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Increasing surface air temperatures and human influences (e.g., agriculture, livestock grazing, tourism) are altering lacustrine ecosystems in the South American Andean páramo, and these influences are evident in changes in the diatom-species composition in sediment cores from the region that span the last ~ 150 years. Existing studies are limited by their short temporal scales and limited spatial extent. We analyzed two sediment cores spanning the last two millennia from the northern (Laguna Piñan) and southern (Laguna Fondococha) Andean páramo of Ecuador to provide a longer-term perspective on lake dynamics. Both lakes show shifts in the dominant diatoms through time. Fondococha diatoms shifted in dominance between two Aulacoseira species and in the planktic to benthic ratio, and these shifts are interpreted as evidence of changing lake level. The inferred shifts are corroborated by changes in sediment geochemistry. Piñan shows a directional shift in the diatom assemblage over the period of the record, from benthic diatoms tolerant of high dissolved organic carbon (DOC), low pH, and low nutrients, to an assemblage characteristic of lower DOC, higher pH, nutrients and lake levels. Shifts in Piñan’s diatoms are correlated with tephra layers in the sediment, suggesting that local volcanic deposition may have been responsible for altering the catchment and lake geochemistry. This is supported by relatively high δ13C values in organic matter associated with tephra layers, which become more negative up-section. Our study suggests that remote lakes in spatially heterogenous montane regions act as sentinels of different facets of environmental change and provide insights into Andean ecosystem responses to environmental perturbations. info:eu-repo/semantics/acceptedVersion

Holocene climate in the high tropical Andes was characterized by both gradual and abrupt changes, which disrupted the hydrological cycle and impacted landscapes and societies. High-resolution paleoenvironmental records are essential to contextualize archaeological data and to evaluate the sociopolitical response of ancient societies to environmental variability. Middle-to-Late Holocene water levels in Lake Titicaca were reevaluated through a transfer function model based on measurements of organic carbon stable isotopes, combined with high-resolution profiles of other geochemical variables and paleoshoreline indicators. Our reconstruction indicates that following a prolonged low stand during the Middle Holocene (4000 to 2400 BCE), lake level rose rapidly ~15 m by 1800 BCE, and then increased another 3 to 6 m in a series of steps, attaining the highest values after ~1600 CE. The largest lake-level increases coincided with major sociopolitical changes reported by archaeologists. In particular, at the end of the Formative Period (500 CE), a major lake-level rise inundated large shoreline areas and forced populations to migrate to higher elevation, likely contributing to the emergence of the Tiwanaku culture., Proceedings of the National Academy of Sciences of the United States of America, 120 (2), ISSN:0027-8424, ISSN:1091-6490

Investigations of how past human societies managed during times of major climate change can inform our understanding of potential human responses to ongoing environmental change. In this study, we evaluate the impact of environmental variation on human communities over the last four millennia in the southern Lake Titicaca basin of the Andes, known as Lake Winaymarka. Refined paleoenvironmental reconstructions from new diatom-based reconstructions of lake level together with archaeological evidence of animal and plant resource use from sites on the Taraco Peninsula, Bolivia, reveal frequent climate and lake-level changes within major cultural phases. We posit that climate fluctuations alone do not explain major past social and political transformations but instead that a highly dynamic environment contributed to the development of flexible and diverse subsistence practices by the communities in the Titicaca Basin.

Determining the mechanisms of community assembly forms the foundation of biogeography and community ecology. Studies of the biodiversity and distribution of Neotropical macro-organisms have revealed the roles of environmental, spatial, and historical factors in structuring communities at different spatial and temporal scales. The role of these factors for species and communities of microorganisms are still poorly understood. Diatoms are a very species-rich group of algae, widely distributed, and sensitive to environmental variation because of their position at the base of aquatic food webs. Here, we present the Tropical South American Diatom Database (TSADB), which contains geographical and ecological information on diatom species across lentic and lotic environments, including predictors that describe local (limnological) and regional (geo-climatic) factors. The open access database can be used to ask fundamental questions in macroecology, including testing foundational theories of metacommunity ecology and biogeography, and evaluating the sensitivity of species and communities to the rapid environmental changes characteristic of tropical regions. The TSADB includes diatom taxa from 437 samples from 326 sites distributed across 26 regions (0–5,070 m a.s.l, and between 8°N–35°S; 58–90°W). In addition, long-term, diatom-based paleolimnological records are presented as a complementary tool for identifying geographically well-covered regions with modern and palaeo-datasets. We describe the TSADB structure and functionality, together with the R codes for data manipulation and visualization. Each of the 26 study regions is represented by three data matrices: sampling site information, environmental variables (limnology, climate, and landscape), and diatom community data (relative abundance or presence/absence). Access to data and future additions is through publicly available repositories and a guide to contributors, respectively. Thus, it offers ample opportunities to complement existing databases on diatoms, allowing optimal usage of TSADB by scientists including diatomists, limnologists, and aquatic ecologists. info:eu-repo/semantics/acceptedVersion

Chraibi VLS, Fritz SC. 2020. Assessing the hierarchy of long-term environmental controls on diatom communities of Yellowstone National Park using lacustrine sediment records. Lake Reserv Manage. 36...

Mercury (Hg) records in sediment archives inform past patterns of Hg deposition and the anthropogenic contribution to global Hg cycling. Natural climate variations complicate the interpretation of past Hg accumulation rates (HgARs), warranting additional research. Here, we investigated Hg stable isotopes in a ca. 8k year-long sediment core of Lake Titicaca and combined isotopic data with organic biomarkers and biogeochemical measurements. A wet period in the early Holocene (8000–7300 BP) induced strong watershed erosion, leading to a high HgAR (20.2 ± 6.9 μg m-2 year-1), which exceeded the 20th century HgAR (8.4 ± 1.0 μg m-2 year-1). Geogenic Hg input dominated during the early Holocene (fgeog = 79%) and played a minor role during the mid- to late Holocene (4500 BP to present; fgeog = 20%) when atmospheric Hg deposition dominated. Sediment Δ200Hg values and the absence of terrestrial lignin biomarkers suggest that direct lake uptake of atmospheric Hg(0), and subsequent algal scavenging of lake Hg, represented an important atmospheric deposition pathway (42%) during the mid- to late Holocene. During wet episodes of the late Holocene (2400 BP to present), atmospheric Hg(II) deposition was the dominant source of lake sediment Hg (up to 82%). Sediment Δ199Hg values suggest that photochemical reduction and re-emission of Hg(0) occurred from the lake surface. Hg stable isotopes show promise as proxies for understanding the history of Hg sources and transformations and help to disentangle anthropogenic and climate factors influencing HgAR observed in sediment archives., ACS Earth and Space Chemistry, 6 (2), ISSN:2472-3452

The study of eukaryotic extremophiles is relatively novel, and, therefore, documentation of the structure and function of micro-organisms in continental hydrothermal systems globally is limited. In...

AIM: Lakes in the Ecuadorean Andes span different altitudinal and climatic regions, from inter Andean plateau to the high‐elevation paramo, which differ in their historical evolution in the several centuries since the pioneering Humboldt expeditions. Here, we evaluate temporal and spatial patterns of change in diatom assemblages between historical (palaeolimnological) and modern times. LOCATION: Ecuadorean Andes METHODS: We compared historical (pre‐1850) and modern (2017) diatom assemblages from 21 lakes and determined the relative role of environmental (water chemistry and climate) and spatial factors (distance‐based Moran's eigenvectors maps) on both assemblages using non‐metric multidimensional scaling (NMDS) with environmental fitting. In addition, we used redundancy analysis (RDA) with variance partitioning to estimate the historical (measured using downcore assemblage composition) effects on modern diatom assemblages and identified diatom species that contributed most to dissimilarity between the two times. RESULTS: Diatom changes between the two time points were limited across the group of lakes, as indicated by the NMDS ordination. Variance partitioning indicated that modern diatom assemblages were affected by environmental and spatial effects, but with non‐significant effects of past diatom species composition. Ordination results showed that variables related to elevation and water chemistry affected both modern and historical diatom assemblages. Diatom species with the best fit on NMDS axes (i.e. >70%) were influenced by elevation and climatic variables. The most distinctive change between the two time periods was the higher relative abundance of planktic diatom species in top‐core assemblages of some lakes, but in a highly variable fashion across gradients of increased elevation and water depth. MAIN CONCLUSIONS: Landscape palaeolimnological analyses of varied Ecuadorean Andean lakes demonstrate both environmental and spatial controls on diatom metacommunities. The multi‐faceted ecological control of the altitudinal gradient on both historic and contemporary diatom assemblages suggests species sorting and dispersal constraints operating at centennial time‐scale. Although a few individual lakes show substantive change between the 1850s and today, the majority of lakes do not, and the analysis suggests the resilience of lakes at a regional scale. We emphasize the potential of diatom palaeolimnological approaches in biogeography to test ecologically relevant hypotheses of the mechanisms driving recent limnological change in high‐elevation tropical lakes.

International audience; Copper, silver, and gold exploitation has been a foundation of economic and socio-cultural development of Andean societies, at least for the last three millennia. The main centers of pre-colonial metallurgy are well-known from archaeological artifacts, but temporal gaps inherent in this record handicap a finer understanding of the modalities of ore exploitation by succeeding civilizations. A continuous record over time of trace metals emitted during ore smelting operations make lake sediments excellent candidates to fill those gaps.Two millennia of metallurgy were reconstructed from atmospherically derived metals together with lead (Pb) isotope ratios in two dated sediment cores from Lake Titicaca. The first evidence for metallurgy is found during the apogee of the Tiwanaku state (AD 800 to 1150), with a higher copper (Cu) accumulation that can be attributed to the smelting of local Cu ores, based on Pb isotopic fingerprinting. During the Late Intermediate Period (AD 1150 to 1450), recorded peaks in metal deposition that persisted for ∼ twenty years show that mining activities were intensive but discontinuous. Pb isotope ratios suggest diversified extractive activities, mainly located in the southern part of the central Altiplano. Finally, the most intense mining epoch began during the Inca Empire (ca. AD 1500) and lasted until the end of the Colonial Period (AD 1830), with unprecedented metal deposition over this interval.Pb isotope fingerprinting shows that mining operations occurred mainly in the Lake Titicaca and Potosi areas and were responsible for metal emissions recorded in the entire Altiplano, as evidenced by other studies.

This research has been supported by the Directorate for Geosciences of the National Science Foundation (grant nos. AGS-1602105 and AGS-1903548)., We thank the USGS John Wesley Powell Center for Analysis and Synthesis, which hosted a meeting that led to this synthesis effort. Any use of trade, firm, or product names is for descriptive purposes only and does not imply endorsement by the US government. We thank the original data generators who made their data available for reuse, and we acknowledge the data repositories for safeguarding these assets., Holocene climate reconstructions are useful for understanding the diverse features and spatial heterogeneity of past and future climate change. Here we present a database of western North American Holocene paleoclimate records. The database gathers paleoclimate time series from 184 terrestrial and marine sites, including 381 individual proxy records. The records span at least 4000 of the last 12 000 years (median duration of 10 725 years) and have been screened for resolution, chronologic control, and climate sensitivity. Records were included that reflect temperature, hydroclimate, or circulation features. The database is shared in the machine readable Linked Paleo Data (LiPD) format and includes geochronologic data for generating site-level time-uncertain ensembles. This publicly accessible and curated collection of proxy paleoclimate records will have wide research applications, including, for example, investigations of the primary features of oceanatmospheric circulation along the eastern margin of the North Pacific and the latitudinal response of climate to orbital changes. The database is available for download at https://doi.org/10.6084/m9.figshare.12863843.v1 (Routson and McKay, 2020)., National Science Foundation (NSF) AGS-1602105 AGS-1903548

Holocene climate reconstructions are useful for understanding the diverse features and spatial heterogeneity of past and future climate change. Here we present a database of western North American Holocene paleoclimate records. The database gathers paleoclimate time series from 209 terrestrial and marine sites, including 382 individual proxy records. The records span at least 4000 of the last 12 000 years (median duration = 10 603 years), and have been screened for resolution, chronologic control, and climate sensitivity. Records were included that reflect temperature, hydroclimate, or circulation features. The database is shared in the machine readable Linked Paleo Data (LiPD) format and includes geochronologic data for generating site-level time-uncertain ensembles. This publicly accessible and curated collection of proxy paleoclimate records will have wide research applications, including, for example, investigations of the primary features of ocean-atmospheric circulation along the eastern margin of the North Pacific and the latitudinal response of climate to orbital changes. The database is available for download at: https://doi.org/10.6084/m9.figshare.12863843.v1 (Routson and McKay, 2020).

High-elevation tropical lakes are excellent sentinels of global change impacts, such as climate warming, land-use change, and atmospheric deposition. These effects are often correlated with temporal and spatial beta diversity patterns, with some local communities contributing more than others, a phenomenon known as local contribution to beta diversity (LCBD) or ecological uniqueness. Microorganisms, such as diatoms, are considered whole-ecosystem indicators, but little is known about their sensitivity and specificity in beta diversity studies mostly because of the lack of large spatial and temporal datasets. To fill this gap, we used a tropical South American diatom database comprising modern (144 lakes) and paleolimnological (6 sediment cores) observations to quantify drivers of spatial and temporal beta diversity and evaluated implications for environmental change and regional biodiversity. We used methods of beta diversity partitioning (replacement and richness components) by determining contributions of local sites to these components (LCBDrepl and LCBDrich), and studied how they are related to environmental, geological, and historical human variables using Generalized Additive Models (GAM). Beta replacement time series were also analyzed with GAM to test whether there is widespread biotic homogenization across the tropical Andes. Modern lake ecological uniqueness was jointly explained by limnological (pH), climatic (mean annual precipitation), and historical human density. Local lake (conductivity) and regional geodiversity variables (terrain ruggedness, soil variability) were inversely correlated to replacement and richness components of LCBD, suggesting that not all lakes contributing to broad-scale diversity are targets for conservation actions. Over millennial time scales, decomposing temporal trends of beta diversity components showed different trajectories of lake diatom diversity as response of environmental change: i) increased hydroclimatic variability (as inferred by decreased temperature seasonality) mediating higher contribution of richness to local beta diversity patterns ca. 1000 years ago in Ecuador Andean lakes and ii) lake-specific temporal beta diversity trends for the last ca. 200 years, indicating that biotic homogenization is not widespread across the tropical Andes. Our approach for unifying diatom ecology, metacommunity, and paleolimnology can facilitate the understanding of future responses of tropical Andean lakes to global change impacts.

Various paleoclimatic records have been used to reconstruct the hydrologic history of the Altiplano, relating this history to past variability of the South American summer monsoon. Prior studies of the southern Altiplano, the location of the world's largest salt flat, the Salar de Uyuni, and its neighbor, the Salar de Coipasa, generally agree in their reconstructions of the climate history of the past ∼24 ka. Some studies, however, have highly divergent climatic records and interpretations of earlier periods. In this study, lake-level variation was reconstructed from a ∼14-m-long sediment core from the Salar de Coipasa. These sediments span the last ∼40 ka. Lacustrine sediment accumulation was apparently continuous in the basin from ∼40 to 6 ka, with dry or very shallow conditions afterward. The fossil diatom stratigraphy and geochemical data (δ 13 C, δ 15 N, %Ca, C/N) indicate fluctuations in lake level from shallow to moderately deep, with the deepest conditions correlative with the Heinrich-1 and Younger Dryas events. The stratigraphy shows a continuous lake of variable depth and salinity during the last glacial maximum and latter stages of Marine Oxygen Isotope Stage 3 and is consistent with environmental inferences and the original chronology of a drill core from Salar de Uyuni.

Understanding and managing the responses of natural systems to climate change requires knowing whether recent changes in ecosystem structure and function are within the bounds of natural variation or whether the systems are entering new states that are unprecedented. Several recent studies of the fossil diatom record of the last ~ 150 years in Andean lakes have shown changes in diatom species composition that suggest changes in lake thermal structure in response to regional climate warming. Yet these paleolimnological records are only a few hundred years in length, so it is unclear whether the systems have entered new states, with potentially severe consequences for ecosystem structure and function, or whether current trends are within the natural variability of the systems. Here, we use a recently compiled diatom database from tropical South America to explore the regional distribution and ecological controls of selected planktic diatom taxa that are associated with warming and changes in the lake thermal structure. We also review published Andean stratigraphic records that span thousands of years to characterize the long-term dynamics of relevant planktic species in response to past climate change. The contemporary data show that many planktic taxa have broad latitudinal and elevational distributions. The distributions of several taxa are correlated with surface water temperature, but most also are correlated with pH and/or conductivity. A review of existing stratigraphic data from Andean lakes demonstrates that rapid changes in diatom abundance, including abrupt increases followed by decades to centuries of near extirpation, are a common mode of population variation for some planktic taxa. Yet the majority of these published paleolimnological investigations are of lakes that are larger and differ in nutrient status and conductivity from the small dilute systems where recent species shifts have been observed. We propose that assessing the resilience of contemporary diatom communities and, by inference, lake ecosystems is best done by generating new records from Andean lakes of varied size and chemistry that span a millennium or more and hence a broader spectrum of climate conditions, coupled with new ecological and biogeographic studies that build upon ongoing research programs in the tropical Andes.

A composite 11.82 m-long (9876–-67 cal yr BP) sediment record from Yellowstone Lake, Wyoming was analyzed using a robust set of biological and geochemical proxies to investigate the paleoenvironmental evolution of the lake and its catchment in response to long-term climate forcing. Oxygen isotopes from diatom frustules were analyzed to reconstruct Holocene climate changes, and pollen, charcoal, diatom assemblages, and biogenic silica provided information on terrestrial and limnological responses. The long-term trends recorded in the terrestrial and limnic ecosystems over the last 9800 years reflect the influence of changes in the amplification of the seasonal cycle of insolation on regional climate. The early Holocene (9880–6700 cal yr BP) summer insolation maximum and strengthening of the northeastern Pacific subtropical high-pressure system created warm dry conditions and decreasing summer insolation in the middle (6700–3000 cal yr BP) and late (3000–-67 cal yr BP) Holocene resulted in progressively cooler, wetter conditions. Submillenial climate variation is also apparent, with a wetter/cooler interval between 7000 and 6800 cal yr BP and warmer and/or drier conditions from 4500 to 3000 cal yr BP and at ca. 1100 cal yr BP. These data show that the Yellowstone Lake basin had a climate history typical of a summer-dry region, which helps to better define the spatial variability of Holocene climate in the Greater Yellowstone Ecosystem.

The Yellowstone National Park ecosystem is a product of dynamic earth system processes, which have been of interest to scientists and the public since the park's discovery. Here, we outline the history of two successive generations of scientific collaboration in Yellowstone National Park. Early collaboration was spurred by the discovery of an unknown diatom species found in Yellowstone Lake. This prompted the first coring project in 1992 that described the morphological evolution of that species and the paleoenvironmental conditions during which it evolved. About twenty years later, the group was brought together again, with the addition of early career scientists, for a coring project focused on hydrothermal activity in the Yellowstone Lake basin. We discuss the ongoing research and analyses of core material, and conclude with the benefits of working in multigenerational interdisciplinary research groups. (Less)

High levels of biodiversity and endemism in ancient lakes have motivated research on evolutionary processes in these systems. Drill-core records from Lake Titicaca (Bolivia, Peru), an ancient lake in the high-elevation Altiplano, record the history of climate, landscape dynamics, and diatom evolution. That record was used to examine the patterns and drivers of morphological evolution of an endemic species complex of diatoms in the lake, theCyclostephanos andinuscomplex. In an attempt to delineate species within the complex based on morphology, no discernible evidence was found for species separation based on an ordination analysis of multiple characters, but multiple populations were detected based on the distribution of valve size in individual samples. Likelihood modeling of phyletic evolution showed that size evolved through punctuated change. Correlation of size trends with environmental variables indicates thatC. andinussize responded to regional environmental change driven by global processes that influenced Lake Titicaca by affecting lake level and thermal stratification.

Uplift of the Altiplano in the Central Andes of South America had profound effects on land, oceans and atmosphere. Very little, however, is known about the ecosystems that developed on the ecospaces first formed once the Altiplano reached its present high altitude. We present a micropaleontological (diatoms and ostracods) and stratigraphic analysis of Pliocene Member C of the El Descanso Formation that outcrops near the town of Yauri, Peru. Lithofacies analysis indicates that fluvial conditions were eventually replaced by several lacustrine and marsh environments. Diatom and ostracod assemblages indicate that these bodies of water were alkaline, slightly saline and shallow. Lacustrine conditions were favoured by a change in the tectonic regime from compressional to tensional, which led to formation of small isolated basins, and by wet conditions. We hypothesize that a stronger and/or longer rainy season prevailed during that time in the Altiplano, possibly as a consequence of an intensified South American Summer Monsoon, driven by a warmer atmosphere, imposed by high concentrations of atmospheric CO2.

Diatom assemblages that span the late-glacial and early-Holocene period were analyzed from three small lakes in the Greater Yellowstone region. The sites vary in surficial geology, elevation, vegetation, and precipitation seasonality, and these differences provide a tool to evaluate the importance of large-scale climatic change relative to localized catchment proces%s on aquatic ecosystem evolution. All assemblages underwent synchronous shifts in community structure in the intervals of 13.9-13.8, 13.2-13.1, 11.3-11.0 and 8.8-8.7 cal ka. The shift at 11.3-11.0 cal ka also is evident in other proxy records from these sites, such as pollen and charcoal, which suggests large-scale climatic influences on both aquatic and terrestrial ecosystems. Because the shifts in diatom assemblages are synchronous in lakes with variable geological settings and local precipitation patterns, we infer that large-scale climatic change was the principal driver of aquatic ecosystem evolution in this region during the late-Glacial and early Holocene periods.

Regime shifts in shallow lakes are often associated with anthropogenic impacts, such as land-use change, non-point source nutrient loading, and overfishing. These shifts have mostly been examined in lakes in temperate and boreal regions and within anthropogenically disturbed basins. Here, it is demonstrated that tropical floodplain lakes in a region of virtually no human disturbance naturally undergo frequent regime shifts. We demonstrate this using satellite imagery to provide a 23-year time series of 22-oxbow lakes or “cochas” along 300 km of the Manu River in SE Peru. In any year, a majority of these lakes is in a macrophyte-free, phytoplankton-dominated state. However, over the 23 years covered by images, roughly a third of the lakes experienced abrupt shifts to a floating macrophyte state. Macrophyte cover persisted for ≤ 3 year. Analysis of water level fluctuations sampled on a subset of the lakes for 1 year suggests that lake isolation from streams and the main river facilitates regime shifts. Multiple forcing factors, both internal and external to the lakes themselves, could drive the observed regime shifts, but insufficient data exist from this remote region to identify the key processes.

A multidecadal-scale lake-level reconstruction for Lago Wiñaymarca, the southern basin of Lake Titicaca, has been generated from diatom species abundance data. These data suggest that ~6500 cal yr BP Lago Wiñaymarca was dry, as indicated by a sediment unconformity. At ~4400 cal yr BP, the basin began to fill, as indicated by the dominance of shallow epiphytic species. It remained somewhat saline with extensive wetlands and abundant aquatic plants until ~3800 cal yr BP, when epiphytic species were replaced by planktic saline-indifferent species, suggesting a saline shallow lake. Wiñaymarca remained a relatively shallow lake that fluctuated on a multidecadal scale until ~1250 cal yr BP, when freshwater planktic species increased, suggesting a rise in lake level with a concomitant decrease in salinity. The lake became gradually fresher, dominated by deep, freshwater species from ~850 cal yr BP. By ~80 cal yr BP, saline-tolerant species were rare, and the lake was dominated by freshwater planktic diatoms, resembling the fresh and deep lake of today. These results reveal a more dynamic and chronologically specific record of lake-level fluctuations and associated ecological conditions that provide important new data for paleoclimatologists and archaeologists, to better understand human-environmental dynamics during the mid- to late Holocene.

High-resolution records of geochemical data from four lakes in the Greater Yellowstone region were used to investigate watershed and lake history during the late-glacial and early-Holocene periods. Clastic input to regional lakes was high and variable during the early stages of lake development, when the surrounding landscape was geomorphically unstable and sparsely vegetated, and it decreased as vegetation gradually developed in each catchment. The decrease of clastic input was not regionally synchronous but occurred in a time-transgressive pattern from south to north. Long-term organic matter concentration and diatom production were inversely related to catchment erosion during the early stages of lake development and increased as temperatures warmed and in-lake nutrient concentrations increased. Similarly, calcite production usually was low following lake formation and increased over time, driven by climate change and its associated influences on lake-level, algal production, and lake thermal structure. Overall differences in the timing and pattern of geochemical change indicate that once the landscape had stabilized following deglaciation, changes in the geochemical character of the sediments were strongly influenced by local factors.

Diatoms in ice cores have been used to infer regional and global climatic events. These archives offer high-resolution records of past climate events, often providing annual resolution of environmental variability during the Late Holocene. Recently, the first low-latitude tropical diatoms were described from the Quelccaya Summit Dome. Here, we document diatoms observed in ice cores from Quelccaya, spanning AD 1300 to 1815, along with those from two additional glaciers (Coropuna, and Sajama glaciers) in the tropical Andes, spanning AD 1764 to 1814. Diatom assemblages recovered from these three sites were rare, but differ in abundance and species composition through time. Assemblages are characterized by cosmopolitan and aerophilic species, mostly pennate diatoms. There were 44 taxa in all, with Pinnularia cf. borealis Ehrenberg being the most common species encountered in the samples. Eleven taxa were found at all three sites. Both Coropuna and Sajama had taxa that were unique to these locations, whereas Q...

Different types of biogenic remains, ranging from siliceous algae to carbonate precipitates, accumulate in the sediments of lakes and other aquatic ecosystems. Unicellular algae called diatoms, which form a siliceous test or frustule, are an ecologically and biogeochemically important group of organisms in aquatic environments and are often preserved in lake or marine sediments. When diatoms accumulate in large numbers in sediments, the fossilized remains can form diatomite. In sedimentological literature, “diatomite” is defined as a friable, light-coloured, sedimentary rock with a diatom content of at least 50%, however, in the Quaternary science literature diatomite is commonly used as a description of a sediment type that contains a “large” quantity of diatom frustules without a precise description of diatom abundance. Here we pose the question: What is diatomite? What quantity of diatoms define a sediment as diatomite? Is it an uncompacted sediment or a compacted sediment? We provide a short overview of prior practices and suggest that sediment with more than 50% of sediment weight comprised of diatom SiO2 and having high (>70%) porosity is diatomaceous ooze if unconsolidated and diatomite if consolidated. Greater burial depth and higher temperatures result in porosity loss and recrystallization into porcelanite, chert, and pure quartz.

We identify key interdisciplinary questions and approaches to understanding the paleogeographic and biotic history of Amazonia. We discuss the importance of comparing evolutionary taxonomic units across groups and considering their particular environmental affinities as a framework for a mechanistic understanding of how the diversity of Amazonia was assembled across space and time. Although lineage diversity of the Amazonian biota is often quite old, current evidence indicates that much of Amazonia’s observed “species-level” diversity, as exemplified by birds, mammals, and butterflies, is young, mostly dating to the Quaternary. Much of the modern Amazonian landscape, including in particular its hydrological and environmental systems, was shaped over the Pliocene and Quaternary (last 5 Ma), yet significant landscape change affecting the evolution of biotas is less than 2 million years old.

Determining the mechanisms of community assembly forms the foundation of biogeography and community ecology. Studies of the biodiversity of Neotropical macro-organisms have recognized the roles of environmental, spatial, and historical factors in structuring communities at different spatial and temporal scales, but the influences on microorganisms are not well studied. Diatoms (unicellular siliceous algae) are a very species-rich group of algae, disperse widely, and respond rapidly and sensitively to environmental variation. In this chapter, we use a newly constructed database of tropical South American diatoms (8°N–30°S and 58–79°W) to analyze the distribution and diversity patterns of species across lentic and lotic environments, including predictors that describe local (limnology) and regional (geo-climatic) factors. We provide a conceptual framework that examines community responses (species composition and diversity) to environmental and spatial factors by applying paleolimnology and macroecological approaches (Theory of Island of Biogeography and metacommunity theory). Diatom biogeographic patterns emerge for (1) identifying regionally distinct floras with a significant association with geographic groups of lakes, (2) determining latitudinal gradients of species richness and community structure, and (3) estimating the joint contribution of environmental filtering and dispersal dynamics in affecting diatom community composition across time. We emphasize the potential for incorporating diatom ecology and paleolimnology into a macroecology framework to further develop multiple, interdisciplinary hypotheses on the mechanisms driving microbial diversity and community assembly in the Neotropics.

Continental hydrothermal systems are a dynamic component of global thermal and geochemical cycles, exerting a pronounced impact on water chemistry and heat storage. As such, these environments are commonly classified by temperature, thermal fluid ionic concentration, and pH. Terrestrial hydrothermal systems are a refuge for extremophilic organisms, as extremes in temperature, metal concentration, and pH profoundly impact microorganism assemblage composition. While numerous studies focus on Bacteria and Archaea in these environments, few focus on Eukarya-likely due to lower temperature tolerances and because they are not model organisms for understanding the evolution of early life. However, where present, eukaryotic organisms are significant members of continental hydrothermal microorganism communities. Thus, this manuscript focuses on the eukaryotic occupants of terrestrial hydrothermal systems and provides a review of the current status of research, including microbe-eukaryote interactions and suggestions for future directions.

The evolutionary dynamics of El Nino Southern Oscillation (ENSO) over the last glacial period remains understudied, despite its potential in providing a “cold case” for climate sensitivity studies. Here, we investigate SE Asian-Pacific paleoclimate records to decipher the dominant underlying mechanism that governed tropical Asian-Pacific hydrology during MIS 3. Our results suggest that the glacial emergence of the Sunda Shelf likely altered the atmospheric circulation pattern in Southeast (SE) Asia and led to the realignment of rainfall patterns between Thailand and Indonesia during the last glacial period. We also propose that the long-term hydrological regime change in the tropical Asian-Pacific region during MIS 3 was mainly influenced by an El Nino-like mechanism. An intense El Nino-like condition led to strong aridity in SE Asia during mid MIS 3. By late MIS 3, an enhanced seasonality dampened the intensity of the El Nino-like conditions, thus, leading to muted aridity in SE Asia. The alternating warm and wet summer months and droughts during winter favoured the proliferation of C4 plant types in Northern Thailand from mid MIS 3 to late MIS 3.

We present a reconstruction of environmental changes from sediments of high-altitude Laguna Chepical in the subtropical Andes of Central Chile (32°16′S; 70°30′W, 3050 m a.s.l.) for the past 3100 years. Based on subfossil pollen, microscopic charcoal and diatoms, we inferred changes in moisture (related to precipitation) and ice-cover/ice-free season (related to summer temperature) at decadal to millennial scales. Sustained wetter and colder summer temperatures than today prevailed between 1100 BC and ca. AD 1. Afterward, decreasing pollen accumulation rates and increased fire activity suggest drier conditions and possibly enhanced seasonality and/or inter-annual climate variability. Frequent changes between cold and warm summers were observed, particularly for the last 1000 years. About AD 1250 (during the Medieval Climate Anomaly), wet years and early break up of ice-cover occurred in central Chile, which is today typical for El Nino-like mean conditions. Conversely, and with the exception of a few wet pulses, a generally dry period with extended ice-cover (cool summers) was observed between AD 1400 and AD 1850 (Little Ice Age). This can be interpreted as a trend toward more La Nina-like mean conditions. Recent climate change and human disturbances during the last 100 years have prompted changes in diatom and plant communities that are unprecedented in the late Holocene. First, planktonic diatoms increased as a result of hydraulic interventions in the lake during the late 19th century, and secondly, the Andean vegetation shifted upward as result of recent warming, and the frequency of arboreal taxa was significantly reduced. At the same time peaks of fire activity were observed.

The Little Ice Age and Medieval Climate Anomaly are two climatic intervals within the last 2000 years that had distinctive conditions in many North American paleoclimate reconstructions. During each of these intervals, the Crevice Lake, Montana paleorecord shows distinctive limnological characteristics inferred from fossil diatoms that reflect changes in temperature seasonality and lake thermal structure. A thermodynamic-ecological model, DYRESM-CAEDYM, was used to estimate climatic conditions during these time intervals and to explore the potential for linking paleo-records with lake models to evaluate the dynamic interactions of environmental variables in influencing diatom populations over time. The model effectively simulates the timing and distribution of Stephanodiscus and Cyclotella populations evident in the modern Crevice Lake observational data. In sensitivity tests altering multiple weather inputs had a greater effect on lake temperature isotherm patterns compared with changing only single variables, which suggests the interactive effect of multiple climate variables in affecting lake thermal structure. The model simulations show the importance of the rate of climate change in affecting lake thermal structure and diatom community structure, particularly during spring and early summer. The model also provides constraints on the range of changes in solar radiation, temperature, and wind speeds that may have produced the diatom communities characteristic of the Medieval Climate Anomaly, Little Ice Age, and contemporary times.

Lakes are a key feature of arctic landscapes and can be an important component of regional organic carbon (OC) budgets, but C burial rates are not well estimated. 210 Pb-dated sediment cores and carbon and organic matter (as loss-on-ignition) content were used to estimate OC burial for 16 lakes in SW Greenland. Burial rates were corrected for sediment focusing using the 210 Pb flux method. The study lakes span a range of water chemistries (conductivity range 25–3400 µS cm −1 ), areas (< 4–100 ha) and maximum depths (~ 10–50 m). The regional average focusing-corrected OC accumulation rate was ~ 2 g C m −2 y −1 prior to ~ 1950 and 3.6 g C m −2 y −1 after 1950. Among-lake variability in post-1950 OC AR was correlated with in-lake dissolved organic carbon concentration, conductivity, altitude and location along the fjord. Twelve lakes showed an increase in mean OC AR over the analyzed time period, ~ 1880–2000; as the study area was cooling until recently, this increase is probably attributable to other global change processes, for example, altered inputs of N or P. There are ~ 20,000 lakes in the study area ranging from ~ 1 ha to more than 130 km 2 , although over 83% of lakes are less than 10 ha. Extrapolating the mean post-1950 OC AR (3.6 g C m −2 y −1 ) to all lakes larger than 1000 ha and applying a lower rate of ~ 2 g C m −2 y −1 to large lakes (> 1000 ha) suggests a regional annual lake OC burial rate of ~ 10.14 × 10 9 g C y −1 post 1950. Given the low C content of soils in this area, lakes represent a substantial regional C store.

A synthesis of 93 hydrologic records from across North and Central America, and adjacent tropical and Arctic islands, reveals centennial to millennial trends in the regional hydroclimates of the Common Era (CE; past 2000 years). The hydrological records derive from materials stored in lakes, bogs, caves, and ice from extant glaciers, which have the continuity through time to preserve low-frequency ( > 100 year) climate signals that may extend deeper into the Holocene. The most common pattern, represented in 46 (49 %) of the records, indicates that the centuries before 1000 CE were drier than the centuries since that time. Principal component analysis indicates that millennial-scale trends represent the dominant pattern of variance in the southwestern US, northeastern US, mid-continent, Pacific Northwest, Arctic, and tropics, although not all records within a region show the same direction of change. The Pacific Northwest and the southernmost tier of the tropical sites tended to dry toward present, as many other areas became wetter than before. In 22 records (24 %), the Medieval Climate Anomaly period (800–1300 CE) was drier than the Little Ice Age (1400–1900 CE), but in many cases the difference was part of the longer millennial-scale trend, and, in 25 records (27 %), the Medieval Climate Anomaly period represented a pluvial (wet) phase. Where quantitative records permitted a comparison, we found that centennial-scale fluctuations over the Common Era represented changes of 3–7 % in the modern interannual range of variability in precipitation, but the accumulation of these long-term trends over the entirety of the Holocene caused recent centuries to be significantly wetter, on average, than most of the past 11 000 years.