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This study reports the complete genome sequence of Sphaerochaeta associata GLS2T (=VKM B-2742T =DSM 26261T), which was isolated from a consortium with methanogenic archaeon Methanosarcina mazei JL01. The consortium was collected from permafrost of the Kolyma lowland in Russia. The hybrid approach, combining paired-end Illumina reads with Oxford Nanopore Technologies MinION reads, was used to assemble the genome. The final assembly resulted in a circular chromosome that is 3,554,903 bp long. This high-quality genome assembly serves as a basis for algorithmic pathway reconstruction and postgenomic analysis. To further this research, the genome was imported into research portals for the algorithmic reconstruction of metabolic pathways, in both common sense (KEGG) and with special attention to carbohydrate metabolism (CAZy). These portals offer high-quality workplaces for in-depth studies.

Cowpea is one of the major legumes cultivated in arid and semiarid regions of the world. Four soil-microbial samples (SS-1 through SS-4) collected from semiarid soils in Punjab, Pakistan were planted with cowpea (Vigna unguiculata) crops, which were grown under salinity stress to analyze bacterial composition in the rhizosphere and within nodules using cultivation-dependent and -independent methods. Two varieties, 603 and the salt-tolerant CB 46, were each inoculated with or without the four different native soil samples or grown in medium either N-deficient (_N) or supplemented with N (+N). Plants inoculated with soil samples SS- 2 and SS-4 grew better than plants inoculated with SS-1- and SS-3 and grew comparably with the +N controls. Environmental DNA (eDNA) was isolated from SS-1 and SS-4, and, by 16S ribosomal RNA sequencing, the soil microbiomes consisted mainly of Actinobacteria, Firmicutes, Proteobacteria, and other nonproteobacterial genera. However, analysis of eDNA isolated from cowpea nodules established by the trap plants showed that the nodule microbiome consisted almost exclusively of proteobacterial sequences, particularly species of Bradyrhizobium. Bacteria were isolated from both soils and nodules, and 34 of the 51 isolates tested positive for plant-growthpromoting rhizobacteria traits in plate assays. Many could serve as future inocula for crops in arid soils. The discrepancy between the types of bacteria isolated by culturing bacteria isolated from surface-sterilized cowpea nodules (proteobacteria and nonproteobacteria) versus those detected by sequencing DNA isolated from the nodules (proteobacteria) from cowpea nodules (proteobacteria and nonproteobacteria) versus those detected in the nodule microbiome (proteobacteria) needs further study.

Raoultella terrigena R1Gly is a diazotrophic endophyte isolated from surface-sterilized roots of Nicotiana tabacum. The whole-genome sequence was obtained to investigate the endophytic characteristics of this organism at the genetic level, as well as to compare this strain with its close relatives. To our knowledge, this is the first genome obtained from the Raoultella terrigena species and only the third genome from the Raoultella genus, after Raoultella ornitholytic and Raoultella planticola. This genome will provide a foundation for further comparative genomic, metagenomic, and functional studies of this genus.

Background: Despite the substantial burden of asthma-related emergency department (ED) visits, there have been no recent multicenter efforts to characterize this high-risk population. Objective: We aimed to characterize patients with asthma according to their frequency of ED visits and to identify factors associated with frequent ED visits. Methods: A multicenter chart review study of 48 EDs across 23 US states. We identified ED patients ages 18 to 54 years with acute asthma during 2011 and 2012. Primary outcome was frequency of ED visits for acute asthma in the past year, excluding the index ED visit. Results: Of the 1890 enrolled patients, 863 patients (46%) had 1 or more (frequent) ED visits in the past year. Specifically, 28% had 1 to 2 visits, 11% had 3 to 5 visits, and 7% had 6 or more visits. Among frequent ED users, guideline-recommended management was suboptimal. For example, of patients with 6 or more ED visits, 85% lacked evidence of prior evaluation by an asthma specialist, and 43% were not treated with inhaled corticosteroids. In a multivariable model, significant predictors of frequent ED visits were public insurance, no insurance, and markers for chronic asthma severity (all P < .05). Stronger associations were found among those with a higher frequency of asthma-related ED visits (eg, 6 or more ED visits). Conclusion: This multicenter study of US adults with acute asthma demonstrated many frequent ED users and suboptimal preventive management in this high-risk population. Future reductions in asthma morbidity and associated health care utilization will require continued efforts to bridge these majorgaps in asthma care.

Within the JGI?s Production Sequencing group, a robust Roche Genome Sequencer and Illumina Genome Analyzer pipeline has been established. Optimization of these sequencer pipelines has been ongoing with the aim of continual process improvement of the laboratory workflow. These process improvement projects are being lead by the JGI's Process Optimization, Sequencing Technologies, Instrumentation and Engineering, and the core Roche/454 and Illumina/GA Production groups. Primary focus has been on improving the procedural ergonomics and the technician's operating environment, reducing manually intensive technician operations with tools and robotic automation, reducing associated production costs, and improving the overall process and generated sequence quality. The foremost of these optimization projects, along with sequencing strategies, throughput numbers, and sequencing quality results will be presented.