206 results on '"Shanshan Ding"'
Search Results
2. Sparse decoupling imaging network for wideband two‐dimensional MIMO radar imaging using model‐assisted and attention mechanism
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Shanshan Ding, Zhijin Wen, Yang Liu, and Nana Fan
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learning (artificial intelligence) ,radar signal processing ,radar imaging ,Electrical engineering. Electronics. Nuclear engineering ,TK1-9971 - Abstract
Abstract The problem of sparse decoupling radar imaging methods based on deep learning is researched. An improved model‐driven learning imaging network with a complex‐valued convolution block attention module plugged into each sub‐network is proposed. This method can solve the high sidelobe and coupling problem in sparse wideband Multiple‐Input Multiple‐Output (MIMO) radar. In addition, it can better focus on the target area and capture target information to boost model representation power. Experimental results verify the validity of the proposed method.
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- 2024
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3. Perovskite quantum dots: What’s next?
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Huiyuan Cheng, Shanshan Ding, Mengmeng Hao, Lianzhou Wang, and Julian A. Steele
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Perovskite quantum dots ,Synthesis ,Post-treatment ,Applications ,Solar cells ,Light-emitting diodes ,Energy industries. Energy policy. Fuel trade ,HD9502-9502.5 ,Renewable energy sources ,TJ807-830 - Abstract
Zero-dimensional metal halide perovskite quantum dots (PQDs) display distinct chemical, physical, electrical, and optical properties compared to their bulk counterparts. These unique characteristics make PQDs highly promising materials for a broad range of applications spanning solar cells and light-emitting diodes (LEDs), to lasers and quantum technologies. Despite the recent advances, the translations of PQDs into commercially viable materials are hindered by several drawbacks; for example, an unclear understanding of their formation mechanism(s), the complex chemistry and dynamic instabilities at the PQDs surface, and the inefficient or unbalanced charge transportation in PQDs-based devices. In this review, we present an in-depth analysis of the current progress and challenges in the field of PQDs and their applications. Additionally, we offer insights into potential future research directions in this exciting area of study.
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- 2024
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4. A Novel Non-Invasive Murine Model of Neonatal Hypoxic-Ischemic Encephalopathy Demonstrates Developmental Delay and Motor Deficits with Activation of Inflammatory Pathways in Monocytes
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Elise A. Lemanski, Bailey A. Collins, Andrew T. Ebenezer, Sudha Anilkumar, Victoria A. Langdon, Qi Zheng, Shanshan Ding, Karl Royden Franke, Jaclyn M. Schwarz, and Elizabeth C. Wright-Jin
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hypoxic-ischemic encephalopathy ,maternal immune activation ,motor ,development ,microglia ,macrophages ,Cytology ,QH573-671 - Abstract
Neonatal hypoxic-ischemic encephalopathy (HIE) occurs in 1.5 per 1000 live births, leaving affected children with long-term motor and cognitive deficits. Few animal models of HIE incorporate maternal immune activation (MIA) despite the significant risk MIA poses to HIE incidence and diagnosis. Our non-invasive model of HIE pairs late gestation MIA with postnatal hypoxia. HIE pups exhibited a trend toward smaller overall brain size and delays in the ontogeny of several developmental milestones. In adulthood, HIE animals had reduced strength and gait deficits, but no difference in speed. Surprisingly, HIE animals performed better on the rotarod, an assessment of motor coordination. There was significant upregulation of inflammatory genes in microglia 24 h after hypoxia. Single-cell RNA sequencing (scRNAseq) revealed two microglia subclusters of interest following HIE. Pseudobulk analysis revealed increased microglia motility gene expression and upregulation of epigenetic machinery and neurodevelopmental genes in macrophages following HIE. No sex differences were found in any measures. These results support a two-hit noninvasive model pairing MIA and hypoxia as a model for HIE in humans. This model results in a milder phenotype compared to established HIE models; however, HIE is a clinically heterogeneous injury resulting in a variety of outcomes in humans. The pathways identified in our model of HIE may reveal novel targets for therapy for neonates with HIE.
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- 2024
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5. Correlation between NGS panel-based mutation results and clinical information in colorectal cancer patients
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Bo Cheng, Lin Xu, Yunzhi Zhang, Huimin Yang, Shan Liu, Shanshan Ding, Huan Zhao, Yi Sui, Chan Wang, Lanju Quan, Jinhong Liu, Ye Liu, Hongming Wang, Zhaoqing Zheng, Xizhao Wu, Jing Guo, Zhaohong Wen, Ruya Zhang, Fei Wang, Hongmei Liu, and Suozhu Sun
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Colorectal cancer ,Next-generation sequencing ,gene mutation ,microsatellite instability ,Molecular targeted therapy ,Science (General) ,Q1-390 ,Social sciences (General) ,H1-99 - Abstract
Early mutation identification guides patients with colorectal cancer (CRC) toward targeted therapies. In the present study, 414 patients with CRC were enrolled, and amplicon-based targeted next-generation sequencing (NGS) was then performed to detect genomic alterations within the 73 cancer-related genes in the OncoAim panel. The overall mutation rate was 91.5 % (379/414). Gene mutations were detected in 38/73 genes tested. The most frequently mutated genes were TP53 (60.9 %), KRAS (46.6 %), APC (30.4 %), PIK3CA (15.9 %), FBXW7 (8.2 %), SMAD4 (6.8 %), BRAF (6.5 %), and NRAS (3.9 %). Compared with the wild type, TP53 mutations were associated with low microsatellite instability/microsatellite stability (MSI-L/MSS) (P = 0.007), tumor location (P = 0.043), and histological grade (P = 0.0009); KRAS mutations were associated with female gender (P = 0.026), distant metastasis (P = 0.023), TNM stage (P = 0.013), and histological grade (P = 0.004); APC mutations were associated with patients
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- 2024
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6. Multi-Dimensional Landscape Connectivity Index for Prioritizing Forest Cover Change Scenarios: A Case Study of Southeast China
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Zhu He, Zhihui Lin, Qianle Xu, Shanshan Ding, Xiaochun Bao, Xuefei Li, Xisheng Hu, and Jian Li
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multi-dimensional landscape connectivity index ,shared socio-economic pathways (SSPs) ,forest cover change ,patch-generating land use simulation (PLUS) ,southeast China ,Plant ecology ,QK900-989 - Abstract
Predicting forest cover change (FCC) and screening development scenarios are crucial for ecological resilience. However, quantitative evaluations of prioritizing forest change scenarios are limited. Here, we took five shared socio-economic pathways (SSPs) representing potential global changes, namely SSP1: sustainability, SSP2: middle of the road, SSP3: regional rivalry, SSP4: inequality, and SSP5: fossil-fueled development, which were constructed by integrated assessment and climate models. We modeled them with the patch-generating land use simulation (PLUS) and constructed a multi-dimensional landscape connectivity index (MLCI) employing forest landscape connectivity (FLC) indices to assess forest development in Fujian Province, Southeast China. The MLCI visualized by radar charts was based on five metrics, including forest patch size (class area (CA), number (patch density (PD), isolation (landscape division index (DIVISION), aggregation (mean nearest-neighbor index (ENN_MN), and connectance index, (CONNECT). The results indicate that FC will remain above 61.4% until 2030, with growth observed in SSP1 and SSP4. Particularly, FC in SSP4 substantially increased, converted from cropland (1140.809 km2) and grassland (645.741 km2). SSP4 has the largest MLCI values and demonstrates significant enhancements in forest landscape integrity, with CA, ENN_MN and CONNECT increasing greatly. Our study offers valuable approaches to and insights into forest protection and restoration.
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- 2024
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7. Exciton interacting with a moiré lattice: Polarons, strings, and optical probing of spin correlations
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Aleksi Julku, Shanshan Ding, and Georg M. Bruun
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Physics ,QC1-999 - Abstract
The ability to create and stack different atomically thin transition metal dichacogenide (TMD) layers on top of each other has opened up a rich playground for exploring new and interesting two-dimensional (2D) quantum phases. As a consequence of this remarkable development, there is presently a need for new sensors to probe these 2D layers, since conventional techniques for bulk materials such as x-ray and neutron scattering are inefficient. Here, we develop a general theory for how an exciton in a TMD monolayer couples to spin and charge correlations in an adjacent moiré lattice created by a TMD bilayer. Virtual tunneling of charge carriers, assumed for concreteness to be holes, between the moiré lattice and the monolayer combined with the presence of bound hole-exciton states, i.e., trions, give rise to an effective interaction between the moiré holes and the exciton. In addition to the Umklapp scattering, we show that this interaction is spin-dependent and therefore couples the exciton to the spin correlations of the moiré holes, which may be in- as well as out-of-plane. We then use our theory to examine two specific examples where the moiré holes form in-plane ferromagnetic or antiferromagnetic order. In both cases, the exciton creates spin waves in the moiré lattice, which we analyze by using a self-consistent Born approximation that includes such processes to infinite order. We show that the competition between magnetic order and exciton motion leads to the formation of a well-defined quasiparticle consisting of the exciton surrounded by a cloud of magnetic frustration in the moiré lattice sites below. For the antiferromagnet, we furthermore demonstrate the presence of the elusive geometric string excitations and discuss how they can be observed via their smoking gun energy dependence on the spin-spin coupling, which can be tuned by varying the twist angle of the moiré bilayer. All these phenomena have clear signatures in the exciton spectrum, and as such our results illustrate that excitons are promising quantum probes providing optical access to the spin correlations of new phases predicted to exist in TMD materials.
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- 2024
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8. The mutual interactions among Helicobacter pylori, chronic gastritis, and the gut microbiota: a population-based study in Jinjiang, Fujian
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Hanjing Li, Yingying Hu, Yanyu Huang, Shanshan Ding, Long Zhu, Xinghui Li, Meng Lan, Weirong Huang, and Xuejuan Lin
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chronic atrophic gastritis ,gut microbiota ,Helicobacter pylori ,gastritis ,gastric microenvironment ,Microbiology ,QR1-502 - Abstract
ObjectivesHelicobacter pylori (H. pylori) is a type of bacteria that infects the stomach lining, and it is a major cause of chronic gastritis (CG). H. pylori infection can influence the composition of the gastric microbiota. Additionally, alterations in the gut microbiome have been associated with various health conditions, including gastrointestinal disorders. The dysbiosis in gut microbiota of human is associated with the decreased secretion of gastric acid. Chronic atrophic gastritis (CAG) and H. pylori infection are also causes of reduced gastric acid secretion. However, the specific details of how H. pylori infection and CG, especially for CAG, influence the gut microbiome can vary and are still an area of ongoing investigation. The incidence of CAG and infection rate of H. pylori has obvious regional characteristics, and Fujian Province in China is a high incidence area of CAG as well as H. pylori infection. We aimed to characterize the microbial changes and find potential diagnostic markers associated with infection of H. pylori as well as CG of subjects in Jinjiang City, Fujian Province, China.ParticipantsEnrollment involved sequencing the 16S rRNA gene in fecal samples from 176 cases, adhering to stringent inclusion and exclusion criteria. For our study, we included healthy volunteers (Normal), individuals with chronic non-atrophic gastritis (CNAG), and those with CAG from Fujian, China. The aim was to assess gut microbiome dysbiosis based on various histopathological features. QIIME and LEfSe analyses were performed. There were 176 cases, comprising 126 individuals who tested negative for H. pylori and 50 who tested positive defined by C14 urea breath tests and histopathological findings in biopsies obtained through endoscopy. CAG was also staged by applying OLGIM system.ResultsWhen merging the outcomes from 16S rRNA gene sequencing results, there were no notable variations in alpha diversity among the following groups: Normal, CNAG, and CAG; OLGIM I and OLGIM II; and H. pylori positive [Hp (+)] and H. pylori negative [Hp (–)] groups. Beta diversity among different groups show significant separation through the NMDS diagrams. LEfSe analyses confirmed 2, 3, and 6 bacterial species were in abundance in the Normal, CNAG, and CAG groups; 26 and 2 species in the OLGIM I and OLGIM II group; 22 significant phylotypes were identified in Hp (+) and Hp (–) group, 21 and 1, respectively; 9 bacterial species exhibited significant differences between individuals with CG who were Hp (+) and those who were Hp (–).ConclusionThe study uncovered notable distinctions in the characteristics of gut microbiota among the following groups: Normal, CNAG, and CAG; OLGIM I and OLGIM II; and Hp (+) and Hp (–) groups. Through the analysis of H. pylori infection in CNAG and CAG groups, we found the gut microbiota characteristics of different group show significant difference because of H. pylori infection. Several bacterial genera could potentially serve as diagnostic markers for H. pylori infection and the progression of CG.
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- 2024
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9. Building a multistate model from electronic health records data for modeling long-term diabetes complications
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Riza C. Li, Shanshan Ding, Kevin Ndura, Vishal Patel, and Claudine Jurkovitz
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Diabetes ,electronic health records ,multistate modeling ,diabetes complications ,transition probability ,Medicine - Abstract
Abstract Objective: The progression of long-term diabetes complications has led to a decreased quality of life. Our objective was to evaluate the adverse outcomes associated with diabetes based on a patient’s clinical profile by utilizing a multistate modeling approach. Methods: This was a retrospective study of diabetes patients seen in primary care practices from 2013 to 2017. We implemented a five-state model to examine the progression of patients transitioning from one complication to having multiple complications. Our model incorporated high dimensional covariates from multisource data to investigate the possible effects of different types of factors that are associated with the progression of diabetes. Results: The cohort consisted of 10,596 patients diagnosed with diabetes and no previous complications associated with the disease. Most of the patients in our study were female, White, and had type 2 diabetes. During our study period, 5928 did not develop complications, 3323 developed microvascular complications, 1313 developed macrovascular complications, and 1129 developed both micro- and macrovascular complications. From our model, we determined that patients had a 0.1334 [0.1284, .1386] rate of developing a microvascular complication compared to 0.0508 [0.0479, .0540] rate of developing a macrovascular complication. The area deprivation index score we incorporated as a proxy for socioeconomic information indicated that patients who reside in more disadvantaged areas have a higher rate of developing a complication compared to those who reside in least disadvantaged areas. Conclusions: Our work demonstrates how a multistate modeling framework is a comprehensive approach to analyzing the progression of long-term complications associated with diabetes.
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- 2024
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10. Tumor educated platelet: the novel BioSource for cancer detection
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Shanshan Ding, Xiaohan Dong, and Xingguo Song
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Tumor educated platelet ,Small nuclear RNA ,Tumor biomarker ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 ,Cytology ,QH573-671 - Abstract
Abstract Platelets, involved in the whole process of tumorigenesis and development, constantly absorb and enrich tumor-specific substances in the circulation during their life span, thus called “Tumor Educated Platelets” (TEPs). The alterations of platelet mRNA profiles have been identified as tumor markers due to the regulatory mechanism of post-transcriptional splicing. Small nuclear RNAs (SnRNAs), the important spliceosome components in platelets, dominate platelet RNA splicing and regulate the splicing intensity of pre-mRNA. Endogenous variation at the snRNA levels leads to widespread differences in alternative splicing, thereby driving the development and progression of neoplastic diseases. This review systematically expounds the bidirectional tumor-platelets interactions, especially the tumor induced alternative splicing in TEP, and further explores whether molecules related to alternative splicing such as snRNAs can serve as novel biomarkers for cancer diagnostics.
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- 2023
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11. Diagnostic value of inflammatory indicators for surgical site infection in patients with breast cancer
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Dongmei Li, Shanshan Ding, Jie Li, Xianglu Liao, Kun Ru, Lisheng Liu, and Wenjing Shang
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SSI ,inflammatory indicators ,Staphylococcus aureus ,antibiotic resistance ,breast cancer ,diagnostic value ,Microbiology ,QR1-502 - Abstract
BackgroundBreast cancer is the most commonly diagnostic cancer in women worldwide. The main treatment for these patients is surgery. However, there is a high incidence of surgical site infection (SSI) in breast cancer patients. The aim of this study was to identify effective infection-related diagnostic markers for timely diagnosis and treatment of SSI.MethodsThis retrospective study included 263 breast cancer patients who were treated between July 2018 and March 2023 at the Shandong Cancer Hospital and Institute. We analyzed differences between the SSI group and control group and differences before and during infection in the SSI group. Finally, we tested the distribution of pathogenic microorganisms and their susceptibility to antibiotics.ResultsCompared with preoperative inflammatory indicators, white blood cells (WBC), neutrophils (NEU), absolute neutrophil count to the absolute lymphocyte count (NLR), D2 polymers (D-Dimer) and fibrinogen (FIB) were significantly increased, while lymphocytes (LYM), albumin (ALB) and prealbumin (PA) were significantly decreased in the SSI group. Compared with uninfected patients, WBC, NEU, NLR and FIB were significantly increased, ALB and PA were significantly decreased in SSI patients, while LYM and D-Dimer did not differ significantly. The distribution of infection bacteria in SSI patients showed that the proportion of patients with Staphylococcus aureus infection was as high as 70.41%; of those patients, 19.33% had methicillin-resistant Staphylococcus aureus (MRSA) infection. The area under the curves (AUCs) of the receiver operating curves (ROCs) for WBC, NEU, NLR, FIB, ALB and PA were 0.807, 0.811, 0.730, 0.705, 0.663 and 0.796, respectively. The AUCs for other inflammatory indicators were not statistically significant. There was no significant difference in antibiotic resistance for Staphylococcus aureus when compared to that of gram-positive bacteria. The resistance of gram-positive bacteria to ceftriaxone (CRO), cefoxitin (FOX), chloramphenicol (CHL), minocycline (MNO) and tetracycline (TCY) was lower than that of gram-negative bacteria, while the resistance to gentamicin (GEN) was higher.ConclusionThis study demonstrated that WBC, NEU, NLR, FIB and PA have good predictive value for identifying patients at risk of SSI. The cut-off values of inflammatory indicators can be helpful in the prevention and diagnosis of SSI.
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- 2023
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12. Freeze-thaw cycles alter the growth sprouting strategy of wetland plants by promoting denitrification
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Shanshan Ding, Yuanchun Zou, and Xiaofei Yu
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Geology ,QE1-996.5 ,Environmental sciences ,GE1-350 - Abstract
Sprouting and early growth of plants in wetlands can be inhibited by freeze-thaw cycles via denitrification and reduction of soil nitrogen, according to a temperature-controlled experiment in the Momoge wetland in China.
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- 2023
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13. ESRTMDet: An End-to-End Super-Resolution Enhanced Real-Time Rotated Object Detector for Degraded Aerial Images
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Fei Liu, Renwen Chen, Junyi Zhang, Shanshan Ding, Hao Liu, Shaofei Ma, and Kailing Xing
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Aerial image ,deep learning ,remote sensing ,rotated object detection (ROD) ,small object detection (SOD) ,superresolution (SR) ,Ocean engineering ,TC1501-1800 ,Geophysics. Cosmic physics ,QC801-809 - Abstract
The degradation of image resolution reduces the detection performance in aerial imagery because it generates a large number of small objects, and accurately detecting these small objects remains a challenge. Existing methods mostly use a superresolution (SR) model to first obtain the SR image of the low-resolution degraded image ($I^{\text{LR}}$) and then use this image as the input of the object detection (OD) network to solve this problem. However, this architecture that involves executing a complex SR network before the detector is time-consuming and makes it hard to achieve real-time model inference. To address this challenge, we propose a simple and effective rotated small OD method, named end-to-end superresolution enhanced real-time rotated object detector (ESRTMDet). First, we design a lightweight embedded feature map superresolution module (ESRM) embedded in the detection model to enhance and amplify the backbone output features, making the detection heads detect small objects more easily. Furthermore, we train a parallel SR network branch (PSRB) simultaneously that uses the backbone feature to restore a high-resolution image. Through our proposed feature alignment loss and feature affinity layer, our PSRB effectively guides the feature map enhancement of ESRM. Finally, through end-to-end joint optimization of the detector and PSRB, the detection performance on $I^{\text{LR}}$ is significantly improved. Extensive experiments over DOTA and UCAS-AOD demonstrate that our method can achieve state-of-the-art results. In addition, we discard our PSRB and use $I^{\text{LR}}$ as the input during inference, reducing the inference time-consuming of our model. Therefore, our ESRTMDet-X not only achieves 77.11% mean of average precision on the degraded DOTA dataset, but also achieves an amazing inference speed of 337 FPS, thus obtaining the best speed–accuracy tradeoff.
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- 2023
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14. A highly sensitive and wide-range pressure sensor based on orientated and strengthened TPU nanofiber membranes fabricated by a conjugated electrospinning technology
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Xu Jin, Zhijun Xu, Bin Wang, Shanshan Ding, Jiayu Ma, Meng Cui, Chuanchun Wang, Yuping Jiang, Jiali Liu, and Xiuqin Zhang
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Flexible capacitive pressure sensor ,Conjugated electrospinning ,Nanofiber membrane ,PANI ,Chemical engineering ,TP155-156 - Abstract
Flexible capacitive pressure sensors as one of the crucial sensing components have aroused widespread concern because of their vital role in development of wearable artificial devices, healthcare biomonitoring and human-machine interface. However, there has been a considerable challenge to successfully fabricate them with a tradeoff between high sensitivity and wide sensing range by low-cost and convenient manufacturing methods. Herein, the orientated thermoplastic polyurethane elastomer rubber nanofiber membranes (TPU-O NMs) were prepared via conjugated electrospinning to build a dielectric layer for the flexible capacitive wide-range pressure sensors with high sensitivity. In addition, polyaniline (PANI) was in situ polymerized on the TPU-O NMs as flexible electrodes to maintain the conductive pathway, flexibility, and breathability of the sensors. The TPU@PANI NMs form a bamboo-raft-like microstructure between the aligned fibers under pressure, resulting in a significant increase in sensitivity and working range. Furthermore, the conductive TPU@PANI NMs can be stretched to 1600% without fracture. The assembled sensor has a high sensitivity of 31.73 kPa−1 and a fast response/recovery time of 96 ms. Meantime, it also exhibits a minimum detection limit of 1 Pa, an excellent stability of 10,000 cycles, and a good linearity in a broad working age (1 Pa∼122.5 kPa). Finally, the capacitive pressure sensor was successfully applied for full-range detection of human motions, such as finger bending, joint bending, and even boxing movements. Hence this highly sensitive and wide-range pressure sensor can be a promising candidate for healthcare monitoring, motion recognition, and wearable circuitry in artificial intelligence.
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- 2023
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15. Three‐dimensional decoupling imaging method for wideband two‐dimensional multiple‐input‐multiple‐output radar
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Shanshan Ding, Ningning Tong, Weike Feng, Pengcheng Wan, and Yongshun Zhang
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radar imaging ,radar receivers ,Telecommunication ,TK5101-6720 - Abstract
Abstract Wideband two‐dimensional multiple input multiple output (MIMO) radar can be used for target three‐dimensional (3‐D) imaging. As the echo of wideband MIMO radar is derived from both time and spatial sampling, the time‐frequency coupling is contained, resulting in imaging defocussing. To solve this problem, a time‐frequency decoupling algorithm based on matrix enhancement and matrix pencil (MEMP) is proposed to achieve high‐resolution 3‐D imaging. By combining the enhanced matrix constructed via MEMP with the modern spectral estimation theory, the time‐frequency coupling term is regarded as a space rotation factor and is eliminated in the process of target position estimation. Simulation results show that the proposed algorithm can reduce the negative influence of time‐frequency coupling and improve the imaging accuracy of wideband two‐dimensional MIMO radar.
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- 2022
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16. Integrated Multi-Omics Analyses Reveal That Autophagy-Mediated Cellular Metabolism Is Required for the Initiation of Pollen Germination
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Xuemei Zhou, Qiuyu Zhang, Yuliang Zhao, Shanshan Ding, and Guang-Hui Yu
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autophagy ,multi-omics analyses ,metabolome ,transcriptome ,pollen germination ,tobacco ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
Autophagy is an evolutionarily conserved mechanism for degrading and recycling various cellular components, functioning in both normal development and stress conditions. This process is tightly regulated by a set of autophagy-related (ATG) proteins, including ATG2 in the ATG9 cycling system and ATG5 in the ATG12 conjugation system. Our recent research demonstrated that autophagy-mediated compartmental cytoplasmic deletion is essential for pollen germination. However, the precise mechanisms through which autophagy regulates pollen germination, ensuring its fertility, remain largely unknown. Here, we applied multi-omics analyses, including transcriptomic and metabolomic approaches, to investigate the downstream pathways of autophagy in the process of pollen germination. Although ATG2 and ATG5 play similar roles in regulating pollen germination, high-throughput transcriptomic analysis reveals that silencing ATG5 has a greater impact on the transcriptome than silencing ATG2. Cross-comparisons of transcriptome and proteome analysis reveal that gene expression at the mRNA level and protein level is differentially affected by autophagy. Furthermore, high-throughput metabolomics analysis demonstrates that pathways related to amino acid metabolism and aminoacyl-tRNA biosynthesis were affected by both ATG2 and ATG5 silencing. Collectively, our multi-omics analyses reveal the central role of autophagy in cellular metabolism, which is critical for initiating pollen germination and ensuring pollen fertility.
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- 2023
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17. In Situ Bonding Regulation of Surface Ligands for Efficient and Stable FAPbI3 Quantum Dot Solar Cells
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Shanshan Ding, Mengmeng Hao, Changkui Fu, Tongen Lin, Ardeshir Baktash, Peng Chen, Dongxu He, Chengxi Zhang, Weijian Chen, Andrew K. Whittaker, Yang Bai, and Lianzhou Wang
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perovskites ,photovoltaic performance ,proton exchange control ,quantum dots ,stability ,surface ligands ,Science - Abstract
Abstract Quantum dots (QDs) of formamidinium lead triiodide (FAPbI3) perovskite hold great potential, outperforming their inorganic counterparts in terms of phase stability and carrier lifetime, for high‐performance solar cells. However, the highly dynamic nature of FAPbI3 QDs, which mainly originates from the proton exchange between oleic acid and oleylamine (OAm) surface ligands, is a key hurdle that impedes the fabrication of high‐efficiency solar cells. To tackle such an issue, here, protonated‐OAm in situ to strengthen the ligand binding at the surface of FAPbI3 QDs, which can effectively suppress the defect formation during QD synthesis and purification processes is selectively introduced. In addition, by forming a halide‐rich surface environment, the ligand density in a broader range for FAPbI3 QDs without compromising their structural integrity, which significantly improves their optoelectronic properties can be modulated. As a result, the power conversion efficiency of FAPbI3 QD solar cells (QDSCs) is enhanced from 7.4% to 13.8%, a record for FAPbI3 QDSCs. Furthermore, the suppressed proton exchange and reduced surface defects in FAPbI3 QDs also enhance the stability of QDSCs, which retain 80% of the initial efficiency upon exposure to ambient air for 3000 hours.
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- 2022
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18. Non-classical phenotypes of mismatch repair deficiency and microsatellite instability in primary and metastatic tumors at different sites in Lynch syndrome
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Zhiyu Li, Bo Cheng, Shan Liu, Shanshan Ding, Jinhong Liu, Lanju Quan, Yanjiao Hao, Lin Xu, Huan Zhao, Jing Guo, and Suozhu Sun
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microsatellite instability ,colorectal cancer ,Lynch syndrome ,heterogeneity ,mismatch repair protein ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
BackgroundLynch syndrome is a genetic disease characterized by abnormal DNA replication caused by germline variation in the mismatch repair (MMR) gene. There are rare non-classical phenotypes with loss of MMR protein expression and inconsistent microsatellite stability (MSS) in Lynch syndrome-related colorectal cancers. However, the difference between microsatellite instability (MSI) of extraintestinal tumors in a patient with Lynch syndrome has been closely studied. Herein, we reported the non-classical phenotypes of mismatch repair deficiency (dMMR) and MSI in four cases of Lynch syndrome in patients with colorectal cancer and other primary and metastatic tumors.MethodsA retrospective analysis was conducted on four patients diagnosed with Lynch syndrome between 2018 and 2022 in the Department of Pathology of the Rocket Forces Specialized Medical Center. A one-step immunohistochemical (IHC) assay was employed to detect loss in the expression of Lynch syndrome-associated MMR proteins (MLH1, PMS2, MSH2, and MSH6). MSI detection was performed in both primary and metastatic tumors at different sites in the four patients using NCI 2B3D (BAT25, BAT26, D2S123, D17S250, and D5S346) and single nucleotide site (BAT25, BAT26, NR21, NR24, NR27, and MONO27) methods. In addition, related MMR gene germline variation, somatic mutations, and MLH1 gene promoter methylation were analyzed using next-generation sequencing and TaqMan probe-based methylation-specific polymerase chain reaction (MethyLight).ResultsTwo of the four patients were heterozygous for MSH6 germline pathogenic variation, and the other two were heterozygous for MSH2 germline pathogenic variation. In all cases, IHC detection of protein expression of the MMR gene with germline variation was negative in all primary and metastatic tumors; non-classical phenotypes of dMMR and MSI were present between primary and metastatic tumors at different sites. dMMR in Lynch colorectal cancer demonstrated high MSI, whereas MSI in primary and metastatic tumors outside the intestine mostly exhibited MSS or low MSI.ConclusionsThe non-classical dMMR and MSI phenotype are mostly observed in Lynch syndrome, even in the context of MMR protein expression loss. Extraintestinal tumors infrequently present with a high degree of MSI and often exhibit a stable or low degree of MSI.
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- 2022
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19. Polarons and bipolarons in a two-dimensional square lattice
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Shanshan Ding, G. A. Domínguez-Castro, Aleksi Julku, Arturo Camacho-Guardian, Georg M. Bruun
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Physics ,QC1-999 - Abstract
Quasiparticles and their interactions are a key part of our understanding of quantum many-body systems. Quantum simulation experiments with cold atoms have in recent years advanced our understanding of isolated quasiparticles, but so far they have provided limited information regarding their interactions and possible bound states. Here, we show how exploring mobile impurities immersed in a Bose-Einstein condensate (BEC) in a two-dimensional lattice can address this problem. First, the spectral properties of individual impurities are examined, and in addition to the attractive and repulsive polarons known from continuum gases, we identify a new kind of quasiparticle stable for repulsive boson-impurity interactions. The spatial properties of polarons are calculated showing that there is an increased density of bosons at the site of the impurity both for repulsive and attractive interactions. We then derive an effective Schrödinger equation describing two polarons interacting via the exchange of density oscillations in the BEC, which takes into account strong impurity-boson two-body correlations. Using this, we show that the attractive nature of the effective interaction between two polarons combined with the two-dimensionality of the lattice leads to the formation of bound states - i.e. bipolarons. The wave functions of the bipolarons are examined showing that the ground state is symmetric under particle exchange and therefore relevant for bosonic impurities, whereas the first excited state is doubly degenerate and odd under particle exchange making it relevant for fermionic impurities. Our results show that quantum gas microscopy in optical lattices is a promising platform to explore the spatial properties of polarons as well as to finally observe the elusive bipolarons.
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- 2023
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20. Vegetated Steel Slag Substrate Constructed Wetlands can Achieve High Efficiency Simultaneous Nitrogen and Phosphorus Removal
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Jingyao Zhang, Yuanchun Zou, Xiaofei Yu, Shanshan Ding, Jiawen Yan, and Yongen Min
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steel slag ,planting ,constructed wetlands ,nitrogen removal ,phosphorus removal ,Environmental sciences ,GE1-350 - Abstract
Steel slag substrate constructed wetlands (SSCWs) can effectively remove phosphorus (P) from sewage through Ca-P precipitation and adsorption. Nonetheless, the disadvantages of a high pH value of the effluent and low nitrogen (N) removal efficiency limit the practical application of SSCWs. To improve these shortcomings, plant cultivation and combining steel slag with other substrate materials have been applied in SSCWs. However, related studies have not obtained a unanimous consensus elucidating such improvements. To accurately evaluate improvements, we statistically analyzed the experimental data reported in 27 related papers and found that combining steel slag with other substrate materials in SSCWs significantly increased the removal amount of total nitrogen (TN) (51.58 mg TN/L) and ammonium nitrogen (NH4+-N) (74.15 mg NH4+-N/L) but reduced the removal amount of total phosphorus (TP) (7.76 mg TP/L). In these combined substrate SSCWs, plant cultivation could compensate for the decline in TP removal amount and improve upon the simultaneous removal of N and P (6.02 mg TP/L, 62.18 mg TN/L, and 69.16 mg NH4+-N/L). Moreover, compared with vertical flow SSCWs, horizontal flow enables plant-cultivated and combined substrate SSCWs to achieve a higher TP removal capacity (6.38 mg TP/L). In addition, operational parameters, including temperature, hydraulic retention time (HRT), pH value, and influent concentration, significantly affected the N and P removal capacity of SSCWs. Our research results provide a theoretical reference for the design and operation of SSCWs for efficient N and P removal.
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- 2022
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21. Tumor‐educated platelet SNORD55 as a potential biomarker for the early diagnosis of non‐small cell lung cancer
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Xiaohan Dong, Xingguo Song, Shanshan Ding, Miao Yu, Xiaoling Shang, Kangyu Wang, Minghui Chang, Li Xie, and Xianrang Song
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biomarker ,diagnosis ,SNORD55 ,snoRNA ,TEP ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Abstract Background Despite the emerging insights into many snoRNAs (small nucleolar RNAs) which are detectable in body fluids and serve as noninvasive biomarkers, few studies have previously discussed the role of snoRNAs in tumor‐educated platelets (TEPs). Herein, we systematically estimated dysregulation of snoRNAs in non‐small cell lung cancer (NSCLC) and clarified the biomarker potential of SNORD55 in platelets. Methods We compared expression of snoRNAs between NSCLC and normal tissues using SNORic datasets. Platelets were isolated from plasma using low‐speed centrifugation and subjected to quantitative polymerase chain reaction (qPCR) for SNORD55 detection. Results SNORD55 was significantly decreased in TEPs from NSCLC patients especially in early‐stage patients compared with healthy controls. Importantly, we validated that TEP SNORD55 was capable of acting as a promising biomarker for NSCLC. It exerted diagnostic performance for NSCLC diagnosis, possessing an AUC of 0.803, as well as for early NSCLC diagnosis, possessing an AUC of 0.784. Moreover, the combination of TEP SNORD55 and carcinoembryonic antigen (CEA) improved the diagnostic efficiency of cancer progression. In addition, TEP SNORD55 also potentially acts as a noninvasive early biomarker for lung adenocarcinoma (LUAD) and lung squamous cell carcinoma (LUSC) with favorable diagnostic efficiencies. Conclusions In summary, TEP SNORD55 could potentially serve as a noninvasive biomarker for NSCLC diagnosis and early diagnosis. Key points SNORD55 was significantly decreased in TEPs from NSCLC patients compared to healthy controls and acted as a novel biomarker for early NSCLC.
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- 2021
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22. Plasma miR‐1247‐5p, miR‐301b‐3p and miR‐105‐5p as potential biomarkers for early diagnosis of non‐small cell lung cancer
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Xiaohan Dong, Minghui Chang, Xingguo Song, Shanshan Ding, Li Xie, and Xianrang Song
- Subjects
Biomarkers ,miR‐105‐5p ,miR‐1247‐5p ,miR‐301b‐3p ,non‐small cell lung cancer ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Abstract Background Accumulating evidence shows that microRNAs are aberrantly expressed and exert essential roles in the tumorigenesis and tumor progression of non‐small cell lung cancer (NSCLC). Methods The plasma miRNAs from five healthy donors and four NSCLC patients were profiled by miRNA microarray. The differentially expressed miRNAs from 154 primary NSCLC patients and 146 healthy donors were subjected to RNA isolation and verified by quantitative PCR (qPCR). Results The miRNA microarray analysis revealed that 40 differential miRNAs between NSCLC patients and healthy donors were selected. We found that the plasma miR‐1247‐5p, miR‐301b‐3p and miR‐105‐5p levels of patients were significantly higher than those of healthy controls. The receiver operating characteristic curve (ROC) analyses revealed higher area under the ROC curve (AUC) values and higher sensitivity/specificity of carcinoembryonic antigen (CEA) in combination with miR‐1247‐5p, miR‐301b‐3p, or miR‐105‐5p were superior to that of CEA alone. Conclusions High miR‐1247‐5p, miR‐301b‐3p and miR‐105‐5p expression have been demonstrated to accelerate tumorigenesis, and these three miRNAs in plasma act as novel biomarkers for the early diagnosis of NSCLC patients. Key points Plasma miR‐1247‐5p, miR‐301b‐3p and miR‐105‐5p act as novel biomarkers for early NSCLC and NSCLC.
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- 2021
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23. SNORD63 and SNORD96A as the non-invasive diagnostic biomarkers for clear cell renal cell carcinoma
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Xiaoling Shang, Xingguo Song, Kangyu Wang, Miao Yu, Shanshan Ding, Xiaohan Dong, Li Xie, and Xianrang Song
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SNORD63 ,SNORD96A ,Urinary sediment ,ccRCC ,Diagnostic biomarkers ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 ,Cytology ,QH573-671 - Abstract
Abstract Background Increasing evidence has demonstrated that snoRNAs play crucial roles in tumorigenesis of various cancer types. However, researches on snoRNAs in ccRCC were very little. This study mainly aimed to validate the differential expression and the potential diagnostic value of SNORD63 and SNORD96A in ccRCC. Methods SnoRNAs expression was downloaded from the SNORic and TCGA database including 516 patients with ccRCC and 71 control cases. SNORD63 and SNORD96A expression were further detected in 54 tumor and adjacent FFPE ccRCC tissues, 55 plasma and 75 urinary sediment of ccRCC patients. Then, differential expression and diagnostic value of SNORD63 and SNORD96A were further calculated. Results SNORD63 and SNORD96A expression were significantly increased in ccRCC tissues compared with normal tissues from the TCGA database (both, P
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- 2021
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24. Problems lowering the study quality in traditional medicine, introspection from an example of meta-analysis of acupuncture
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Qiliang Chen, Qiong Wang, Shanshan Ding, Shunan Li, Yuanyuan Zhang, Shujiao Chen, Xuejuan Lin, Candong Li, and Tetsuya Asakawa
- Subjects
Study quality ,Traditional medicine ,Evidence-based medicine ,Meta-analysis ,Acupuncture ,Intracerebral hemorrhage ,Other systems of medicine ,RZ201-999 - Abstract
Abstract Background Most randomized controlled trials (RCTs) of traditional medicine (such as traditional Chinese medicine (TCM), psychotherapy or behavioral therapy, and dietary interventions, etc.) have reported that they could not provide convincing evidence to support the efficacy because of the low quality of their studies. Here, we aimed to determine the underlying problems of the study quality using standards of evidence-based medicine (EBM) to evaluate the efficacy of traditional medicine. Methods We conducted an example of meta-analysis to evaluate the efficacy of acupuncture, a classical treatment of TCM, for treatment of intracerebral hemorrhage (ICH). The quality of the included studies was evaluated by using a Jadad score. Results A total of 24 Chinese RCTs that enrolled 1815 patients with ICH were included. Although the results suggested that acupuncture had good efficacy for relief of neurological deficits and improvement of the activities of daily living despite the high heterogeneity of the included studies, the low quality of the included literature reduced the worthiness of the evidence. Two systematic problems (lack of blinding and allocation concealment and high heterogeneity) and one non-systematic problem (lack of reports on adverse events and follow-up) of the TCM studies were found in this illustrational meta-analysis. We believed that other interventions of traditional medicine also suffer from these problems. Conclusions Non-systematic problems can be improved by perfecting the experimental design, educating the researcher, and improving the reporting system. However, systematic problems are derived from the characteristics of traditional medicine that are difficult to be corrected. We propose that adoption of objective indexes might be a better solution to improve the systematic problems of traditional medicine. We summarized the problems and the underlying solutions, which may contribute to improve the study quality of systematic review in traditional medicine, strictly complying with the principles of EBM.
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- 2020
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25. Comparing the Effects of Short-Term Liuzijue Exercise and Core Stability Training on Balance Function in Patients Recovering From Stroke: A Pilot Randomized Controlled Trial
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Ying Zhang, Chen Wang, JianZhong Yang, Lei Qiao, Ying Xu, Long Yu, Jie Wang, Weidong Ni, Yan Wang, Yue Yao, ZhiJie Yong, and ShanShan Ding
- Subjects
short-term Liuzijue Qigong ,balance functions ,core stability training ,pilot randomized controlled trial ,stroke ,Neurology. Diseases of the nervous system ,RC346-429 - Abstract
AimsLiuzijue Qigong (LQG) exercise is a traditional Chinese exercise method in which breathing and pronunciation are combined with movement guidance. Breathing is closely related to balance, and LQG, as a special breathing exercise, can be applied to balance dysfunction after stroke. The purpose of this study was to observe the clinical effects of short-term LQG exercise on balance function in patients recovering from stroke.MethodsStroke patients were randomly divided into an Intervention Group (IG) (n = 80) and a Control Group (CG) (n = 80). The IG received conventional rehabilitation training plus LQG and the CG received conventional rehabilitation training plus Core Stability Training (CST). All patients received treatment once a day, 5 times a week for 2 weeks. The primary outcome was Berg Balance Scale (BBS). Secondary outcome measures were static standing and sitting balance with eyes open and closed, Fugl-Meyer Assessment (FMA), Maximum Phonation Time (MPT), Modified Barthel Index (MBI) and diaphragm thickness and mobility during quiet breath (QB) and deep breath (DB).ResultsCompared with the CG, the IG showed significant improvement in the BBS (10.55 ± 3.78 vs. 9.06 ± 4.50, P = 0.039), MPT (5.41 ± 4.70 vs. 5.89 ± 5.24, P = 0.001), MBI (12.88 ± 6.45 vs. 10.00 ± 4.84, P = 0.003), diaphragmatic mobility during QB (0.54 ± 0.73 vs. 0.33 ± 0.40, P = 0.01) and diaphragmatic mobility during DB (0.99 ± 1.32 vs. 0.52 ± 0.77, P = 0.003), Cop trajectory in the standing position with eyes open (−108.34 ± 108.60 vs. −89.00 ± 140.11, P = 0.034) and Cop area in the standing positions with eyes open (−143.79 ± 431.55 vs. −93.29 ± 223.15, P = 0.015), Cop trajectory in the seating position with eyes open (−19.95 ± 23.35 vs. −12.83 ± 26.64, P = 0.001) and Cop area in the seating position with eyes open (−15.83 ± 9.61 vs. −11.29 ± 9.17, P = 0.002).ConclusionsThe short-term LQG combined with conventional rehabilitation training significantly improved the balance functions of stroke patients. It also improved static standing and sitting balance with the eyes open, diaphragm functions, maximum phonation time and the quality of daily life for stroke patients.Clinical Trial Registrationhttp://www.chictr.org.cn/edit.aspx?pid=25313&htm=4, Identifier: ChiCTR1800014864.
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- 2022
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26. Lycium barbarum Extracts Extend Lifespan and Alleviate Proteotoxicity in Caenorhabditis elegans
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Haitao Zhou, Shanshan Ding, Chuanxin Sun, Jiahui Fu, Dong Yang, Xi'e Wang, Chih-chen Wang, and Lei Wang
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Lycium barbarum ,aging ,lifespan ,neurodegenerative diseases ,hsf-1 ,sir-2.1 ,Nutrition. Foods and food supply ,TX341-641 - Abstract
Lycium barbarum berry (Ningxia Gouqi, Fructus lycii, goji berry, or wolfberry), as a traditional Chinese herb, was recorded beneficial for longevity in traditional Chinese medical scriptures and currently is a natural dietary supplement worldwide. However, under modern experimental conditions, the longevity effect of L. barbarum berry and the underlying mechanisms have been less studied. Here, we reported that total water extracts of L. barbarum berry (LBE), which contains 22% polysaccharides and other components, such as anthocyanins, extended the lifespan of Caenorhabditis elegans without side effects on worm fertility and pharyngeal pumping. Interestingly, we found that the lifespan extension effect was more prominent in worms with shorter mean lifespan as compared to those with longer mean lifespan. Furthermore, we showed that the lifespan extension effect of LBE depended on deacetylase sir-2.1. Remarkably, LBE rescued heat shock transcription factor-1 (hsf-1) deficiency in wild-type worms with different mean lifespans, and this effect also depended on sir-2.1. In addition, we found that LBE extended lifespan and alleviated toxic protein aggregation in neurodegenerative worms with hsf-1 deficiency. Our study suggested that LBE may be a potential antiaging natural dietary supplement especially to individuals with malnutrition or chronic diseases and a potential therapeutic agent for neurodegenerative diseases characterized by hsf-1 deficiency.
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- 2022
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27. Serum Metabolic Profiles of Chinese Women With Perimenopausal Obesity Explored by the Untargeted Metabolomics Approach
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Shanshan Ding, Mingyi Chen, Ying Liao, Qiliang Chen, Xuejuan Lin, Shujiao Chen, Yujuan Chai, Candong Li, and Tetsuya Asakawa
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perimenopausal obesity ,metabolic profiles ,the ultra-high performance liquid chromatography-quadrupole time-of-flight/mass spectrometry ,metabolic pathway ,metabolomics ,Diseases of the endocrine glands. Clinical endocrinology ,RC648-665 - Abstract
By far, no study has focused on observing the metabolomic profiles in perimenopause-related obesity. This study attempted to identify the metabolic characteristics of subjects with perimenopause obesity (PO). Thirty-nine perimenopausal Chinese women, 21 with PO and 18 without obesity (PN), were recruited in this study. A conventional ultra-high-performance liquid chromatography-quadrupole time-of-flight/mass spectrometry (UHPLC-QTOF/MS) followed by principal component analysis (PCA) and orthogonal partial least-squares discriminant analysis (OPLS-DA) were used as untargeted metabolomics approaches to explore the serum metabolic profiles. Kyoto Encyclopedia of Genes and Genomes (KEGG) and MetaboAnalyst were used to identify the related metabolic pathways. A total of 46 differential metabolites, along with seven metabolic pathways relevant to PO were identified, which belonged to lipid, amino acids, carbohydrates, and organic acids. As for amino acids, we found a significant increase in l-arginine and d-ornithine in the positive ion (POS) mode and l-leucine, l-valine, l-tyrosine, and N-acetyl-l-tyrosine in the negative ion (NEG) mode and a significant decrease in l-proline in the POS mode of the PO group. We also found phosphatidylcholine (PC) (16:0/16:0), palmitic acid, and myristic acid, which are associated with the significant upregulation of lipid metabolism. Moreover, the serum indole lactic acid and indoleacetic acid were upregulated in the NEG mode. With respect to the metabolic pathways, the d-arginine and d-ornithine metabolisms and the arginine and proline metabolism pathways in POS mode were the most dominant PO-related pathways. The changes of metabolisms of lipid, amino acids, and indoleacetic acid provided a pathophysiological scenario for Chinese women with PO. We believe that the findings of this study are helpful for clinicians to take measures to prevent the women with PO from developing severe incurable obesity-related complications, such as cardiovascular disease and stroke.
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- 2021
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28. Saliva‐derived cfDNA is applicable for EGFR mutation detection but not for quantitation analysis in non‐small cell lung cancer
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Shanshan Ding, Xingguo Song, Xinran Geng, Lele Liu, Hongxin Ma, Xiujuan Wang, Ling Wei, Li Xie, and Xianrang Song
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ddPCR ,EGFR mutation detection ,NSCLC ,scfDNA ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Background Both quantitative and qualitative aspects of plasma cell‐free DNA (plasma cfDNA, pcfDNA) have been well‐studied as potential biomarkers in non‐small cell lung cancer (NSCLC). Accumulating evidence has proven that saliva also has the potential for the detection and analysis of circulating free DNA (saliva cfDNA, scfDNA). Methods In the current study, we aimed to explore the potential application of scfDNA in NSCLC diagnostics and consistency of epidermal growth factor receptor (EGFR) mutation detection in paired pcfDNA and scfDNA using droplet digital PCR (ddPCR) and analyze the relationship between EGFR mutations and clinical treatment response. Results In the quantitative cohort study, scfDNA concentration in NSCLC patients was no different from that in healthy donors, or in benign patients. ScfDNA concentration was significantly lower than pcfDNA concentration, yet they were not statistically significant in relevance (Spearman's rank correlation r = −0.123, P = 0.269). In the qualitative cohort study, the overall concordance rate of EGFR mutations between pcfDNA and scfDNA was 83.78% (31 of 37; k = 0.602; P
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- 2019
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29. Nitrogen Addition Effects on Wetland Soils Depend on Environmental Factors and Nitrogen Addition Methods: A Meta-Analysis
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Zeyao Yin, Xiaofei Yu, Yuanchun Zou, Shanshan Ding, and Jingyao Zhang
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nitrogen addition ,meta-analysis ,wetlands ,soil microbial diversity ,functional genes ,Hydraulic engineering ,TC1-978 ,Water supply for domestic and industrial purposes ,TD201-500 - Abstract
Identifying the effects of nitrogen (N) addition under key environmental factors and N addition methods can aid in understanding the paradigm of N addition in wetland ecosystems. In this study, we conducted a meta-analysis of 30 field studies of wetland ecosystems and selected 14 indicators. We found that the changes in soil TN and SOC contributed significantly to the changes in microbial community structure under N additions. The environmental factors and N addition methods altered the direction or size of N addition effects on wetland soil properties, microbial diversity and key C and N cycling genes. N-limited conditions and climate conditions determined the N addition effect direction on SOC, and saline-alkali conditions determined the N addition effect direction on microbial diversity and AOB abundance. Environmental heterogeneity and N addition methods determine the response of wetland soil to nitrogen application. Therefore, it is crucial to study the effects of environmental factors and N addition methods on the N deposition of wetland soils.
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- 2022
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30. Small Nuclear RNAs (U1, U2, U5) in Tumor-Educated Platelets Are Downregulated and Act as Promising Biomarkers in Lung Cancer
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Xiaohan Dong, Shanshan Ding, Miao Yu, Limin Niu, Linlin Xue, Yajing Zhao, Li Xie, Xingguo Song, and Xianrang Song
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small nuclear RNA (snRNA U1 ,U2 ,U5) ,tumor educated platelet ,lung cancer ,biomarkers ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
BackgroundSmall nuclear RNA (snRNA) levels are extremely variable across a wide range of biological conditions. SnRNAs could potentially regulate alternative splicing to drive genetic, dysplastic and neoplastic disease, which might be the main reason for mRNA profile alteration in tumor educated platelets (TEPs).MethodsPlatelets were isolated from the plasma of lung cancer patients and healthy donors by low-speed centrifugation and subjected to RNA isolation. SnRNA U1, U2, U5 levels were detected by quantitative real-time polymerase chain reaction (qRT-PCR). Exosomes were isolated by ultracentrifugation and identified by qNano.ResultsTEP U1, U2, U5 levels were significantly decreased in patients with lung cancer as well as with early stage patients, their downregulation was correlated with lung cancer progression, possessing favorable diagnostic efficiency. More importantly, TEP U1, U2 and U5 levels were closely correlated between paired exosomes and TEP from treated patients but not from untreated ones, and U1, U5 but not U2 in platelets were elevated by apo-exosomes.ConclusionTumor educated platelet small nuclear RNAs are downregulated and act as promising biomarkers in lung cancer.
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- 2020
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31. Introducing Porphyrin Units by Random Copolymerization Into NDI-Based Acceptor for All Polymer Solar Cells
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Jinliang Liu, Mengzhen Li, Dong Chen, Bin Huang, Qiannan He, Shanshan Ding, Wenquan Xie, Feiyan Wu, Lie Chen, and Yiwang Chen
- Subjects
all-polymer solar cells ,porphyrin ,naphthalene diimide ,random copolymerization ,device performance ,Chemistry ,QD1-999 - Abstract
Naphthalene diimide (NDI)-based polymer N2200 is a promising organic polymer acceptor for all-polymer solar cells (all-PSCs), but its inherent shortcomings like poor extinction coefficient and strong aggregation limit further performance optimization of all-PSCs. Here, a series of random copolymers, PNDI-Px, were designed and synthesized by introducing porphyrin unit into NDI-based polymer as acceptors for all-PSCs. These random copolymers show a higher absorption coefficient and raised the lowest unoccupied molecular orbital (LUMO) energy levels compared to N2200. The crystallinity can also be fine-tuned by regulation of the content of porphyrin unit. The random copolymers are matched with polymer donor PBDB-T for the application in all-polymer solar cells. The best power conversion efficiency (PCE) of these PNDI-Px-based devices is 5.93%, ascribed to the overall enhanced device parameters compared with the N2200-based device. These results indicate that introducing porphyrin unit into polymer is a useful way to fine-tune the photoelectric performance for efficient all-PSCs.
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- 2020
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32. Synthesis and Biological Activity of 2′,3′-iso-Aryl-abscisic Acid Analogs
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Chuan Wan, Mingan Wang, Dongyan Yang, Xiaoqiang Han, Chuanliang Che, Shanshan Ding, Yumei Xiao, and Zhaohai Qin
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abscisic acid ,iso-benzoabscisic acid (iso-PhABA) ,iso-PhABA analogs ,ABA like activities ,Organic chemistry ,QD241-441 - Abstract
2′,3′-iso-Benzoabscisic acid (iso-PhABA), an excellent selective abscisic acid (ABA) analog, was developed in our previous work. In order to find its more structure-activity information, some structural modifications were completed in this paper, including the substitution of phenyl ring and replacing the ring with heterocycles. Thus, 16 novel analogs of iso-PhABA were synthesized and screened with three bioassays, Arabidopsis and lettuce seed germination and rice seedling elongation. Some of them, i.e., 2′,3′-iso-pyridoabscisic acid (iso-PyABA) and 2′,3′-iso-franoabscisic acid (iso-FrABA), displayed good bioactivities that closed to iso-PhABA and natural (+)-ABA. Some others, for instance, substituted-iso-PhABA, exhibited certain selectivity to different physiological process when compared to iso-PhABA or (+)-ABA. These analogs not only provided new candidates of ABA-like synthetic plant growth regulators (PGRs) for practical application, but also new potential selective agonist/antagonist for probing the specific function of ABA receptors.
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- 2017
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33. Chaihu-Shugan-San administration ameliorates perimenopausal anxiety and depression in rats.
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Shujiao Chen, Tetsuya Asakawa, Shanshan Ding, Linghong Liao, Lingyuan Zhang, Jianying Shen, Jie Yu, Kenji Sugiyama, Hiroki Namba, and Candong Li
- Subjects
Medicine ,Science - Abstract
Chaihu-Shugan-San (CSS) is a traditional Chinese herbal formula that is widely used for treating perimenopausal symptoms in China; however, its mechanisms remain unknown. The present study was designed to investigate potential CSS mechanisms in rats with unpredicted chronic mild stress (UCMS) and normally aging rats (52 weeks of age). We performed the sucrose consumption test along with the forced swimming test to confirm depression-like behavior and the open field test (OFT) to confirm anxiety-like behavior in the animals. In addition, we used an enzyme-linked immunosorbent assay to measure serum and hippocampal estradiol (E2) levels and a quantitative real-time polymerase chain reaction to assess hippocampal mRNA levels of estrogen receptors (ERs) α and β as well as G protein-coupled receptor 30 (GPR30). We found that CSS administration resulted in a significant increase in the ratio of hippocampal ERα and ERβ mRNA (ERα/ERβ ratio) in UCMS rats (p
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- 2013
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34. From understanding the development landscape of the canonical fate-switch pair to constructing a dynamic landscape for two-step neural differentiation.
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Xiaojie Qiu, Shanshan Ding, and Tieliu Shi
- Subjects
Medicine ,Science - Abstract
Recent progress in stem cell biology, notably cell fate conversion, calls for novel theoretical understanding for cell differentiation. The existing qualitative concept of Waddington's "epigenetic landscape" has attracted particular attention because it captures subsequent fate decision points, thus manifesting the hierarchical ("tree-like") nature of cell fate diversification. Here, we generalized a recent work and explored such a developmental landscape for a two-gene fate decision circuit by integrating the underlying probability landscapes with different parameters (corresponding to distinct developmental stages). The change of entropy production rate along the parameter changes indicates which parameter changes can represent a normal developmental process while other parameters' change can not. The transdifferentiation paths over the landscape under certain conditions reveal the possibility of a direct and reversible phenotypic conversion. As the intensity of noise increases, we found that the landscape becomes flatter and the dominant paths more straight, implying the importance of biological noise processing mechanism in development and reprogramming. We further extended the landscape of the one-step fate decision to that for two-step decisions in central nervous system (CNS) differentiation. A minimal network and dynamic model for CNS differentiation was firstly constructed where two three-gene motifs are coupled. We then implemented the SDEs (Stochastic Differentiation Equations) simulation for the validity of the network and model. By integrating the two landscapes for the two switch gene pairs, we constructed the two-step development landscape for CNS differentiation. Our work provides new insights into cellular differentiation and important clues for better reprogramming strategies.
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- 2012
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35. Classroom Teaching Effect Monitoring and Evaluation System with Deep Integration of Artificial Intelligence.
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Aili Wang 0001, Yingluo Song, Haibin Wu, Shanshan Ding, Linlin Yang, Yunhong Yang, and Yuji Iwahori
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- 2022
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36. A Fast bearing Fault diagnosis method based on lightweight Neural Network RepVGG.
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Yijun Huang, Renwen Chen, Yidi Chen, Shanshan Ding, and Jiaqing Yao
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- 2022
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37. Collaborative Classification of Hyperspectral and LiDAR Data Based on Dual-Branch Convolutional Neural Network.
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Aili Wang 0001, Shuang Xing, Meixin Li, Yunhong Yang, Shanshan Ding, Haibin Wu, and Yuji Iwahori
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- 2022
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38. Understanding the factors related to the opioid epidemic using machine learning.
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Sachin Gavali, Chuming Chen, Julie Cowart, Xi Peng 0005, Shanshan Ding, Cathy H. Wu, and Tammy Anderson
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- 2021
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39. Regulation of Fatty Acid Metabolism and Inhibition of Colorectal Cancer Progression by Erchen Decoction
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Linghong Liao, Fei Zhang, Zewei Zhuo, Chengbao Huang, Xiaofang Zhang, Ruifang Liu, Bizhen Gao, and Shanshan Ding
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Article Subject ,Complementary and alternative medicine - Abstract
Erchen decoction (ECD) is a traditional Chinese prescription widely used in the treatment of various diseases such as obesity, fatty liver, diabetes, and hypertension. In this study, we investigated the effect of ECD on fatty acid metabolism in a colorectal cancer (CRC) mouse model fed a high-fat (HF) diet. The HF-CRC mouse model was established by azoxymethane (AOM)/dextran sulphate sodium (DSS) combined with a high-fat diet. Mice were then gavaged with ECD. Change in the body weight was recorded every two weeks for 26 weeks. Changes in blood glucose (GLU), total cholesterol (TC), total triglycerides (TG), and C-reactive protein (CRP) were measured. Colorectal tissues were collected to observe changes in colorectal length and tumorigenesis. Hematoxylin-eosin (HE) staining and immunohistochemical staining were performed to observe changes in intestinal structure and inflammatory markers. Fatty acids and the expression of related genes in colorectal tissues were also studied. ECD gavage inhibited HF-induced weight gain. CRC induction and HF diet intake resulted in increased GLU, TC, TG, and CRP, where ECD gavage reduced these elevated indicators. ECD gavage also increased colorectal length and inhibited tumorigenesis. HE staining revealed that ECD gavage suppressed inflammatory infiltration of colorectal tissues. ECD gavage suppressed the fatty acid metabolism abnormalities caused by HF-CRC in colorectal tissues. Consistently, ECD gavage lowered ACSL4, ACSL1, CPT1A, and FASN levels in colorectal tissues. Conclusions. ECD inhibited HF-CRC progression through the regulation of fatty acid metabolism.
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- 2023
40. Application of HIS-based medical consumables management system in nursing management in the Department of Stomatology
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Shanshan DING, Xuan WU, and Ling GAN
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- 2022
41. Establishment and practice of teaching mode in the clinical teaching base for dental specialist nurses
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Xue DONG, Xuan WU, Shanshan DING, Ling GAN, and Chunlan LI
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- 2022
42. Cooperative Networking Strategy of UAV Cluster for Large-Scale WSNs
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Yidi Chen, Hao Liu, Jiapeng Guo, Yujie Wang, Fei Liu, Shanshan Ding, and Renwen Chen
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Electrical and Electronic Engineering ,Instrumentation - Published
- 2022
43. Nondestructive Detection of Buried and Latent Defects by Negative Mode E-Beam Inspection
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Ralf Buengener, Jianze Zhao, Shanshan Ding, Xiujun Zheng, Datong Zhang, Chih-Hung Wang, and Junheng Wang
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Electrical and Electronic Engineering ,Condensed Matter Physics ,Industrial and Manufacturing Engineering ,Electronic, Optical and Magnetic Materials - Published
- 2022
44. Exploring the potential antidepressant mechanisms of puerarin: Anti-inflammatory response via the gut-brain axis
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Xujiao, Song, Weihao, Wang, Shanshan, Ding, Yan, Wang, Lufen, Ye, Xin, Chen, and Hao, Ma
- Subjects
Depression ,Brain-Derived Neurotrophic Factor ,Anti-Inflammatory Agents ,NF-kappa B ,Hippocampus ,Isoflavones ,Antidepressive Agents ,Rats ,Disease Models, Animal ,Psychiatry and Mental health ,Clinical Psychology ,NF-KappaB Inhibitor alpha ,RNA, Ribosomal, 16S ,Brain-Gut Axis ,Animals ,Humans ,Stress, Psychological - Abstract
Puerarin has been shown to have a good antidepressant effect, and our previous study found that it can remedy stress-induced dysbiosis. However, its gut microbiota-related mechanism has not been fully elucidated. Therefore, this study aimed to investigate the potential link between puerarin on gut microbiota and inflammatory responses in depressed rats.A chronic unpredictable mild stress (CUMS) rat model of depression was established, open field test (OFT), sucrose preference test (SPT) and forced swimming test (FST) were used to evaluate its antidepressant effect. 16S rRNA sequencing was performed to identify the rat fecal microflora. At the same time, inflammatory cytokines, colonic histopathological changes, and brain-derived neurotrophic factor (BDNF), nuclear factor kappa-B (NF-κB), inhibitor a of NF-κB (IκB-α) protein expression were detected.Puerarin attenuated CUMS-induced depressive-like behavior and gut microbiota dysregulation in rats, significantly reducing the abundance of harmful bacteria such as Desulfovibrio, Verrucomicrobiae, and Verrucomicrobia. In addition, puerarin can also reduce the pro-inflammatory factors and increase the level of anti-inflammatory factors in depressed rats, improve the damaged colon tissue, enhance the expression of BDNF and IκB-α in the hippocampus and inhibit the expression of NF-κB.Direct evidence that puerarin improves depressive-like behaviors via gut microbiota is lacking.The underlying mechanism of puerarin's antidepressant-like effect is closely related to the bidirectional communication of the microbiota-gut-brain axis by regulating the inflammatory response.
- Published
- 2022
45. Ligand engineering of perovskite quantum dots for efficient and stable solar cells
- Author
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Shanshan Ding, Mengmeng Hao, Tongen Lin, Yang Bai, and Lianzhou Wang
- Subjects
Fuel Technology ,Electrochemistry ,Energy Engineering and Power Technology ,Energy (miscellaneous) - Published
- 2022
46. Erchen Decoction Alleviates High-Fat Diet + AOM/DSS-Induced CRC by Ameliorating Cholesterol-Bile Acid Metabolism Disorder through Regulating FXR and the Gut Microbiota
- Author
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Liu, Ruifang, primary, shanshan, Ding, additional, zhaoyang, Yang, additional, fei, Zhang, additional, Fu, Yi, additional, Peng, Xue, additional, Jindi, Zhao, additional, Yang, Yuan, additional, and Liao, Linghong, additional
- Published
- 2023
- Full Text
- View/download PDF
47. Evaluation of Citizen Epidemic Prevention Information Literacy in the Post-Epidemic Era in Mainland China
- Author
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Quanyong Yi, Xu Liu, Shanshan Ding, Xinyue Yao, and Lisha Luo
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epidemic prevention information literacy ,health information literacy ,public health crisis ,evaluation index ,Health, Toxicology and Mutagenesis ,Public Health, Environmental and Occupational Health - Abstract
Improving citizen epidemic prevention information literacy is one of the most cost-efficient and important measures to improve people’s epidemic prevention abilities to effectively deal with future public health crises. Epidemic prevention information literacy is beneficial to improve individuals’ ability to deal with public health crises in the future. By summarizing related domestic and international research, and utilizing an empirical methodology, we constructed an epidemic prevention information literacy assessment model with good reliability, validity, and model fit. The model is composed of four indicators: (1) “epidemic prevention information awareness”; (2) “epidemic prevention information knowledge”; (3) “epidemic prevention information ability”; (4) “epidemic prevention information morality”. We used the model to assess the epidemic prevention information literacy of Chinese citizens. The results showed the following: (1) the overall level of the epidemic prevention information literacy of Chinese citizens was comparatively high, however, its development was unbalanced, and the capability and moral levels of the epidemic prevention information were comparatively low; (2) the four dimensions of the epidemic prevention information literacy were different in terms of the citizens’ education levels and locations. We analyzed the probable causes of these problems, and we propose specific corresponding countermeasures. The research provides a set of methods and norms for the evaluation of citizen epidemic prevention information literacy in the post-epidemic era.
- Published
- 2023
- Full Text
- View/download PDF
48. Occupational outlook for specialist dental nurses
- Author
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Xuan WU, Ling GAN, and Shanshan DING
- Published
- 2022
49. Three‐dimensional decoupling imaging method for wideband two‐dimensional multiple‐input‐multiple‐output radar
- Author
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Pengcheng Wan, Yongshun Zhang, Ningning Tong, Weike Feng, and Shanshan Ding
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Computer science ,radar receivers ,TK5101-6720 ,Multiple input ,law.invention ,radar imaging ,law ,Radar imaging ,Electronic engineering ,Telecommunication ,Electrical and Electronic Engineering ,Radar ,Wideband ,Decoupling (electronics) ,Computer Science::Information Theory - Abstract
Wideband two‐dimensional multiple input multiple output (MIMO) radar can be used for target three‐dimensional (3‐D) imaging. As the echo of wideband MIMO radar is derived from both time and spatial sampling, the time‐frequency coupling is contained, resulting in imaging defocussing. To solve this problem, a time‐frequency decoupling algorithm based on matrix enhancement and matrix pencil (MEMP) is proposed to achieve high‐resolution 3‐D imaging. By combining the enhanced matrix constructed via MEMP with the modern spectral estimation theory, the time‐frequency coupling term is regarded as a space rotation factor and is eliminated in the process of target position estimation. Simulation results show that the proposed algorithm can reduce the negative influence of time‐frequency coupling and improve the imaging accuracy of wideband two‐dimensional MIMO radar.
- Published
- 2022
50. IBL Step Change
- Author
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Carpentieri, Matteo, Shanshan Ding, Robins, Alan, and Placidi, Marco
- Published
- 2023
- Full Text
- View/download PDF
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