Predictive value of tests ,Child, Preschool ,Cytomegalovirus Infections ,Eosine Yellowish-(YS) ,030211 gastroenterology & hepatology ,Surgery ,Female ,Anatomy ,Complication ,business - Abstract
Background. Gastrointestinal cytomegalovirus (CMV) infection is a serious complication in immunocompromised patients; clinicians often expect expedited results for biopsy specimens. Our goal is to determine the accuracy of identification of CMV on hematoxylin and eosin (H&E) stain. Methods and Results. A total of 361 biopsy specimens from 273 patients with suspicion for CMV infection were retrieved. CMV was detected by immunohistochemistry (IHC) in 37 specimens acquired from 33 individual patients (average age = 54 years). Among the CMV-positive patients, 29 (88%) were reported to be immunosuppressed. Colon was the most common affected location. Of 37 CMV-positive specimens by IHC, 28 were positive by H&E (76%), 6 were negative (16%), and 3 were suspicious (8%). Of the 29 positive specimens on H&E, 28 were confirmed by IHC (97%) and 1 was indeterminate (3%). The sensitivity and specificity of H&E were 84% and 94%, respectively; the positive predictive value was 97%, and the negative predictive value was 93% ( P < .00001). Conclusion. Our results show that a preliminary diagnosis of CMV infection, based on H&E stains, can be reported with high specificity and low risk for false-positive results. Suspicious cases should be deferred pending the result of IHC stains.
- Published
- 2018
26. Stereotactic radiosurgery in the treatment of brain metastases from gynecologic primary cancer
- Author
-
Hannah, Johnston, Emory R, McTyre, Cristina K, Cramer, Glenn J, Lesser, Jimmy, Ruiz, J Daniel, Bourland, Kounosuke, Watabe, Hui-Wen, Lo, Shadi, Qasem, Adrian W, Laxton, Stephen B, Tatter, and Michael D, Chan
- Subjects
Case Report - Abstract
Brain metastases from gynecologic primary cancers are rare events, but they can be a cause of morbidity and mortality when they occur.This is a single institution retrospective study on patients with brain metastases from gynecologic primary cancer who received Gamma Knife stereotactic radiosurgery (SRS). Between 2000 and 2013, a total of 33 patients with brain metastases from gynecologic primary including cervical (n=2), endometrial (n=6) and ovarian cancers (n=25) were treated with SRS at our institution. Electronic medical records were reviewed to determine survival, patterns of failure and cause of death.Overall survival at 1, 2 and 5 years for the entire population was 47.1%, 21.7%, and 14.5%, respectively. There was no difference in survival between the primary cancers (log-rank p = 0.33). 36.4% patients died of neurologic death. Local failure at 1 and 2 years for the entire population was 10.4% and 14.3%, respectively. There was no difference in local failure between the primary cancers. Distant brain failure at 1, 2 and 5 years for the entire population was 20.6%, 27.7%, and 31.3%, respectively. On multivariate Cox Proportional Hazards analysis, age was the only predictor of overall survival (HR = 1.03, p = 0.01). Ovarian cancer patients had decreased risk of distant brain failure (HR = 0.17, p=0.005), whereas cervical cancer patients had an increased risk of distant brain failure (HR = 35.7, p = 0.001).SRS represents a feasible treatment option for patients with brain metastases from gynecologic cancer. Younger age is a positive prognostic factor. Ovarian cancer patients have lower risk of distant brain failure.
- Published
- 2018
27. The Relationship of Internet Dependence with Social Competence in Nursing Students of Hamadan University of Medical Sciences, Iran
- Author
-
Ziba Mohammadi, Shadi Qasemi, and Fatemeh Darabi
- Subjects
internet addiction disorder ,social skills ,students ,nurses ,Environmental technology. Sanitary engineering ,TD1-1066 ,Medicine ,Medicine (General) ,R5-920 - Abstract
Background: Dependence on the Internet leads to disruption or distress in various aspects of life. One of the important underlying factors of Internet addiction is the lack of social skills, and considering the importance of social skills as the core of social competence, the researchers decided to investigate the prevalence of Internet addiction and its relationship with social competence in this study in nursing students of Hamadan University of Medical Sciences, Hamadan, Iran. Methods: During a descriptive-analytical and cross-sectional study, 260 undergraduate nursing students were examined in the second half of the academic year 2018-2019 by stratified sampling method with proportional allocation. In order to collect data, a three-part questionnaire of demographic information and information related to the use of the Internet, Young's standard questionnaire, and Felner's social adequacy questionnaire were used. In the end, after being entered in the SSPS software, the data were analyzed using descriptive statistics and appropriate statistical analysis. Findings: The overall mean score of Internet addiction was mild. Most of the students (77.6%) had mild addiction and a small percentage (1.3%) had severe addiction to the Internet. The findings indicated that the overall average score of students' social competence was good. Besides, the majority of students (67.1%) had good, 28.1% had very good, and 4.8% had average social competence. A significant and negative correlation was found between Internet addiction and social competence, and students who had a higher average score of Internet addiction obtained a lower average score of social competence. Conclusion: Considering the inverse relationship between Internet dependence and social adequacy, it is recommended that universities and educational centers try to develop a culture and promote healthy behaviors in nursing students with various educational, counseling, and behavioral programs.
- Published
- 2023
28. Malignant Perivascular Epithelioid Cell Tumor Mimicking Renal Cell Carcinoma: A Diagnostic Pitfall
- Author
-
Natalya Hakim, Yevgen Chornenkyy, and Shadi Qasem
- Subjects
Pathology ,medicine.medical_specialty ,Kidney ,business.industry ,Melanoma ,General Medicine ,Liposarcoma ,medicine.disease ,Perivascular Epithelioid Cell ,HMB-45 ,medicine.anatomical_structure ,Renal cell carcinoma ,Carcinoma ,medicine ,business ,Epithelioid cell - Abstract
Introduction Perivascular epithelioid cell tumors (PEComas) are defined by the World Health Organization (WHO) as mesenchymal tumors arising from perivascular epithelioid cells with myomelanocytic immunophenotype. In the kidney, they are often referred to as epithelioid angimyolipoma (AML). Most are benign but some can be malignant. Their rarity and wide differential render diagnosis challenging. Case Presentation A 56-year-old male presented with a 3-month history of flank pain. Computed tomography (CT) identified bilateral necrotic heterogeneous enhancing kidney masses, with right significantly larger than left. Initially, the patient underwent a right radical nephrectomy. On gross examination, no tumor infiltration was observed. Histology demonstrated sheets of highly atypical cells with clear cytoplasm and easily identifiable nucleoli. Areas of spindle and rhabdoid differentiation were present. The initial diagnosis was renal clear cell (RCC) carcinoma, Fuhrman grade 4, with extensive rhabdoid and focal sarcomatoid features. A follow-up CT demonstrated a hypodense area within the right hepatic lobe. Status post liver resection and histomorphological examination, the lesion was identical to the renal mass except for focal areas of prominent epithelioid cells with eosinophilic cytoplasm. Immunohistochemical (IHC) stains of both masses were positive for Melan-A, HMB-45, and EMA but negative for PAX8, SOX10, S100, SMA, desmin, and cytokeratin. The initial diagnosis was amended to malignant AML with hepatic metastasis. Discussion and Conclusion Renal PEComa (epithelioid AML) is a rare tumor with a prevalence of 0.44%. While most are benign, some are malignant with metastatic potential. The differential diagnosis for PEComa is broad and includes more common tumors like RCC, melanoma, clear cell sarcoma, and liposarcoma. The presence of spindle and epithelioid histology with eosinophilic cytoplasm in RCC should prompt additional IHC workup (HMB45, Melan-A, SMA, and EMA) in order to exclude PEComa/AML.
- Published
- 2019
- Full Text
- View/download PDF
29. Biliary Duplication Cyst
- Author
-
Shadi Qasem, Perry Shen, and Reese W. Randle
- Subjects
medicine.medical_specialty ,medicine.diagnostic_test ,business.industry ,MEDLINE ,Magnetic resonance imaging ,General Medicine ,medicine.disease ,Text mining ,X ray computed ,Gene duplication ,medicine ,Cyst ,Radiology ,business - Published
- 2015
- Full Text
- View/download PDF
30. MDM2 Copy Numbers in Well-Differentiated and Dedifferentiated Liposarcoma
- Author
-
Anthony N. Snow, Shadi Qasem, Patrick L. Ware, Maya Gvalani, and Mark J. Pettenati
- Subjects
Pathology ,medicine.medical_specialty ,Dedifferentiated liposarcoma ,biology ,General Medicine ,In situ hybridization ,Liposarcoma ,medicine.disease ,medicine.anatomical_structure ,Gene duplication ,medicine ,biology.protein ,Atypia ,%22">Fish ,Retroperitoneal space ,Mdm2 ,neoplasms - Abstract
Objectives: MDM2 gene amplification is associated with well-differentiated (WDL) and dedifferentiated liposarcomas (DDL). Using fluorescent in situ hybridization (FISH), we sought to characterize various patterns of MDM2 amplification among the morphologic spectrum of liposarcoma. Methods: Forty-six cases of liposarcoma in various sites were examined and included 22 WDLs, 14 DLLs, and 10 negative control subjects. Results: The MDM2 amplification ratio (MDM2/CEP12) was lower in WDL (10.2) compared with DDL (18.3) cases (P = .0000002). An amplification ratio of 16 showed optimal sensitivity (0.86) and specificity (0.96) as a cutoff point for progression to DDL. Borderline areas, defined as tumors with increased cellularity and atypia but with preserved lipomatous differentiation, showed a significantly higher MDM2 ratio (17.5; P = .0007) compared with WDL. Central (retroperitoneal and intra-abdominal) tumors also showed a significantly higher MDM2 ratio than peripheral ones (P = .02). Conclusions: Differences in MDM2 amplification profiles among liposarcomas could help further define and predict progression to high-grade neoplasia.
- Published
- 2014
- Full Text
- View/download PDF
31. Mutational Landscapes of Smoking-Related Cancers in Caucasians and African Americans: Precision Oncology Perspectives at Wake Forest Baptist Comprehensive Cancer Center
- Author
-
Kristie L. Foley, Kexin Chen, Anastasia Shcherban, George Yacoub, Lance D. Miller, Angela Tatiana Alistar, Edward Abraham, Edgar D. Staren, Stefan C. Grant, W. Jeffrey Petty, Edward A. Levine, Gaurav Singal, Barry DeYoung, Matti Nykter, Bayard L. Powell, Lynne I. Wagner, Mac B. Robinson, Ralph D’ Agostino, Wei Zhang, Meng Yang, Ville Kytölä, Carol A. Albright, Shadi Qasem, Michael Goodman, Robin M. Petro, Gregory A. Hawkins, Boris Pasche, Ilya Shmulevich, Rhonda L. Bitting, Matthew Pagni, Liang Liu, Carl D. Langefeld, Vesteinn Thorsson, Umit Topaloglu, William Blackstock, Rodwige J. Desnoyers, and Vincent A. Miller
- Subjects
0301 basic medicine ,Oncology ,Genome instability ,Gerontology ,medicine.medical_specialty ,Mutation rate ,Methyltransferase ,Lung Neoplasms ,Population ,Medicine (miscellaneous) ,Genomics ,Chromatin remodeling ,White People ,03 medical and health sciences ,0302 clinical medicine ,Internal medicine ,medicine ,Tobacco Smoking ,Humans ,Pathology, Molecular ,education ,Pharmacology, Toxicology and Pharmaceutics (miscellaneous) ,Gene ,education.field_of_study ,Oncogene ,business.industry ,Sequence Analysis, DNA ,3. Good health ,Black or African American ,030104 developmental biology ,Urinary Bladder Neoplasms ,030220 oncology & carcinogenesis ,Mutation ,Tumor Suppressor Protein p53 ,business ,Colorectal Neoplasms ,Research Paper - Abstract
Background: Cancers related to tobacco use and African-American ancestry are under-characterized by genomics. This gap in precision oncology research represents a major challenge in the health disparities in the United States. Methods: The Precision Oncology trial at the Wake Forest Baptist Comprehensive Cancer Center enrolled 431 cancer patients from March 2015 to May 2016. The composition of these patients consists of a high representation of tobacco-related cancers (e.g., lung, colorectal, and bladder) and African-American ancestry (13.5%). Tumors were sequenced to identify mutations to gain insight into genetic alterations associated with smoking and/or African-American ancestry. Results: Tobacco-related cancers exhibit a high mutational load. These tumors are characterized by high-frequency mutations in TP53, DNA damage repair genes (BRCA2 and ATM), and chromatin remodeling genes (the lysine methyltransferases KMT2D or MLL2, and KMT2C or MLL3). These tobacco-related cancers also exhibit augmented tumor heterogeneities. Smoking related genetic mutations were validated by The Cancer Genome Atlas dataset that includes 2,821 cases with known smoking status. The Wake Forest and The Cancer Genome Atlas cohorts (431 and 7,991 cases, respectively) revealed a significantly increased mutation rate in the TP53 gene in the African-American subgroup studied. Both cohorts also revealed 5 genes (e.g. CDK8) significantly amplified in the African-American population. Conclusions: These results provide strong evidence that tobacco is a major cause of genomic instability and heterogeneity in cancer. TP53 mutations and key oncogene amplifications emerge as key factors contributing to cancer outcome disparities among different racial/ethnic groups.
- Published
- 2017
32. Staged Stereotactic Radiosurgery for Large Brain Metastases: Local Control and Clinical Outcomes of a One-Two Punch Technique
- Author
-
Adrian W. Laxton, Kounosuke Watabe, Fei Xing, Christina K. Cramer, Jimmy Ruiz, M.C. LeCompte, Michael T. Munley, Emory R. McTyre, Catherine Okoukoni, Ammoren E. Dohm, Michael D. Chan, Adrianna Henson, Hui-Wen Lo, Stephen B. Tatter, and Shadi Qasem
- Subjects
Adult ,Male ,medicine.medical_treatment ,Logistic regression ,Radiosurgery ,Lesion ,03 medical and health sciences ,0302 clinical medicine ,Therapeutic index ,Medicine ,Humans ,Cumulative incidence ,Neoplasm Metastasis ,Prospective cohort study ,Aged ,Retrospective Studies ,Aged, 80 and over ,business.industry ,Brain Neoplasms ,Retrospective cohort study ,Middle Aged ,Radiation therapy ,Treatment Outcome ,030220 oncology & carcinogenesis ,Surgery ,Female ,Neurology (clinical) ,medicine.symptom ,business ,Nuclear medicine ,030217 neurology & neurosurgery - Abstract
Background Treatment options are limited for large, unresectable brain metastases. Objective To report a single institution series of staged stereotactic radiosurgery (SRS) that allows for tumor response between treatments in order to optimize the therapeutic ratio. Methods Patients were treated with staged SRS separated by 1 mo with a median dose at first SRS of 15 Gy (range 10-21 Gy) and a median dose at second SRS of 14 Gy (range 10-18 Gy). Overall survival was evaluated using the Kaplan-Meier method. Cumulative incidences were estimated for neurological death, radiation necrosis, local failure (marginal or central), and distant brain failure. Absolute cumulative dose-volume histogram was created for each treated lesion. Logistic regression and competing risks regression were performed for each discrete dose received by a certain volume. Results Thirty-three patients with 39 lesions were treated with staged radiosurgery. Overall survival at 6 and 12 mo was 65.0% and 60.0%, respectively. Cumulative incidence of local failure at 6 and 12 mo was 3.2% and 13.3%, respectively. Of the patients who received staged therapy, 4 of 33 experienced local failure. Radiation necrosis was seen in 4 of 39 lesions. Two of 33 patients experienced a Radiation Therapy Oncology Group toxicity grade > 2 (2 patients had grade 4 toxicities). Dosimetric analysis revealed that dose (Gy) received by volume of brain (ie, VDose(Gy)) was associated with radiation necrosis, including the range V44.5Gy to V87.8Gy. Conclusion Staged radiosurgery is a safe and effective option for large, unresectable brain metastases. Prospective studies are required to validate the findings in this study.
- Published
- 2016
33. PGP9.5 Expression in Kidney Tumors
- Author
-
John Kss Phillip, Sami Belakhlef, and Shadi Qasem
- Subjects
Kidney ,medicine.anatomical_structure ,Expression (architecture) ,medicine ,Cancer research ,General Medicine ,Biology - Published
- 2016
- Full Text
- View/download PDF
34. Differentiating Intrarenal Ectopic Adrenal Tissue from Renal Clear-Cell Carcinoma
- Author
-
Ziyan T. Salih, Mustafa Yousif, Shadi Qasem, and Barry DeYoung
- Subjects
0301 basic medicine ,Renal clear cell carcinoma ,03 medical and health sciences ,Pathology ,medicine.medical_specialty ,030104 developmental biology ,0302 clinical medicine ,business.industry ,030220 oncology & carcinogenesis ,Adrenal tissue ,medicine ,General Medicine ,business - Published
- 2016
- Full Text
- View/download PDF
35. Mesenchymal Tumors of the Orbit: A Single Institutional Review
- Author
-
Ariel Frost, Yu Yang, and Shadi Qasem
- Subjects
genetic structures ,Geographic area ,business.industry ,Mesenchymal Tumor ,Mesenchymal stem cell ,Medicine ,sense organs ,General Medicine ,Anatomy ,Orbit (control theory) ,business ,eye diseases - Abstract
Objectives: Ocular specimens are relatively less common among all surgical specimens, and among them, orbital mesenchymal tumors are even less studied. Our goal is to study the prevalence and distribution of orbital mesenchymal tumor in our geographic area. Methods: We retrospectively reviewed the pathology archives for all orbital specimens between …
- Published
- 2016
- Full Text
- View/download PDF
36. Single-Institution Experience with 696 Temporal Artery Biopsies for the Evaluation of Giant Cell Arteritis
- Author
-
Shadi Qasem, Rebecca Steele, and Ariel Frost
- Subjects
Giant cell arteritis ,medicine.medical_specialty ,Pathology ,business.industry ,Medicine ,Temporal artery ,General Medicine ,Radiology ,Single institution ,business ,medicine.disease - Published
- 2016
- Full Text
- View/download PDF
37. Activation of the c-Met pathway mobilizes an inflammatory network in the brain microenvironment to promote brain metastasis of breast cancer
- Author
-
Linda J. Metheny-Barlow, Kerui Wu, Kounosuke Watabe, Sambad Sharma, Richard L. Carpenter, Boris Pasche, Michael D. Chan, Hui-Wen Lo, Fei Xing, Shadi Qasem, Yin Liu, and Xiaobo Zhou
- Subjects
0301 basic medicine ,Cancer Research ,C-Met ,medicine.medical_treatment ,Mice, Nude ,Inflammation ,Antineoplastic Agents ,Breast Neoplasms ,Article ,03 medical and health sciences ,chemistry.chemical_compound ,Mice ,0302 clinical medicine ,Cell Line, Tumor ,Stilbenes ,Cell Adhesion ,Tumor Microenvironment ,Medicine ,Animals ,Humans ,Neoplasm Invasiveness ,Cell adhesion ,Tumor microenvironment ,Neovascularization, Pathologic ,business.industry ,Brain Neoplasms ,Cancer ,Proto-Oncogene Proteins c-met ,medicine.disease ,CXCL1 ,030104 developmental biology ,Cytokine ,Oncology ,chemistry ,030220 oncology & carcinogenesis ,Immunology ,Cancer research ,Heterografts ,Female ,medicine.symptom ,business ,Transcriptome ,Brain metastasis ,Signal Transduction - Abstract
Brain metastasis is one of the chief causes of mortality in breast cancer patients, but the mechanisms that drive this process remain poorly understood. Here, we report that brain metastatic cells expressing high levels of c-Met promote the metastatic process via inflammatory cytokine upregulation and vascular reprogramming. Activated c-Met signaling promoted adhesion of tumor cells to brain endothelial cells and enhanced neovascularization by inducing the secretion of IL8 and CXCL1. Additionally, stimulation of IL1β secretion by activation of c-Met induced tumor-associated astrocytes to secrete the c-Met ligand HGF. Thus, a feed-forward mechanism of cytokine release initiated and sustained by c-Met fed a vicious cycle that generated a favorable microenvironment for metastatic cells. Reinforcing our results, we found that pterostilbene, a compound that penetrates the blood–brain barrier, could suppress brain metastasis by targeting c-Met signaling. These findings suggest a potential utility of this natural compound for chemoprevention. Cancer Res; 76(17); 4970–80. ©2016 AACR.
- Published
- 2016
38. 226 HPV and p16 in Mesenchymal Tumors and Sarcomatoid Carcinoma of the Head and Neck
- Author
-
Nora Zbieranski, Shadi Qasem, Parisa Mansoori, Ariel Frost, and Stacey S O'Neill
- Subjects
Pathology ,medicine.medical_specialty ,business.industry ,Mesenchymal stem cell ,Medicine ,General Medicine ,Head and neck ,business ,Sarcomatoid carcinoma ,medicine.disease - Published
- 2018
- Full Text
- View/download PDF
39. Helicobacter pylori
- Author
-
S Brooks Smith, Shadi Qasem, Randall L. Perry, and Anthony N. Snow
- Subjects
Adult ,Male ,Pathology ,medicine.medical_specialty ,Adolescent ,Stain ,Helicobacter Infections ,03 medical and health sciences ,0302 clinical medicine ,Biopsy ,Pyloric Antrum ,Humans ,Medicine ,Gastric biopsy ,Child ,Aged ,Retrospective Studies ,Aged, 80 and over ,Helicobacter pylori ,biology ,medicine.diagnostic_test ,business.industry ,Infant ,Retrospective cohort study ,General Medicine ,Middle Aged ,biology.organism_classification ,3. Good health ,Child, Preschool ,Gastritis ,030220 oncology & carcinogenesis ,Immunohistochemistry ,Female ,030211 gastroenterology & hepatology ,business - Abstract
We performed a retrospective study to investigate the usefulness of immunohistochemical stains for the diagnosis of Helicobacter pylori (HP). We reviewed 200 consecutive gastric biopsy specimens, as well as immunohistochemical stains for HP. Of the biopsy specimens, 32 were positive for HP by immunohistochemical staining; of those, HP was seen on HE stains in 29 cases (91%). The number of high-power fields required to detect HP on HE-stained slides ranged from 1 to 25 (mean, 5.75). Combined significant (2+ or 3+) acute and chronic inflammation had a specificity of 98% and a negative predictive value of 97%. Our results show that, in our institution, HP can be seen relatively easily with HE staining in the majority of cases; however, a small number of cases with significant inflammation can be missed if stains are not used.
- Published
- 2012
- Full Text
- View/download PDF
40. Survival and Failure Outcomes Predicted By Brain Metastasis Kinetics Following Initial Distant Brain Failure in Melanoma Patients Treated Upfront with Stereotactic Radiosurgery Alone
- Author
-
Adrian W. Laxton, Shadi Qasem, Kounosuke Watabe, Michael Farris, Fei Xing, Christina K. Cramer, Catherine Okoukoni, Adrianna Henson, M.C. LeCompte, Emory R. McTyre, Pierre L. Triozzi, Stephen B. Tatter, Mel D. Chan, and Michael T. Munley
- Subjects
Cancer Research ,medicine.medical_specialty ,Radiation ,business.industry ,medicine.medical_treatment ,Melanoma ,medicine.disease ,Radiosurgery ,030218 nuclear medicine & medical imaging ,Surgery ,03 medical and health sciences ,0302 clinical medicine ,Oncology ,030220 oncology & carcinogenesis ,medicine ,Radiology, Nuclear Medicine and imaging ,Radiology ,business ,Brain metastasis - Published
- 2017
- Full Text
- View/download PDF
41. Combined and Alternating Topical Corticosteroids and Food-Elimination Diet May Reduce Steroid Burden while Maintaining Efficacy of Treatment: A Retrospective Cohort Study of a Clinical Care Protocol in Eosinophilic Esophagitis
- Author
-
Craig C. Reed, Evan S. Dellon, Anca Safta, Shadi Qasem, Elizabeth T. Jensen, and Angie Almond
- Subjects
medicine.medical_specialty ,Hepatology ,business.industry ,medicine.medical_treatment ,Gastroenterology ,Retrospective cohort study ,medicine.disease ,Surgery ,Steroid ,Internal medicine ,Elimination diet ,Medicine ,Clinical care ,business ,Eosinophilic esophagitis - Published
- 2017
- Full Text
- View/download PDF
42. B Cells Are Increased in Type 2 Endometrial Carcinoma
- Author
-
Michel Kelly, Heidi L. Weiss, Mustafa Yousif, Brandon Say, Shadi Qasem, and Brian Burgess
- Subjects
business.industry ,Carcinoma ,Cancer research ,Medicine ,General Medicine ,business ,medicine.disease - Published
- 2018
- Full Text
- View/download PDF
43. Discovery of a predictive protein biomarker for leptomeningeal disease after craniotomy and radiation
- Author
-
Stacey S O'Neill, Michael H. Soike, Cristina M. Furdui, Michael D. Chan, Emory R. McTyre, Kounosuke Watabe, Shadi Qasem, Stephen B. Tatter, Christopher Rodman, Adrian W. Laxton, Thomas Lycan, Jimmy Ruiz, Jingyun Lee, and Jing Su
- Subjects
Cancer Research ,Pathology ,medicine.medical_specialty ,animal structures ,business.industry ,medicine.medical_treatment ,Disease progression ,food and beverages ,Resection ,Oncology ,medicine ,LEPTOMENINGEAL DISEASE ,Biomarker (medicine) ,business ,Craniotomy - Abstract
2068Background: Leptomeningeal disease (LMD) is a common but morbid disease progression after craniotomy for resection of brain metastases (BrM). LMD has been observed most commonly with breast can...
- Published
- 2018
- Full Text
- View/download PDF
44. The spatial distribution of brain metastasis
- Author
-
Jimmy Ruiz, Jingyun Lee, Stacey S O'Neill, Michael D. Chan, Stephen B. Tatter, Christopher T. Whitlow, Cristina M. Furdui, M.C. LeCompte, Thomas Lycan, Richard Barcus, Shadi Qasem, Pierre L. Triozzi, Emory R. McTyre, and Michael H. Soike
- Subjects
Cancer Research ,Oncology ,business.industry ,Medicine ,business ,Spatial distribution ,medicine.disease ,Neuroscience ,Brain metastasis - Abstract
e14000Background: The spatial distribution of brain metastasis has historically been assumed to be uniform; however, emerging evidence suggests that certain tumor characteristics may be associated ...
- Published
- 2018
- Full Text
- View/download PDF
45. Erdheim chester disease presenting as bone pain with a lytic lesion: Case history and review of the literature
- Author
-
Alexander H. Jinnah, Shadi Qasem, and Cynthia L. Emory
- Subjects
0301 basic medicine ,Cancer Research ,Pathology ,medicine.medical_specialty ,Open biopsy ,genetic structures ,medicine.diagnostic_test ,business.industry ,CD68 ,Magnetic resonance imaging ,Disease ,medicine.disease ,Lesion ,Pathogenesis ,03 medical and health sciences ,030104 developmental biology ,0302 clinical medicine ,Oncology ,030220 oncology & carcinogenesis ,Erdheim–Chester disease ,medicine ,Radiology, Nuclear Medicine and imaging ,medicine.symptom ,business ,Bone pain - Abstract
Erdheim Chester Disease (ECD) is characterized by organ infiltration by CD68 positive and CD1a negative non-LangerhansHistiocytes. The presentation of ECD can vary from bone pain due to bone infiltration to multi-systemic forms involving thecardiovascular system. The prognosis of ECD is poor; however, with increased understanding of the pathogenesis, this has led tothe evolution of new therapeutic strategies. Because of the increased need for understanding this disease we present a case of a man, who presented to us with bone painand radiographs showing a lytic lesion in his left femur. Upon further investigation with magnetic resonance (MR) imaging andtechnetium 99 m bone scan we chose to undergo an open biopsy, which led to the definitive diagnosis. We outline the currenttreatment regimen and its evolution as our understanding of the pathogenesis of ECD has increased.
- Published
- 2016
- Full Text
- View/download PDF
46. Targeting the Sonic Hedgehog Signaling Pathway: Review of Smoothened and GLI Inhibitors
- Author
-
Richard L. Carpenter, Tadas Rimkus, Shadi Qasem, Michael D. Chan, and Hui-Wen Lo
- Subjects
0301 basic medicine ,Cancer Research ,animal structures ,medicine.medical_treatment ,Cellular differentiation ,PTCH ,Vismodegib ,Review ,tGLI1 ,Bioinformatics ,lcsh:RC254-282 ,Sonidegib ,Targeted therapy ,03 medical and health sciences ,chemistry.chemical_compound ,sonic hedgehog pathway ,smoothened ,inhibitors ,medicine ,Basal cell carcinoma ,Sonic hedgehog ,biology ,lcsh:Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,medicine.disease ,targeted therapy ,Hedgehog signaling pathway ,3. Good health ,030104 developmental biology ,Oncology ,chemistry ,embryonic structures ,Cancer research ,biology.protein ,Smoothened ,medicine.drug ,GLI - Abstract
The sonic hedgehog (Shh) signaling pathway is a major regulator of cell differentiation, cell proliferation, and tissue polarity. Aberrant activation of the Shh pathway has been shown in a variety of human cancers, including, basal cell carcinoma, malignant gliomas, medulloblastoma, leukemias, and cancers of the breast, lung, pancreas, and prostate. Tumorigenesis, tumor progression and therapeutic response have all been shown to be impacted by the Shh signaling pathway. Downstream effectors of the Shh pathway include smoothened (SMO) and glioma-associated oncogene homolog (GLI) family of zinc finger transcription factors. Both are regarded as important targets for cancer therapeutics. While most efforts have been devoted towards pharmacologically targeting SMO, developing GLI-targeted approach has its merit because of the fact that GLI proteins can be activated by both Shh ligand-dependent and -independent mechanisms. To date, two SMO inhibitors (LDE225/Sonidegib and GDC-0449/Vismodegib) have received FDA approval for treating basal cell carcinoma while many clinical trials are being conducted to evaluate the efficacy of this exciting class of targeted therapy in a variety of cancers. In this review, we provide an overview of the biology of the Shh pathway and then detail the current landscape of the Shh-SMO-GLI pathway inhibitors including those in preclinical studies and clinical trials.
- Published
- 2016
47. Tissue Processing and Staining for Histological Analyses
- Author
-
Shadi Qasem and Mustafa Yousif
- Subjects
Pathology ,medicine.medical_specialty ,Tissue microarray ,H&E stain ,medicine ,Immunohistochemistry ,Tissue Processing ,Histology ,Anatomy ,Biology ,Stain ,Staining ,Fixation (histology) - Abstract
The process of preparing tissue for histological analysis begins with tissue fixation, typically in formalin, followed by processing into paraffin wax, embedding, and cutting thin sections that are affixed to glass slides. Hematoxylin and eosin is the standard stain used for tissue analysis. In addition, there is a long list of histochemical, immunofluorescent, and immunohistochemical stains that aid in differentiating tissue components and identifying certain pathological processes.
- Published
- 2016
- Full Text
- View/download PDF
48. Prognostic Molecular Subtypes of Low-Grade Cancer of the Appendix
- Author
-
Kathleen A. Cummins, Konstantinos I. Votanopoulos, Ralph B. D'Agostino, John Philip, Perry Shen, Jimmy Ruiz, Jeff W. Chou, Lance D. Miller, Edward A. Levine, and Shadi Qasem
- Subjects
0301 basic medicine ,Oncology ,Adult ,Genetic Markers ,Male ,medicine.medical_specialty ,Pathology ,Kaplan-Meier Estimate ,Article ,Transcriptome ,Cohort Studies ,03 medical and health sciences ,0302 clinical medicine ,Predictive Value of Tests ,Internal medicine ,Medicine ,Cluster Analysis ,Humans ,Progression-free survival ,Proportional Hazards Models ,business.industry ,Proportional hazards model ,Gene Expression Profiling ,Cancer ,Middle Aged ,medicine.disease ,Prognosis ,Gene expression profiling ,030104 developmental biology ,Gene cassette ,Appendiceal Neoplasms ,030220 oncology & carcinogenesis ,Predictive value of tests ,Surgery ,Hyperthermic intraperitoneal chemotherapy ,Female ,Neoplasm Grading ,business - Abstract
Background Appendiceal cancer (AC) patients treated with cytoreductive surgery (CRS) and hyperthermic intraperitoneal chemotherapy (HIPEC) often demonstrate an unpredictable variability in their survival outcomes. Biomarkers predictive of CRS/HIPEC efficacy could better guide treatment decisions. We hypothesized that variation in the transcriptional programming of AC tumors might distinguish molecular subtypes with differential outcomes after CRS/HIPEC. Study Design Gene expression profiles of 2 AC cohorts were analyzed using Affymetrix whole-genome expression microarrays. Hierarchical clustering methods, Kaplan-Meier analysis, and Cox regression models were used to discover and validate prognostic molecular subtypes of AC. Gene set enrichment analysis was used to infer pathologic attributes of the molecular subtypes. Results Unsupervised hierarchical clustering analysis of tumor expression profiles revealed a 139-gene cassette that distinguished 2 molecular subtypes (based on low vs high expression of the gene cassette) with statistically significant survival differences (disease-specific survival, p = 0.0075; progression-free survival, p = 0.0072). In a second AC cohort, the 139-gene cassette reproducibly partitioned tumors into subtypes with significant survival differences. Tumors showing high relative expression of the genes comprising the cassette associated with poor survival outcomes (disease-specific survival, p = 0.047; progression-free survival, p = 0.0079), and exhibited gene expression patterns enriched for oncogenic processes and pathways. The prognostic value of the molecular subtypes was specific for low-grade appendiceal tumors (disease-specific survival, p = 0.028; progression-free survival, p = 0.0016), and remained significant in the presence of conventional prognostic markers, including grade, surgical resection score, Eastern Cooperative Oncology Group status, and age. Conclusions The 139-gene cassette can have actionable clinical utility for identifying low-grade appendiceal tumor molecular subtypes predictive of therapeutic efficacy of CRS/HIPEC.
- Published
- 2015
49. Pseudo-pseudomyxoma peritonei from peritoneal sarcomatosis
- Author
-
Ling Guo, Shadi Qasem, Edward A. Levine, and Shuja Ahmed
- Subjects
medicine.medical_specialty ,Abdominal pain ,Myxoid liposarcoma ,business.industry ,Sarcomatosis ,General Medicine ,medicine.disease ,Surgery ,Inguinal hernia ,medicine ,Pseudomyxoma peritonei ,Hyperthermic intraperitoneal chemotherapy ,Sarcoma ,medicine.symptom ,business ,Rare disease - Abstract
Background: Pseudomyxoma peritonei (PMP) is a rare clinical entity of mucinous ascites, most commonly associated with appendiceal mucinous neoplasms. Cytoreductive surgery (CRS) and hyperthermic intraperitoneal chemotherapy (HIPEC) remains the current standard of care for PMP. Peritoneal sarcomatosis (PS) is an exceptionally rare disease with a poor prognosis. PMP associated with PS has not been previously described. The role of cytoreductive surgery and hyperthermic intraperitoneal chemotherapy for PS with or without PMP is not well-defined. PS manifesting like PMP has not been previously described. Case presentation: A 74-year-old patient with several weeks history of vague abdominal pain and increased abdominal girth was referred to our facility after incidental finding of PMP during laparoscopic inguinal hernia repair. After complete work-up, he was advised to undergo CRS/HIPEC. Intra-operatively, he was noted to have extensive mucinous ascites and underwent aggressive CRS and HIPEC Result: Final pathology revealed myxoid liposarcoma with associated intraperitoneal mucin dissemination, which was confirmed with cytogenetic analysis. Conclusion: We describe a rare case of pseudomyxoma peritonei originating from an intra-abdominal sarcoma. We propose the term of “pseudo-pseudomyxoma peritonei” to appropriately describe this unusual clinical event.
- Published
- 2015
- Full Text
- View/download PDF
50. 314 Vimentin Stain: A Useful Stain or an Ancient Change
- Author
-
Shadi Qasem, Barry DeYoung, and Yu Yang
- Subjects
Kidney ,Pathology ,medicine.medical_specialty ,Value based care ,Vimentin ,General Medicine ,Biology ,medicine.disease ,Stain ,Epithelium ,medicine.anatomical_structure ,Carcinosarcoma ,medicine ,biology.protein ,Epithelial–mesenchymal transition - Published
- 2018
- Full Text
- View/download PDF
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.