50 results on '"Shenderovich IG"'
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2. Keep Your TEMPO Up: Nitroxide Radicals as Sensors of Intermolecular Interactions.
- Author
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Shenderovich IG
- Abstract
This study examines experimental data on the influence of the surrounding medium and non-covalent interactions on the isotropic hyperfine coupling constant, A
iso (14 N), of the stable nitroxide radical 2,2,6,6-Tetramethylpiperidin-1-yl)oxyl (TEMPO) in solution. The data were used to identify a density functional theory functional/basis set combination that accurately reproduces the experimental Aiso (14 N) values. The variations in Aiso (14 N) due to external factors are two orders of magnitude greater than the accuracy of its experimental measurements, making Aiso (14 N) a highly sensitive experimental probe for quantifying these effects. Additionally, it was found that the proton-accepting ability of the N-O• moiety in TEMPO resembles that of the P=O moiety, enabling the simultaneous formation of two equally strong hydrogen bonds.- Published
- 2024
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3. Monitoring structure and coordination chemistry of Co 4 O 4 -based oxygen evolution catalysts by nitrogen-14/-15 and cobalt-59 NMR spectroscopy.
- Author
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Uhlig F, Stammler MB, Meurer F, Shenderovich IG, Blahut J, and Wisser FM
- Abstract
The structural features of cobalt-based oxygen evolution catalysts are elucidated by combining high-field MAS NMR spectroscopy and DFT calculations. The superior photocatalytic activity of the heterogeneous system over its homogeneous counterpart is rationalised by the structural features. The higher activity is caused by a more favourable electron-withdrawing character of the framework.
- Published
- 2024
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4. Probing the Isolobal Relation between Cp'''NiP 3 and White Phosphorus by Experimental Charge Density Analysis.
- Author
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Meurer F, Kleemiss F, Riesinger C, Balázs G, Vuković V, Shenderovich IG, Jelsch C, and Bodensteiner M
- Abstract
An in-depth analysis of the description of bonding within Cp'''Ni-cyclo-P
3 (Cp'''=1,2,4-tri-tert-butylcyclopentadienyl, [Ni]P3 ) employing X-ray diffraction based multipolar modeling, density functional theory (DFT) as well as an "experimental wavefunction" obtained from X-ray restrained wavefunction (XRW) fitting is presented. The results are compared to DFT calculations on white phosphorus - an isolobal analogue to [Ni]P3 . A complementary bonding analysis shows insights into the reactivity of [Ni]P3 . The isolobal principle is reflected in every aspect of our analysis and the employed methods seamlessly predict the differences in reactivity of [Ni]P3 and P4 . Crystallographic modeling, solid-state NMR, and DFT calculations describe the dynamic behavior of the cyclo-P3 unit in the title molecule., (© 2024 The Authors. Chemistry - A European Journal published by Wiley-VCH GmbH.)- Published
- 2024
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5. The Scope of the Applicability of Non-relativistic DFT Calculations of NMR Chemical Shifts in Pyridine-Metal Complexes for Applied Applications.
- Author
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Shenderovich IG
- Abstract
Heavy metals are toxic, but it is impossible to stop using them. Considering the variety of molecular systems in which they can be present, the multicomponent nature and disorder of the structure of such systems, one of the most effective methods for studying them is NMR spectroscopy. This determines the need to calculate NMR chemical shifts for expected model systems. For elements beyond the third row of the periodic table, corrections for relativistic effects are necessary when calculating NMR parameters. Such corrections may be necessary even for light atoms due to the shielding effect of a neighboring heavy atom. This work examines the extent to which non-relativistic DFT calculations are able to reproduce experimental
15 N and113 Cd NMR chemical shift tensors in pyridine-metal coordination complexes. It is shown that while for the calculation of15 N NMR chemical shift tensors there is no real need to consider relativistic corrections, for113 Cd, on the contrary, none of the tested calculation methods could reproduce the experimentally obtained tensor to any extent correctly., (© 2024 The Authors. ChemPhysChem published by Wiley-VCH GmbH.)- Published
- 2024
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6. Experimentally Established 15 N NMR Absolute Shielding Scale for Theoretical Calculations.
- Author
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Shenderovich IG
- Abstract
The nitrogen atom of 2,6-di- tert -butyl- N , N -diethylpyridin-4-amine (DEAP) is not available for non-covalent interactions. This molecule has been used to define the reference
15 N NMR absolute chemical shielding (σref ) required to convert between the chemical shift scale used in experiments and the absolute shielding scale used in theoretical calculations. The accuracy of the obtained σref was tested for solid samples of acetanilide-15 N, the protonated homodimer of pyridine-15 N, and poly(4-vinylpyridine-15 N). Experimental15 N NMR chemical shift tensors were compared to15 N NMR shielding tensors calculated using the TPSSh, B3LYP, and ωB97XD functionals and the polarizable continuum model approximation. General recommendations are given for the smallest reliable basis set size. The reported structure of DEAP can be used to calculate σref for any other calculation method.- Published
- 2023
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7. Weak, Broken, but Working-Intramolecular Hydrogen Bond in 2,2'-bipyridine.
- Author
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Shenderovich IG
- Subjects
- Hydrogen Bonding, Solvents chemistry, Hydrogen chemistry, Protons, 2,2'-Dipyridyl chemistry
- Abstract
From an academic and practical point of view, it is desirable to be able to assess the possibility of the proton exchange of a given molecular system just by knowing the positions of the proton acceptor and the proton donor. This study addresses the difference between intramolecular hydrogen bonds in 2,2'-bipyridinium and 1,10-phenanthrolinium. Solid-state
15 N NMR and model calculations show that these hydrogen bonds are weak; their energies are 25 kJ/mol and 15 kJ/mol, respectively. Neither these hydrogen bonds nor N-H stretches can be responsible for the fast reversible proton transfer observed for 2,2'-bipyridinium in a polar solvent down to 115 K. This process must have been caused by an external force, which was a fluctuating electric field present in the solution. However, these hydrogen bonds are the grain that tips the scales precisely because they are an integral part of a large system of interactions, including both intramolecular interactions and environmental influence.- Published
- 2023
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8. Modeling of the Response of Hydrogen Bond Properties on an External Electric Field: Geometry, NMR Chemical Shift, Spin-Spin Scalar Coupling.
- Author
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Shenderovich IG and Denisov GS
- Abstract
The response of the geometric and NMR properties of molecular systems to an external electric field has been studied theoretically in a wide field range. It has been shown that this adduct under field approach can be used to model the geometric and spectral changes experienced by molecular systems in polar media if the system in question has one and only one bond, the polarizability of which significantly exceeds the polarizability of other bonds. If this requirement is met, then it becomes possible to model even extreme cases, for example, proton dissociation in hydrogen halides. This requirement is fulfilled for many complexes with one hydrogen bond. For such complexes, this approach can be used to facilitate a detailed analysis of spectral changes associated with geometric changes in the hydrogen bond. For example, in hydrogen-bonded complexes of isocyanide C≡
15 N-1 H⋯X,1 J(15 N1 H) depends exclusively on the N-H distance, while δ(15 N) is also slightly influenced by the nature of X.- Published
- 2021
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9. Synthesis of a carborane-substituted bis(phosphanido) cobaltate(i), ligand substitution, and unusual P 4 fragmentation.
- Author
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Coburger P, Leitl J, Scott DJ, Hierlmeier G, Shenderovich IG, Hey-Hawkins E, and Wolf R
- Abstract
Oxidative addition of the P-P single bond of an ortho -carborane-derived 1,2-diphosphetane (1,2-C
2 (PMes)2 B10 H10 ) (Mes = 2,4,6-Me3 C6 H2 ) to cobalt(-i) and nickel(0) sources affords the first heteroleptic complexes of a carborane-bridged bis(phosphanido) ligand. The complexes also incorporate labile ligands suitable for further functionalisation. Thus, the cobalt(i) complex [K([18]crown-6)][Co{1,2-(PMes)2 C2 B10 H10 }(cod)] (cod = 1,5-cyclooctadiene) bearing a labile cyclooctadiene ligand undergoes facile ligand exchange reactions with isonitriles and tert -butyl phosphaalkyne with retention of the bis(phosphanido) ligand. However, in the reaction with one equivalent of P4 , the electron-rich bis(phosphanido) moiety abstracts a single phosphorus atom with formation of a new P3 chain, while the remaining three P atoms derived from P4 form an η3 -coordinating cyclo -P3 ligand. In contrast, when the same reaction is performed with two equivalents of the cobalt(i) complex, a dinuclear product is formed which features an unusual P4 chain in its molecular structure., Competing Interests: There are no conflicts to declare., (This journal is © The Royal Society of Chemistry.)- Published
- 2021
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10. 1,3,5-Triaza-7-Phosphaadamantane (PTA) as a 31 P NMR Probe for Organometallic Transition Metal Complexes in Solution.
- Author
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Shenderovich IG
- Subjects
- Adamantane chemistry, Catalysis, Molecular Structure, Water, Adamantane analogs & derivatives, Coordination Complexes chemistry, Magnetic Resonance Spectroscopy methods, Molecular Probes analysis, Organometallic Compounds chemistry, Organophosphorus Compounds chemistry, Phosphorus analysis, Transition Elements chemistry
- Abstract
Due to the rigid structure of 1,3,5-triaza-7-phosphaadamantane (PTA), its
31 P chemical shift solely depends on non-covalent interactions in which the molecule is involved. The maximum range of change caused by the most common of these, hydrogen bonding, is only 6 ppm, because the active site is one of the PTA nitrogen atoms. In contrast, when the PTA phosphorus atom is coordinated to a metal, the range of change exceeds 100 ppm. This feature can be used to support or reject specific structural models of organometallic transition metal complexes in solution by comparing the experimental and Density Functional Theory (DFT) calculated values of this31 P chemical shift. This approach has been tested on a variety of the metals of groups 8-12 and molecular structures. General recommendations for appropriate basis sets are reported.- Published
- 2021
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11. Modeling of Solute-Solvent Interactions Using an External Electric Field-From Tautomeric Equilibrium in Nonpolar Solvents to the Dissociation of Alkali Metal Halides.
- Author
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Shenderovich IG and Denisov GS
- Subjects
- Chloroform, Computer Simulation, Electricity, Models, Molecular, Quantum Theory, Solutions chemistry, Thermodynamics, Cyclohexanes chemistry, Metals, Alkali chemistry, Pyridines chemistry, Solvents chemistry
- Abstract
An implicit account of the solvent effect can be carried out using traditional static quantum chemistry calculations by applying an external electric field to the studied molecular system. This approach allows one to distinguish between the effects of the macroscopic reaction field of the solvent and specific solute-solvent interactions. In this study, we report on the dependence of the simulation results on the use of the polarizable continuum approximation and on the importance of the solvent effect in nonpolar solvents. The latter was demonstrated using experimental data on tautomeric equilibria between the pyridone and hydroxypyridine forms of 2,6-di-tert-butyl-4-hydroxy-pyridine in cyclohexane and chloroform.
- Published
- 2021
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12. Editorial to the Special Issue "Gulliver in the Country of Lilliput: An Interplay of Noncovalent Interactions".
- Author
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Shenderovich IG
- Subjects
- Hydrogen Bonding, Models, Molecular, Macromolecular Substances chemistry, Quantum Theory, Thermodynamics
- Abstract
Noncovalent interactions allow our world to exist [...].
- Published
- 2020
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13. Electric field effect on 31 P NMR magnetic shielding.
- Author
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Shenderovich IG
- Abstract
Magnetic shielding depends on molecular structure and noncovalent interactions. This study shows that it is also measurably dependent on the electric field generated by surrounding molecules. This effect has been observed explicitly for
31 P nucleus using the adduct under field approach. The results obtained indicate that the field strength experienced by molecules in crystals consisting of molecules with large dipole moments is similar to that in polar solvents. Therefore, magnetic shielding should explicitly depend on solvent polarity. It is important to note that this effect cannot be reproduced correctly within the polarizable continuum model approach.- Published
- 2020
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14. Complexation behaviour of LiCl and LiPF 6 - model studies in the solid-state and in solution using a bidentate picolyl-based ligand.
- Author
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Espinosa-Jalapa NA, Berg N, Seidl M, Shenderovich IG, Gschwind RM, and Bauer JO
- Abstract
Structural knowledge on ubiquitous lithium salts in solution and in the crystalline state is of paramount importance for our understanding of many chemical reactions and of the electrolyte behaviour in lithium ion batteries. A bulky bidentate Si-based ligand (6) was used to create simplified model systems suitable for correlating structures of LiCl and LiPF
6 complexes in the solid-state and in solution by combining various experimental, spectroscopic, and computational methods. Solution studies were performed using1 H DOSY, multinuclear variable temperature NMR spectroscopy, and quantum chemical calculations. [Ph2 Si(2-CH2 Py)2 ·LiCl]2 (3) dissociates into a monomeric species (9) in THF. For [Ph2 Si(2-CH2 Py)2 ·LiPF6 ]2 (11), low temperature NMR studies revealed an unprecedented chiral coordination mode (12) in non-coordinating solvents.- Published
- 2020
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15. NMR Study of Intercalates and Grafted Organic Derivatives of H 2 La 2 Ti 3 O 10 .
- Author
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Shelyapina MG, Silyukov OI, Lushpinskaia IP, Kurnosenko SA, Mazur AS, Shenderovich IG, and Zvereva IA
- Subjects
- Butylamines chemistry, Calcium Compounds chemistry, Chemistry, Organic methods, Hot Temperature, Methanol chemistry, Methylamines chemistry, Microscopy, Electron, Scanning, Oxides chemistry, Spectrophotometry, Infrared, Spectrum Analysis, Raman, Temperature, Thermogravimetry, X-Ray Diffraction, Chemistry Techniques, Synthetic methods, Intercalating Agents pharmacology, Lanthanoid Series Elements chemistry, Magnetic Resonance Spectroscopy methods, Oxygen chemistry, Titanium chemistry
- Abstract
The protonated perovskite-like titanate H
2 La2 Ti3 O10 has been used to produce organic-inorganic hybrids with simple organic molecules: methylamine, methanol, monoethanolamine, and n -butylamine. The optimal pathways for the preparation of such hybrids are summarized. Solid-state NMR, combined with thermal analysis, Raman, and IR spectroscopy, has been applied to determine the bonding type in the obtained organic-inorganic hybrids. It has been found that, in the methanolic hybrid, the organic residues are covalently bound to the inorganic matrix. In contrast, in the methylamine and n -butylamine hybrids, the organic molecules are intercalated into the inorganic matrix in cationic forms. The structure of the monoethanolamine hybrid is composite and includes both the covalently bound and intercalated organic species.- Published
- 2020
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16. Inter- vs. Intramolecular Hydrogen Bond Patterns and Proton Dynamics in Nitrophthalic Acid Associates.
- Author
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Jóźwiak K, Jezierska A, Panek JJ, Goremychkin EA, Tolstoy PM, Shenderovich IG, and Filarowski A
- Subjects
- Density Functional Theory, Hydrogen Bonding, Magnetic Resonance Spectroscopy, Molecular Dynamics Simulation, Protons, Spectrum Analysis, Raman, Nitro Compounds chemistry, Phthalic Acids chemistry
- Abstract
Noncovalent interactions are among the main tools of molecular engineering. Rational molecular design requires knowledge about a result of interplay between given structural moieties within a given phase state. We herein report a study of intra- and intermolecular interactions of 3-nitrophthalic and 4-nitrophthalic acids in the gas, liquid, and solid phases. A combination of the Infrared, Raman, Nuclear Magnetic Resonance, and Incoherent Inelastic Neutron Scattering spectroscopies and the Car-Parrinello Molecular Dynamics and Density Functional Theory calculations was used. This integrated approach made it possible to assess the balance of repulsive and attractive intramolecular interactions between adjacent carboxyl groups as well as to study the dependence of this balance on steric confinement and the effect of this balance on intermolecular interactions of the carboxyl groups.
- Published
- 2020
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17. For Whom a Puddle Is the Sea? Adsorption of Organic Guests on Hydrated MCM-41 Silica.
- Author
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Shenderovich IG
- Abstract
Thermal and hydration effects on the mobility of compact and branched organic molecules and a bulky pharmaceutical substance loaded in submonolayer amounts onto mesoporous silica have been elucidated using
1 H and31 P solid-state NMR. In all cases, the ambient hydration has a stronger effect than an increase in temperature to 370 K for water-free silica. The effect of hydration depends on the guest and ranges from complete solvation to a silica-water-guest sandwich structure to a silica-guest/silica-water pattern. The mobility of the guests under different conditions has been described. The specific structure of the MCM-41 surface allows one to study very slow surface diffusion, a diffusivity of about 10-15 - 10-16 m2 /s. The data reported are relevant to any nonfunctionalized silica, while the method used is applicable to any phosphor-containing guest on any host.- Published
- 2020
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18. Adduct under Field-A Qualitative Approach to Account for Solvent Effect on Hydrogen Bonding.
- Author
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Shenderovich IG and Denisov GS
- Subjects
- Acids chemistry, Density Functional Theory, Dimerization, Hydrogen Bonding, Protons, Pyridines chemistry, Thermodynamics, Electricity, Solvents chemistry
- Abstract
The location of a mobile proton in acid-base complexes in aprotic solvents can be predicted using a simplified Adduct under Field (AuF) approach, where solute-solvent effects on the geometry of hydrogen bond are simulated using a fictitious external electric field. The parameters of the field have been estimated using experimental data on acid-base complexes in CDF
3 /CDClF2 . With some limitations, they can be applied to the chemically similar CHCl3 and CH2 Cl2 . The obtained data indicate that the solute-solvent effects are critically important regardless of the type of complexes. The temperature dependences of the strength and fluctuation rate of the field explain the behavior of experimentally measured parameters., Competing Interests: The authors declare no conflict of interest.- Published
- 2020
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19. The Partner Does Matter: The Structure of Heteroaggregates of Acridine Orange in Water.
- Author
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Shenderovich IG
- Subjects
- Fluorescent Dyes chemistry, Molecular Structure, Solutions, Spectrum Analysis, Acridine Orange chemistry, Water chemistry
- Abstract
Self-assembly of organic molecules in aqueous solutions is governed by a delicate entropy/enthalpy balance. Even small changes in their intermolecular interactions can cause critical changes in the structure of the aggregates and their spectral properties. The experimental results reported here demonstrate that protonated cations of acridine orange, acridine, and acridin-9-amine form stable J-heteroaggregates when in water. The structures of these aggregates are justified by the homonuclear
1 H cross-relaxation nuclear magnetic resonance (NMR). The absorption and fluorescence of these aggregates deviate characteristically from the known H-homoaggregates of the protonated cations of acridine orange. The latter makes acridine orange a handy optical sensor for soft matter studies.- Published
- 2019
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20. Solvent effects on acid-base complexes. What is more important: A macroscopic reaction field or solute-solvent interactions?
- Author
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Shenderovich IG and Denisov GS
- Abstract
Can the geometry of an acid-base complex in solution be reproduced in calculations using an implicit accounting for the solvent effect in the form of a macroscopic reaction field? The answer is, "Yes, it can." Is this field equal to the real electric field experienced by the complex in solution? The answer is, "No, it is not." How can the geometry be correct under wrong conditions? This question is answered using density functional theory modeling of geometric and NMR parameters of pyridine⋯HF⋯(HCF
3 )n adducts in the absence and presence of an external electric field. This adduct under field approach shows that the N⋯H distance is a function of the H-F distance whatever method is used to change the geometry of the latter. An explicit account for solute-solvent interactions is required to get a realistic value of the solvent reaction field. Besides that, this approach reveals how certain NMR parameters depend on the solvent reaction field, the solute-solvent interactions, and the geometry of the N⋯H-F hydrogen bond. For some of them, the obtained dependences are far from self-evident.- Published
- 2019
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21. Local-structure effects on 31 P NMR chemical shift tensors in solid state.
- Author
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Chernyshov IY, Vener MV, and Shenderovich IG
- Abstract
The effect of the local structure on the
31 P NMR chemical shift tensor (CST) has been studied experimentally and simulated theoretically using the density functional theory gauge-independent-atomic-orbital approach. It has been shown that the dominating impact comes from a small number of noncovalent interactions between the phosphorus-containing group under question and the atoms of adjacent molecules. These interactions can be unambiguously identified using the Bader analysis of the electronic density. A robust and computationally effective approach designed to attribute a given experimental31 P CST to a certain local morphology has been elaborated. This approach can be useful in studies of surfaces, complex molecular systems, and amorphous materials.- Published
- 2019
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22. Correlations of NHN hydrogen bond energy with geometry and 1 H NMR chemical shift difference of NH protons for aniline complexes.
- Author
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Tupikina EY, Sigalov M, Shenderovich IG, Mulloyarova VV, Denisov GS, and Tolstoy PM
- Abstract
In this computational work, we propose to use the NMR chemical shift difference of NH
2 protons for 1:1 complexes formed by aniline and nitrogen-containing proton acceptors for the estimation of the hydrogen bond energy and geometry (N⋯H and N⋯N distances). The proposed correlations could be applied to other aromatic amines as well, in a gas phase, a solution, or a solid state, for both inter- and intramolecular hydrogen bonds. We considered a set of 21 complexes with the NHN hydrogen bond without proton transfer, including hydrogen bonds from weak to medium strong ones (2-21 kcal/mol), with neutral or anionic bases and with sp3 and sp2 hybridized nitrogen proton acceptors. For each complex apart from direct hydrogen bond energy calculation, we have tested several other ways to estimate the energy: (a) using a correlation between NH stretching band intensity and hydrogen bond energy and (b) using correlations between electron density properties at (3, -1) bond critical point (quantum theory of atoms in molecules analysis) and hydrogen bond energy. Besides for the studied type of complexes, we obtained refined linear correlations linking the local electron kinetic (G) and potential (V) energy densities with the hydrogen bond energy.- Published
- 2019
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23. Amine-Borane Dehydrogenation and Transfer Hydrogenation Catalyzed by α-Diimine Cobaltates.
- Author
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Maier TM, Sandl S, Shenderovich IG, Jacobi von Wangelin A, Weigand JJ, and Wolf R
- Abstract
Anionic α-diimine cobalt complexes, such as [K(thf)
1.5 {(Dipp BIAN)Co(η4 -cod)}] (1; Dipp=2,6-diisopropylphenyl, cod=1,5-cyclooctadiene), catalyze the dehydrogenation of several amine-boranes. Based on the excellent catalytic properties, an especially effective transfer hydrogenation protocol for challenging olefins, imines, and N-heteroarenes was developed. NH3 BH3 was used as a dihydrogen surrogate, which transferred up to two equivalents of H2 per NH3 BH3 . Detailed spectroscopic and mechanistic studies are presented, which document the rate determination by acidic protons in the amine-borane., (© 2019 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.)- Published
- 2019
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24. Simplified calculation approaches designed to reproduce the geometry of hydrogen bonds in molecular complexes in aprotic solvents.
- Author
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Shenderovich IG
- Abstract
The impact of the environment onto the geometry of hydrogen bonds can be critically important for the properties of the questioned molecular system. The paper reports on the design of calculation approaches capable to simulate the effect of aprotic polar solvents on the geometric and NMR parameters of intermolecular hydrogen bonds. A hydrogen fluoride and pyridine complex has been used as the main model system because the experimental estimates of these parameters are available for it. Specifically, F-H, F⋯N, and H-N distances, the values of
15 N NMR shift, and spin-spin coupling constants1 J(19 F1 H),1h J(1 H15 N), and2h J(19 F15 N) have been analyzed. Calculation approaches based on the gas-phase and the Polarizable Continuum Model (PCM) approximations and their combinations with geometric constraints and additional noncovalent interactions have been probed. The main result of this work is that the effect of an aprotic polar solvent on the geometry of a proton-donor⋯H⋯proton-acceptor complex cannot be reproduced under the PCM approximation if no correction for solvent-solute interactions is made. These interactions can be implicitly accounted for using a simple computational protocol.- Published
- 2018
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25. Cyclic trimers of phosphinic acids in polar aprotic solvent: symmetry, chirality and H/D isotope effects on NMR chemical shifts.
- Author
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Mulloyarova VV, Giba IS, Kostin MA, Denisov GS, Shenderovich IG, and Tolstoy PM
- Abstract
The hydrogen-bonded self-associates of dimethylphosphinic (1), diphenylphosphoric (2), phenylphosphinic (3), and bis(2,4,4-trimethylpentyl)phosphinic (4) acids have been studied by using liquid-state NMR down to 100 K in a low-freezing polar solvent, CDF
3 /CDClF2 . The H/D isotope effects on1 H NMR chemical shifts caused by partial deuteration of hydroxyl groups unambiguously reveal the stoichiometry of the self-associates and the cooperativity of their hydrogen bonds. In all cases, cyclic trimers are the dominant form, while cyclic dimers are present as a minor form for 1 and 2. Due to the asymmetry of substituents, cyclic trimers of 3 exist in two isomeric forms, depending on the orientation of the phenyl groups with respect to the plane of the hydrogen bonds. The racemic mixture of 4 leads to the coexistence of up to 64 isomers of cyclic trimers, many of which are chemically equivalent or effectively isochronous. The mole fractions of such isomers deviate from the statistically expected values. This feature could provide information about the relative stabilization energies of hydrogen-bonded chiral self-associates. The complexation of 4 with SbCl5 (complex 5) suppresses the self-association and 5 exists exclusively in the monomeric form with chemically non-equivalent31 P nuclei in RS, SR and RR/SS forms.- Published
- 2018
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26. NMR Study of Solvation Effect on the Geometry of Proton-Bound Homodimers of Increasing Size.
- Author
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Gurinov AA, Denisov GS, Borissova AO, Goloveshkin AS, Greindl J, Limbach HH, and Shenderovich IG
- Abstract
Hydrogen bond geometries in the proton-bound homodimers of quinoline and acridine derivatives in an aprotic polar solution have been experimentally studied using
1 H NMR at 120 K. The reported results show that an increase of the dielectric permittivity of the medium results in contraction of the N···N distance. The degree of contraction depends on the homodimer's size and its substituent-specific solvation features. Neither of these effects can be reproduced using conventional implicit solvent models employed in computational studies. In general, the N···N distance in the homodimers of pyridine, quinoline, and acridine derivatives decreases in the sequence gas phase > solid state > polar solvent.- Published
- 2017
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27. Selective P 4 Activation by a Highly Reduced Cobaltate: Synthesis of Dicobalt Tetraphosphido Complexes.
- Author
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Pelties S, Maier T, Herrmann D, de Bruin B, Rebreyend C, Gärtner S, Shenderovich IG, and Wolf R
- Abstract
Although the chemistry of transition metal polyphosphide anions has attracted significant attention, there are few reports of studies in which such species have been synthesized directly from white phosphorus. [K(OEt
2 )2 {Co(BIAN)(cod)}] (1, BIAN=1,2-bis(2,6-diisopropylphenylimino)acenaphthene, cod=1,5-cyclooctadiene), which is readily prepared by ligand exchange from [K(thf)x {Co(cod)2 }], reacts with P4 to afford [{K(thf)}2 {(BIAN)Co}2 (μ-η4 :η4 -P4 )] (2 a) in 61 % yield (isolated product). [{K(OEt2 )}2 {(BIAN)Co}2 (μ-η4 :η4 -P4 )] (2 b) and [K([18]crown-6)(MeCN)]2 [{(BIAN)Co}2 (μ-η4 :η4 -P4 )] (2 c) were obtained by recrystallizing 2 a from diethyl ether and acetonitrile (and using [18]crown-6 in case of 2 c). Oxidation of 2 a with [Cp2 Fe]BArF 4 (one equivalent) and subsequent recrystallization of the product from different solvents gave [K(OEt2 ){(BIAN)Co}2 (μ-η4 :η4 -P4 )] (3 a) and [K(dme)4 ][{(BIAN)Co}2 (μ-η4 :η4 -P4 )] (3 b; dme=1,2-dimethoxyethane). Neutral [{(BIAN)Co}2 (μ-η4 :η4 -P4 )] (4) was obtained in moderate yield by oxidizing 2 a with two equivalents of [Cp2 Fe]BArF 4 . The new complexes were characterized by NMR, EPR (in the case of 3 a), and UV/Vis spectroscopy, and elemental analysis. The molecular structures revealed by X-ray crystallography display planar cyclic or open-chain P4 4- units sandwiched between {(BIAN)Co} fragments., (© 2017 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.)- Published
- 2017
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28. NMR studies of active-site properties of human carbonic anhydrase II by using (15) N-labeled 4-methylimidazole as a local probe and histidine hydrogen-bond correlations.
- Author
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Shenderovich IG, Lesnichin SB, Tu C, Silverman DN, Tolstoy PM, Denisov GS, and Limbach HH
- Subjects
- Humans, Hydrogen, Hydrogen Bonding, Carbonic Anhydrase II chemistry, Histidine chemistry, Imidazoles chemistry, Magnetic Resonance Spectroscopy methods
- Abstract
By using a combination of liquid and solid-state NMR spectroscopy, (15) N-labeled 4-methylimidazole (4-MI) as a local probe of the environment has been studied: 1) in the polar, wet Freon CDF3 /CDF2 Cl down to 130 K, 2) in water at pH 12, and 3) in solid samples of the mutant H64A of human carbonic anhydrase II (HCA II). In the latter, the active-site His64 residue is replaced by alanine; the catalytic activity is, however, rescued by the presence of 4-MI. For the Freon solution, it is demonstrated that addition of water molecules not only catalyzes proton tautomerism but also lifts its quasidegeneracy. The possible hydrogen-bond clusters formed and the mechanism of the tautomerism are discussed. Information about the imidazole hydrogen-bond geometries is obtained by establishing a correlation between published (1) H and (15) N chemical shifts of the imidazole rings of histidines in proteins. This correlation is useful to distinguish histidines embedded in the interior of proteins and those at the surface, embedded in water. Moreover, evidence is obtained that the hydrogen-bond geometries of His64 in the active site of HCA II and of 4-MI in H64A HCA II are similar. Finally, the degeneracy of the rapid tautomerism of the neutral imidazole ring His64 reported by Shimahara et al. (J. Biol. Chem.- 2007, 282, 9646) can be explained with a wet, polar, nonaqueous active-site conformation in the inward conformation, similar to the properties of 4-MI in the Freon solution. The biological implications for the enzyme mechanism are discussed., (© 2015 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.)
- Published
- 2015
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29. How short is the strongest hydrogen bond in the proton-bound homodimers of pyridine derivatives?
- Author
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Gurinov AA, Lesnichin SB, Limbach HH, and Shenderovich IG
- Subjects
- Dimerization, Gases chemistry, Hydrogen chemistry, Ions chemistry, Magnetic Resonance Spectroscopy, Nitrogen chemistry, Hydrogen Bonding, Protons, Pyridines chemistry
- Abstract
Hydrogen bond geometries in the proton-bound homodimers of ortho-unsubstituted and ortho-methylsubstituted pyridine derivatives in aprotic polar solution were estimated using experimental NMR data. Within the series of homodimers studied the hydrogen bond lengths depend on the proton affinity of pyridines and--at least for the ortho-methylsubstituted pyridines--on the pKa of the conjugate acids in an approximately quadratic manner. The shortest possible hydrogen bond in the homodimers of ortho-unsubstituted pyridines is characterized by the N···N distance of 2.613 Å. Steric repulsion between the methyl groups of the ortho-methylsubstituted pyridines becomes operative at an N···N distance of ∼2.7 Å and limits the closest approach to 2.665 Å.
- Published
- 2014
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30. NMR studies of solid pentachlorophenol-4-methylpyridine complexes exhibiting strong OHN hydrogen bonds: geometric H/D isotope effects and hydrogen bond coupling cause isotopic polymorphism.
- Author
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Ip BC, Shenderovich IG, Tolstoy PM, Frydel J, Denisov GS, Buntkowsky G, and Limbach HH
- Subjects
- Crystallography, X-Ray, Deuterium Exchange Measurement, Hydrogen Bonding, Magnetic Resonance Spectroscopy, Models, Molecular, Molecular Structure, Nitrogen Isotopes, Quantum Theory, Hydrocarbons, Chlorinated chemistry, Pentachlorophenol chemistry, Picolines chemistry, Pyridines chemistry
- Abstract
We have studied the hydrogen bond interactions of (15)N labeled 4-methylpyridine (4-MP) with pentachlorophenol (PCP) in the solid state and in polar solution using various NMR techniques. Previous spectroscopic, X-ray, and neutron crystallographic studies showed that the triclinic 1:1 complex (4-MPPCP) exhibits the strongest known intermolecular OHN hydrogen bond in the solid state. By contrast, deuteration of the hydrogen bond gives rise to the formation of a monoclinic structure exhibiting a weaker hydrogen bond. By performing NMR experiments at different deuterium fractions and taking advantage of dipolar (1)H-(15)N recoupling under combined fast MAS and (1)H decoupling, we provide an explanation of the origin of the isotopic polymorphism of 4-MPPCP and improve previous chemical shift correlations for OHN hydrogen bonds. Because of anharmonic ground state vibrations, an ODN hydrogen bond in the triclinic form exhibits a shorter oxygen-hydron and a longer oxygen-nitrogen distance as compared to surrounding OHN hydrogen bonds, which also implies a reduction of the local dipole moment. The dipole-dipole interaction between adjacent coupled OHN hydrogen bonds which determines the structure of triclinic 4-MPPCP is then reduced by deuteration, and other interactions become dominant, leading to the monoclinic form. Finally, the observation of stronger OHN hydrogen bonds by (1)H NMR in polar solution as compared to the solid state is discussed.
- Published
- 2012
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31. Does water affect the acidity of surfaces? The proton-donating ability of silanol and carboxylic acid groups at mesoporous silica.
- Author
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Gurinov AA, Mauder D, Akcakayiran D, Findenegg GH, and Shenderovich IG
- Published
- 2012
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32. Critical hydrogen bonds and protonation states of pyridoxal 5'-phosphate revealed by NMR.
- Author
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Limbach HH, Chan-Huot M, Sharif S, Tolstoy PM, Shenderovich IG, Denisov GS, and Toney MD
- Subjects
- Amines chemistry, Hydrogen Bonding, Lysine chemistry, Magnetic Resonance Spectroscopy, Protons, Solutions, Water, Pyridoxal Phosphate chemistry
- Abstract
In this contribution we review recent NMR studies of protonation and hydrogen bond states of pyridoxal 5'-phosphate (PLP) and PLP model Schiff bases in different environments, starting from aqueous solution, the organic solid state to polar organic solution and finally to enzyme environments. We have established hydrogen bond correlations that allow one to estimate hydrogen bond geometries from (15)N chemical shifts. It is shown that protonation of the pyridine ring of PLP in aspartate aminotransferase (AspAT) is achieved by (i) an intermolecular OHN hydrogen bond with an aspartate residue, assisted by the imidazole group of a histidine side chain and (ii) a local polarity as found for related model systems in a polar organic solvent exhibiting a dielectric constant of about 30. Model studies indicate that protonation of the pyridine ring of PLP leads to a dominance of the ketoenamine form, where the intramolecular OHN hydrogen bond of PLP exhibits a zwitterionic state. Thus, the PLP moiety in AspAT carries a net positive charge considered as a pre-requisite to initiate the enzyme reaction. However, it is shown that the ketoenamine form dominates in the absence of ring protonation when PLP is solvated by polar groups such as water. Finally, the differences between acid-base interactions in aqueous solution and in the interior of proteins are discussed. This article is part of a special issue entitled: Pyridoxal Phosphate Enzymology., (Copyright © 2011. Published by Elsevier B.V.)
- Published
- 2011
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33. Mutable Lewis and Brønsted acidity of aluminated SBA-15 as revealed by NMR of adsorbed pyridine-15N.
- Author
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Gurinov AA, Rozhkova YA, Zukal A, Čejka J, and Shenderovich IG
- Subjects
- Adsorption, Hydrogen-Ion Concentration, Magnetic Resonance Spectroscopy, Molecular Structure, Nitrogen Isotopes, Surface Properties, Temperature, Acids chemistry, Pyridines chemistry, Silicon Dioxide chemistry
- Abstract
(1)H and variable-temperature (15)N NMR techniques have been used to study the effect of the gradual alumination of SBA-15 on the structure and adsorption properties of this mesoporous material. The interpretation of experimental spectra suggests that aluminum chlorhydrol most effectively reacts with silica surfaces in the confinement of the cavities of rough mesopore walls, instead of forming a homogeneous aluminum film. This first leads to a gradual filling of the cavities and finally results in aluminum islands on the inner surfaces of mesopores. In the sample with a Si/Al atomic ratio of 4.1, up to half of the inner surface area of the mesopores is covered with aluminum. The alumination produces Brønsted acid sites attributed to silanol groups interacting with aluminum but does not affect the proton-donating ability of isolated silanol groups. At high Si/Al ratios, the surface contains only one type of Lewis site attributed to tetracoordinated aluminum. At lower Si/Al ratios, Lewis acid sites with a lower electron-accepting ability appear, as attributed to pentacoordinated aluminum. The numerical values of the surface densities of all chemically active sites have been estimated after annealing at 420 and 700 K. We were surprised to observe that gaseous nitrogen can occupy Lewis acid sites and hinder the interaction of the aluminum with any other electron donor. As a result, aluminated surfaces saturated with nitrogen do not exhibit any Brønsted or Lewis acidity. At room temperature, it takes days before pyridine replaces nitrogen at the Lewis acid sites., (© 2011 American Chemical Society)
- Published
- 2011
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34. Spectroscopic Signatures of [H9O4]+ and [H13O6]+ Ions in a Polar Aprotic Environment Revealed Under DFT-PCM Approximation.
- Author
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Vener MV, Kong S, Levina AA, and Shenderovich IG
- Abstract
The structures, relative stability, infrared (IR) and Raman spectra of the most-stable forms of [H9O4]+ and [H13O6]+ ions in acetonitrile are computed using the B3LYP functional combined with the Polarizable Continuum Model approximation. These forms are hydrated [H3O]+ and [H5O2]+ cores. Of interest are two main environmental effects on the spectroscopic features of protonated water hydrates: (i) polarization of the solvent by the hydrate dipole moment; (ii) formation of H-bonds with bulky counterions (ClO4- and BF4-). The effect of the polarization on the structure of the [H3O]+ core strongly depends on the symmetry of the hydration shell. A distortion of a hydrated [H3O]+ easily changes its structure to the [H7O3]+ one that causes a change in the nature of the most IR-intensive bands. Thus, the specificity of this core can be easily lost that prevents identification of the corresponding species. By contrast, the [H5O2]+ core is more stable against distortion. It is characterized by the short O…O distance (< 2.45 Å), IR-intensive band near 1720 cm-1 and Raman-intensive line around 500 cm-1. The [H5O2]+ core remains identifiable even when protonated hydrate is involved in specific interactions with a bulky counterion. Geometrical criteria for identification of the [H3O]+, [H5O2]+ and [H7O3]+ cores are discussed.
- Published
- 2011
35. Intrinsic proton-donating power of zinc-bound water in a carbonic anhydrase active site model estimated by NMR.
- Author
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Lesnichin SB, Shenderovich IG, Muljati T, Silverman D, and Limbach HH
- Subjects
- Animals, Catalytic Domain, Humans, Nuclear Magnetic Resonance, Biomolecular, Carbonic Anhydrases chemistry, Protons, Water chemistry, Zinc chemistry
- Abstract
Using liquid-state NMR spectroscopy we have estimated the proton-donating ability of Zn-bound water in organometallic complexes designed as models for the active site of the metalloenzyme carbonic anhydrase (CA). This ability is important for the understanding of the enzyme reaction mechanism. The desired information was obtained by (1)H and (15)N NMR at 180 K of solutions of [Tp(Ph,Me)ZnOH] [1, Tp(Ph,Me) = tris(2-methyl-4-phenylpyrazolyl)hydroborate] in CD(2)Cl(2), in the absence and presence of the proton donors (C(6)F(5))(3)BOH(2) [aquatris(pentafluorophenyl)boron] and Col-H(+) (2,4,6-trimethylpyridine-H(+)). Col-H(+) forms a strong OHN hydrogen bond with 1, where the proton is located closer to nitrogen than to oxygen. (C(6)F(5))(3)BOH(2), which exhibits a pK(a) value of 1 in water, also forms a strong hydrogen bond with 1, where the proton is shifted slightly across the hydrogen-bond center toward the Zn-bound oxygen. Finally, a complex between Col and (C(6)F(5))(3)BOH(2) was identified, exhibiting a zwitterionic OHN hydrogen bond, where H is entirely shifted to nitrogen. The comparison with complexes of Col with carboxylic acids studied previously suggests that, surprisingly, the Zn-bound water exhibits in an aprotic environment a similar proton-donating ability as a carboxylic acid characterized in water by a pK(a) of 2.2 ± 0.6. This value is much smaller than the value of 9 found for [Zn(OH(2))(6)](2+) in water and those between 5 and 8 reported for different forms of CA. Implications for the biological function of CA are discussed.
- Published
- 2011
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36. Geometry and spectral properties of the protonated homodimer of pyridine in the liquid and solid states. A combined NMR, X-ray diffraction and inelastic neutron scattering study.
- Author
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Kong S, Borissova AO, Lesnichin SB, Hartl M, Daemen LL, Eckert J, Antipin MY, and Shenderovich IG
- Subjects
- Magnetic Resonance Spectroscopy, Molecular Structure, Neutron Diffraction, Protons, X-Ray Diffraction, Dimerization, Pyridines chemistry, Spectrum Analysis methods
- Abstract
The structure and spectral signatures of the protonated homodimer of pyridine in its complex with a poorly coordinating anion have been studied in solution in CDF(3)/CDClF(2) down to 120 K and in a single crystal. In both phases, the hydrogen bond is asymmetric. In the solution, the proton is involved in a fast reversible transfer that determines the multiplicity of NMR signals and the sign of the primary H/D isotope effect of --0.95 ppm. The proton resonates at 21.73 ppm that is above any value reported in the past and is indicative of a very short hydrogen bond. By combining X-ray diffraction analysis with model computations, the position of the proton in the crystal has been defined as d(N-H) = 1.123 Å and d(H···N) = 1.532 Å. The same distances have been estimated using a (15)N NMR correlation. The frequency of the protonic out-of-plane bending mode is 822 cm(-1) in agreement with Novak's correlation.
- Published
- 2011
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37. "Hexagonal molybdenum trioxide"--known for 100 years and still a fount of new discoveries.
- Author
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Lunk HJ, Hartl H, Hartl MA, Fait MJ, Shenderovich IG, Feist M, Frisk TA, Daemen LL, Mauder D, Eckelt R, and Gurinov AA
- Abstract
In 1906, the preparation of “molybdic acid hydrate” was published by Arthur Rosenheim. Over the past 40 years, a multitude of isostructural compounds, which exist within a wide phase range of the system MoO3−NH3−H2O, have been published. The reported molecular formulas of “hexagonal molybdenum oxide” varied from MoO3 to MoO3·0.33NH3 to MoO3·nH2O (0.09 ≤ n ≤ 0.69) to MoO3·mNH3·nH2O (0.09 ≤ m ≤ 0.20; 0.18 ≤ n ≤ 0.60). Samples, prepared by the acidification route were investigated using thermal analysis coupled online to a mass spectrometer for evolved gas analysis, X-ray powder diffraction, Fourier transform infrared, Raman, magic-angle-spinning 1H- and 15N NMR spectroscopy, and incoherent inelastic neutron scattering. A comprehensive characterization of these samples will lead to a better understanding of their structure and physical properties as well as uncover the underlying relationship between the various compositions. The synthesized polymeric parent samples can be represented by the structural formula (NH4)(x∞)(3)[Mo(y square 1−y)O(3y)(OH)(x)(H2O)(m−n)]·nH2O with 0.10 ≤ x ≤ 0.14, 0.84 ≤ y ≤ 0.88, and m + n ≥ 3 − x − 3y. The X-ray study of a selected monocrystal confirmed the presence of the well-known 3D framework of edge- and corner-sharing MoO6 octahedra. The colorless monocrystal crystallizes in the hexagonal system with space group P6(3)/m, Z = 6, and unit cell parameters of a = 10.527(1) Å, c = 3.7245(7) Å, V = 357.44(8) Å3, and ρ = 3.73 g·cm(−3). The structure of the prepared monocrystal can best be described by the structural formula (NH4)(0.13∞)(3)[Mo(0.86 square 0.14)O2.58(OH)0.13(H2O)(0.29−n)]·nH2O, which is consistent with the existence of one vacancy (square) for six molybdenum sites. The sample MoO3·0.326NH3·0.343H2O, prepared by the ammoniation of a partially dehydrated MoO3·0.170NH3·0.153H2O with dry gaseous ammonia, accommodates NH3 in the hexagonal tunnels, in addition to [NH4]+ cations and H2O. The “chimie douce” reaction of MoO3·0.155NH3·0.440H2O with a 1:1 mixture of NO/NO2 at 100 °C resulted in the synthesis of MoO3·0.539H2O. This material is of great interest as a host of various molecules and cations.
- Published
- 2010
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38. Counteranion-dependent mechanisms of intramolecular proton transfer in aprotic solution.
- Author
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Lesnichin SB, Tolstoy PM, Limbach HH, and Shenderovich IG
- Subjects
- Crystallography, X-Ray, Hydrogen Bonding, Magnetic Resonance Spectroscopy, Molecular Conformation, Solutions, Stereoisomerism, Temperature, 2,2'-Dipyridyl chemistry, Protons
- Abstract
Using the freon mixture CDF(3)/CDClF(2) as solvent we have been able to measure the (1)H and (15)N NMR spectra of the doubly (15)N labeled 2,2'-bipyridinium cation (BpyH(+)) at temperatures down to 115 K. The obtained NMR parameters strongly depend on the type of counteranions indicating the formation of ion pairs. In the case of the bulky poorly coordinating tetrakis[3,5-bis(trifluoromethyl)phenyl]-borate as the counteranion a strong intramolecular NHN hydrogen bond was observed in BpyH(+) exhibiting a degenerate intramolecular proton transfer which is of the order of 10(6) s(-1) even at 120 K. By contrast, the weak hydrogen bond acceptor tetrafluoroborate favors a weak intermolecular FHN interaction and quenches the intramolecular proton transfer. The intramolecular proton transfer requires in this case a dissociation of the ion pair which is hindered by the Coulomb interaction. A slow intramolecular proton transfer was observed in the case of dichloroacetate which forms a strong intermolecular OHN hydrogen bond to BpyH(+). The mechanism of this transfer presumably involves a preliminary intermolecular proton transfer from nitrogen towards oxygen followed by a hydrogen bond switch to the neighboring nitrogen to which the proton is then transferred.
- Published
- 2010
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39. Photoinduced proton transfer in a pyridine based polymer gel.
- Author
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Vaganova E, Wachtel E, Leitus G, Danovich D, Lesnichin S, Shenderovich IG, Limbach HH, and Yitzchaik S
- Abstract
We describe an experimental and theoretical consideration of photoexcited proton transfer in a poly(4-vinyl pyridine)/pyridine gel. Evidence was found for two states of a multiple state process analyzed by DFT modeling. According to the latter, following irradiation at 385 nm, the proton donor is the CH group of the polymer main chain and the proton acceptor is the nitrogen of the polymeric pyridine side chain. Proton transfer is made possible through the assistance of a mobile pyridine solvent molecule acting as a transfer vehicle. Proton transfer promotes both a geometrical rearrangement of the vinyl side chain as well as electronic density redistribution. The photoproduct intermediate-the hydrogen-bonded complex between the protonated solvent pyridine molecule and the deprotonated polymeric pyridine side chain-is identified by its Curie law magnetic susceptibility, ESR spectrum, and fluorescence lifetime measurements. The proton transfer from the nitrogen of the solvent pyridine molecule to the pyridine side chain nitrogen, producing pyridinium, is a thermodynamically favorable relaxation process and occurs without an energy barrier. The protonation of nitrogen on the polymeric side chain was detected by solid state NMR spectroscopy performed on a (15)N-polymer enriched gel. The calculations and experimental data suggest a central role for the gel solvent molecule as a catalytic agent and proton transfer vehicle. The process suggested by DFT modeling may have relevance for photosensitive devices in part due to the fact that we have been able to show that long-lived paramagnetism may be included among the inducible properties of soft polymer gels.
- Published
- 2010
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40. Density functional study of the proton transfer effect on vibrations of strong (short) intermolecular O-H...N/O-...H-N+ hydrogen bonds in aprotic solvents.
- Author
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Kong S, Shenderovich IG, and Vener MV
- Subjects
- Hydrogen Bonding, Solvents chemistry, Vibration, Benzoic Acid chemistry, Computer Simulation, Phenols chemistry, Protons, Pyridines chemistry
- Abstract
The structure and spectroscopic properties of the 1:1 complexes of substituted pyridines with benzoic acid and phenol derivatives in aprotic solvents are studied using B3LYP functional combined with the polarizable continuum model approximation. Two extreme structures are investigated: the state without (HB) and with proton transfer (PT). In the presence of an external electric field the O...N distance is contracted and the PT state does appear. The PT state of both the pyridine-benzoic and the pyridine-phenol complexes displays the only IR-active band in the 2800-1800 frequency region, which is located around 2000 cm(-1). However, the nature of the band is different for these two complexes. In the pyridine-benzoic acid complex it is practically a pure stretching vibration of the HN(+) group, while in the pyridine-phenol complex it is the mixed vibration of the bridging proton. A specific feature of the PT state in the pyridine-phenol complex is an IR-intensive band near 600 cm(-1), associated with the asymmetric stretching vibrations of the O(-)...HN(+) fragment. Its intensity is reciprocally proportional to the O...N distance. The appearance of this band provides an efficient criterion to differentiate between the HB and PT states of the 1:1 complexes of phenols with pyridines in aprotic solvents.
- Published
- 2010
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41. Symmetrization of cationic hydrogen bridges of protonated sponges induced by solvent and counteranion interactions as revealed by NMR spectroscopy.
- Author
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Pietrzak M, Wehling JP, Kong S, Tolstoy PM, Shenderovich IG, López C, Claramunt RM, Elguero J, Denisov GS, and Limbach HH
- Subjects
- 1-Naphthylamine chemistry, Crystallography, X-Ray, Hydrogen Bonding, Magnetic Resonance Spectroscopy methods, Models, Molecular, Porosity, Protons, Solvents chemistry, 1-Naphthylamine analogs & derivatives, Cations chemistry, Hydrogen chemistry
- Abstract
The properties of the intramolecular hydrogen bonds of doubly (15)N-labeled protonated sponges of the 1,8-bis(dimethylamino)naphthalene (DMANH(+)) type have been studied as a function of the solvent, counteranion, and temperature using low-temperature NMR spectroscopy. Information about the hydrogen-bond symmetries was obtained by the analysis of the chemical shifts delta(H) and delta(N) and the scalar coupling constants J(N,N), J(N,H), J(H,N) of the (15)NH(15)N hydrogen bonds. Whereas the individual couplings J(N,H) and J(H,N) were averaged by a fast intramolecular proton tautomerism between two forms, it is shown that the sum |J(N,H)+J(H,N)| generally represents a measure of the hydrogen-bond strength in a similar way to delta(H) and J(N,N). The NMR spectroscopic parameters of DMANH(+) and of 4-nitro-DMANH(+) are independent of the anion in the case of CD(3)CN, which indicates ion-pair dissociation in this solvent. By contrast, studies using CD(2)Cl(2), [D(8)]toluene as well as the freon mixture CDF(3)/CDF(2)Cl, which is liquid down to 100 K, revealed an influence of temperature and of the counteranions. Whereas a small counteranion such as trifluoroacetate perturbed the hydrogen bond, the large noncoordinating anion tetrakis[3,5-bis(trifluoromethyl)phenyl]borate B[{C(6)H(3)(CF(3))(2)}(4)](-) (BARF(-)), which exhibits a delocalized charge, made the hydrogen bond more symmetric. Lowering the temperature led to a similar symmetrization, an effect that is discussed in terms of solvent ordering at low temperature and differential solvent order/disorder at high temperatures. By contrast, toluene molecules that are ordered around the cation led to typical high-field shifts of the hydrogen-bonded proton as well as of those bound to carbon, an effect that is absent in the case of neutral NHN chelates.
- Published
- 2010
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42. H/D isotope effects on NMR chemical shifts of nuclei involved in a hydrogen bridge of hydrogen isocyanide complexes with fluoride anion.
- Author
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Golubev NS, Detering C, Smirnov SN, Shenderovich IG, Denisov GS, Limbach HH, and Tolstoy PM
- Subjects
- Anions, Hydrogen Bonding, Magnetic Resonance Spectroscopy, Cyanates chemistry, Fluorides chemistry
- Abstract
(1)H, (2)H, (19)F and (15)N NMR spectra of a strongly hydrogen-bonded anionic cluster, CNHF(-), as an ion pair with a tetrabutylammonium cation dissolved in CDF(3)-CDF(2)Cl mixture were recorded in the slow exchange regime at temperatures down to 110 K. The fine structure due to spin-spin coupling of all nuclei involved in the hydrogen bridge was resolved. H/D isotope effects on the chemical shifts were measured. The results were compared with those obtained earlier for a similar anion, FHF(-), and interpreted via ab initio calculations of magnetic shielding as functions of internal vibrational coordinates, namely an anti-symmetric proton stretching and a doubly-degenerate bending. The values of primary and secondary isotope effects on NMR chemical shifts were estimated using a power expansion of the shielding surface as a function of vibrational coordinates. A positive primary isotope effect was explained as a result of the decrease of the hydron stretching amplitude upon deuteration. We show that the proton shielding surface has a minimum close to the equilibrium geometry of the CNHF(-) anion, leading to the positive primary H/D isotope effect in a rather asymmetric hydrogen bond. We conclude that caution should be used when making geometric estimations on the basis of NMR data, since the shapes of the shielding functions of the internal vibrational coordinates can be rather exclusive for each complex.
- Published
- 2009
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43. A DFT and AIM analysis of the spin-spin couplings across the hydrogen bond in the 2-fluorobenzamide and related compounds.
- Author
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Alkorta I, Elguero J, Limbach HH, Shenderovich IG, and Winkler T
- Subjects
- Hydrogen Bonding, Mathematical Computing, Benzamides chemistry, Solvents chemistry
- Abstract
In 1975 a large number of coupling constants were measured in 2-fluorobenzamide labeled with (15)N. Some of them were assigned to couplings through intramolecular N-H...F hydrogen bonds (HBs). These couplings change dramatically when CDCl(3) is replaced by DMSO-d(6). In this theoretical paper we provide density functional theory (DFT) calculations that justify the existence of a weak HB in the absence of solvent, while solvents that act as HB acceptors break down the intramolecular hydrogen bond (IMHB) of 2-fluorobenzamide. Atoms in molecules (AIM) analyses and Steiner-Limbach plots were used to analyze the structure of the compounds., (2009 John Wiley & Sons, Ltd.)
- Published
- 2009
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44. Solid-state NMR studies of aminocarboxylic salt bridges in L-lysine modified cellulose.
- Author
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Manríquez R, López-Dellamary FA, Frydel J, Emmler T, Breitzke H, Buntkowsky G, Limbach HH, and Shenderovich IG
- Subjects
- Amines, Carboxylic Acids, Cellulose analogs & derivatives, Cellulose isolation & purification, Dimerization, Magnetic Resonance Spectroscopy methods, Models, Molecular, Molecular Conformation, Picea, Salts, Cellulose chemistry, Lysine chemistry
- Abstract
LysCel is a cellulose-based material in which l-lysine molecules are grafted with their amino side chains to the cellulose hydroxyl groups. This modification increases considerably the mechanical strength and resistance of cellulosic structures toward water. It has been attributed to the formation of double salt bridges between lysine aminocarboxyl groups in the zwitterionic state. In order to characterize this unusual structure, we have performed high-resolution solid-state (15)N and (13)C CPMAS NMR experiments on LysCel samples labeled with (15)N in the alpha-position or epsilon-position. Furthermore, (13)C-(15)N REDOR experiments were performed on LysCel where half of the aminocarboxyl groups were labeled in 1-position with 13C and the other half in alpha-position with (15)N. The comparison with the 13C and 15N chemical shifts of l-leucine lyophilized at different pH shows that the aminocarboxyl groups of LysCel are indeed zwitterionic. The REDOR experiments indicate distances of about 3.5 A between the carboxyl carbon and the nitrogen atoms of different aminocarboxyl groups, indicating that the latter are in close contact with each other. However, the data are not compatible with isolated aminocarboxyl dimers but indicate the assembly of zwitterionic aminocarboxyl dimers either in a flat ribbon or as tetramers, exhibiting similar intra- and interdimer (13)C...(15)N distances. This interaction of several aminocarboxyl groups is responsible for the zwitterionic state, in contrast to the gas phase, where amino acid dimers exhibiting two OHN hydrogen bonds are neutral.
- Published
- 2009
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45. NMR provides checklist of generic properties for atomic-scale models of periodic mesoporous silicas.
- Author
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Shenderovich IG, Mauder D, Akcakayiran D, Buntkowsky G, Limbach HH, and Findenegg GH
- Subjects
- Porosity, Silanes chemistry, Surface Properties, Magnetic Resonance Spectroscopy methods, Models, Chemical, Models, Molecular, Silicon Dioxide chemistry
- Abstract
MCM-41 and SBA-15 silicas were studied by (29)Si solid-state NMR and (15)N NMR in the presence of (15)N-pyridine with the aim to formulate generic structural parameters that may be used as a checklist for atomic-scale structural models of this class of ordered mesoporous materials. High-quality MCM-41 silica constitutes quasi-ideal arrays of uniform-size pores with thin pore walls, while SBA-15 silica has thicker pore walls with framework and surface defects. The numbers of silanol (Q(3)) and silicate (Q(4)) groups were found to be in the ratio of about 1:3 for MCM-41 and about 1:4 for our SBA-15 materials. Combined with the earlier finding that the density of surface silanol groups is about three per nm(2) in MCM-41 (Shenderovich, et al. J. Phys. Chem. B 2003, 107, 11924) this allows us to discriminate between different atomic-scale models of these materials. Neither tridymite nor edingtonite meet both of these requirements. On the basis of the hexagonal pore shape model, the experimental Q(3):Q(4) ratio yields a wall thickness of about 0.95 nm for MCM-41 silica, corresponding to the width of ca. four silica tetrahedra. The arrangement of Q(3) groups at the silica surfaces was analyzed using postsynthesis surface functionalization. It was found that the number of covalent bonds to the surface formed by the functional reagents is affected by the surface morphology. It is concluded that for high-quality MCM-41 silicas the distance between neighboring surface silanol groups is greater than 0.5 nm. As a result, di- and tripodical reagents like (CH(3))(2)Si(OH)(2) and CH(3)Si(OH)(3) can form only one covalent bond to the surface. The residual hydroxyl groups of surface-bonded functional reagents either remain free or interact with other reagent molecules. Accordingly, the number of surface silanol groups at a given MCM-41 or SBA-15 silica may not decrease but increase after treatment with CH(3)Si(OH)(3) reagent. On the other hand, nearly all surface silanol groups could be functionalized when HN(Si(CH(3))(3))(2) was used.
- Published
- 2007
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46. NMR localization of protons in critical enzyme hydrogen bonds.
- Author
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Sharif S, Fogle E, Toney MD, Denisov GS, Shenderovich IG, Buntkowsky G, Tolstoy PM, Huot MC, and Limbach HH
- Subjects
- Binding Sites, Escherichia coli enzymology, Hydrogen Bonding, Molecular Structure, Nuclear Magnetic Resonance, Biomolecular, Aspartate Aminotransferases chemistry, Aspartate Aminotransferases metabolism, Protons
- Published
- 2007
- Full Text
- View/download PDF
47. Nuclear magnetic resonance and ab initio studies of small complexes formed between water and pyridine derivatives in solid and liquid phases.
- Author
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Sharif S, Shenderovich IG, Gonzalez L, Denisov GS, Silverman DN, and Limbach HH
- Subjects
- Carbonic Anhydrases metabolism, Molecular Structure, Phase Transition, Carbonic Anhydrases chemistry, Magnetic Resonance Spectroscopy methods, Pyridines chemistry, Water chemistry
- Abstract
The structure and geometry of hydrogen-bonded complexes formed between heterocyclic bases, namely, pyridine and 2,4,6-trimethylpyridine (collidine), and water were experimentally studied by NMR spectroscopy in frozen phase and in highly polar aprotic liquefied freon mixtures and theoretically modeled for gas phase. Hydrogen-bonded species in frozen heterocycle-water mixtures were characterized experimentally using 15N NMR. When base was in excess, one water molecule was symmetrically bonded to two heterocyclic molecules. This complex was characterized by the rHN distances of 1.82 Angstrom for pyridine and 1.92 Angstrom for collidine. The proton-donating ability of water in such complexes was affected by an anticooperative interaction between the two coupled hydrogen bonds and exhibited an apparent pK(a) value of about 6.0. When water was in excess, it formed water clusters hydrogen bonded to base. Theoretical analysis of binding energies of small model heterocycle-water clusters indicated that water in such clusters was oriented as a chain. The NMR estimated rHN distances in these species were 1.69 Angstrom for pyridine and 1.64 Angstrom for collidine. Here, the proton-donating ability of the hydroxyl group bonded to the heterocycle was affected by a mutual cooperative interaction with other water molecules in the chain and became comparable to the proton-donating ability of a fictitious acid, exhibiting an apparent pK(a) value of about 4.9. This value seems to depend only slightly on the length of the water chain and on the presence of another base at the other end of the chain if more than two water molecules are involved. Thus, the proton-donating ability of the outer hydroxyl groups of biologically relevant water bridges should be comparable to the proton-donating ability of a fictitious acid exhibiting a pK(a) value of about 4.9 in water. Driven by the mixing entropy, monomeric water presented in the aprotic freonic mixtures above 170 K but completely precipitated upon further cooling. Traces of water could be suspended in the mixtures down to 130 K in the presence of about 20-fold excess of heterocyclic bases. The obtained experimental data indicated that at these conditions water trended to form the symmetric 2:1 heterocycle-water complexes, whose bridge protons resonated around 6.7 ppm.
- Published
- 2007
- Full Text
- View/download PDF
48. Geometrical features of hydrogen bonded complexes involving sterically hindered pyridines.
- Author
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Andreeva DV, Ip B, Gurinov AA, Tolstoy PM, Denisov GS, Shenderovich IG, and Limbach HH
- Abstract
The ability of strongly sterically hindered pyridines to form hydrogen bonded complexes was inspected using low-temperature 1H and 15N NMR spectroscopy in a liquefied Freon mixture. The proton acceptors were 2,6-di(tert-butyl)-4-methyl- and 2,6-di(tert-butyl)-4-diethylaminopyridine; the proton donors were hydrogen tetrafluoroborate, hydrogen chloride, and hydrogen fluoride. The presence of the tert-butyl groups in the ortho positions dramatically perturbed the geometry of the forming hydrogen bonds. As revealed by experiment, the studied crowded pyridines could form hydrogen bonded complexes with proton donors exclusively through their protonation. Even the strongest small proton acceptor, anion F-, could not be received by the protonated base. Instead, the simplest hydrogen bonded complex involved the [FHF]- anion. This complex was characterized by the shortest possible N...F distance of about 2.8 A. Because the ortho tert-butyl groups did not prevent the hydrogen bond interaction between the protonated center and the anion completely, an increase of the pyridine basicity caused a further shortening of the N-H distance and a weakening of the hydrogen bond to the counterion.
- Published
- 2006
- Full Text
- View/download PDF
49. NMR parameters and geometries of OHN and ODN hydrogen bonds of pyridine-acid complexes.
- Author
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Limbach HH, Pietrzak M, Sharif S, Tolstoy PM, Shenderovich IG, Smirnov SN, Golubev NS, and Denisov GS
- Subjects
- Hydrogen Bonding, Magnetic Resonance Spectroscopy, Molecular Structure, Vibration, Acids chemistry, Deuterium chemistry, Hydrogen chemistry, Nitrogen chemistry, Oxygen chemistry, Pyridines chemistry
- Abstract
In this paper, equations are proposed which relate various NMR parameters of OHN hydrogen-bonded pyridine-acid complexes to their bond valences which are in turn correlated with their hydrogen-bond geometries. As the valence bond model is strictly valid only for weak hydrogen bonds appropriate empirical correction factors are proposed which take into account anharmonic zero-point energy vibrations. The correction factors are different for OHN and ODN hydrogen bonds and depend on whether a double or a single well potential is realized in the strong hydrogen-bond regime. One correction factor was determined from the known experimental structure of a very strong OHN hydrogen bond between pentachlorophenol and 4-methylpyridine, determined by the neutron diffraction method. The remaining correction factors which allow one also to describe H/D isotope effects on the NMR parameters and geometries of OHN hydrogen bond were determined by analysing the NMR parameters of the series of protonated and deuterated pyridine- and collidine-acid complexes. The method may be used in the future to establish hydrogen-bond geometries in biologically relevant functional OHN hydrogen bonds.
- Published
- 2004
- Full Text
- View/download PDF
50. Low-temperature NMR studies of the structure and dynamics of a novel series of acid-base complexes of HF with collidine exhibiting scalar couplings across hydrogen bonds.
- Author
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Shenderovich IG, Tolstoy PM, Golubev NS, Smirnov SN, Denisov GS, and Limbach HH
- Abstract
The low-temperature (1)H, (19)F, and (15)N NMR spectra of mixtures of collidine-(15)N (2,4,6-trimethylpyridine-(15)N, Col) with HF have been measured using CDF(3)/CDF(2)Cl as a solvent in the temperature range 94-170 K. Below 140 K, the slow proton and hydrogen bond exchange regime is reached where four hydrogen-bonded complexes between collidine and HF with the compositions 1:1, 2:3, 1:2, and 1:3 could be observed and assigned. For these complexes, chemical shifts and scalar coupling constants across the (19)F(1)H(19)F and (19)F(1)H(15)N hydrogen bridges have been measured which allowed us to determine the chemical composition of the complexes. The simplest complex, collidine hydrofluoride ColHF, is characterized at low temperatures by a structure intermediate between a molecular and a zwitterionic complex. Its NMR parameters depend strongly on temperature and the polarity of the solvent. The 2:3 complex [ColHFHCol](+)[FHF](-) is a contact ion pair. Collidinium hydrogen difluoride [ColH](+)[FHF](-) is an ionic salt exhibiting a strong hydrogen bond between collidinium and the [FHF](-) anion. In this complex, the anion [FHF](-) is subject to a fast reorientation rendering both fluorine atoms equivalent in the NMR time scale with an activation energy of about 5 kcal mol(-)(1) for the reorientation. Finally, collidinium dihydrogen trifluoride [ColH](+)[F(HF)(2)](-) is an ionic pair exhibiting one FHN and two FHF hydrogen bonds. Together with the [F(HF)(n)()](-) clusters studied previously (Shenderovich et al., Phys. Chem. Chem. Phys. 2002, 4, 5488), the new complexes represent an interesting model system where the evolution of scalar couplings between the heavy atoms and between the proton and the heavy atoms of hydrogen bonds can be studied. As in the related FHF case, we observe also for the FHN case a sign change of the coupling constant (1)J(FH) when the F.H distance is increased and the proton shifted to nitrogen. When the sign change occurs, that is, (1)J(FH) = 0, the heavy atom coupling constant (2)J(FN) remains very large, of the order of 95 Hz. Using the valence bond order model and hydrogen bond correlations, we describe the dependence of the hydrogen bond coupling constants, of hydrogen bond chemical shifts, and of some H/D isotope effects on the latter as a function of the hydrogen bond geometries.
- Published
- 2003
- Full Text
- View/download PDF
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