107 results on '"Shiratori H"'
Search Results
2. Development of a membrane dialysis bioreactor and its application to a large-scale culture of a symbiotic bacterium, Symbiobacterium thermophilum
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Ueda, K., Saka, H., Ishikawa, Yoshiyuki, Kato, T., Takeshita, Y., Shiratori, H., Ohno, M., Hosono, K., Wada, M., Ishikawa, Yohichi, and Beppu, T.
- Published
- 2002
- Full Text
- View/download PDF
3. CFAP45 deficiency causes situs abnormalities and asthenospermia by disrupting an axonemal adenine nucleotide homeostasis module
- Author
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Dougherty, G.W., Mizuno, K., Nöthe-Menchen, T., Ikawa, Y., Boldt, K., Ta-Shma, A., Aprea, I., Minegishi, K., Pang, Y.P., Pennekamp, P., Loges, N.T., Raidt, J., Hjeij, R., Wallmeier, J., Mussaffi, H., Perles, Z., Elpeleg, O., Rabert, F., Shiratori, H., Letteboer, S.J.F., Horn, N., Young, S., Strünker, T., Stumme, F., Werner, C., Olbrich, H., Takaoka, K., Ide, T., Twan, W.K., Biebach, L., Große-Onnebrink, J., Klinkenbusch, J.A., Praveen, K., Bracht, D.C., Höben, I.M., Junger, K., Gützlaff, J., Cindrić, S., Aviram, M., Kaiser, T., Memari, Y., Dzeja, P.P., Dworniczak, B., Ueffing, M., Roepman, R., Bartscherer, K., Katsanis, N., Davis, E.E., Amirav, I., Hamada, H., Omran, H., Dougherty, G.W., Mizuno, K., Nöthe-Menchen, T., Ikawa, Y., Boldt, K., Ta-Shma, A., Aprea, I., Minegishi, K., Pang, Y.P., Pennekamp, P., Loges, N.T., Raidt, J., Hjeij, R., Wallmeier, J., Mussaffi, H., Perles, Z., Elpeleg, O., Rabert, F., Shiratori, H., Letteboer, S.J.F., Horn, N., Young, S., Strünker, T., Stumme, F., Werner, C., Olbrich, H., Takaoka, K., Ide, T., Twan, W.K., Biebach, L., Große-Onnebrink, J., Klinkenbusch, J.A., Praveen, K., Bracht, D.C., Höben, I.M., Junger, K., Gützlaff, J., Cindrić, S., Aviram, M., Kaiser, T., Memari, Y., Dzeja, P.P., Dworniczak, B., Ueffing, M., Roepman, R., Bartscherer, K., Katsanis, N., Davis, E.E., Amirav, I., Hamada, H., and Omran, H.
- Abstract
Contains fulltext : 229376.pdf (publisher's version ) (Open Access), Axonemal dynein ATPases direct ciliary and flagellar beating via adenosine triphosphate (ATP) hydrolysis. The modulatory effect of adenosine monophosphate (AMP) and adenosine diphosphate (ADP) on flagellar beating is not fully understood. Here, we describe a deficiency of cilia and flagella associated protein 45 (CFAP45) in humans and mice that presents a motile ciliopathy featuring situs inversus totalis and asthenospermia. CFAP45-deficient cilia and flagella show normal morphology and axonemal ultrastructure. Proteomic profiling links CFAP45 to an axonemal module including dynein ATPases and adenylate kinase as well as CFAP52, whose mutations cause a similar ciliopathy. CFAP45 binds AMP in vitro, consistent with structural modelling that identifies an AMP-binding interface between CFAP45 and AK8. Microtubule sliding of dyskinetic sperm from Cfap45(-/-) mice is rescued with the addition of either AMP or ADP with ATP, compared to ATP alone. We propose that CFAP45 supports mammalian ciliary and flagellar beating via an adenine nucleotide homeostasis module.
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- 2020
4. Loss of PYCR2 Causes Neurodegeneration by Increasing Cerebral Glycine Levels via SHMT2
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Escande-Beillard, N., Loh, A., Saleem, S.N., Kanata, K., Hashimoto, Yui, Altunoglu, U., Metoska, A., Grandjean, J., Ng, F.M., Pomp, O., Baburajendran, N., Wong, J., Hill, J., Beillard, E., Cozzone, P., Zaki, M., Kayserili, H., Hamada, H., Shiratori, H., Reversade, B., Escande-Beillard, N., Loh, A., Saleem, S.N., Kanata, K., Hashimoto, Yui, Altunoglu, U., Metoska, A., Grandjean, J., Ng, F.M., Pomp, O., Baburajendran, N., Wong, J., Hill, J., Beillard, E., Cozzone, P., Zaki, M., Kayserili, H., Hamada, H., Shiratori, H., and Reversade, B.
- Abstract
Contains fulltext : 225883.pdf (Publisher’s version ) (Closed access), Patients lacking PYCR2, a mitochondrial enzyme that synthesizes proline, display postnatal degenerative microcephaly with hypomyelination. Here we report the crystal structure of the PYCR2 apo-enzyme and show that a novel germline p.Gly249Val mutation lies at the dimer interface and lowers its enzymatic activity. We find that knocking out Pycr2 in mice phenocopies the human disorder and depletes PYCR1 levels in neural lineages. In situ quantification of neurotransmitters in the brains of PYCR2 mutant mice and patients revealed a signature of encephalopathy driven by excessive cerebral glycine. Mechanistically, we demonstrate that loss of PYCR2 upregulates SHMT2, which is responsible for glycine synthesis. This hyperglycemia could be partially reversed by SHMT2 knockdown, which rescued the axonal beading and neurite lengths of cultured Pycr2 knockout neurons. Our findings identify the glycine metabolic pathway as a possible intervention point to alleviate the neurological symptoms of PYCR2-mutant patients.
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- 2020
5. BIOLOGICAL SIGNIFICANCE OF ACUTE RESPONSES OF ARTERIAL STIFFNESS MONITORED WITH CARDIO-ANKLE VASCULAR INDEX (CAVI) TO THE VARIOUS VASCULAR LOADINGS IN RABBIT MODEL
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Nagasawa, Y., primary, Shiratori, H., additional, Takagi, S., additional, Sakuma, K., additional, Chiba, T., additional, Komatsu, T., additional, Watanabe, K., additional, Aimoto, M., additional, Takahashi, M., additional, Shimizu, K., additional, Shirai, K., additional, and Takahara, A., additional
- Published
- 2019
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6. Xeroderma pigmentosum group C protein interacts with histones: regulation by acetylated states of histone H3
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Kakumu, E., Nakanishi, S., Shiratori, H. M., Kato, A., Kobayashi, W., Machida, S., Yasuda, T., Adachi, N., Saito, N., Ikura, T., Kurumizaka, H., Kimura, Hiroshi, Yokoi, M., Sakai, W., and Sugasawa, K.
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0301 basic medicine ,DNA Repair ,Histone Deacetylases ,Cell Line ,Histones ,03 medical and health sciences ,Histone H3 ,Histone H1 ,Genetics ,Humans ,Protein Interaction Domains and Motifs ,Global genome nucleotide-excision repair ,030102 biochemistry & molecular biology ,biology ,Acetylation ,Cell Biology ,Chromatin ,DNA-Binding Proteins ,Protein Transport ,030104 developmental biology ,Histone ,Biochemistry ,biology.protein ,Histone deacetylase ,Protein Processing, Post-Translational ,Protein Binding ,Nucleotide excision repair - Abstract
In the mammalian global genome nucleotide excision repair pathway, two damage recognition factors, XPC and UV-DDB, play pivotal roles in the initiation of the repair reaction. However, the molecular mechanisms underlying regulation of the lesion recognition process in the context of chromatin structures remain to be understood. Here, we show evidence that damage recognition factors tend to associate with chromatin regions devoid of certain types of acetylated histones. Treatment of cells with histone deacetylase inhibitors retarded recruitment of XPC to sites of UV-induced DNA damage and the subsequent repair process. Biochemical studies showed novel multifaceted interactions of XPC with histone H3, which were profoundly impaired by deletion of the N-terminal tail of histone H3. In addition, histone H1 also interacted with XPC. Importantly, acetylation of histone H3 markedly attenuated the interaction with XPC in vitro, and local UV irradiation of cells decreased the level of H3K27ac in the damaged areas. Our results suggest that histone deacetylation plays a significant role in the process of DNA damage recognition for nucleotide excision repair and that the localization and functions of XPC can be regulated by acetylated states of histones.
- Published
- 2017
7. THP-1 and human peripheral blood mononuclear cell-derived macrophages differ in their capacity to polarize in vitro
- Author
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Shiratori, H., Feinweber, C., Luckhardt, S., Linke, B., Resch, E., Geisslinger, G., Weigert, A., Parnham, M.J., and Publica
- Abstract
Macrophages (Mf) undergo activation to pro-inflammatory (M1) or anti-inflammatory (M2) phenotypes in response to pathophysiologic stimuli and dysregulation of the M1-M2 balance is often associated with diseases. Therefore, studying mechanisms of macrophage polarization may reveal new drug targets. Human Mf polarization is generally studied in primary monocyte-derived Mf (PBMC Mf) and THP-1-derived Mf (THP-1 Mf). We compared the polarization profile of THP-1 Mf with that of PBMC Mf to assess the alternative use of THP-1 for polarization studies. Cellular morphology, the expression profiles of 18 genes and 4 cell surface proteins, and phagocytosis capacity for apoptotic cells and S. aureus bioparticles were compared between these Mf, activated towards M1, M2a, or M2c subsets by stimulation with LPS/IFNg, IL-4, or IL-10, respectively, for 6 h, 24 h and 48 h. The Mf types are unique in morphology and basal expression of polarization marker genes, particularly CCL22, in a pre-polarized state, and were differentially sensitive to polarization stimuli. Generally, M1 markers were instantly induced and gradually decreased, while M2 markers were markedly expressed at a later time. Expression profiles of M1 markers were similar between the polarized Mf types, but M2a cell surface markers demonstrated an IL-4-dependent upregulation only in PBMC Mf. Polarized THP-1 Mf but not PBMC Mf showed distinctive phagocytic capacity for apoptotic cells and bacterial antigens, respectively. In conclusion, our data suggest that THP-1 may be useful for performing studies involving phagocytosis and M1 polarization, rather than M2 polarization.
- Published
- 2017
8. Bartonella japonica sp. Noiv. and Bartonella silvatica sp. nov. Isolated from Apodemus mice in japan
- Author
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Inoue, K, Kabeya, H, Shiratori, H, Ueda, K, Kosoy, My, Chiomel, Bb, Boulouis, Henri-Jean, Maruyama, S, Inconnu, Unité mixte de recherche biologie moléculaire et immunologie parasitaires et fongiques, Institut National de la Recherche Agronomique (INRA)-École nationale vétérinaire - Alfort (ENVA)-Agence Française de Sécurité Sanitaire des Aliments (AFSSA)-Université Paris-Est Créteil Val-de-Marne - Paris 12 (UPEC UP12), Institut National de la Recherche Agronomique (INRA)-École nationale vétérinaire d'Alfort (ENVA)-Agence Française de Sécurité Sanitaire des Aliments (AFSSA)-Université Paris-Est Créteil Val-de-Marne - Paris 12 (UPEC UP12), and ProdInra, Migration
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[SDV] Life Sciences [q-bio] ,[SDV]Life Sciences [q-bio] ,ComputingMilieux_MISCELLANEOUS - Abstract
International audience
- Published
- 2009
9. Clostridium clariflavum sp. nov. and Clostridium caenicola sp. nov., moderately thermophilic, cellulose-/cellobiose-digesting bacteria isolated from methanogenic sludge
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Shiratori, H., primary, Sasaya, K., additional, Ohiwa, H., additional, Ikeno, H., additional, Ayame, S., additional, Kataoka, N., additional, Miya, A., additional, Beppu, T., additional, and Ueda, K., additional
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- 2009
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10. Filimonas lacunae gen. nov., sp. nov., a member of the phylum Bacteroidetes isolated from fresh water
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Shiratori, H., primary, Tagami, Y., additional, Morishita, T., additional, Kamihara, Y., additional, Beppu, T., additional, and Ueda, K., additional
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- 2009
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11. Lutispora thermophila gen. nov., sp. nov., a thermophilic, spore-forming bacterium isolated from a thermophilic methanogenic bioreactor digesting municipal solid wastes
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Shiratori, H., primary, Ohiwa, H., additional, Ikeno, H., additional, Ayame, S., additional, Kataoka, N., additional, Miya, A., additional, Beppu, T., additional, and Ueda, K., additional
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- 2008
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12. Multi-layer resist system for 45-nm-node and beyond: part I
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Hashimoto, M., primary, Shiratori, H., additional, Horii, K., additional, Yokoya, Y., additional, Ohkubo, Y., additional, Takamizawa, H., additional, Fujimura, Y., additional, Morimoto, J., additional, Manoshiro, A., additional, Shimizu, M., additional, Yokoyama, T., additional, Enomoto, T., additional, and Nagai, M., additional
- Published
- 2006
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13. An Efficient Text Capture Method for Moving Robots Using DCT Feature and Text Tracking
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Shiratori, H., primary, Goto, H., additional, and Kobayashi, H., additional
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- 2006
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14. Performance Analysis of Rotating Permanent-Magnets Demagnetization
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Mizuno, T., primary, Kawai, M., additional, Tashiro, T., additional, Shiratori, H., additional, and Yamada, H., additional
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- 2003
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15. Multi-layer resist system for 45-nm-node and beyond: part I.
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Hashimoto, M., Shiratori, H., Horii, K., Yokoya, Y., Ohkubo, Y., Takamizawa, H., Fujimura, Y., Morimoto, J., Manoshiro, A., Shimizu, M., Yokoyama, T., Enomoto, T., and Nagai, M.
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- 2006
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16. Symbiobacterium thermophilum gen. nov., sp. nov., a symbiotic thermophile that depends on co-culture with a Bacillus strain for growth.
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Ohno, M, primary, Shiratori, H, additional, Park, M J, additional, Saitoh, Y, additional, Kumon, Y, additional, Yamashita, N, additional, Hirata, A, additional, Nishida, H, additional, Ueda, K, additional, and Beppu, T, additional
- Published
- 2000
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17. Ultrafast Energy Relaxation and Excitation Delocalization in Excited States of Zinc Porphyrin Dimers and Trimer
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Yamazaki, I., primary, Akimoto, S., additional, Yamazaki, T., additional, Shiratori, H., additional, and Osuka, A., additional
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- 1999
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18. DEVELOPMENT OF HIGH TRANSMISSION SILICA OPTICAL NANOFIBER PRODUCTION TECHNOLOGY.
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Iida, H., Shiratori, H., Osada, R., Ishihara, N., and Hakuta, K.
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NANOFIBERS ,LIGHT transmission ,OPTICAL fibers ,OPTICAL communications ,BRAGG gratings - Abstract
We developed a technology of realizing very low loss sub-micron diameter tapered fiber, optical nanofiber. Essence of the technology is described, and possible applications are discussed. [ABSTRACT FROM AUTHOR]
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- 2014
19. The transcription factor FoxH1 (FAST) mediates Nodal signaling during anterior-posterior patterning and node formation in the mouse.
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Yamamoto, M, Meno, C, Sakai, Y, Shiratori, H, Mochida, K, Ikawa, Y, Saijoh, Y, and Hamada, H
- Abstract
FoxH1 (FAST) is a transcription factor that mediates signaling by transforming growth factor-beta, Activin, and Nodal. The role of FoxH1 in development has now been investigated by the generation and analysis of FoxH1-deficient (FoxH1(-/-)) mice. The FoxH1(-/-) embryos showed various patterning defects that recapitulate most of the defects induced by the loss of Nodal signaling. A substantial proportion of FoxH1(-/-) embryos failed to orient the anterior-posterior (A-P) axis correctly, as do mice lacking Cripto, a coreceptor for Nodal. In less severely affected FoxH1(-/-) embryos, A-P polarity was established, but the primitive streak failed to elongate, resulting in the lack of a definitive node and its derivatives. Heterozygosity for nodal renders the FoxH1(-/-) phenotype more severe, indicative of a genetic interaction between FoxH1 and nodal. The expression of FoxH1 in the primitive endoderm rescued the A-P patterning defects, but not the midline defects, of FoxH1(-/-) mice. These results indicate that a Nodal-FoxH1 signaling pathway plays a central role in A-P patterning and node formation in the mouse.
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- 2001
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20. The retinoic acid-inactivating enzyme CYP26 is essential for establishing an uneven distribution of retinoic acid along the anterio-posterior axis within the mouse embryo.
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Sakai, Y, Meno, C, Fujii, H, Nishino, J, Shiratori, H, Saijoh, Y, Rossant, J, and Hamada, H
- Abstract
Retinoic acid (RA), a derivative of vitamin A, plays a pivotal role in vertebrate development. The level of RA may be determined by the balance between its synthesis and degradation. We have examined the role of CYP26, a P450 enzyme that may degrade RA, by generating mutant mice that lack CYP26. CYP26(-/-) mice exhibited anomalies, including caudal agenesis, similar to those induced by administration of excess RA. The concentration of endogenous RA, as revealed by marker gene activity, was markedly increased in the tailbud of the mutant animals, in which CYP26 is normally expressed. Expression of T (Brachyury) and Wnt3a in the tailbud was down-regulated in CYP26(-/-) mice, which may underlie the caudal truncation. The lack of CYP26 also resulted in homeotic transformation of vertebrae as well as in misspecification of the rostral hindbrain associated with anterior expansion of RA-positive domains. These results suggest that local degradation of RA by CYP26 is required for establishing an uneven distribution of RA along the anterio-posterior axis, which is essential for patterning the hindbrain, vertebrae, and tailbud.
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- 2001
21. Acceleration of lung metastasis by up-regulation of CD44 expression in osteosarcoma-derived cell transplanted mice
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Shiratori, H., Koshino, T., Uesugi, M., Nitto, H., and Saito, T.
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- 2001
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22. Coordination control of intramolecular energy transfer in boronate-bridged naphthalene-aryl ketone molecule
- Author
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Shiratori, H., Ohno, T., Nozaki, K., and Osuka, A.
- Published
- 2000
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23. Excitation delocalization and relaxation in linear and circular arrays of porphyrins.
- Author
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Osuka, A., Nakano, A., Shiratori, H., Akimoto, S., Nishimura, Y., Yamazaki, T., and Yamazaki, I.
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- 1999
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24. POTENTIAL OF Pd-D/D$sup +$ ELECTRODE AND ION PRODUCTS OF HDO
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Shiratori, H
- Published
- 1963
25. Sugar and arginine facilitate oral tolerance by ensuring the functionality of tolerogenic immune cell subsets in the intestine.
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Nagai M, Okawa T, Nakata K, Takahashi D, Miyajima R, Shiratori H, Yamanaka D, Nakamura A, Oyama C, Takahashi SI, Toyama-Sorimachi N, Suzuki K, Ohashi W, Dohi T, Kawamura YI, and Hase K
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- Animals, Mice, Mice, Inbred C57BL, Administration, Oral, CX3C Chemokine Receptor 1 metabolism, Intestines immunology, Antigens, CD metabolism, Integrin alpha Chains metabolism, Sugars metabolism, Glycolysis, Fasting, Signal Transduction, Intestinal Mucosa immunology, Intestinal Mucosa metabolism, Female, Arginine metabolism, Immune Tolerance, T-Lymphocytes, Regulatory immunology, Ovalbumin immunology, Dendritic Cells immunology, Dendritic Cells metabolism, TOR Serine-Threonine Kinases metabolism
- Abstract
Although oral tolerance is a critical system in regulating allergic disorders, the mechanisms by which dietary factors regulate the induction and maintenance of oral tolerance remain unclear. To address this, we explored the differentiation and function of various immune cells in the intestinal immune system under fasting and ad libitum-fed conditions before oral ovalbumin (OVA) administration. Fasting mitigated OVA-specific Treg expansion, which is essential for oral tolerance induction. This abnormality mainly resulted from functional defects in the CX3CR1
+ cells responsible for the uptake of luminal OVA and reduction of tolerogenic CD103+ dendritic cells. Eventually, fasting impaired the preventive effect of oral OVA administration on asthma and allergic rhinitis development. Specific food ingredients, namely carbohydrates and arginine, were indispensable for oral tolerance induction by activating glycolysis and mTOR signaling. Overall, prior food intake and nutritional signals are critical for maintaining immune homeostasis by inducing tolerance to ingested food antigens., Competing Interests: Declaration of interests The authors declare no competing interests., (Copyright © 2024 The Authors. Published by Elsevier Inc. All rights reserved.)- Published
- 2024
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26. Structural-model-based genome mining can efficiently discover novel non-canonical terpene synthases hidden in genomes of diverse species.
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Abe T, Shiratori H, Kashiwazaki K, Hiasa K, Ueda D, Taniguchi T, Sato H, Abe T, and Sato T
- Abstract
Non-canonical terpene synthases (TPSs) with primary sequences that are unrecognizable as canonical TPSs have evaded detection by conventional genome mining. This study aimed to prove that novel non-canonical TPSs can be efficiently discovered from proteins, hidden in genome databases, predicted to have 3D structures similar to those of class I TPSs. Six types of non-canonical TPS candidates were detected using this search strategy from 268 genome sequences from actinomycetes. Functional analyses of these candidates revealed that at least three types were novel non-canonical TPSs. We propose classifying the non-canonical TPSs as classes ID, IE, and IF. A hypothetical protein MBB6373681 from Pseudonocardia eucalypti (PeuTPS) was selected as a representative example of class ID TPSs and characterized. PeuTPS was identified as a diterpene synthase that forms a 6/6/6-fused tricyclic gersemiane skeleton. Analyses of PeuTPS variants revealed that amino acid residues within new motifs [D(N/D), ND, and RXXKD] located close to the class I active site in the 3D structure were essential for enzymatic activity. The homologs of non-canonical TPSs found in this study exist in bacteria as well as in fungi, protists, and plants, and the PeuTPS gene is not located near terpene biosynthetic genes in the genome. Therefore, structural-model-based genome mining is an efficient strategy to search for novel non-canonical TPSs that are independent of biological species and biosynthetic gene clusters and will contribute to expanding the structural diversity of terpenoids., Competing Interests: There are no conflicts to declare., (This journal is © The Royal Society of Chemistry.)
- Published
- 2024
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27. A purified diet affects intestinal epithelial proliferation and barrier functions through gut microbial alterations.
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Shiratori H, Hattori KM, Nakata K, Okawa T, Komiyama S, Kinashi Y, Kabumoto Y, Kaneko Y, Nagai M, Shindo T, Moritoki N, Kawamura YI, Dohi T, Takahashi D, Kimura S, and Hase K
- Subjects
- Mice, Animals, Immunity, Innate, Lymphocytes, Diet, Bacteria, Cell Proliferation, Gastrointestinal Microbiome
- Abstract
The gut microbiota plays a crucial role in maintaining epithelial barrier function. Although multiple studies have demonstrated the significance of dietary factors on the gut microbiota and mucosal barrier function, the impact of a purified diet, which has long been used in various animal experiments, on intestinal homeostasis remains to be elucidated. Here, we compared the impact of two different types of diets, a crude diet and an AIN-93G-formula purified diet, on epithelial integrity and the gut microbiota. Purified diet-fed mice exhibited shorter villi and crypt lengths and slower epithelial turnover, particularly in the ileum. In addition, antimicrobial products, including REG3γ, were substantially decreased in purified diet-fed mice. Purified diet feeding also suppressed α1,2-fucosylation on the epithelial surface. Furthermore, the purified diet induced metabolic rewiring to fatty acid oxidation and ketogenesis. 16S ribosomal RNA gene sequencing of the ileal contents and mucus layer revealed distinct gut microbiota compositions between the purified and crude diet-fed mice. Purified diet feeding reduced the abundance of segmented filamentous bacteria (SFB), which potently upregulate REG3γ and fucosyltransferase 2 (Fut2) by stimulating group 3 innate lymphoid cells (ILC3s) to produce IL-22. These observations illustrate that the intake of a crude diet secures epithelial barrier function by facilitating SFB colonization, whereas a purified diet insufficiently establishes the epithelial barrier, at least partly owing to the loss of SFB. Our data suggest that the influence of purified diets on the epithelial barrier integrity should be considered in experiments using purified diets., (© The Author(s) 2024. Published by Oxford University Press on behalf of The Japanese Society for Immunology.)
- Published
- 2024
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28. The relationship between alpha power and heart rate variability commonly seen in various mental states.
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Kawashima T, Shiratori H, and Amano K
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- Humans, Heart Rate physiology, Wakefulness physiology, Arousal physiology, Sleepiness, Electroencephalography
- Abstract
The extensive exploration of the correlation between electroencephalogram (EEG) and heart rate variability (HRV) has yielded inconsistent outcomes, largely attributable to variations in the tasks employed in the studies. The direct relationship between EEG and HRV is further complicated by alpha power, which is susceptible to influences such as mental fatigue and sleepiness. This research endeavors to examine the brain-heart interplay typically observed during periods of music listening and rest. In an effort to mitigate the indirect effects of mental states on alpha power, subjective fatigue and sleepiness were measured during rest, while emotional valence and arousal were evaluated during music listening. Partial correlation analyses unveiled positive associations between occipital alpha2 power (10-12 Hz) and nHF, an indicator of parasympathetic activity, under both music and rest conditions. These findings underscore brain-heart interactions that persist even after the effects of other variables have been accounted for., Competing Interests: The authors have declared that no competing interests exist., (Copyright: © 2024 Kawashima et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.)
- Published
- 2024
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29. Asymmetric quantum decision-making.
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Shiratori H, Shinkawa H, Röhm A, Chauvet N, Segawa E, Laurent J, Bachelier G, Yamagami T, Horisaki R, and Naruse M
- Abstract
Collective decision-making plays a crucial role in information and communication systems. However, decision conflicts among agents often impede the maximization of potential utilities within the system. Quantum processes have shown promise in achieving conflict-free joint decisions between two agents through the entanglement of photons or the quantum interference of orbital angular momentum (OAM). Nonetheless, previous studies have shown symmetric resultant joint decisions, which, while preserving equality, fail to address disparities. In light of global challenges such as ethics and equity, it is imperative for decision-making systems to not only maintain existing equality but also address and resolve disparities. In this study, we investigate asymmetric collective decision-making theoretically and numerically using quantum interference of photons carrying OAM or entangled photons. We successfully demonstrate the realization of asymmetry; however, it should be noted that a certain degree of photon loss is inevitable in the proposed models. We also provide an analytical formulation for determining the available range of asymmetry and describe a method for obtaining the desired degree of asymmetry., (© 2023. Springer Nature Limited.)
- Published
- 2023
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30. Gut microbiota-derived lipid metabolites facilitate regulatory T cell differentiation.
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Shiratori H, Oguchi H, Isobe Y, Han KH, Sen A, Yakebe K, Takahashi D, Fukushima M, Arita M, and Hase K
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- Animals, Mice, Chromatography, Liquid, Tandem Mass Spectrometry, Lymphocyte Activation, Cell Differentiation, Lipids pharmacology, Dextran Sulfate adverse effects, Mice, Inbred C57BL, Colon metabolism, Disease Models, Animal, Gastrointestinal Microbiome, Colitis metabolism
- Abstract
Commensal bacteria-derived metabolites are critical in regulating the host immune system. Although the impact of gut microbiota-derived hydrophilic metabolites, such as short-chain fatty acids, on immune cell functions and development has been well documented, the immunomodulatory effects of gut microbiota-derived lipids are still of interest. Here, we report that lipid extracts from the feces of specific-pathogen-free (SPF), but not germ-free (GF), mice showed regulatory T (Treg)-cell-inducing activity. We conducted RP-HPLC-based fractionation and liquid chromatography-tandem mass spectrometry (LC-MS/MS)-based lipidome profiling and identified two bioactive lipids, 9,10-dihydroxy-12Z-octadecenoic acid (9,10-DiHOME) and all-trans retinoic acid (atRA), with Treg-inducing activity in vitro. The luminal abundance of 9,10-DiHOME in the large intestine was significantly decreased by dextran sulfate sodium (DSS)-induced colitis, indicating that 9,10-DiHOME may be a potential biomarker of colitis. These observations implied that commensal bacteria-derived lipophilic metabolites might contribute to Treg development in the large intestine., (© 2023. The Author(s).)
- Published
- 2023
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31. Laparoscopic repair for internal hernia associated with colostomy: a case report.
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Shiratori H, Onoda T, Takabayashi N, Harada C, Imada S, Kita Y, Kazama S, Ishihara Y, Kobayashi R, and Hiramatsu T
- Abstract
A 63-year-old woman was admitted with abdominal pain two months after laparoscopic abdominoperineal resection for rectal cancer. Computed tomography revealed dilated small intestine had passed through a defect between the lifted sigmoid colon and abdominal wall. She was diagnosed with small bowel obstruction without strangulation due to internal hernia and managed nonoperatively based on her wish. Recurrence of intestinal obstruction occurred for which curative surgery was performed laparoscopically. The herniated intestine was restored to the normal position, and the hernia orifice was closed using barbed suture, on laparoscopic management. Internal hernia is a rare complication after colostomy that requires surgical management. Although laparoscopic approach on re-operation is difficult, laparoscopic surgery may be suitable for patients with IHAC in terms of required less use of adhesiolysis., Competing Interests: We declare that there is no conflict of interests., (Published by Oxford University Press and JSCR Publishing Ltd. © The Author(s) 2023.)
- Published
- 2023
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32. Planar cell polarity-dependent asymmetric organization of microtubules for polarized positioning of the basal body in node cells.
- Author
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Sai X, Ikawa Y, Nishimura H, Mizuno K, Kajikawa E, Katoh TA, Kimura T, Shiratori H, Takaoka K, Hamada H, and Minegishi K
- Subjects
- Actins metabolism, Animals, Cilia metabolism, Mice, Microtubules metabolism, Basal Bodies, Cell Polarity physiology
- Abstract
For left-right symmetry breaking in the mouse embryo, the basal body must become positioned at the posterior side of node cells, but the precise mechanism for this has remained unknown. Here, we examined the role of microtubules (MTs) and actomyosin in this basal body positioning. Exposure of mouse embryos to agents that stabilize or destabilize MTs or F-actin impaired such positioning. Active myosin II was detected at the anterior side of node cells before the posterior shift of the basal body, and this asymmetric activation was lost in Prickle and dachsous mutant embryos. The organization of basal-body associated MTs (baMTs) was asymmetric between the anterior and posterior sides of node cells, with anterior baMTs extending horizontally and posterior baMTs extending vertically. This asymmetry became evident after polarization of the PCP core protein Vangl1 and before the posterior positioning of the basal body, and it also required the PCP core proteins Prickle and dachsous. Our results suggest that the asymmetry in baMT organization may play a role in correct positioning of the basal body for left-right symmetry breaking., Competing Interests: Competing interests The authors declare no competing or financial interests., (© 2022. Published by The Company of Biologists Ltd.)
- Published
- 2022
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33. Analysis of effects of acute hypovolemia on arterial stiffness in rabbits monitored with cardio-ankle vascular index.
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Nagasawa Y, Shimoda A, Shiratori H, Morishita T, Sakuma K, Chiba T, Cao X, Kawakami S, Aimoto M, Miyazaki C, Sato S, Takahashi M, Shimizu K, Shirai K, and Takahara A
- Subjects
- Acute Disease, Animals, Male, Rabbits, Arteries physiopathology, Cardio Ankle Vascular Index, Hypovolemia physiopathology, Monitoring, Physiologic methods, Vascular Stiffness
- Abstract
Although elasticity of the conduit arteries is known to be contribute effective peripheral circulation via Windkessel effects, the relationship between changes in intra-aortic blood volume and conduit artery elasticity remains unknown. Here we assessed the effects of change in intra-aortic blood volume induced by blood removal and subsequent blood transfusion on arterial stiffness and the involvement of autonomic nervous activity using our established rabbit model in the presence or absence of the ganglion blocker hexamethonium (100 mg/kg). Blood removal at a rate of 1 mL/min gradually decreased the blood pressure and blood flow of the common carotid artery but increased a stiffness indicator the cardio-ankle vascular index, which was equally observed in the presence of hexamethonium. These results suggest that arterial stiffness acutely responds to changes in intra-aortic blood volume independent of autonomic nervous system modification., Competing Interests: Declaration of competing interest This study was funded by Fukuda Denshi Co., Ltd., (Copyright © 2022 The Authors. Production and hosting by Elsevier B.V. All rights reserved.)
- Published
- 2022
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34. Impact of Inferior Mesenteric Artery Occlusion on the Calibre of Collateral Arteries of the Colon.
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Iida T, Murono K, Shiratori H, Nozawa H, Kawai K, Sasaki K, Emoto S, Kishikawa J, Ishii H, Yokoyama Y, Abe S, Nagai Y, Anzai H, Sonoda H, Takayama T, Hoshina K, and Ishihara S
- Subjects
- Aged, Aged, 80 and over, Colorectal Neoplasms pathology, Cross-Sectional Studies, Female, Follow-Up Studies, Humans, Male, Mesenteric Artery, Inferior pathology, Middle Aged, Prognosis, Colorectal Neoplasms surgery, Colorectal Surgery methods, Laparoscopy methods, Mesenteric Artery, Inferior surgery
- Abstract
Background/aim: The inferior mesenteric arteries (IMA) are occluded in some colorectal cancer patients. This study evaluated the impact of IMA occlusion on the calibre of collateral arteries., Patients and Methods: As an IMA obstruction model, 20 patients who underwent abdominal aortic aneurysm surgery, with ligated, excluded, or embolised IMA, were enrolled. Changes in the calibre of the left colic arteries (LCAs) and marginal arteries after surgeries were evaluated., Results: The cross-sectional area of the LCA significantly increased after surgery (4.34 mm
2 vs. 6.34 mm2 , p=0.0009) and that of the marginal artery did not change significantly (2.69 mm2 vs. 3.01 mm2 , p=0.33)., Conclusion: The calibre of the LCA increased after IMA occlusion. The descending branch of the LCA should be confirmed preoperatively to preserve blood flow during a low tie procedure., (Copyright © 2021 International Institute of Anticancer Research (Dr. George J. Delinasios), All rights reserved.)- Published
- 2021
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35. Optimal Size Criteria for Lateral Lymph Node Dissection After Neoadjuvant Chemoradiotherapy for Rectal Cancer.
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Kawai K, Shiratori H, Hata K, Nozawa H, Tanaka T, Nishikawa T, Murono K, and Ishihara S
- Subjects
- Adult, Aged, Aged, 80 and over, Case-Control Studies, Disease-Free Survival, Female, Humans, Incidence, Japan epidemiology, Lymph Nodes diagnostic imaging, Lymph Nodes pathology, Lymphatic Metastasis pathology, Male, Middle Aged, Neoplasm Recurrence, Local epidemiology, Neoplasm Staging methods, Proctectomy methods, Rectal Neoplasms pathology, Rectal Neoplasms surgery, Retrospective Studies, Sensitivity and Specificity, Tomography, X-Ray Computed methods, Lymph Node Excision methods, Neoadjuvant Therapy methods, Rectal Neoplasms drug therapy, Rectal Neoplasms radiotherapy
- Abstract
Background: Although chemoradiotherapy followed by radical surgery without lateral lymph node dissection is the current standard treatment in patients with rectal cancer, recent studies have demonstrated the benefits of adding lateral lymph node dissection to total mesorectal excision in patients with suspected lateral lymph node metastasis. However, the optimal indication for lateral lymph node dissection after chemoradiotherapy has not been determined., Objective: This study aimed to establish the optimal indication for lateral lymph node dissection after chemoradiotherapy in patients with rectal cancer., Design: This is a retrospective study., Settings: This study was conducted at a single referral hospital., Patients: A total of 279 patients with rectal cancer who underwent chemoradiotherapy followed by radical surgery between 2007 and 2018 were retrospectively enrolled., Main Outcome Measures: The largest lateral lymph nodes on CT were retrospectively assessed and compared with the pathologic results of dissected lateral lymph nodes and recurrences in lateral lymph node areas., Results: The incidence of lateral lymph node metastasis after chemoradiotherapy was estimated to be 9.3%. Although patients with lateral lymph node metastasis frequently developed distant recurrence, 40.4% survived for >5 years without recurrence. An analysis of the lateral lymph node sizes showed that lateral lymph node size ≥8 mm before chemoradiotherapy was the optimal criterion for lateral lymph node dissection, with a sensitivity and specificity of 92.3% and 78.7%. Using this criterion, 72.0% of the patients could be spared lateral lymph node dissection., Limitations: Because of the retrospective nature of the present study, the selection of patients who underwent lateral lymph node dissection was biased., Conclusions: The optimal indication for lateral lymph node dissection was lateral lymph node size ≥8 mm before chemoradiotherapy. Cancer could be eradicated in >30% of patients with lateral lymph node metastasis by dissecting metastatic lateral lymph nodes. See Video Abstract at http://links.lww.com/DCR/B428., Criterios De Tamao Ptimo Para La Diseccin De Ganglios Linfticos Laterales Despus De La Quimiorradioterapia Neoadyuvante Para El Cncer De Recto: ANTECEDENTES:Aunque la quimiorradioterapia seguida por cirugía radical sin disección de ganglios linfáticos laterales es el tratamiento estándar actual en pacientes con cáncer de recto, estudios recientes han demostrado beneficios de agregar disección de ganglios linfáticos laterales a la escisión mesorrectal total en pacientes con sospecha de metástasis de ganglios linfáticos laterales. Sin embargo, no se ha determinado la indicación óptima para la disección de los ganglios linfáticos laterales después de la quimiorradioterapia.OBJETIVO:Este estudio tuvo como objetivo establecer la indicación óptima para la disección de los ganglios linfáticos laterales después de la quimiorradioterapia en pacientes con cáncer de recto.DISEÑO:Estudio retrospectivo.ENTORNO CLINICO:Este estudio se realizó en un solo hospital de referencia.PACIENTES:Se inscribieron retrospectivamente un total de 279 pacientes con cáncer de recto que se sometieron a quimiorradioterapia seguida por cirugía radical entre 2007 y 2018.PRINCIPALES MEDIDAS DE VALORACION:Los ganglios linfáticos laterales más grandes en la tomografía computarizada se evaluaron retrospectivamente y se compararon con los resultados patológicos de los ganglios linfáticos laterales disecados y recidivas en las áreas de los ganglios linfáticos laterales.RESULTADOS:Se estimó que la incidencia de metástasis en los ganglios linfáticos laterales después de la quimiorradioterapia fue del 9,3%. Aunque los pacientes con metástasis en los ganglios linfáticos laterales con frecuencia desarrollaron recurrencia a distancia, el 40,4% sobrevivió durante más de 5 años sin recurrencia. Un análisis de los tamaños de los ganglios linfáticos laterales mostró que la mayor dimensión de los ganglios linfáticos laterales ≥ 8 mm antes de la quimiorradioterapia eran el criterio óptimo para la disección de los ganglios linfáticos laterales, con una sensibilidad y especificidad del 92,3% y 78,7%, respectivamente. Utilizando este criterio, el 72,0% de los pacientes podría evitarse la disección de los ganglios linfáticos laterales.LIMITACIONES:Debido a la naturaleza retrospectiva del presente estudio, la selección de pacientes que fueron sometidos a disección de ganglios linfáticos laterales fue sesgada.CONCLUSIÓN:La indicación óptima para la disección de los ganglios linfáticos laterales fue la dimensión mayor de los ganglios linfáticos laterales ≥ 8 mm antes de la quimiorradioterapia. El cáncer se podría erradicar en más del 30% de los pacientes con metástasis en los ganglios linfáticos laterales disecando los ganglios linfáticos laterales metastásicos. Consulte Video Resumen en http://links.lww.com/DCR/B428., (Copyright © The ASCRS 2020.)
- Published
- 2021
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36. Epithelial-mesenchymal transition and metastatic ability of CD133 + colorectal cancer stem-like cells under hypoxia.
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Okada M, Kawai K, Sonoda H, Shiratori H, Kishikawa J, Nagata H, Nozawa H, Sasaki K, Kaneko M, Murono K, Emoto S, Iida Y, Ishii H, Yokoyama Y, Anzai H, Hasegawa K, and Ishihara S
- Abstract
Although CD133 is a representative cancer stem cell marker, its function in tumor aggressiveness under hypoxia remains unclear. Therefore, the present study aimed to investigate the associations between CD133, the epithelial-mesenchymal transition and distant metastasis in colorectal cancer. CD133
+ and CD133- cells were isolated from a single colorectal cancer cell line LoVo, and their adhesive and migratory properties were compared under hypoxic conditions. Immunostaining analysis was performed to determine CD133 expression in clinical samples of primary tumors, as well as liver and peritoneal metastases. Under hypoxia, the expression levels of hypoxia-inducible factor (HIF)-1α and the epithelial-mesenchymal transition markers N-cadherin and vimentin were significantly higher in the CD133+ compared with those in the CD133- cells. Furthermore, the migratory ability of the CD133+ cells was higher compared with that of the CD133- cells under hypoxia. By contrast, the expression levels of β1 integrin were significantly lower in the CD133+ cells under hypoxia compared with those in the CD133- cells. Immunohistochemical analysis of clinical samples revealed that the levels of CD133 expression in metastatic tissues from the liver were significantly higher compared with those in the corresponding primary tumors, whereas CD133 expression levels in peritoneal metastatic tissues were significantly lower compared with those in the corresponding primary tumors. In conclusion, compared with the CD133- cells, the CD133+ colorectal cancer cells exhibited enhanced levels of HIF-1α expression and tumor cell migration during hypoxia. This was associated with an increased ability of epithelial-mesenchymal transition, possibly leading to the acquisition of an increased hematogenous metastatic potential and eventually resulting in liver metastasis. High β1 integrin expression levels in the CD133- cells under hypoxia may serve a key role in cell adhesion to the peritoneum, resulting in peritoneal metastasis., (Copyright: © Okada et al.)- Published
- 2021
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37. CFAP53 regulates mammalian cilia-type motility patterns through differential localization and recruitment of axonemal dynein components.
- Author
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Ide T, Twan WK, Lu H, Ikawa Y, Lim LX, Henninger N, Nishimura H, Takaoka K, Narasimhan V, Yan X, Shiratori H, Roy S, and Hamada H
- Subjects
- Animals, Axonemal Dyneins genetics, Axoneme genetics, Carrier Proteins genetics, Carrier Proteins metabolism, Cilia genetics, Embryo, Mammalian physiology, Embryo, Mammalian ultrastructure, Ependyma embryology, Ependyma metabolism, Ependyma physiology, Fluorescent Antibody Technique, Genotype, Immunoprecipitation, Mice, Mice, Knockout, Microscopy, Electron, Transmission, Microtubules genetics, Mutation, Phenotype, Trachea embryology, Trachea metabolism, Trachea physiology, Trachea ultrastructure, Axonemal Dyneins metabolism, Axoneme metabolism, Biological Transport, Active genetics, Cell Movement genetics, Cilia metabolism, Embryo, Mammalian metabolism, Microtubules metabolism
- Abstract
Motile cilia can beat with distinct patterns, but how motility variations are regulated remain obscure. Here, we have studied the role of the coiled-coil protein CFAP53 in the motility of different cilia-types in the mouse. While node (9+0) cilia of Cfap53 mutants were immotile, tracheal and ependymal (9+2) cilia retained motility, albeit with an altered beat pattern. In node cilia, CFAP53 mainly localized at the base (centriolar satellites), whereas it was also present along the entire axoneme in tracheal cilia. CFAP53 associated tightly with microtubules and interacted with axonemal dyneins and TTC25, a dynein docking complex component. TTC25 and outer dynein arms (ODAs) were lost from node cilia, but were largely maintained in tracheal cilia of Cfap53-/- mice. Thus, CFAP53 at the base of node cilia facilitates axonemal transport of TTC25 and dyneins, while axonemal CFAP53 in 9+2 cilia stabilizes dynein binding to microtubules. Our study establishes how differential localization and function of CFAP53 contributes to the unique motion patterns of two important mammalian cilia-types., Competing Interests: The authors have declared that no competing interests exist.
- Published
- 2020
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38. CFAP45 deficiency causes situs abnormalities and asthenospermia by disrupting an axonemal adenine nucleotide homeostasis module.
- Author
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Dougherty GW, Mizuno K, Nöthe-Menchen T, Ikawa Y, Boldt K, Ta-Shma A, Aprea I, Minegishi K, Pang YP, Pennekamp P, Loges NT, Raidt J, Hjeij R, Wallmeier J, Mussaffi H, Perles Z, Elpeleg O, Rabert F, Shiratori H, Letteboer SJ, Horn N, Young S, Strünker T, Stumme F, Werner C, Olbrich H, Takaoka K, Ide T, Twan WK, Biebach L, Große-Onnebrink J, Klinkenbusch JA, Praveen K, Bracht DC, Höben IM, Junger K, Gützlaff J, Cindrić S, Aviram M, Kaiser T, Memari Y, Dzeja PP, Dworniczak B, Ueffing M, Roepman R, Bartscherer K, Katsanis N, Davis EE, Amirav I, Hamada H, and Omran H
- Subjects
- Adolescent, Adult, Animals, Asthenozoospermia pathology, Axoneme ultrastructure, CRISPR-Cas Systems genetics, Cilia metabolism, Cilia ultrastructure, Cytoskeletal Proteins genetics, DNA Mutational Analysis, Disease Models, Animal, Epididymis pathology, Female, Flagella metabolism, Flagella ultrastructure, Humans, Loss of Function Mutation, Male, Mice, Mice, Knockout, Middle Aged, Planarians cytology, Planarians genetics, Planarians metabolism, Respiratory Mucosa cytology, Respiratory Mucosa pathology, Situs Inversus diagnostic imaging, Situs Inversus pathology, Sperm Motility genetics, Tomography, X-Ray Computed, Exome Sequencing, Adenine Nucleotides metabolism, Asthenozoospermia genetics, Cytoskeletal Proteins deficiency, Situs Inversus genetics
- Abstract
Axonemal dynein ATPases direct ciliary and flagellar beating via adenosine triphosphate (ATP) hydrolysis. The modulatory effect of adenosine monophosphate (AMP) and adenosine diphosphate (ADP) on flagellar beating is not fully understood. Here, we describe a deficiency of cilia and flagella associated protein 45 (CFAP45) in humans and mice that presents a motile ciliopathy featuring situs inversus totalis and asthenospermia. CFAP45-deficient cilia and flagella show normal morphology and axonemal ultrastructure. Proteomic profiling links CFAP45 to an axonemal module including dynein ATPases and adenylate kinase as well as CFAP52, whose mutations cause a similar ciliopathy. CFAP45 binds AMP in vitro, consistent with structural modelling that identifies an AMP-binding interface between CFAP45 and AK8. Microtubule sliding of dyskinetic sperm from Cfap45
-/- mice is rescued with the addition of either AMP or ADP with ATP, compared to ATP alone. We propose that CFAP45 supports mammalian ciliary and flagellar beating via an adenine nucleotide homeostasis module.- Published
- 2020
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39. Role of Ca 2+ transients at the node of the mouse embryo in breaking of left-right symmetry.
- Author
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Mizuno K, Shiozawa K, Katoh TA, Minegishi K, Ide T, Ikawa Y, Nishimura H, Takaoka K, Itabashi T, Iwane AH, Nakai J, Shiratori H, and Hamada H
- Abstract
Immotile cilia sense extracellular signals such as fluid flow, but whether Ca
2+ plays a role in flow sensing has been unclear. Here, we examined the role of ciliary Ca2+ in the flow sensing that initiates the breaking of left-right (L-R) symmetry in the mouse embryo. Intraciliary and cytoplasmic Ca2+ transients were detected in the crown cells at the node. These Ca2+ transients showed L-R asymmetry, which was lost in the absence of fluid flow or the PKD2 channel. Further characterization allowed classification of the Ca2+ transients into two types: cilium-derived, L-R-asymmetric transients (type 1) and cilium-independent transients without an L-R bias (type 2). Type 1 intraciliary transients occurred preferentially at the left posterior region of the node, where L-R symmetry breaking takes place. Suppression of intraciliary Ca2+ transients delayed L-R symmetry breaking. Our results implicate cilium-derived Ca2+ transients in crown cells in initiation of L-R symmetry breaking in the mouse embryo., (Copyright © 2020 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works. Distributed under a Creative Commons Attribution NonCommercial License 4.0 (CC BY-NC).)- Published
- 2020
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40. Loss of PYCR2 Causes Neurodegeneration by Increasing Cerebral Glycine Levels via SHMT2.
- Author
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Escande-Beillard N, Loh A, Saleem SN, Kanata K, Hashimoto Y, Altunoglu U, Metoska A, Grandjean J, Ng FM, Pomp O, Baburajendran N, Wong J, Hill J, Beillard E, Cozzone P, Zaki M, Kayserili H, Hamada H, Shiratori H, and Reversade B
- Subjects
- Adolescent, Animals, Cerebral Cortex pathology, Child, Preschool, Female, Hereditary Central Nervous System Demyelinating Diseases genetics, Hereditary Central Nervous System Demyelinating Diseases metabolism, Humans, Infant, Male, Mice, Mice, Knockout, Nerve Degeneration genetics, Nerve Degeneration metabolism, Nerve Degeneration pathology, Pedigree, Pyrroline Carboxylate Reductases deficiency, Cerebral Cortex metabolism, Glycine metabolism, Glycine Hydroxymethyltransferase metabolism, Hereditary Central Nervous System Demyelinating Diseases pathology, Pyrroline Carboxylate Reductases genetics
- Abstract
Patients lacking PYCR2, a mitochondrial enzyme that synthesizes proline, display postnatal degenerative microcephaly with hypomyelination. Here we report the crystal structure of the PYCR2 apo-enzyme and show that a novel germline p.Gly249Val mutation lies at the dimer interface and lowers its enzymatic activity. We find that knocking out Pycr2 in mice phenocopies the human disorder and depletes PYCR1 levels in neural lineages. In situ quantification of neurotransmitters in the brains of PYCR2 mutant mice and patients revealed a signature of encephalopathy driven by excessive cerebral glycine. Mechanistically, we demonstrate that loss of PYCR2 upregulates SHMT2, which is responsible for glycine synthesis. This hyperglycemia could be partially reversed by SHMT2 knockdown, which rescued the axonal beading and neurite lengths of cultured Pycr2 knockout neurons. Our findings identify the glycine metabolic pathway as a possible intervention point to alleviate the neurological symptoms of PYCR2-mutant patients., Competing Interests: Declaration of Interests The authors declare no competing interests, (Copyright © 2020 Elsevier Inc. All rights reserved.)
- Published
- 2020
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41. Risk factors and therapeutic significance of inguinal lymph node metastasis in advanced lower rectal cancer.
- Author
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Shiratori H, Nozawa H, Kawai K, Hata K, Tanaka T, Kaneko M, Emoto S, Sonoda H, and Ishihara S
- Subjects
- Aged, Disease-Free Survival, Female, Humans, Lymph Nodes pathology, Male, Middle Aged, Multivariate Analysis, Neoplasm Staging, Prognosis, Rectal Neoplasms surgery, Rectum pathology, Rectum surgery, Risk Factors, Inguinal Canal pathology, Lymphatic Metastasis pathology, Rectal Neoplasms pathology
- Abstract
Purpose: This study aimed to clarify predictors and therapeutic significance of inguinal lymph node metastasis (ILNM) in patients with rectal cancer., Methods: Patients with rectal adenocarcinoma invading the anal canal who underwent curative surgery between 2003 and 2019 were retrospectively reviewed. Synchronous and metachronous lymph node (LN) metastasis were collectively defined as final nodal metastasis (f-LNM). Factors associated with f-LNM were analyzed. Moreover, the "modified therapeutic value index," defined by multiplication of the frequency of f-LNM by the 5-year overall survival rate for patients who received treatment for f-LNM, was calculated for each LN area., Results: A total of 145 patients were enrolled (16 patients with f-ILNM). To predict f-ILNM, the cutoff of the inguinal lymph node (ILN) diameter of 8.5 mm gave an area under the curve of 0.889. Dentate line involvement (odds ratio 33.4) and ILN larger than the cutoff of 8 mm (odds ratio 11.9) were independently associated with f-ILNM. The modified therapeutic value indices of the inguinal, lateral pelvic, and mesorectal LNs in the entire population were 6.1, 8.2, and 20.3 points, respectively. In patients with dentate line invasion by cancer, the index of the ILN increased to 11.7 points. In patients with an ILN > 8 mm, the index further increased to 21.1 points., Conclusion: Dentate line involvement and ILN > 8 mm predicted the development of ILNM in patients with rectal cancer invading the anal canal. Treatment of the ILN should be considered for patients with the above predictors given the significant therapeutic outcomes.
- Published
- 2020
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42. Metastatic role of mammalian target of rapamycin signaling activation by chemoradiotherapy in advanced rectal cancer.
- Author
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Shiratori H, Kawai K, Okada M, Nozawa H, Hata K, Tanaka T, Nishikawa T, Shuno Y, Sasaki K, Kaneko M, Murono K, Emoto S, Ishii H, Sonoda H, Ushiku T, and Ishihara S
- Subjects
- Aged, Cell Line, Tumor, Cell Movement drug effects, Cell Movement radiation effects, Cell Proliferation drug effects, Cell Proliferation radiation effects, Chemoradiotherapy, Adjuvant adverse effects, Disease-Free Survival, Female, Gene Expression Regulation, Neoplastic drug effects, Gene Expression Regulation, Neoplastic radiation effects, Humans, Male, Middle Aged, Neoplasm Metastasis, Rectal Neoplasms genetics, Rectal Neoplasms pathology, Rectal Neoplasms radiotherapy, Signal Transduction drug effects, Signal Transduction radiation effects, Rectal Neoplasms drug therapy, Ribosomal Protein S6 genetics, TOR Serine-Threonine Kinases genetics, Tumor Suppressor Protein p53 genetics
- Abstract
Postoperative distant metastasis dramatically affects rectal cancer patients who have undergone neoadjuvant chemoradiotherapy (NACRT). Here, we clarified the association between NACRT-mediated mammalian target of rapamycin (mTOR) signaling pathway activation and rectal cancer metastatic potential. We performed immunohistochemistry for phosphorylated mTOR (p-mTOR) and phosphorylated S6 (p-S6) on surgical specimen blocks from 98 rectal cancer patients after NACRT (cohort 1) and 80 colorectal cancer patients without NACRT (cohort 2). In addition, we investigated the association between mTOR pathway activity, affected by irradiation, and the migration ability of colorectal cancer cells in vitro. Based on the results of the clinical study, p-mTOR was significantly overexpressed in cohort 1 (with NACRT) as compared to levels in cohort 2 (without NACRT) (P < .001). High p-mTOR and p-S6 levels correlated with the development of distant metastasis only in cohort 1. Specifically, high p-S6 expression (HR 4.51, P = .002) and high pathological T-stage (HR 3.73, P = .020) after NACRT were independent predictors of the development of distant metastasis. In vitro, p-S6 levels and migration ability increased after irradiation in SW480 cells (TP53 mutation-type) but decreased in LoVo cells (TP53 wild-type), suggesting that irradiation modulates mTOR signaling and migration through cell type-dependent mechanisms. We next assessed the expression level of p53 by immunostaining in cohort 1 and demonstrated that p-S6 was overexpressed in samples with high p53 expression as compared to levels in samples with low p53 expression (P = .008). In conclusion, p-S6 levels after NACRT correlate with postoperative distant metastasis in rectal cancer patients, suggesting that chemoradiotherapy might modulate the mTOR signaling pathway, promoting metastasis., (© 2020 The Authors. Cancer Science published by John Wiley & Sons Australia, Ltd on behalf of Japanese Cancer Association.)
- Published
- 2020
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43. Light-inducible carotenoid production controlled by a MarR-type regulator in Corynebacterium glutamicum.
- Author
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Sumi S, Suzuki Y, Matsuki T, Yamamoto T, Tsuruta Y, Mise K, Kawamura T, Ito Y, Shimada Y, Watanabe E, Watanabe S, Toriyabe M, Takano Shiratori H, Ueda K, and Takano H
- Subjects
- Amino Acid Sequence, Bacterial Proteins metabolism, Base Sequence, Corynebacterium glutamicum metabolism, Multigene Family genetics, Promoter Regions, Genetic genetics, Reverse Transcriptase Polymerase Chain Reaction, Transcription Initiation Site, Bacterial Proteins genetics, Carotenoids metabolism, Corynebacterium glutamicum genetics, Gene Expression Regulation, Bacterial radiation effects, Light, Transcription, Genetic radiation effects
- Abstract
Carotenoid production in some non-phototropic bacteria occurs in a light-dependent manner to protect cells from photo-oxidants. Knowledge regarding the transcriptional regulator involved in the light-dependent production of carotenoids of non-phototrophic bacteria has been mainly confined to coenzyme B
12 -based photo-sensitive regulator CarH/LitR family proteins belonging to a MerR family transcriptional regulator. In this study, we found that bacteria belonging to Micrococcales and Corynebacteriales exhibit light-dependent carotenoid-like pigment production including an amino acid-producer Corynebacterium glutamicum AJ1511. CrtR is a putative MarR family transcriptional regulator located in the divergent region of a carotenoid biosynthesis gene cluster in the genome of those bacteria. A null mutant for crtR of C. glutamicum AJ1511 exhibited constitutive production of carotenoids independent of light. A complemented strain of the crtR mutant produced carotenoids in a light-dependent manner. Transcriptional analysis revealed that the expression of carotenoid biosynthesis genes is regulated in a light-dependent manner in the wild type, while the transcription was upregulated in the crtR mutant irrespective of light. In vitro experiments demonstrated that a recombinant CrtR protein binds to the specific sequences within the intergenic region of crtR and crtE, which corresponds to -58 to -7 for crtE, and +26 to -28 for crtR with respect to the transcriptional start site, and serves as a repressor for crtE transcription directed by RNA polymerase containing SigA. Taken together, the results indicate that CrtR light-dependently controls the expression of the carotenoid gene cluster in C. glutamicum and probably closely related Actinobacteria.- Published
- 2019
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44. The combination of temsirolimus and chloroquine increases radiosensitivity in colorectal cancer cells.
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Shiratori H, Kawai K, Hata K, Tanaka T, Nishikawa T, Otani K, Sasaki K, Kaneko M, Murono K, Emoto S, Sonoda H, and Nozawa H
- Subjects
- Adaptor Proteins, Signal Transducing metabolism, Antineoplastic Combined Chemotherapy Protocols pharmacology, Autophagy radiation effects, Cell Cycle Proteins metabolism, Cell Line, Tumor, Cell Proliferation drug effects, Cell Proliferation radiation effects, Cell Survival drug effects, Cell Survival radiation effects, Colorectal Neoplasms therapy, HT29 Cells, Humans, Microtubule-Associated Proteins metabolism, Phosphorylation drug effects, Phosphorylation radiation effects, RNA-Binding Proteins metabolism, Ribosomal Protein S6 Kinases metabolism, Sirolimus pharmacology, Autophagy drug effects, Chloroquine pharmacology, Colorectal Neoplasms metabolism, Radiation-Sensitizing Agents pharmacology, Sirolimus analogs & derivatives
- Abstract
The PI3K/AKT/mTOR pathway and autophagy are known to play important roles in cancer radioresistance. The aim of the present study was to investigate whether the combination of temsirolimus (TEM), an mTOR inhibitor, and chloroquine (CQ), an autophagy inhibitor, can increase radiosensitivity in colorectal cancer (CRC) cells. The efficacies of TEM and/or CQ as radiosensitizers were examined using clonogenic assays in CRC cell lines SW480 and HT‑29. The expression levels of the phosphorylated isoforms of S6 and 4E‑BP1, downstream proteins of mTOR, as well as the expression levels of p62 and LC3, autophagy‑related proteins, were assessed by western blot analysis. The formation of acidic organelles was detected in acridine orange‑stained cells. Apoptosis and caspase activity were assessed using flow cytometry. The results revealed that ionizing radiation (IR) activated the downstream proteins of mTOR and induced autophagy. In the clonogenic assays, neither TEM nor CQ influenced the efficacy of IR, whereas their combination significantly increased the dose‑dependent efficacy of IR. TEM inhibited phosphorylation of the downstream proteins of mTOR and induced autophagy. CQ inhibited autophagy in the late phase and did not influence the downstream proteins of mTOR. TEM and CQ inhibited both the phosphorylation of downstream proteins of mTOR and autophagy. Cell death analysis revealed that the combination of TEM and CQ strongly induced apoptosis in cells exposed to IR. In conclusion, the combination of TEM and CQ increased radiosensitivity in CRC cells through co‑inhibition of mTOR and autophagy.
- Published
- 2019
- Full Text
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45. Angiotensin II acutely increases arterial stiffness as monitored by cardio-ankle vascular index (CAVI) in anesthetized rabbits.
- Author
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Sakuma K, Shimoda A, Shiratori H, Komatsu T, Watanabe K, Chiba T, Aimoto M, Nagasawa Y, Hori Y, Shirai K, and Takahara A
- Subjects
- Anesthesia, Angiotensin II physiology, Animals, Dose-Response Relationship, Drug, Epinephrine pharmacology, Male, Pulse Wave Analysis, Rabbits, Angiotensin II pharmacology, Cardio Ankle Vascular Index, Monitoring, Physiologic, Vascular Stiffness drug effects, Vasoconstrictor Agents pharmacology
- Abstract
The cardio-ankle vascular index (CAVI) has been established as a stiffness indicator from thoracic aorta to tibial arteries. To better understand physiological regulatory factors for the arterial stiffness, we assessed effects of angiotensin II and adrenaline on the CAVI in anesthetized rabbits. A hypertensive dose of angiotensin II (300 ng/kg, i.v.) increased the CAVI as well as the heart-ankle pulse wave velocity (haPWV). On the other hand, although a hypertensive dose of adrenaline (1000 ng/kg, i.v.) increased the haPWV, it did not affect the CAVI. These results suggest that angiotensin II may act as a regulatory factor for arterial stiffness., (Copyright © 2019 The Authors. Production and hosting by Elsevier B.V. All rights reserved.)
- Published
- 2019
- Full Text
- View/download PDF
46. Correlations between the Recurrence Patterns and Sizes of Lateral Pelvic Lymph Nodes before and after Chemoradiotherapy in Patients with Lower Rectal Cancer.
- Author
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Shiratori H, Kawai K, Hata K, Tanaka T, Nishikawa T, Sasaki K, Kaneko M, Murono K, Emoto S, Morikawa T, Fukayama M, and Nozawa H
- Subjects
- Aged, Chemoradiotherapy, Combined Modality Therapy, Female, Humans, Lymphatic Metastasis, Male, Middle Aged, Neoplasm Grading, Neoplasm Recurrence, Local, Neoplasm Staging, Prognosis, ROC Curve, Rectal Neoplasms therapy, Treatment Outcome, Lymph Nodes pathology, Pelvis pathology, Rectal Neoplasms pathology
- Abstract
Objective: Factors that predict rectal cancer metastasis to the lungs remain undefined. We investigated whether the lateral pelvic lymph node (LPN) sizes before and after chemoradiotherapy (CRT) correlate with lung metastasis after surgery for lower rectal cancer., Methods: Two hundred and forty patients with lower rectal cancer who received preoperative CRT and curative surgery between 2003 and 2017 were examined. Computed tomography-measured LPN sizes before and after CRT were retrospectively determined by 1 colorectal surgeon who was blinded to the patients' clinical and pathological outcomes., Results: The 5-year cumulative lung metastasis rates were 15.2%. The mean LPN sizes in patients who developed lung metastasis were larger than those in patients who did not (pre-CRT: 8.7 vs. 6.3 mm, p = 0.003; post-CRT: 6.8 vs. 4.5 mm, p = 0.001). The cumulative lung metastasis rate in patients with large LPNs was higher than in those with small LPNs both before and after CRT. On multivariate analysis, lung metastasis was independently correlated with the LPN size only after CRT (hazard ratio [HR]: 5.58), together with the ypT stage (HR: 2.96) and the tumor location (HR: 0.38)., Conclusions: LPN size after CRT is strongly predictive of postoperative lung metastasis in patients with lower rectal cancer., (© 2018 S. Karger AG, Basel.)
- Published
- 2019
- Full Text
- View/download PDF
47. An in vitro test system for compounds that modulate human inflammatory macrophage polarization.
- Author
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Shiratori H, Feinweber C, Luckhardt S, Wallner N, Geisslinger G, Weigert A, and Parnham MJ
- Subjects
- Anti-Inflammatory Agents therapeutic use, Biomarkers metabolism, Cell Culture Techniques, Cell Differentiation immunology, Cells, Cultured, Cytokines genetics, Cytokines immunology, Cytokines metabolism, Down-Regulation, Drug Evaluation, Preclinical methods, Humans, Inflammation immunology, Interferon-gamma immunology, Interleukin-4 immunology, Leukocytes, Mononuclear, Lipopolysaccharides immunology, Macrophages immunology, Macrophages metabolism, RNA, Messenger metabolism, Anti-Inflammatory Agents pharmacology, Cell Differentiation drug effects, Inflammation drug therapy, Macrophages drug effects
- Abstract
Macrophages undergo activation by pathophysiological stimuli to pro-inflammatory and bactericidal, or wound-healing and anti-inflammatory phenotypes, termed M1 or M2, respectively. Dysregulation of the M1-M2 balance is often associated with inflammatory diseases. Therefore, mechanisms of macrophage polarization may reveal new drug targets. We profiled six compounds with claimed modulatory effects on macrophage polarization using peripheral blood monocyte-derived macrophages. Based on the distinct mRNA or protein expression in macrophages stimulated either with M1 [lipopolysaccharide (LPS) + interferon-γ, IFNγ] or M2 interleukin-4 (IL-4) stimuli, we selected a combination of M1 (IL1β, tumor necrosis factor-α,TNFα, CC chemokine receptor 7, CCR7 and CD80) and M2 (chemokine (C-C motif) ligand 22, CCL22, CD200R and mannose receptor C type 1, MRC1) markers to monitor drug effects on "M1 polarization" or cells "pre-polarized to M1". Azithromycin (25-50 μM), tofacitinib (2.5-5 μM), hydroxychloroquine (40 µg/ml) and pioglitazone (15-60 μM) exhibit an anti-inflammatory profile because they downregulated M1 markers and upregulated some M2 markers when given both before and after M1 polarization. Lovastatin given before M1 polarization downregulated M1 marker genes but enhanced the M1 phenotype in macrophages pre-polarized with LPS and IFNγ. Methotrexate (1.25-5 μM) did not modulate macrophage polarization. We have, thus, established a test system suitable to identify novel compounds or repurposed drugs that modulate inflammatory macrophage plasticity. Compounds with potential to reduce expression of molecules involved in inflammatory T cell activation (IL-1β, TNFα, CD80), while enhancing production of a major chemokine involved in recruitment of Tregs (CCL22) may be of interest for treating chronic inflammatory diseases., (Copyright © 2018 Elsevier B.V. All rights reserved.)
- Published
- 2018
- Full Text
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48. Loss of Fam60a, a Sin3a subunit, results in embryonic lethality and is associated with aberrant methylation at a subset of gene promoters.
- Author
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Nabeshima R, Nishimura O, Maeda T, Shimizu N, Ide T, Yashiro K, Sakai Y, Meno C, Kadota M, Shiratori H, Kuraku S, and Hamada H
- Subjects
- Animals, DNA-Binding Proteins chemistry, Gene Expression Regulation, Developmental, Genome, Histone Deacetylases chemistry, Histone Deacetylases genetics, Mice, Mice, Knockout, Promoter Regions, Genetic, Repressor Proteins chemistry, Repressor Proteins genetics, Sin3 Histone Deacetylase and Corepressor Complex, DNA Methylation genetics, DNA-Binding Proteins genetics, Embryonic Development genetics
- Abstract
We have examined the role of Fam60a , a gene highly expressed in embryonic stem cells, in mouse development. Fam60a interacts with components of the Sin3a-Hdac transcriptional corepressor complex, and most Fam60a
-/- embryos manifest hypoplasia of visceral organs and die in utero. Fam60a is recruited to the promoter regions of a subset of genes, with the expression of these genes being either up- or down-regulated in Fam60a-/- embryos. The DNA methylation level of the Fam60a target gene Adhfe1 is maintained at embryonic day (E) 7.5 but markedly reduced at E9.5 in Fam60a-/- embryos, suggesting that DNA demethylation is enhanced in the mutant. Examination of genome-wide DNA methylation identified several differentially methylated regions, which were preferentially hypomethylated, in Fam60a-/- embryos. Our data suggest that Fam60a is required for proper embryogenesis, at least in part as a result of its regulation of DNA methylation at specific gene promoters., Competing Interests: RN, ON, TM, NS, TI, KY, YS, CM, MK, HS, SK, HH No competing interests declared, (© 2018, Nabeshima et al.)- Published
- 2018
- Full Text
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49. THP-1 and human peripheral blood mononuclear cell-derived macrophages differ in their capacity to polarize in vitro.
- Author
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Shiratori H, Feinweber C, Luckhardt S, Linke B, Resch E, Geisslinger G, Weigert A, and Parnham MJ
- Subjects
- Biomarkers analysis, Cell Differentiation drug effects, Cell Differentiation immunology, Cell Line, Humans, Interferon-gamma pharmacology, Interleukin-10 pharmacology, Interleukin-4 pharmacology, Lipopolysaccharides pharmacology, Membrane Proteins genetics, Membrane Proteins metabolism, Cell Polarity immunology, Macrophage Activation immunology, Macrophages immunology, Phagocytosis immunology, Staphylococcus aureus immunology
- Abstract
Macrophages (Mφ) undergo activation to pro-inflammatory (M1) or anti-inflammatory (M2) phenotypes in response to pathophysiologic stimuli and dysregulation of the M1-M2 balance is often associated with diseases. Therefore, studying mechanisms of macrophage polarization may reveal new drug targets. Human Mφ polarization is generally studied in primary monocyte-derived Mφ (PBMC Mφ) and THP-1-derived Mφ (THP-1 Mφ). We compared the polarization profile of THP-1 Mφ with that of PBMC Mφ to assess the alternative use of THP-1 for polarization studies. Cellular morphology, the expression profiles of 18 genes and 4 cell surface proteins, and phagocytosis capacity for apoptotic cells and S. aureus bioparticles were compared between these Mφ, activated towards M1, M2a, or M2c subsets by stimulation with LPS/IFNγ, IL-4, or IL-10, respectively, for 6h, 24h and 48h. The Mφ types are unique in morphology and basal expression of polarization marker genes, particularly CCL22, in a pre-polarized state, and were differentially sensitive to polarization stimuli. Generally, M1 markers were instantly induced and gradually decreased, while M2 markers were markedly expressed at a later time. Expression profiles of M1 markers were similar between the polarized Mφ types, but M2a cell surface markers demonstrated an IL-4-dependent upregulation only in PBMC Mφ. Polarized THP-1 Mφ but not PBMC Mφ showed distinctive phagocytic capacity for apoptotic cells and bacterial antigens, respectively. In conclusion, our data suggest that THP-1 may be useful for performing studies involving phagocytosis and M1 polarization, rather than M2 polarization., (Copyright © 2017 Elsevier Ltd. All rights reserved.)
- Published
- 2017
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50. Perforation of jejunal diverticulum with ectopic pancreas.
- Author
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Shiratori H, Nishikawa T, Shintani Y, Murono K, Sasaki K, Yasuda K, Otani K, Tanaka T, Kiyomatsu T, Hata K, Kawai K, Nozawa H, Ishihara S, Fukayama M, and Watanabe T
- Subjects
- Aged, 80 and over, Choristoma diagnostic imaging, Diverticulum diagnostic imaging, Diverticulum surgery, Female, Humans, Intestinal Perforation diagnostic imaging, Intestinal Perforation surgery, Jejunal Diseases diagnostic imaging, Jejunal Diseases surgery, Tomography, X-Ray Computed, Choristoma complications, Diverticulum complications, Intestinal Perforation etiology, Jejunal Diseases etiology, Pancreas
- Abstract
Perforation of jejunal diverticulum is a rare complication. Here, we report a case of jejunal diverticulum penetration with surrounding ectopic pancreas. An 83-year-old female patient was admitted to our department with acute onset of severe abdominal pain lasting for half a day. Abdominal computed tomography showed outpouching of the small intestine that contained air/fluid, with multiple surrounding air bubbles in the mesentery of the small intestine. She was diagnosed with penetration of the small intestine, and an emergency laparotomy was indicated. The penetrated jejunal diverticulum was identified ~20-cm distal to the ligament of Treitz. Partial resection of the jejunum was performed, and her postoperative course was uneventful. The pathological findings confirmed diverticulum penetration into the mesentery and severe inflammation at the site, with surrounding ectopic pancreas. Furthermore, the pancreatic ducts were opened through the penetrated diverticulum. This rare case shows that the ectopic pancreas might have caused penetration of jejunal diverticulum owing to the pancreatic duct opening through the diverticulum.
- Published
- 2017
- Full Text
- View/download PDF
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