21 results on '"Shawn S. Badal"'
Search Results
2. Selonsertib Enhances Kidney Protection Beyond Standard of Care in a Hypertensive, Secondary Glomerulosclerosis CKD Model
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Shawn S. Badal, Tareq Al Tuhaifi, Ya-Fen Yu, David Lopez, Craig T. Plato, Kristin Joly, David G. Breckenridge, Hai-Chun Yang, John T. Liles, and Agnes B. Fogo
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Male ,Pyridines ,Imidazoles ,Angiotensin-Converting Enzyme Inhibitors ,Standard of Care ,General Medicine ,Kidney ,Rats ,Rats, Sprague-Dawley ,Editorial ,Enalapril ,Benzamides ,Hypertension ,Humans ,Albuminuria ,Animals ,Diabetic Nephropathies ,Renal Insufficiency, Chronic ,Protein Kinase Inhibitors ,Antihypertensive Agents ,Original Investigation - Abstract
BACKGROUND: Despite widespread use of renin-aldosterone-angiotensin system inhibitors and the benefits of lowering glomerular pressure in patients with CKD, there remains a major unmet need for therapies targeting underlying causes of CKD progression. Apoptosis signal-regulating kinase 1 (ASK1) promotes apoptosis and glomerulosclerosis, and is implicated in the progression of diabetic kidney disease (DKD), a major cause of CKD. Selonsertib is a selective ASK1 inhibitor currently in clinical development for the treatment of DKD. We examined the added benefits of selonsertib on existing glomerulosclerosis and related molecular pathways in the nondiabetic 5/6 nephrectomy (5/6 Nx) rat model in combination with the angiotensin-converting enzyme inhibitor (ACEI) enalapril. METHODS: Male Sprague Dawley rats underwent 5/6 Nx with kidney biopsy 8 weeks later for assessment of glomerulosclerosis, and were randomized to four treatment groups with equal glomerulosclerosis: selonsertib, enalapril, combination (selonsertib plus enalapril), and untreated controls. Serum creatinine, systolic BP (SBP), and urinary albumin were measured at intervals. Animals were euthanized at week 12 for histologic, biochemical, and molecular analyses. RESULTS: All rats developed hypertension, albuminuria, and glomerulosclerosis by week 8. Kidney function further declined, and glomerulosclerosis and albuminuria progressively increased in controls from week 8 to 12. Enalapril treatment alone from week 8 to 12 reduced SBP versus controls, decreased albuminuria, and resulted in numerically lower glomerulosclerosis. Selonsertib alone had no effect on SBP but preserved kidney function. Combined treatment significantly reduced glomerulosclerosis, with more regression than either monotherapy. Enalapril treatment resulted in fewer interstitial macrophages, whereas selonsertib treatment reduced apoptosis and podocyte loss. RNA-seq revealed that combined treatment influenced pathways related to extracellular matrix and wound healing. CONCLUSIONS: Selonsertib targets a novel, nonhemodynamic pathway in CKD. Our data suggest that ASK1 inhibition, when combined with ACEI, has additive effects to reduce progression of glomerulosclerosis, attenuate kidney function decline, and reduce podocyte loss.
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- 2022
3. Cyclophilin Inhibition Protects Against Experimental Acute Kidney Injury and Renal Interstitial Fibrosis
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Frank Y. Ma, John T. Liles, David J. Nikolic-Paterson, John Kanellis, Khai Gene Leong, Elyce Ozols, and Shawn S. Badal
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0301 basic medicine ,Necrosis ,Neutrophils ,030204 cardiovascular system & hematology ,Pharmacology ,urologic and male genital diseases ,lcsh:Chemistry ,Cyclophilins ,Mice ,0302 clinical medicine ,Medicine ,lcsh:QH301-705.5 ,Spectroscopy ,Acute kidney injury ,neutrophil ,General Medicine ,renal fibrosis ,Computer Science Applications ,Kidney Tubules ,cell death ,Neutrophil Infiltration ,acute kidney injury ,Reperfusion Injury ,cyclophilin ,Kidney Cortex Necrosis ,medicine.symptom ,macrophage ,Protective Agents ,Catalysis ,Article ,Inorganic Chemistry ,03 medical and health sciences ,Cyclophilin A ,Renal fibrosis ,Animals ,Physical and Theoretical Chemistry ,Molecular Biology ,Renal ischemia ,business.industry ,urogenital system ,Macrophages ,Organic Chemistry ,medicine.disease ,Fibrosis ,Calcineurin ,Oxygen ,Disease Models, Animal ,030104 developmental biology ,lcsh:Biology (General) ,lcsh:QD1-999 ,inflammation ,business ,Reperfusion injury ,chronic kidney disease ,Kidney disease - Abstract
Cyclophilins have important homeostatic roles, but following tissue injury, cyclophilin A (CypA) can promote leukocyte recruitment and inflammation, while CypD can facilitate mitochondrial-dependent cell death. This study investigated the therapeutic potential of a selective cyclophilin inhibitor (GS-642362), which does not block calcineurin function, in mouse models of tubular cell necrosis and renal fibrosis. Mice underwent bilateral renal ischemia/reperfusion injury (IRI) and were killed 24 h later: treatment with 10 or 30 mg/kg/BID GS-642362 (or vehicle) began 1 h before surgery. In the second model, mice underwent unilateral ureteric obstruction (UUO) surgery and were killed 7 days later, treatment with 10 or 30 mg/kg/BID GS-642362 (or vehicle) began 1 h before surgery. GS-642362 treatment gave a profound and dose-dependent protection from acute renal failure in the IRI model. This protection was associated with reduced tubular cell death, including a dramatic reduction in neutrophil infiltration. In the UUO model, GS-642362 treatment significantly reduced tubular cell death, macrophage infiltration, and renal fibrosis. This protective effect was independent of the upregulation of IL-2 and activation of the stress-activated protein kinases (p38 and JNK). In conclusion, GS-642362 was effective in suppressing both acute kidney injury and renal fibrosis. These findings support further investigation of cyclophilin blockade in other types of acute and chronic kidney disease.
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- 2021
4. MTHFD2 links RNA methylation to metabolic reprogramming in renal cell carcinoma
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Benny Hung-Junn Chang, Shawn S. Badal, Valerie S. LeBleu, Eric Jonasch, Jianyin Long, Daniel L. Galvan, Nathanael H. Green, and Farhad R. Danesh
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Male ,0301 basic medicine ,Cancer Research ,RNA methylation ,Mice, Nude ,Biology ,medicine.disease_cause ,Methylation ,Article ,Mice ,03 medical and health sciences ,0302 clinical medicine ,Aminohydrolases ,Cell Line, Tumor ,Genetics ,medicine ,Animals ,Humans ,RNA Processing, Post-Transcriptional ,Carcinoma, Renal Cell ,Molecular Biology ,Methylenetetrahydrofolate Dehydrogenase (NADP) ,Regulation of gene expression ,Messenger RNA ,Gene knockdown ,Translation (biology) ,Methyltransferases ,Cellular Reprogramming ,Multifunctional Enzymes ,Kidney Neoplasms ,Cell biology ,Gene Expression Regulation, Neoplastic ,030104 developmental biology ,Anaerobic glycolysis ,030220 oncology & carcinogenesis ,Carbohydrate Metabolism ,Carcinogenesis ,Glycolysis - Abstract
One-carbon metabolism plays a central role in a broad array of metabolic processes required for the survival and growth of tumor cells. However, the molecular basis of how one-carbon metabolism may influence RNA methylation and tumorigenesis remains largely unknown. Here we show MTHFD2, a mitochondrial enzyme involved in one-carbon metabolism, contributes to the progression of renal cell carcinoma (RCC) via a novel epitranscriptomic mechanism that involves HIF-2α. We found that expression of MTHFD2 was significantly elevated in human RCC tissues, and MTHFD2 knockdown strongly reduced xenograft tumor growth. Mechanistically, using an unbiased methylated RNA immunoprecipitation sequencing (meRIP-Seq) approach, we found that MTHFD2 plays a critical role in controlling global N(6)-methyladenosine (m(6)A) methylation levels, including the m(6)A methylation of HIF-2α mRNA, which results in enhanced translation of HIF-2α. Enhanced HIF-2α translation, in turn, promotes the aerobic glycolysis, linking one-carbon metabolism to HIF-2α-dependent metabolic reprogramming through RNA methylation. Our findings also suggest that MTHFD2 and HIF-2α form a positive feedforward loop in RCC, promoting metabolic reprograming and tumor growth. Taken together, our results suggest that MTHFD2 links RNA methylation status to the metabolic state of tumor cells in RCC.
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- 2019
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5. ASK1 contributes to fibrosis and dysfunction in models of kidney disease
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David G. Breckenridge, Laurie A. Castonguay, Giuseppe A. Papalia, Swetha Pendem, Shawn S. Badal, Ford Hinojosa-Kirschenbaum, Gregory T. Notte, Sarah Wise, Michael V. Lee, Keith A. Koch, Agnes B. Fogo, Dorothy French, Britton Kenneth Corkey, Frank Y. Ma, Brian E. Schultz, Eric B. Lansdon, Melanie H. Wong, David J. Nikolic-Paterson, Tareq M Al-Tuhaifi, Theodore Sullivan, Michael Graupe, Haichun Yang, Erik Huntzicker, Grant R. Budas, and John T. Liles
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Male ,0301 basic medicine ,Nephrology ,medicine.medical_specialty ,MAP Kinase Signaling System ,Kidney Glomerulus ,Renal function ,MAP Kinase Kinase Kinase 5 ,Rats, Sprague-Dawley ,Mice ,Random Allocation ,03 medical and health sciences ,Fibrosis ,Internal medicine ,medicine ,Animals ,Humans ,Diabetic Nephropathies ,ASK1 ,Protein Kinase Inhibitors ,Mice, Knockout ,Serine/threonine-specific protein kinase ,Kidney ,business.industry ,Glomerulosclerosis ,General Medicine ,Fibroblasts ,medicine.disease ,Oxidative Stress ,Disease Models, Animal ,030104 developmental biology ,medicine.anatomical_structure ,Cancer research ,Female ,business ,Research Article ,Kidney disease - Abstract
Oxidative stress is an underlying component of acute and chronic kidney disease. Apoptosis signal–regulating kinase 1 (ASK1) is a widely expressed redox-sensitive serine threonine kinase that activates p38 and c-Jun N-terminal kinase (JNK) mitogen-activated protein kinase kinases, and induces apoptotic, inflammatory, and fibrotic signaling in settings of oxidative stress. We describe the discovery and characterization of a potent and selective small-molecule inhibitor of ASK1, GS-444217, and demonstrate the therapeutic potential of ASK1 inhibition to reduce kidney injury and fibrosis. Activation of the ASK1 pathway in glomerular and tubular compartments was confirmed in renal biopsies from patients with diabetic kidney disease (DKD) and was decreased by GS-444217 in several rodent models of kidney injury and fibrosis that collectively represented the hallmarks of DKD pathology. Treatment with GS-444217 reduced progressive inflammation and fibrosis in the kidney and halted glomerular filtration rate decline. Combination of GS-444217 with enalapril, an angiotensin-converting enzyme inhibitor, led to a greater reduction in proteinuria and regression of glomerulosclerosis. These results identify ASK1 as an important target for renal disease and support the clinical development of an ASK1 inhibitor for the treatment of DKD.
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- 2018
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6. Real-time in vivo mitochondrial redox assessment confirms enhanced mitochondrial reactive oxygen species in diabetic nephropathy
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Paul A. Overbeek, Paul T. Schumacker, Farhad R. Danesh, Benny Hung-Junn Chang, Shawn S. Badal, Daniel L. Galvan, and Jianyin Long
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0301 basic medicine ,Green Fluorescent Proteins ,Mice, Inbred Strains ,Mice, Transgenic ,Biosensing Techniques ,Biology ,Mitochondrion ,Kidney ,Redox ,Article ,RoGFP ,Green fluorescent protein ,Podocyte ,Diabetic nephropathy ,Mice ,03 medical and health sciences ,medicine ,Animals ,Diabetic Nephropathies ,Cells, Cultured ,chemistry.chemical_classification ,Reactive oxygen species ,Podocytes ,medicine.disease ,Mitochondria ,Cell biology ,Disease Models, Animal ,Microscopy, Fluorescence, Multiphoton ,030104 developmental biology ,medicine.anatomical_structure ,Diabetes Mellitus, Type 2 ,Biochemistry ,chemistry ,Nephrology ,Mitochondrial matrix ,Reactive Oxygen Species ,Oxidation-Reduction - Abstract
While increased mitochondrial reactive oxygen species have been commonly implicated in a variety of disease states, their in vivo role in the pathogenesis of diabetic nephropathy remains controversial. Using a two-photon imaging approach with a genetically encoded redox biosensor, we monitored mitochondrial redox state in the kidneys of experimental models of diabetes in real-time in vivo . Diabetic ( db/db ) mice that express a redox-sensitive Green Fluorescent Protein biosensor (roGFP) specifically in the mitochondrial matrix ( db/db mt-roGFP) were generated, allowing dynamic monitoring of redox changes in the kidneys. These db/db mt-roGFP mice exhibited a marked increase in mitochondrial reactive oxygen species in the kidneys. Yeast NADH-dehydrogenase, a mammalian Complex I homolog, was ectopically expressed in cultured podocytes, and this forced expression in roGFP-expressing podocytes prevented high glucose–induced increases in mitochondrial reactive oxygen species. Thus, in vivo monitoring of mitochondrial roGFP in diabetic mice confirms increased production of mitochondrial reactive oxygen species in the kidneys.
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- 2017
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7. Inhibition of apoptosis signal-regulating kinase 1 mitigates the pathogenesis of human immunodeficiency virus-associated nephropathy
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John T. Liles, Kyung Lee, Anqun Chen, Vivette D. D'Agati, Han Lai, Shawn S. Badal, Tian-Jun Guan, Jin Xu, and John Cijiang He
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0301 basic medicine ,Pathology ,medicine.medical_specialty ,030232 urology & nephrology ,Renal function ,Mice, Transgenic ,urologic and male genital diseases ,MAP Kinase Kinase Kinase 5 ,Nephropathy ,03 medical and health sciences ,Mice ,0302 clinical medicine ,Renal fibrosis ,Medicine ,Animals ,AIDS-Associated Nephropathy ,Protein Kinase Inhibitors ,Inflammation ,Transplantation ,Kidney ,business.industry ,Glomerulosclerosis ,Original Articles ,medicine.disease ,Fibrosis ,Disease Models, Animal ,Proteinuria ,030104 developmental biology ,medicine.anatomical_structure ,Nephrology ,Albuminuria ,medicine.symptom ,business ,Kidney disease - Abstract
BackgroundChronic kidney disease (CKD) is a common cause of morbidity and mortality in human immunodeficiency virus (HIV)-positive individuals. Among the HIV-related kidney diseases, HIV-associated nephropathy (HIVAN) is a rapidly progressive renal disease characterized by collapsing focal glomerulosclerosis (GS), microcystic tubular dilation, interstitial inflammation and fibrosis. Although the incidence of end-stage renal disease due to HIVAN has dramatically decreased with the widespread use of antiretroviral therapy, the prevalence of CKD continues to increase in HIV-positive individuals. Recent studies have highlighted the role of apoptosis signal-regulating kinase 1 (ASK1) in driving kidney disease progression through the activation of p38 mitogen-activated protein kinase and c-Jun N-terminal kinase and selective ASK-1 inhibitor GS-444217 was recently shown to reduce kidney injury and disease progression in various experimental models. Therefore we examined the efficacy of ASK1 antagonism by GS-444217 in the attenuation of HIVAN in Tg26 mice.MethodsGS-444217-supplemented rodent chow was administered in Tg26 mice at 4 weeks of age when mild GS and proteinuria were already established. After 6 weeks of treatment, the kidney function assessment and histological analyses were performed and compared between age- and gender-matched control Tg26 and GS-444217-treated Tg26 mice.ResultsGS-444217 attenuated the development of GS, podocyte loss, tubular injury, interstitial inflammation and renal fibrosis in Tg26 mice. These improvements were accompanied by a marked reduction in albuminuria and improved renal function. Taken together, GS-4442217 attenuated the full spectrum of HIVAN pathology in Tg26 mice.ConclusionsASK1 signaling cascade is central to the development of HIVAN in Tg26 mice. Our results suggest that the select inhibition of ASK1 could be a potential adjunctive therapy for the treatment of HIVAN.
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- 2019
8. Long noncoding RNA Tug1 regulates mitochondrial bioenergetics in diabetic nephropathy
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Daniel L. Galvan, Nathanael H. Green, Benny Hung-Junn Chang, Jianyin Long, Shawn S. Badal, Zengchun Ye, Farhad R. Danesh, Paul A. Overbeek, Yin Wang, and Bernard A. Ayanga
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Male ,0301 basic medicine ,Mice, Transgenic ,Biology ,Mitochondrion ,Diabetic nephropathy ,Mice ,03 medical and health sciences ,PPARGC1A Gene ,Coactivator ,medicine ,Animals ,Diabetic Nephropathies ,Gene ,Cell Line, Transformed ,Regulation of gene expression ,Podocytes ,General Medicine ,medicine.disease ,Peroxisome Proliferator-Activated Receptor Gamma Coactivator 1-alpha ,Molecular biology ,Long non-coding RNA ,Mitochondria ,030104 developmental biology ,Gene Expression Regulation ,Commentary ,RNA, Long Noncoding ,PPARGC1A ,Energy Metabolism - Abstract
The regulatory roles of long noncoding RNAs (lncRNAs) in transcriptional coactivators are still largely unknown. Here, we have shown that the peroxisome proliferator-activated receptor γ (PPARγ) coactivator α (PGC-1α, encoded by Ppargc1a) is functionally regulated by the lncRNA taurine-upregulated gene 1 (Tug1). Further, we have described a role for Tug1 in the regulation of mitochondrial function in podocytes. Using a murine model of diabetic nephropathy (DN), we performed an unbiased RNA-sequencing (RNA-seq) analysis of kidney glomeruli and identified Tug1 as a differentially expressed lncRNA in the diabetic milieu. Podocyte-specific overexpression (OE) of Tug1 in diabetic mice improved the biochemical and histological features associated with DN. Unexpectedly, we found that Tug1 OE rescued the expression of PGC-1α and its transcriptional targets. Tug1 OE was also associated with improvements in mitochondrial bioenergetics in the podocytes of diabetic mice. Mechanistically, we found that the interaction between Tug1 and PGC-1α promotes the binding of PGC-1α to its own promoter. We identified a Tug1-binding element (TBE) upstream of the Ppargc1a gene and showed that Tug1 binds with the TBE to enhance Ppargc1a promoter activity. These findings indicate that a direct interaction between PGC-1α and Tug1 modulates mitochondrial bioenergetics in podocytes in the diabetic milieu.
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- 2016
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9. Dynamin–Related Protein 1 Deficiency Improves Mitochondrial Fitness and Protects against Progression of Diabetic Nephropathy
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Benny Hung-Junn Chang, Daniel L. Galvan, Shawn S. Badal, Farhad R. Danesh, Bernard A. Ayanga, Yin Wang, and Paul T. Schumacker
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Dynamins ,Male ,0301 basic medicine ,endocrine system ,Pathology ,medicine.medical_specialty ,Mitochondrion ,Biology ,Mitochondrial Dynamics ,Podocyte ,Diabetic nephropathy ,Pathogenesis ,Mice ,03 medical and health sciences ,DNM1L ,In vivo ,medicine ,Animals ,Diabetic Nephropathies ,Podocytes ,General Medicine ,medicine.disease ,Cell biology ,Mice, Inbred C57BL ,Basic Research ,030104 developmental biology ,medicine.anatomical_structure ,Nephrology ,Disease Progression ,Albuminuria ,Mitochondrial fission ,medicine.symptom - Abstract
Mitochondrial fission has been linked to the pathogenesis of diabetic nephropathy (DN). However, how mitochondrial fission affects progression of DN in vivo is unknown. Here, we report the effect of conditional podocyte–specific deletion of dynamin-related protein 1 (Drp1), an essential component of mitochondrial fission, on the pathogenesis and progression of DN. Inducible podocyte–specific deletion of Drp1 in diabetic mice decreased albuminuria and improved mesangial matrix expansion and podocyte morphology. Ultrastructure analysis revealed a significant increase in fragmented mitochondria in the podocytes of wild–type diabetic mice but a marked improvement in mitochondrial structure in Drp1-null podocytes of diabetic mice. When isolated from diabetic mice and cultured in high glucose, Drp1-null podocytes had more elongated mitochondria and better mitochondrial fitness associated with enhanced oxygen consumption and ATP production than wild-type podocytes. Furthermore, administration of a pharmacologic inhibitor of Drp1, Mdivi1, significantly blunted mitochondrial fission and rescued key pathologic features of DN in mice. Taken together, these results provide novel correlations between mitochondrial morphology and the progression of DN and point to Drp1 as a potential therapeutic target in DN.
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- 2016
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10. Diabetic Nephropathy: Emerging Biomarkers for Risk Assessment
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Shawn S. Badal and Farhad R. Danesh
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Adult ,Male ,Endocrinology, Diabetes and Metabolism ,Biology ,Bioinformatics ,Diabetic nephropathy ,Transforming Growth Factor beta1 ,Commentaries ,microRNA ,Gene expression ,Internal Medicine ,medicine ,Gene silencing ,Humans ,Diabetic Nephropathies ,Prospective Studies ,Proteinuria ,Middle Aged ,medicine.disease ,Non-coding RNA ,Prognosis ,3. Good health ,MicroRNAs ,Diabetes Mellitus, Type 1 ,Logistic Models ,Case-Control Studies ,Albuminuria ,Disease Progression ,Kidney Failure, Chronic ,Microalbuminuria ,Female ,medicine.symptom - Abstract
Progression of diabetic nephropathy (DN) is commonly defined by an increase in albuminuria from normoalbuminuria to microalbuminuria and from microalbuminuria to macroalbuminuria. Although early detection of DN can prevent or slow its progression, a major difficulty in inducing remission in patients with early DN is the identification of biomarkers that could help identify patients more likely to progress to end-stage renal disease (ESRD). Traditional risk factors such as albuminuria do not effectively predict DN progression, and other predictors of DN have yet to be characterized and validated. The need for discovering sensitive and easily detectable biomarkers to monitor the decline in renal function and to separate progressors from nonprogressors of DN is therefore of paramount importance. Recently, microRNAs (miRNAs) have emerged as one such potential class of biomarkers. Mature miRNAs are a class of evolutionarily conserved, short (20–22 nucleotides long), noncoding RNA that are potent regulators of gene expression. After several synthesis and processing steps, mature miRNAs are loaded into the RNA-induced silencing complex, which directs the miRNAs to its target messenger RNAs (mRNAs). Once bound to its target mRNA, the RNA-induced silencing complex can facilitate several forms of transcriptional repression depending on the strength of the miRNA-mRNA interaction and seed-sequence/target site complementarity, ultimately resulting in the loss of protein expression (1). Thus, the recent discovery of …
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- 2015
11. MicroRNA-22 Is a Master Regulator of Bone Morphogenetic Protein-7/6 Homeostasis in the Kidney
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Shawn S. Badal, Antony Rodriguez, Benny Hung-Junn Chang, Yin Wang, Farhad R. Danesh, and Jianyin Long
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animal structures ,Transcription, Genetic ,Bone Morphogenetic Protein 6 ,Bone Morphogenetic Protein 7 ,Molecular Sequence Data ,Bone morphogenetic protein 8A ,Biology ,Kidney ,Response Elements ,Biochemistry ,Mice ,Fibrosis ,microRNA ,Renal fibrosis ,medicine ,Animals ,Homeostasis ,Molecular Biology ,Mice, Knockout ,Regulation of gene expression ,Genetics ,Mice, Inbred BALB C ,Base Sequence ,urogenital system ,Molecular Bases of Disease ,Cell Biology ,medicine.disease ,Cell biology ,Bone morphogenetic protein 7 ,MicroRNAs ,Bone morphogenetic protein 6 ,medicine.anatomical_structure ,embryonic structures ,Signal Transduction - Abstract
Accumulating evidence suggests that microRNAs (miRNAs) contribute to a myriad of kidney diseases. However, the regulatory role of miRNAs on the key molecules implicated in kidney fibrosis remains poorly understood. Bone morphogenetic protein-7 (BMP-7) and its related BMP-6 have recently emerged as key regulators of kidney fibrosis. Using the established unilateral ureteral obstruction (UUO) model of kidney fibrosis as our experimental model, we examined the regulatory role of miRNAs on BMP-7/6 signaling. By analyzing the potential miRNAs that target BMP-7/6 in silica, we identified miR-22 as a potent miRNA targeting BMP-7/6. We found that expression levels of BMP-7/6 were significantly elevated in the kidneys of the miR-22 null mouse. Importantly, mice with targeted deletion of miR-22 exhibited attenuated renal fibrosis in the UUO model. Consistent with these in vivo observations, primary renal fibroblast isolated from miR-22-deficient UUO mice demonstrated a significant increase in BMP-7/6 expression and their downstream targets. This phenotype could be rescued when cells were transfected with miR-22 mimics. Interestingly, we found that miR-22 and BMP-7/6 are in a regulatory feedback circuit, whereby not only miR-22 inhibits BMP-7/6, but miR-22 by itself is induced by BMP-7/6. Finally, we identified two BMP-responsive elements in the proximal region of miR-22 promoter. These findings identify miR-22 as a critical miRNA that contributes to renal fibrosis on the basis of its pivotal role on BMP signaling cascade.
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- 2013
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12. miR-93 regulates Msk2-mediated chromatin remodelling in diabetic nephropathy
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Benny Hung-Junn Chang, Shawn S. Badal, Paul A. Overbeek, Luan D. Truong, Yashpal S. Kanwar, Farhad R. Danesh, Yin Wang, David L. Corcoran, and Jianyin Long
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Male ,0301 basic medicine ,medicine.medical_specialty ,Science ,General Physics and Astronomy ,Mice, Transgenic ,Chromatin remodelling ,Ribosomal Protein S6 Kinases, 90-kDa ,Article ,General Biochemistry, Genetics and Molecular Biology ,Diabetes Mellitus, Experimental ,Podocyte ,Diabetic nephropathy ,03 medical and health sciences ,Internal medicine ,Animals ,Humans ,Medicine ,Diabetic Nephropathies ,Aged ,Multidisciplinary ,Podocytes ,business.industry ,Kidney dysfunction ,General Chemistry ,Middle Aged ,Chromatin Assembly and Disassembly ,medicine.disease ,3. Good health ,MicroRNAs ,030104 developmental biology ,medicine.anatomical_structure ,Endocrinology ,Female ,business - Abstract
How the kidney responds to the metabolic cues from the environment remains a central question in kidney research. This question is particularly relevant to the pathogenesis of diabetic nephropathy (DN) in which evidence suggests that metabolic events in podocytes regulate chromatin structure. Here, we show that miR-93 is a critical metabolic/epigenetic switch in the diabetic milieu linking the metabolic state to chromatin remodelling. Mice with inducible overexpression of a miR-93 transgene exclusively in podocytes exhibit significant improvements in key features of DN. We identify miR-93 as a regulator of nucleosomal dynamics in podocytes. miR-93 has a critical role in chromatin reorganization and progression of DN by modulating its target Msk2, a histone kinase, and its substrate H3S10. These findings implicate a central role for miR-93 in high glucose-induced chromatin remodelling in the kidney, and provide evidence for a previously unrecognized role for Msk2 as a target for DN therapy., Podocyte injury is central to kidney dysfunction in diabetic nephropathy. Here the authors show that Msk2 is a target of miR-93 and this interaction mediates pathogenic chromatin remodelling in diabetic nephropathy.
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- 2016
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13. Strategies to reverse endothelial dysfunction in diabetic nephropathy
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Shawn S. Badal and Farhad R. Danesh
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medicine.medical_specialty ,030204 cardiovascular system & hematology ,Nitric oxide ,Diabetic nephropathy ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Enos ,Internal medicine ,Diabetes mellitus ,parasitic diseases ,medicine ,In patient ,cardiovascular diseases ,Endothelial dysfunction ,030304 developmental biology ,0303 health sciences ,biology ,business.industry ,Nitric Oxide Synthase Type III ,medicine.disease ,biology.organism_classification ,Pathophysiology ,3. Good health ,Endocrinology ,chemistry ,Nephrology ,business - Abstract
Endothelial dysfunction underlies the basic pathophysiology of microvascular complications of diabetes. Endothelial dysfunction is associated with impaired nitric oxide (NO) availability. Since NO production is tightly regulated by endothelial nitric oxide synthase (eNOS), several therapeutic strategies have been investigated and proposed to improve eNOS bioavailability in the vasculature. The findings of Cheng et al. suggest that increased availability of eNOS may be an effective strategy in restoring endothelial function in patients with diabetic nephropathy.
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- 2012
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14. Genomewide Clonal Analysis of Lethal Mutations in the Drosophila melanogaster Eye: Comparison of the X Chromosome and Autosomes
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Christopher Lee, Thanh Luu, Maurine Tong, Cheryl Chan, Thomas Walsh, Mabel Chin, Jiong Chen, Jacob Makshanoff, Diane Vo, Yuli Chang, John M. Olson, Tony Hung, Yuki Yamauchi, Manyak Saakyan, Renata P. Lerner, Elizabeth Evers, Latiffe Amado, Nick Garrone, Carol Salame, Jesse M. Zaretsky, Eric Paul, Winston Wu, Trinh Tran, David Kohanchi, James Z. Hui, Neetika Srivastava, Allison M. Yabroff, Aria Hong, Daniel Solomin, Preethi Poulose, Brian Kirkpatrick, Katherine Wu, Eunha Kim, Abbas Anwar, Diane Tan, Nneka Orjiakor, Utpal Banerjee, Lindsay Hovestreydt, Riju Gupta, Michael Hsieh, Jian-ya Lin, Jennifer Leighn. Sta.Ana, Alex Pavlenko, Ardy Davarifar, Stephanie S. Latterman, Shekhar S. Pai, Qing Xu, Phyllis Gayda, Amir Yavari, Allen Bookatz, Kathy T. Ngo, Paul D. Picard, Srpouhi Gasparyan, ToHang S. Lee, Emily Skinner, Sanjit Datta, Jennifer D. Trinh, Sarah Brewer, Courtney Gonzalez, Matteo Pellegrini, Desiree Rosselli, Gerald B. Call, Gemma Lewis, Kosha Soneji, Quynh-Minh Tran, Amy W. Ku, Farzin Farshidi, Cynthia Nguyen, Vivek Singh, Tanya Minasian, Mara Pavel-Dinu, Chad Goffstein, Bryon C. Lim, So-Youn Lee, Stephanie S. Lauw, Long H. Nguyen, Kevin Yackle, Will Yarosh, Santino Laxamana, Chelsea E. Taber, Sarah Kim, Tiffany Liu, Stacy Chan, Armonde Baghdanian, Kelly Trangsrud, Robert Kwak, Gelsey L. Goodstein, Farnaz Shadpour, Mariam Guirguis, Wah-Yung Tsang, Jayantha Thiyanaratnam, Edwin Paz, Chloe Knudsen-Robbins, Tatiana Moroz, Arlene J. Formanes, Mei L. Iao, Latifat Alli, Shawn S. Badal, Kathleen Lin, PhuongThao Tran, Jamie L. Marshall, Regan S. Wong, Akanksha Chhabra, Ran X. Zhu, Amanda Abramson, Sarah Min, Amit Misra, Vanessa Soma, Blake E. Haas, Eddie Garcia, Ndidi Onugha, Divi Ramola, Ya-Whey Wu, Bogdana Kovshilovskaya, Crystal P. Y. Lui, Kai C. Lei, Jeyling Chou, Yasaman Moshfegh, Sohrab Sidhu, Mark E. L. Landig, Michael G. Yeranosian, James S. Yu, Laura Yee, Lydia S-H. Kim, Katrina Fischer, Angela Y. Kim, Junia J. Song, Melissa M. Kelley, Sheila Lezcano, Jingwen Tan, Vincent Luong, Jennifer J. Zhou, Christopher N.H. Bui, Jenny Chan, Sophia D. Jin, Natalie Buu, Emily Weiss, Amanda O'Donahue, Christian Sanchez, Andrew Folick, Nkau X. V. Yang, Christie Sun, Lephong Pham, Stephanie Calvillo, Charles Hu, Yein Kim, Aileen Chang, George Yen, Joy Wu, Poonam Desai, Linda Kao, Emily G. Travis, Mary Unkovic, Damien Wood, Miriam Segura, Marc Uemura, Henry Lin, Maggie Wells, Miles Morimoto, Sumit Datta, Kha Nguyen, Jessica Wickland, Christina C. Seifert, Leo Thai, Bhavin Padhiar, Hei J. Chan, Yibing Chen, Abhishek Shah, Julie Hong, Cheng R. Huang, Sara A. Baumann, Xibin A. Cheng, Russell Powell, Shawn J. Cokus, Sonia Arevalo, Anna L. Abrams, Mark Engeln, Minh-Tu Do, Joseph Cao, JiEun Lee, Brenda Hermogeno, Bassel Rifai, Preethika S Ekanayake, Alison S. Teruya, Carlyn Crisostomo, Lesley L. Leung, Toni Lee, Megan King, Amy Chan, William R. Marrs, Ryan Hassid, Elena Bibikova, Adam D. Langenbacher, Francie Diep, Jun Gong, Joann S. Lee, Manish Pandya, Emil Kohan, Daniel S. Lee, Jenny Anderson, Kristin Spivey, Devon M Huff, Yulee Kim, Thomas Kho, Alma Rangel, Janet Lee, Aneet Toor, Pamela Saarikoski, Nikki Villarasa, Julie Luu, Vivian N. Becerra, Yara A. Mikhaeil, Shahbaz Farnad, Vida Chitsazzadeh, Q. Angela Fang, Ju An, Leena Tekchandani, Tharani Prasad, Elsa Beyer, Christopher M. Allen, Fleurette Chong, Eric Lee, Meghann Ribbens, Sherrylene Go, Amrita K. Cheema, Jordan Fabrikant, Michael Safaee, An-Chi Mei, Peter Lin, Jessica Murray, Nina Sanchez, Katherine Fu, Sacha L. Prashad, Artemis Deravanesian, Erin Marsh, Robyn Tikia, Raymond W. Kung, Sarah Phaklides, Oganes H. Shilgevorkyan, Peter Dang, Aadit R. Patel, Erika Stageberg, Helena Minye, Alexander N. Patananan, Albert Cespedes, Kasey Topp, Vicky Hahm, Keenan Bashour, Joo Choi, Daniel Chang, Majid Moarefi, William Kim, Farid Jamshidian, Inderroop Singh, Aileen E. Chang, Miguel Meza, Edward Kuoy, Danny Ayoub, Aya Pusic, Daniel Sitz, Marina Stavchanskiy, Sophia Wu, Emily Vollmer, Angela Delosreyes, James Jen, Ernesto Nodado, Aram Shemmassian, Kirsten Regalia, Ramnik Singh, Arthur H. Baghdanian, Steve Tovar, H-C. Angela Liu, and Katrin Kahen
- Subjects
Genetics Education ,Genetics ,Mutation ,Genes, Essential ,X Chromosome ,Autosome ,Genome, Insect ,Genes, Insect ,Biology ,Eye ,biology.organism_classification ,medicine.disease_cause ,Clonal analysis ,Clone Cells ,Drosophila melanogaster ,medicine ,Eye development ,Animals ,Genes, Lethal ,Drosophila (subgenus) ,Gene ,X chromosome - Abstract
Using a large consortium of undergraduate students in an organized program at the University of California, Los Angeles (UCLA), we have undertaken a functional genomic screen in the Drosophila eye. In addition to the educational value of discovery-based learning, this article presents the first comprehensive genomewide analysis of essential genes involved in eye development. The data reveal the surprising result that the X chromosome has almost twice the frequency of essential genes involved in eye development as that found on the autosomes.
- Published
- 2007
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15. Managing Microvascular Complications of Diabetes with MicroRNAs
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Farhad R. Danesh and Shawn S. Badal
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Male ,Extramural ,Kidney pathology ,RNA ,General Medicine ,Biology ,Kidney ,Bioinformatics ,medicine.disease ,MicroRNAs ,Basic Research ,Nephrology ,Diabetes mellitus ,Gene expression ,microRNA ,medicine ,Animals ,Collagen - Abstract
Synthesis and deposition of extracellular matrix (ECM) within the glomerulus and interstitium characterizes renal fibrosis, but the mechanisms underlying this process are incompletely understood. The profibrotic cytokine TGF-β1 modulates the expression of certain microRNAs (miRNAs), suggesting that miRNAs may have a role in the pathogenesis of renal fibrosis. Here, we exposed proximal tubular cells, primary mesangial cells, and podocytes to TGF-β1 to examine its effect on miRNAs and subsequent collagen synthesis. TGF-β1 reduced expression of the miR-29a/b/c/family, which targets collagen gene expression, and increased expression of ECM proteins. In both resting and TGF-β1–treated cells, ectopic expression of miR-29 repressed the expression of collagens I and IV at both the mRNA and protein levels by targeting the 3′untranslated region of these genes. Furthermore, we observed low levels of miR-29 in three models of renal fibrosis representing early and advanced stages of disease. Administration of the Rho-associated kinase inhibitor fasudil prevented renal fibrosis and restored expression of miR-29. Taken together, these data suggest that TGF-β1 inhibits expression of the miR-29 family, thereby promoting expression of ECM components. Pharmacologic modulation of these miRNAs may have therapeutic potential for progressive renal fibrosis.
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- 2012
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16. MicroRNAs and Their Applications in Kidney Diseases
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Farhad R. Danesh and Shawn S. Badal
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Nephrology ,medicine.medical_specialty ,Kidney ,Extramural ,Kidney development ,Translation (biology) ,Biology ,medicine.disease ,Bioinformatics ,Non-coding RNA ,Article ,MicroRNAs ,medicine.anatomical_structure ,Internal medicine ,Pediatrics, Perinatology and Child Health ,microRNA ,medicine ,Humans ,Kidney Diseases ,Kidney disease - Abstract
MicroRNAs (miRNAs) are short, non-coding RNAs that employ classic Watson-Crick base-pairing to identify their target genes, ultimately resulting in destabilizing their target mRNAs and/or inhibiting their translation. The role of miRNAs in a wide-range of human diseases, including those afflicting the kidney, has been intensely investigated. However there is still a vast dearth of knowledge regarding their specific mode of action and therapeutic effects in various kidney diseases. This review discusses the latest efforts to further our understanding of the basic biology of miRNAs, their impact on various kidney diseases and their potential as novel biomarkers and therapeutic agents. We initially provide an overview of miRNA biology and the canonical pathway implicated in their biogenesis. We will then discuss commonly employed experimental strategies for miRNA research and highlight some of the newly described state-of-the-art technologies to identify miRNAs and their target genes. Finally, we will carefully examine the emerging role of miRNAs in the pathogenesis of various kidney diseases.
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- 2014
17. New Insights Into Molecular Mechanisms of Diabetic Kidney Disease
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Farhad R. Danesh and Shawn S. Badal
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Epigenomics ,Candidate gene ,Pathology ,medicine.medical_specialty ,medicine.medical_treatment ,Disease ,medicine.disease_cause ,Bioinformatics ,Article ,Pathogenesis ,Diabetes mellitus ,microRNA ,medicine ,Humans ,Diabetic Nephropathies ,Dialysis ,Diabetic kidney ,business.industry ,medicine.disease ,Mitochondria ,MicroRNAs ,Oxidative Stress ,Nephrology ,Disease Progression ,business ,Oxidative stress - Abstract
Diabetic kidney disease remains a major microvascular complication of diabetes and the most common cause of chronic kidney failure requiring dialysis in the United States. Medical advances over the past century have substantially improved the management of diabetes mellitus and thereby have increased patient survival. However, current standards of care reduce but do not eliminate the risk of diabetic kidney disease, and further studies are warranted to define new strategies for reducing the risk of diabetic kidney disease. In this review, we highlight some of the novel and established molecular mechanisms that contribute to the development of the disease and its outcomes. In particular, we discuss recent advances in our understanding of the molecular mechanisms implicated in the pathogenesis and progression of diabetic kidney disease, with special emphasis on the mitochondrial oxidative stress and microRNA targets. Additionally, candidate genes associated with susceptibility to diabetic kidney disease and alterations in various cytokines, chemokines, and growth factors are addressed briefly.
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- 2014
18. Reactive Oxygen Species (ROS) and Diabetic Nephropathy
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Shawn S. Badal, s. s. Badal, and Farhad R. Danesh
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chemistry.chemical_classification ,Diabetic nephropathy ,medicine.medical_specialty ,Reactive oxygen species ,Endocrinology ,Chemistry ,Internal medicine ,medicine ,medicine.disease - Published
- 2014
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19. Measuring the constitutive activation of c-Jun N-terminal kinase isoforms
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Albert J. Wong, Shawn S. Badal, and Ryan T. Nitta
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Cell growth ,Kinase ,Cell ,c-jun ,Activating transcription factor ,JNK Mitogen-Activated Protein Kinases ,Biology ,Article ,Cell biology ,Cell Line ,Isoenzymes ,Mice ,medicine.anatomical_structure ,Cell culture ,Cancer cell ,Cancer research ,medicine ,Phosphorylation ,Animals ,Humans ,Enzyme Assays - Abstract
The c-Jun N-terminal kinases (JNK) are important regulators of cell growth, proliferation, and apoptosis. JNKs are typically activated by a sequence of events that include phosphorylation of its T-P-Y motif by an upstream kinase, followed by homodimerization and translocation to the nucleus. Constitutive activation of JNK has been found in a variety of cancers including non-small cell lung carcinomas, gliomas, and mantle cell lymphoma. In vitro studies show that constitutive activation of JNK induces a transformed phenotype in fibroblasts and enhances tumorigenicity in a variety of cell lines. Interestingly, a subset of JNK isoforms was recently found to autoactivate rendering the proteins constitutively active. These constitutively active JNK proteins were found to play a pivotal role in activating transcription factors that increase cellular growth and tumor formation in mice. In this chapter, we describe techniques and methods that have been successfully used to study the three components of JNK activation. Use of these techniques may lead to a better understanding of the components of JNK pathways and how JNK is activated in cancer cells.
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- 2010
20. Abstract 314: Characterization of the Y83C Gab1 mutation in breast cancer
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Shawn S. Badal, Marina Holgado-Madruga, and Albert J. Wong
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Genetics ,Cancer Research ,biology ,Mutant ,Wild type ,Cancer ,Tyrosine phosphorylation ,medicine.disease ,Molecular biology ,Pleckstrin homology domain ,chemistry.chemical_compound ,Oncology ,chemistry ,biology.protein ,medicine ,Phosphorylation ,GRB2 ,Tyrosine - Abstract
Following addition of various growth factors and cytokines, the Gab1 docking protein is tyrosine phosphorylated, which then activates different signaling pathways. A screening of human breast cancers revealed a mutation in the Pleckstrin homology domain of Gab1, at the 83rd amino acid changing the tyrosine to a cysteine. To explore the impact of this mutation in human breast cancer, the mutation was overexpressed in the MDA-MB 468 cell line. Upon addition of EGF there was a significant higher increase in tyrosine phosphorylation of the mutant versus the wild type that correlated with an increased association with Shc, Shp2, Grb2 and p85. Pull down experiments with the GST/RBD (Ras binding domain of Raf) fusion protein detected higher activity levels of Ras in the mutant form in comparison with the wild type. Soft agar colony formation assays indicated a 2-3 fold increase in the number of colonies in the Y83C mutation with respect to the wt Gab1. The information understood from this study can help to characterize a mutant of Gab1 and this plays an important role in the context of personalized medicine by elucidating a specific target against tumors which express the mutation. Citation Format: {Authors}. {Abstract title} [abstract]. In: Proceedings of the 101st Annual Meeting of the American Association for Cancer Research; 2010 Apr 17-21; Washington, DC. Philadelphia (PA): AACR; Cancer Res 2010;70(8 Suppl):Abstract nr 314.
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- 2010
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21. Inhibition of apoptosis signal-regulating kinase 1 mitigates the pathogenesis of human immunodeficiency virus-associated nephropathy.
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Chen A, Xu J, Lai H, D'Agati VD, Guan TJ, Badal S, Liles J, He JC, and Lee K
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- AIDS-Associated Nephropathy metabolism, AIDS-Associated Nephropathy pathology, Animals, Mice, Mice, Transgenic, AIDS-Associated Nephropathy drug therapy, Disease Models, Animal, Fibrosis prevention & control, Inflammation prevention & control, MAP Kinase Kinase Kinase 5 antagonists & inhibitors, Protein Kinase Inhibitors pharmacology, Proteinuria prevention & control
- Abstract
Background: Chronic kidney disease (CKD) is a common cause of morbidity and mortality in human immunodeficiency virus (HIV)-positive individuals. Among the HIV-related kidney diseases, HIV-associated nephropathy (HIVAN) is a rapidly progressive renal disease characterized by collapsing focal glomerulosclerosis (GS), microcystic tubular dilation, interstitial inflammation and fibrosis. Although the incidence of end-stage renal disease due to HIVAN has dramatically decreased with the widespread use of antiretroviral therapy, the prevalence of CKD continues to increase in HIV-positive individuals. Recent studies have highlighted the role of apoptosis signal-regulating kinase 1 (ASK1) in driving kidney disease progression through the activation of p38 mitogen-activated protein kinase and c-Jun N-terminal kinase and selective ASK-1 inhibitor GS-444217 was recently shown to reduce kidney injury and disease progression in various experimental models. Therefore we examined the efficacy of ASK1 antagonism by GS-444217 in the attenuation of HIVAN in Tg26 mice., Methods: GS-444217-supplemented rodent chow was administered in Tg26 mice at 4 weeks of age when mild GS and proteinuria were already established. After 6 weeks of treatment, the kidney function assessment and histological analyses were performed and compared between age- and gender-matched control Tg26 and GS-444217-treated Tg26 mice., Results: GS-444217 attenuated the development of GS, podocyte loss, tubular injury, interstitial inflammation and renal fibrosis in Tg26 mice. These improvements were accompanied by a marked reduction in albuminuria and improved renal function. Taken together, GS-4442217 attenuated the full spectrum of HIVAN pathology in Tg26 mice., Conclusions: ASK1 signaling cascade is central to the development of HIVAN in Tg26 mice. Our results suggest that the select inhibition of ASK1 could be a potential adjunctive therapy for the treatment of HIVAN., (© The Author(s) 2020. Published by Oxford University Press on behalf of ERA-EDTA. All rights reserved.)
- Published
- 2021
- Full Text
- View/download PDF
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