14 results on '"Shahaf Armon"'
Search Results
2. The multiscale nature of leaf growth fields
- Author
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Shahaf Armon, Michael Moshe, and Eran Sharon
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Astrophysics ,QB460-466 ,Physics ,QC1-999 - Abstract
Plant leaves are out of equilibrium active solid sheets that grow in a decentralized fashion by deforming its unit cells while maintaining a typical shape. Here, the authors measure the surface growth of Tobacco leaves at high spatial and temporal resolution, and find that growth dynamics is dominated by sharp fluctuations at the cellular scale, suggesting that it is regulated and correlated in space and time.
- Published
- 2021
- Full Text
- View/download PDF
3. Mechanical Stress Induces Remodeling of Vascular Networks in Growing Leaves.
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Yohai Bar-Sinai, Jean-Daniel Julien, Eran Sharon, Shahaf Armon, Naomi Nakayama, Mokhtar Adda-Bedia, and Arezki Boudaoud
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Biology (General) ,QH301-705.5 - Abstract
Differentiation into well-defined patterns and tissue growth are recognized as key processes in organismal development. However, it is unclear whether patterns are passively, homogeneously dilated by growth or whether they remodel during tissue expansion. Leaf vascular networks are well-fitted to investigate this issue, since leaves are approximately two-dimensional and grow manyfold in size. Here we study experimentally and computationally how vein patterns affect growth. We first model the growing vasculature as a network of viscoelastic rods and consider its response to external mechanical stress. We use the so-called texture tensor to quantify the local network geometry and reveal that growth is heterogeneous, resembling non-affine deformations in composite materials. We then apply mechanical forces to growing leaves after veins have differentiated, which respond by anisotropic growth and reorientation of the network in the direction of external stress. External mechanical stress appears to make growth more homogeneous, in contrast with the model with viscoelastic rods. However, we reconcile the model with experimental data by incorporating randomness in rod thickness and a threshold in the rod growth law, making the rods viscoelastoplastic. Altogether, we show that the higher stiffness of veins leads to their reorientation along external forces, along with a reduction in growth heterogeneity. This process may lead to the reinforcement of leaves against mechanical stress. More generally, our work contributes to a framework whereby growth and patterns are coordinated through the differences in mechanical properties between cell types.
- Published
- 2016
- Full Text
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4. Cytoskeletal networks are adaptive active elastic filamentous materials that design their own shape in response to system geometry
- Author
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Gefen Livne, Shachar Gat, Shahaf Armon, and Anne Bernheim-Groswasser
- Abstract
Living systems adopt diversity of shapes. These morphological changes, which range from cell to organismal scales1–4, commonly rely on intrinsic contractile stresses generated by myosin in the cell cytoskeleton, an adaptive active contractile filamentous material, whose molecular constituents, convert chemical energy to produce mechanical work5–7. How these intrinsically active stresses arise in complex 3D shapes and how shape deformation is controlled remains poorly understood. Here, we demonstrate that, initially homogenousnot-prepatternedelastic actomyosin networks spontaneously self-organize in a family of 3D shapes through distinct dynamical patterns. Shape selection is encoded in system size to thickness aspect ratio, indicating shaping scalability. The final configurations show surprisingly simple scaling dependence on system dimensions. Altogether, cytoskeletal networks form a class of adaptive active materials, autonomously designing their own shape in response to system geometry, without needing specific pre-programming. This simplicity present huge advantage for developing bio-soft robots with desired target shapes.
- Published
- 2023
5. Pressure-induced Shape-shifting of Helical Bacteria
- Author
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César L. Pastrana, Luyi Qiu, Shahaf Armon, Ulrich Gerland, and Ariel Amir
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Biological Physics (physics.bio-ph) ,Soft Condensed Matter (cond-mat.soft) ,FOS: Physical sciences ,General Chemistry ,Physics - Biological Physics ,Condensed Matter - Soft Condensed Matter ,Condensed Matter Physics - Abstract
Many bacterial species are helical in form, including the widespread pathogen H. pylori. Motivated by recent experiments on H. pylori showing that cell wall synthesis is not uniform, we investigate the possible formation of helical cell shape induced by elastic heterogeneity. We show, experimentally and theoretically, that helical morphogenesis can be produced by pressurizing an elastic cylindrical vessel with helical reinforced lines. The properties of the pressurized helix are highly dependent on the initial helical angle of the reinforced region. We find that steep angles result in crooked helices with, surprisingly, reduced end-to-end distance upon pressurization. This work helps to explain the possible mechanisms for the generation of helical cell morphologies and may inspire the design of novel pressure-controlled helical actuators.
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- 2022
- Full Text
- View/download PDF
6. Wrinkling and buckling instabilities of contractile suspended actomyosin sheets
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Gefen Livne, Shahaf Armon, and Anne Bernheim
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Biophysics - Published
- 2023
7. Modeling epithelial tissues as active-elastic sheets reproduce contraction pulses and predict rip resistance
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Manu Prakash, Shahaf Armon, Avraham Moriel, Hillel Aharoni, and Matthew S. Bull
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QB460-466 ,Physiological function ,Materials science ,Physics ,QC1-999 ,Biophysics ,General Physics and Astronomy ,Astrophysics ,Contraction (operator theory) ,Synthetic materials - Abstract
Confluent epithelial tissues can be viewed as soft active solids, as their individual cells contract in response to local conditions. Little is known about the emergent properties of such materials. Empirical observations have shown contraction waves propagation in various epithelia, yet the governing mechanism, as well as its physiological function, is still unclear. Here we propose an experiment-inspired model for such dynamic epithelia. We show how the widespread cellular response of contraction-under-tension is sufficient to give rise to propagating contraction pulses, by mapping numerically and theoretically the consequences of such a cellular response. The model explains observed phenomena but also predicts enhanced rip-resistance as an emergent property of such cellular sheets. Unlike healing post-rupture, these sheets avoid it by actively re-distributing external stresses across their surface. The mechanism is relevant to a broad class of tissues, especially such under challenging mechanical conditions, and may inspire engineering of synthetic materials. Observations on confluent epithelial tissues show the emergence of dynamic contraction patterns that are suspected to be governed mechanically. Here, the authors propose a model for epithelial sheets and show that cells’ Extension-Induced-Contraction response explains experimentally-observed contraction pulses, that along with a cell softening response enhances epithelial resistance to rupture.
- Published
- 2021
8. Epithelial Tissues as Active Solids: From Nonlinear Contraction Pulses to Rupture Resistance
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Matthew S. Bull, Manu Prakash, Avraham Moriel, Hillel Aharoni, and Shahaf Armon
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Chemical activity ,Dorsum ,Cellular activity ,medicine.anatomical_structure ,Contraction (grammar) ,Chemistry ,medicine ,Biophysics ,Epithelial Physiology ,Nonlinear contraction ,Epithelium ,Intracellular - Abstract
Epithelial tissues in many contexts can be viewed as soft active solids. Their active nature is manifested in the ability of individual cells within the tissue to contract and/or remodel their mechanical properties in response to various conditions. Little is known about the emergent properties of such materials. Specifically, how an individual cellular activity gives rise to collective spatiotemporal patterns is not fully understood. Recently we reported the observation of ultrafast contraction pulses in the dorsal epithelium of T.adhaerens in vivo [1] and speculated these propagate via mechanical fields. Other accumulating evidence suggest mechanics is involved in similar contractile patterns in embryonic development in vivo and in cellular monolayers in vitro. Here we show that a widespread cellular response – activation of contraction in response to stretch – is sufficient to give rise to nonlinear propagating contraction pulses. Using a minimal numerical model and theoretical considerations we show how such mechanical pulses emerge and propagate, spontaneously or in response to external stretch. The model – whose mathematical structure resembles that of reaction-diffusion systems – explains observed phenomena in T. adhaerens (e.g. excitable or spontaneous pulses, pulse interaction) and predicts other phenomena (e.g. symmetric strain profile, “spike trains”). Finally, we show that in response to external tension, such an active two-dimensional sheet lowers and dynamically distributes the strains across its surface, hence facilitating tissue resistance to rupture. Adding a cellular softening-threshold further enhances the tissue resistance to rupture at cell-cell junctions. As cohesion is at the heart of epithelial physiology, our model may be relevant to many other epithelial systems, even if manifested at different time/length scales.SignificanceOur work demonstrates that many observed dynamical phenomena in epithelial tissues can be explained merely by mechanical cell-cell interactions, and do not require chemical diffusion or transport between cells (though chemical activity may participate in relevant intracellular processes). Specifically, we show that single cell extension-induced-contraction (EIC) is sufficient to generate propagating contraction pulses, which also increase the tissue’s resistance to rupture, an essential function of epithelia. Our results may shed light on how epithelial tissues function under challenging physiological conditions, e.g. in lung, gut, vasculature and other biomedical contexts. Our results may also be relevant in the study of early evolution of multicellularity and the nervous-muscular systems. Finally, the work offers guidelines for designing soft synthetic solids with improved mechanical properties.
- Published
- 2020
9. Ultrafast epithelial contractions provide insights into contraction speed limits and tissue integrity
- Author
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Manu Prakash, Andrés Aranda-Díaz, Matthew S. Bull, and Shahaf Armon
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0301 basic medicine ,Aquatic Organisms ,Contraction (grammar) ,Apical cell ,Myosins ,Epithelium ,Extracellular matrix ,03 medical and health sciences ,Live cell imaging ,Trichoplax ,medicine ,Animals ,Placozoa ,Cells, Cultured ,Multidisciplinary ,biology ,Chemistry ,Biomechanics ,Epithelial Cells ,biology.organism_classification ,Actins ,Multicellular organism ,030104 developmental biology ,medicine.anatomical_structure ,PNAS Plus ,Biophysics - Abstract
By definition of multicellularity, all animals need to keep their cells attached and intact, despite internal and external forces. Cohesion between epithelial cells provides this key feature. To better understand fundamental limits of this cohesion, we study the epithelium mechanics of an ultrathin (∼25 μm) primitive marine animal Trichoplax adhaerens , composed essentially of two flat epithelial layers. With no known extracellular matrix and no nerves or muscles, T. adhaerens has been claimed to be the “simplest known living animal,” yet is still capable of coordinated locomotion and behavior. Here we report the discovery of the fastest epithelial cellular contractions known in any metazoan, to be found in T. adhaerens dorsal epithelium (50% shrinkage of apical cell area within one second, at least an order of magnitude faster than other known examples). Live imaging reveals emergent contractile patterns that are mostly sporadic single-cell events, but also include propagating contraction waves across the tissue. We show that cell contraction speed can be explained by current models of nonmuscle actin–myosin bundles without load, while the tissue architecture and unique mechanical properties are softening the tissue, minimizing the load on a contracting cell. We propose a hypothesis, in which the physiological role of the contraction dynamics is to resist external stresses while avoiding tissue rupture (“active cohesion”), a concept that can be further applied to engineering of active materials.
- Published
- 2018
10. Ultra-fast cellular contractions in the epithelium ofT. adhaerensand the 'active cohesion' hypothesis
- Author
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Manu Prakash, Bull, Andrés Aranda-Díaz, and Shahaf Armon
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Tissue architecture ,Contraction (grammar) ,biology ,Chemistry ,Apical cell ,biology.organism_classification ,Epithelium ,Cell biology ,medicine.anatomical_structure ,Live cell imaging ,Cell contraction ,Trichoplax ,medicine ,Ultra fast - Abstract
By definition of multi-cellularity, all animals need to keep their cells attached and intact, despite internal and external forces. Cohesion between epithelial cells provides this key feature. In order to better understand fundamental limits of this cohesion, we study the epithelium mechanics of an ultra-thin (~25 um) primitive marine animalTrichoplax adhaerens, composed essentially of two flat epithelial layers. With no known extra-cellular-matrix and no nerves or muscles,T. adhaerenswas claimed the “simplest known living animal”, yet is still capable of coordinated locomotion and behavior. Here we report the discovery of the fastest epithelial cellular contractions to date to be found inT. adhaerensdorsal epithelium (50% shrinkage of apical cell area within one second, at least an order of magnitude faster than known examples). Live imaging reveals emergent contractile patterns that are mostly sporadic single-cell events, but also include propagating contraction waves across the tissue. We show that cell contraction speed can be explained by current models of non-muscle actin-myosin bundles without load, while the tissue architecture and unique mechanical properties are softening the tissue, minimizing the load on a contracting cell. We propose a hypothesis, in which the physiological role of the contraction dynamics is to avoid tissue rupture (“active cohesion”), a novel concept that can be further applied to engineering of active materials.One Sentence SummaryWe report the fastest epithelial cell contractions known to date, show they fit the kinematics arising from current cytoskeletal models, and suggest the extreme tissue dynamics is a means to actively avoid rupture.
- Published
- 2018
11. Quantitative phenotyping of leaf margins in three dimensions, demonstrated on KNOTTED and TCP trangenics in Arabidopsis
- Author
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Shahaf Armon, Eran Sharon, Naomi Ori, and Osnat Yanai
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Current (mathematics) ,Geodesic ,Physiology ,growth ,Arabidopsis ,Plant Science ,Biology ,Curvature ,leaf shape ,Zea mays ,Measure (mathematics) ,Dexamethasone ,lobes ,Botany ,differential geometry ,Plant Proteins ,Homeodomain Proteins ,Models, Genetic ,Waviness ,Function (mathematics) ,Plants, Genetically Modified ,waviness ,Plant Leaves ,Phenotype ,Differential geometry ,curvature ,Biological system ,Research Paper ,Transcription Factors ,Geodesic curvature - Abstract
Summary Three-dimensional geometry of leaf margins is an important shape characteristic to distinguish different leaf phenotypes. Novel geometrical methods were defined, measured, and used to quantify waviness and lobiness of leaves., The geometry of leaf margins is an important shape characteristic that distinguishes among different leaf phenotypes. Current definitions of leaf shape are qualitative and do not allow quantification of differences in shape between phenotypes. This is especially true for leaves with some non-trivial three-dimensional (3D) configurations. Here we present a novel geometrical method novel geometrical methods to define, measure, and quantify waviness and lobiness of leaves. The method is based on obtaining the curve of the leaf rim from a 3D surface measurement and decomposing its local curvature vector into the normal and geodesic components. We suggest that leaf waviness is associated with oscillating normal curvature along the margins, while lobiness is associated with oscillating geodesic curvature. We provide a way to integrate these local measures into global waviness and lobiness quantities. Using these novel definitions, we analysed the changes in leaf shape of two Arabidopsis genotypes, either as a function of gene mis-expression induction level or as a function of time. These definitions and experimental methods open the way for a more quantitative study of the shape of leaves and other growing slender organs.
- Published
- 2014
12. Leaf growth is conformal
- Author
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Karen Alim, Shahaf Armon, Arezki Boudaoud, Boris I. Shraiman, Max Planck Institute for Dynamics and Self-Organization (MPIDS), Max-Planck-Gesellschaft, The Hebrew University of Jerusalem (HUJ), University of California [Santa Barbara] (UC Santa Barbara), University of California (UC), Reproduction et développement des plantes (RDP), École normale supérieure de Lyon (ENS de Lyon)-Institut National de la Recherche Agronomique (INRA)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Centre National de la Recherche Scientifique (CNRS), National Science Foundation [NSF PHY11-25915, NSF PHY05-51164], Deutsche Forschungsgemeinschaft (DFG) [SFB-937/A19]Deutsche Akademie der Naturforscher Leopoldina, Herbert Levine, European Project: 307387,EC:FP7:ERC,ERC-2012-StG_20111012,PHYMORPH(2012), University of California [Santa Barbara] (UCSB), University of California, Centre National de la Recherche Scientifique (CNRS)-Université Claude Bernard Lyon 1 (UCBL), and Université de Lyon-Université de Lyon-Institut National de la Recherche Agronomique (INRA)-École normale supérieure - Lyon (ENS Lyon)
- Subjects
0106 biological sciences ,0301 basic medicine ,Field (physics) ,[SDV]Life Sciences [q-bio] ,Biophysics ,FOS: Physical sciences ,morphogenesis ,Geometry ,Conformal map ,Models, Biological ,01 natural sciences ,03 medical and health sciences ,Structural Biology ,Leaf blade ,tissue dynamics ,[SDV.BV]Life Sciences [q-bio]/Vegetal Biology ,Physics - Biological Physics ,Tissues and Organs (q-bio.TO) ,Molecular Biology ,Mathematics ,Dynamics (mechanics) ,Isotropy ,Quantitative Biology - Tissues and Organs ,Cell Biology ,Plant Leaves ,030104 developmental biology ,Transformation (function) ,Biological Physics (physics.bio-ph) ,FOS: Biological sciences ,Displacement field ,plant development ,conformal map ,010606 plant biology & botany - Abstract
Growth pattern dynamics lie at the heart of morphogenesis. Here, we investigate the growth of plant leaves. We compute the conformal transformation that maps the contour of a leaf at a given stage onto the contour of the same leaf at a later stage. Based on the mapping we predict the local displacement field in the leaf blade and find it to agree with the experimentally measured displacement field to 92%. This approach is applicable to any two-dimensional system with locally isotropic growth, enabling the deduction of the whole growth field just from observation of the tissue contour., 8 pages, 4 figures
- Published
- 2016
13. Geometry and Mechanics in the Opening of Chiral Seed Pods
- Author
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Eran Sharon, Raz Kupferman, Efi Efrati, and Shahaf Armon
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Multidisciplinary ,Materials science ,Latex ,Intrinsic curvature ,Mathematical Concepts ,02 engineering and technology ,STRIPS ,Mechanics ,010402 general chemistry ,021001 nanoscience & nanotechnology ,Models, Biological ,01 natural sciences ,Elasticity ,0104 chemical sciences ,law.invention ,Intrinsic metric ,Physical Phenomena ,Point of delivery ,Biomimetic Materials ,law ,Bauhinia ,Seeds ,Elasticity (economics) ,0210 nano-technology ,Alpha helix - Abstract
We studied the mechanical process of seed pods opening in Bauhinia variegate and found a chirality-creating mechanism, which turns an initially flat pod valve into a helix. We studied configurations of strips cut from pod valve tissue and from composite elastic materials that mimic its structure. The experiments reveal various helical configurations with sharp morphological transitions between them. Using the mathematical framework of "incompatible elasticity," we modeled the pod as a thin strip with a flat intrinsic metric and a saddle-like intrinsic curvature. Our theoretical analysis quantitatively predicts all observed configurations, thus linking the pod's microscopic structure and macroscopic conformation. We suggest that this type of incompatible strip is likely to play a role in the self-assembly of chiral macromolecules and could be used for the engineering of synthetic self-shaping devices.
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- 2011
14. Shape selection in chiral ribbons: from seed pods to supramolecular assemblies
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Michael Moshe, Hillel Aharoni, Eran Sharon, and Shahaf Armon
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Materials science ,Geometrical frustration ,Supramolecular chemistry ,02 engineering and technology ,General Chemistry ,021001 nanoscience & nanotechnology ,Condensed Matter Physics ,01 natural sciences ,Crystallography ,Chemical physics ,0103 physical sciences ,Ribbon ,Elasticity (economics) ,010306 general physics ,0210 nano-technology ,Dimensionless quantity - Abstract
We provide a geometric-mechanical model for calculating equilibrium configurations of chemical systems that self-assemble into chiral ribbon structures. The model is based on incompatible elasticity and uses dimensionless parameters to determine the equilibrium configurations. As such, it provides universal curves for the shape and energy of self-assembled ribbons. We provide quantitative predictions for the twisted-to-helical transition, which was observed experimentally in many systems, and demonstrate it with synthetic ribbons made of responsive gels. In addition, we predict the bi-stability of wide ribbons and also show how geometrical frustration can cause arrest of ribbon widening. Finally, we show that the model's predictions provide explanations for experimental observations in different chemical systems.
- Published
- 2014
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