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3. Predicting spring phenology in deciduous broadleaf forests: NEON phenology forecasting community challenge

Author

Wheeler, Kathryn I., Dietze, Michael C., LeBauer, David, Peters, Jody A., Richardson, Andrew D., Ross, Arun A., Thomas, R. Quinn, Zhu, Kai, Bhat, Uttam, Munch, Stephan, Floreani Buzbee, Raphaela, Chen, Min, Goldstein, Benjamin, Guo, Jessica, Hao, Dalei, Jones, Chris, Kelly-Fair, Mira, Liu, Haoran, Malmborg, Charlotte, Neupane, Naresh, Pal, Debasmita, Shirey, Vaughn, Song, Yiluan, Steen, McKalee, Vance, Eric A., Woelmer, Whitney M., Wynne, Jacob H., and Zachmann, Luke

Published
2024
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5. LepTraits 1.0 A globally comprehensive dataset of butterfly traits

Author

Shirey, Vaughn, Larsen, Elise, Doherty, Andra, Kim, Clifford A., Al-Sulaiman, Faisal T., Hinolan, Jomar D., Itliong, Micael Gabriel A., Naive, Mark Arcebal K., Ku, Minji, Belitz, Michael, Jeschke, Grace, Barve, Vijay, Lamas, Gerardo, Kawahara, Akito Y., Guralnick, Robert, Pierce, Naomi E., Lohman, David J., and Ries, Leslie

Published
2022
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6. Logistical and preference bias in participatory science butterfly data.

Author

Goldstein, Benjamin R, Stoudt, Sara, Lewthwaite, Jayme MM, Shirey, Vaughn, Mendoza, Eros, and Guzman, Laura Melissa

Subjects
DATA science, BUTTERFLIES, SPECIES
Abstract

The volume of and interest in unstructured participatory science data has increased dramatically in recent years. However, unstructured participatory science data contain taxonomic biases—encounters with some species are more likely to be reported than encounters with others. Taxonomic biases are driven by human preferences for different species and by logistical factors that make observing certain species challenging. We investigated taxonomic bias in reports of butterflies by characterizing differences between a dedicated participatory semi‐structured dataset, eButterfly, and a popular unstructured dataset, iNaturalist, in spatiotemporally explicit models. Across 194 butterfly species, we found that 53 species were overreported and 34 species were underreported in opportunistic data. Ease of identification and feature diversity were significantly associated with overreporting in opportunistic sampling, and strong patterns in overreporting by family were also detected. Quantifying taxonomic biases not only helps us understand how humans engage with nature but also is necessary to generate robust inference from unstructured participatory data. [ABSTRACT FROM AUTHOR]

Published
2024
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12. Species-specific ecological traits, phylogeny, and geography underpin vulnerability to population declines for North American birds.

Author

Stevens, Henry C., Smith, Adam C., Buechley, Evan R., Şekercioğlu, Çağan H., Shirey, Vaughn, Rosenberg, Kenneth V., Sorte, Frank A. La, Tallamy, Douglas, and Marra, Peter P.

Subjects
SPECIES, ECOLOGY, PHYLOGENY, BAYESIAN analysis, BIRDS of prey
Abstract

Copyright of Ornithological Applications is the property of Oxford University Press / USA and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)

Published
2024
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13. Rising minimum temperatures contribute to 50 years of occupancy decline among cold‐adapted Arctic and boreal butterflies in North America.

Author

Shirey, Vaughn, Neupane, Naresh, Guralnick, Robert, and Ries, Leslie

Subjects
*BUTTERFLIES, *CLIMATE change, *SPECIES distribution, *TUNDRAS
Abstract

Global climate change has been identified as a potential driver of observed insect declines, yet in many regions, there are critical data gaps that make it difficult to assess how communities are responding to climate change. Poleward regions are of particular interest because warming is most rapid while biodiversity data are most sparse. Building on recent advances in occupancy modeling of presence‐only data, we reconstructed 50 years (1970–2019) of butterfly occupancy trends in response to rising minimum temperatures in one of the most under‐sampled regions of North America. Among 90 modeled species, we found that cold‐adapted species are far more often in decline compared with their warm‐adapted, more southernly distributed counterparts. Furthermore, in a post hoc analysis using species' traits, we find that species' range‐wide average annual temperature is the only consistent predictor of occupancy changes. Species with warmer ranges were most likely to be increasing in occupancy. This trend results in the majority of butterflies increasing in occupancy probability over the last 50 years. Our results provide the first look at macroscale butterfly biodiversity shifts in high‐latitude North America. These results highlight the potential of leveraging the wealth of presence‐only data, the most abundant source of biodiversity data, for inferring changes in species distributions. [ABSTRACT FROM AUTHOR]

Published
2024
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14. Selection on size has generated distinctive paired wing flight systems for butterfly flight and migration

Author

Childers, Richard Rabideau, primary, Cai, Liming, additional, Chowdhury, Shawan, additional, Crall, James, additional, Cornwall, Mark, additional, Sipe, Rachel Hawkins, additional, Maier, Crystal, additional, Maunsell, Sarah, additional, Talavera, Gerard, additional, Tsai, Cheng-Chia, additional, Angier, Katherine, additional, Barve, Vijay, additional, Dankowicz, Evan, additional, Hinolan, Jomar, additional, Itliong, Micael, additional, Naive, Mark Arcebal, additional, Johnson, Gunnar, additional, Matos, Francisco, additional, Morgan, Valentina, additional, Plotkin, David, additional, Salcedo, Mary, additional, Shirey, Vaughn, additional, Vermilya, Kimberly, additional, Winstanley, Jalen, additional, Wu, Amy, additional, Guralnick, Robert, additional, Kawahara, Akito, additional, Lohman, David, additional, Ries, Leslie, additional, Soucy, Edward, additional, Vila, Roger, additional, Yu, Nanfang, additional, Pierce, Naomi, additional, and Chan, Wei-Ping, additional

Published
2023
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15. A global phylogeny of butterflies reveals their evolutionary history, ancestral hosts and biogeographic origins

Author

Kawahara, Akito Y., primary, Storer, Caroline, additional, Carvalho, Ana Paula S., additional, Plotkin, David M., additional, Condamine, Fabien L., additional, Braga, Mariana P., additional, Ellis, Emily A., additional, St Laurent, Ryan A., additional, Li, Xuankun, additional, Barve, Vijay, additional, Cai, Liming, additional, Earl, Chandra, additional, Frandsen, Paul B., additional, Owens, Hannah L., additional, Valencia-Montoya, Wendy A., additional, Aduse-Poku, Kwaku, additional, Toussaint, Emmanuel F. A., additional, Dexter, Kelly M., additional, Doleck, Tenzing, additional, Markee, Amanda, additional, Messcher, Rebeccah, additional, Nguyen, Y-Lan, additional, Badon, Jade Aster T., additional, Benítez, Hugo A., additional, Braby, Michael F., additional, Buenavente, Perry A. C., additional, Chan, Wei-Ping, additional, Collins, Steve C., additional, Rabideau Childers, Richard A., additional, Dankowicz, Even, additional, Eastwood, Rod, additional, Fric, Zdenek F., additional, Gott, Riley J., additional, Hall, Jason P. W., additional, Hallwachs, Winnie, additional, Hardy, Nate B., additional, Sipe, Rachel L. Hawkins, additional, Heath, Alan, additional, Hinolan, Jomar D., additional, Homziak, Nicholas T., additional, Hsu, Yu-Feng, additional, Inayoshi, Yutaka, additional, Itliong, Micael G. A., additional, Janzen, Daniel H., additional, Kitching, Ian J., additional, Kunte, Krushnamegh, additional, Lamas, Gerardo, additional, Landis, Michael J., additional, Larsen, Elise A., additional, Larsen, Torben B., additional, Leong, Jing V., additional, Lukhtanov, Vladimir, additional, Maier, Crystal A., additional, Martinez, Jose I., additional, Martins, Dino J., additional, Maruyama, Kiyoshi, additional, Maunsell, Sarah C., additional, Mega, Nicolás Oliveira, additional, Monastyrskii, Alexander, additional, Morais, Ana B. B., additional, Müller, Chris J., additional, Naive, Mark Arcebal K., additional, Nielsen, Gregory, additional, Padrón, Pablo Sebastián, additional, Peggie, Djunijanti, additional, Romanowski, Helena Piccoli, additional, Sáfián, Szabolcs, additional, Saito, Motoki, additional, Schröder, Stefan, additional, Shirey, Vaughn, additional, Soltis, Doug, additional, Soltis, Pamela, additional, Sourakov, Andrei, additional, Talavera, Gerard, additional, Vila, Roger, additional, Vlasanek, Petr, additional, Wang, Houshuai, additional, Warren, Andrew D., additional, Willmott, Keith R., additional, Yago, Masaya, additional, Jetz, Walter, additional, Jarzyna, Marta A., additional, Breinholt, Jesse W., additional, Espeland, Marianne, additional, Ries, Leslie, additional, Guralnick, Robert P., additional, Pierce, Naomi E., additional, and Lohman, David J., additional

Published
2023
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17. A global phylogeny of butterflies reveals their evolutionary history, ancestral hosts and biogeographic origins

Author

Kawahara, Akito Y., Storer, Caroline, Carvalho, Ana Paula S., Plotkin, David M., Condamine, Fabien L., Braga, Mariana P., Ellis, Emily A., St Laurent, Ryan A., Li, Xuankun, Barve, Vijay, Cai, Liming, Earl, Chandra, Frandsen, Paul B., Owens, Hannah L., Valencia-Montoya, Wendy A., Aduse-Poku, Kwaku, Toussaint, Emmanuel F. A., Dexter, Kelly M., Doleck, Tenzing, Markee, Amanda, Messcher, Rebeccah, Nguyen, Y-Lan, Badon, Jade Aster T., Benítez, Hugo A., Braby, Michael F., Buenavente, Perry A. C., Chan, Wei-Ping, Collins, Steve C., Childers, Richard A. Rabideau, Dankowicz, Even, Eastwood, Rod, Fric, Zdenek F., Gott, Riley J., Hall, Jason P. W., Hallwachs, Winnie, Hardy, Nate B., Sipe, Rachel L. Hawkins, Heath, Alan, Hinolan, Jomar D., Homziak, Nicholas T., Hsu, Yu-Feng, Inayoshi, Yutaka, Itliong, Micael G. A., Janzen, Daniel H., Kitching, Ian J., Kunte, Krushnamegh, Lamas, Gerardo, Landis, Michael J., Larsen, Elise A., Larsen, Torben B., Leong, Jing V., Lukhtanov, Vladimir, Maier, Crystal A., Martinez, Jose I., Martins, Dino J., Maruyama, Kiyoshi, Maunsell, Sarah C., Mega, Nicolás Oliveira, Monastyrskii, Alexander, Morais, Ana B. B., Müller, Chris J., Naive, Mark Arcebal K., Nielsen, Gregory, Padrón, Pablo Sebastián, Peggie, Djunijanti, Romanowski, Helena Piccoli, Sáfián, Szabolcs, Saito, Motoki, Schröder, Stefan, Shirey, Vaughn, Soltis, Doug, Soltis, Pamela, Sourakov, Andrei, Talavera, Gerard, Vila, Roger, Vlasanek, Petr, Wang, Houshuai, Warren, Andrew D., Willmott, Keith R., Yago, Masaya, Jetz, Walter, Jarzyna, Marta A., Breinholt, Jesse W., Espeland, Marianne, Ries, Leslie, Guralnick, Robert P., Pierce, Naomi E., Lohman, David J., Kawahara, Akito Y., Storer, Caroline, Carvalho, Ana Paula S., Plotkin, David M., Condamine, Fabien L., Braga, Mariana P., Ellis, Emily A., St Laurent, Ryan A., Li, Xuankun, Barve, Vijay, Cai, Liming, Earl, Chandra, Frandsen, Paul B., Owens, Hannah L., Valencia-Montoya, Wendy A., Aduse-Poku, Kwaku, Toussaint, Emmanuel F. A., Dexter, Kelly M., Doleck, Tenzing, Markee, Amanda, Messcher, Rebeccah, Nguyen, Y-Lan, Badon, Jade Aster T., Benítez, Hugo A., Braby, Michael F., Buenavente, Perry A. C., Chan, Wei-Ping, Collins, Steve C., Childers, Richard A. Rabideau, Dankowicz, Even, Eastwood, Rod, Fric, Zdenek F., Gott, Riley J., Hall, Jason P. W., Hallwachs, Winnie, Hardy, Nate B., Sipe, Rachel L. Hawkins, Heath, Alan, Hinolan, Jomar D., Homziak, Nicholas T., Hsu, Yu-Feng, Inayoshi, Yutaka, Itliong, Micael G. A., Janzen, Daniel H., Kitching, Ian J., Kunte, Krushnamegh, Lamas, Gerardo, Landis, Michael J., Larsen, Elise A., Larsen, Torben B., Leong, Jing V., Lukhtanov, Vladimir, Maier, Crystal A., Martinez, Jose I., Martins, Dino J., Maruyama, Kiyoshi, Maunsell, Sarah C., Mega, Nicolás Oliveira, Monastyrskii, Alexander, Morais, Ana B. B., Müller, Chris J., Naive, Mark Arcebal K., Nielsen, Gregory, Padrón, Pablo Sebastián, Peggie, Djunijanti, Romanowski, Helena Piccoli, Sáfián, Szabolcs, Saito, Motoki, Schröder, Stefan, Shirey, Vaughn, Soltis, Doug, Soltis, Pamela, Sourakov, Andrei, Talavera, Gerard, Vila, Roger, Vlasanek, Petr, Wang, Houshuai, Warren, Andrew D., Willmott, Keith R., Yago, Masaya, Jetz, Walter, Jarzyna, Marta A., Breinholt, Jesse W., Espeland, Marianne, Ries, Leslie, Guralnick, Robert P., Pierce, Naomi E., and Lohman, David J.

Abstract

Butterflies are a diverse and charismatic insect group that are thought to have evolved with plants and dispersed throughout the world in response to key geological events. However, these hypotheses have not been extensively tested because a comprehensive phylogenetic framework and datasets for butterfly larval hosts and global distributions are lacking. We sequenced 391 genes from nearly 2,300 butterfly species, sampled from 90 countries and 28 specimen collections, to reconstruct a new phylogenomic tree of butterflies representing 92% of all genera. Our phylogeny has strong support for nearly all nodes and demonstrates that at least 36 butterfly tribes require reclassification. Divergence time analyses imply an origin ~100 million years ago for butterflies and indicate that all but one family were present before the K/Pg extinction event. We aggregated larval host datasets and global distribution records and found that butterflies are likely to have first fed on Fabaceae and originated in what is now the Americas. Soon after the Cretaceous Thermal Maximum, butterflies crossed Beringia and diversified in the Palaeotropics. Our results also reveal that most butterfly species are specialists that feed on only one larval host plant family. However, generalist butterflies that consume two or more plant families usually feed on closely related plants.

Published
2023

18. A global phylogeny of butterflies reveals their evolutionary history, ancestral hosts and biogeographic origins

Author

Kawahara, Akito Y, Storer, Caroline, Carvalho, Ana Paula S, Plotkin, David M, Condamine, Fabien L, Braga, Mariana P, Ellis, Emily A, St Laurent, Ryan A, Li, Xuankun, Barve, Vijay, Cai, Liming, Earl, Chandra, Frandsen, Paul B, Owens, Hannah L, Valencia-Montoya, Wendy A, Aduse-Poku, Kwaku, Toussaint, Emmanuel FA, Dexter, Kelly M, Doleck, Tenzing, Markee, Amanda, Messcher, Rebeccah, Nguyen, Y-Lan, Badon, Jade Aster T, Benítez, Hugo A, Braby, Michael F, Buenavente, Perry AC, Chan, Wei-Ping, Collins, Steve C, Rabideau Childers, Richard A, Dankowicz, Even, Eastwood, Rod, Fric, Zdenek F, Gott, Riley J, Hall, Jason PW, Hallwachs, Winnie, Hardy, Nate B, Sipe, Rachel L Hawkins, Heath, Alan, Hinolan, Jomar D, Homziak, Nicholas T, Hsu, Yu-Feng, Inayoshi, Yutaka, Itliong, Micael GA, Janzen, Daniel H, Kitching, I, Kunte, Krushnamegh, Lamas, Gerardo, Landis, Michael J, Larsen, Elise A, Larsen, Torben B, Leong, Jing V, Lukhtanov, Vladimir, Maier, Crystal A, Martinez, Jose I, Martins, Dino J, Maruyama, Kiyoshi, Maunsell, Sarah C, Mega, Nicolás Oliveira, Monastyrskii, Alexander, Morais, Ana BB, Müller, Chris J, Naive, Mark Arcebal K, Nielsen, Gregory, Padrón, Pablo Sebastián, Peggie, Djunijanti, Romanowski, Helena Piccoli, Sáfián, Szabolcs, Saito, Motoki, Schröder, Stefan, Shirey, Vaughn, Soltis, Doug, Soltis, Pamela, Sourakov, Andrei, Talavera, Gerard, Vila, Roger, Vlasanek, Petr, Wang, Houshuai, Warren, Andrew D, Willmott, Keith R, Yago, Masaya, Jetz, Walter, Jarzyna, Marta A, Breinholt, Jesse W, Espeland, Marianne, Ries, Leslie, Guralnick, Robert P, Pierce, Naomi E, Lohman, David J, Kawahara, Akito Y, Storer, Caroline, Carvalho, Ana Paula S, Plotkin, David M, Condamine, Fabien L, Braga, Mariana P, Ellis, Emily A, St Laurent, Ryan A, Li, Xuankun, Barve, Vijay, Cai, Liming, Earl, Chandra, Frandsen, Paul B, Owens, Hannah L, Valencia-Montoya, Wendy A, Aduse-Poku, Kwaku, Toussaint, Emmanuel FA, Dexter, Kelly M, Doleck, Tenzing, Markee, Amanda, Messcher, Rebeccah, Nguyen, Y-Lan, Badon, Jade Aster T, Benítez, Hugo A, Braby, Michael F, Buenavente, Perry AC, Chan, Wei-Ping, Collins, Steve C, Rabideau Childers, Richard A, Dankowicz, Even, Eastwood, Rod, Fric, Zdenek F, Gott, Riley J, Hall, Jason PW, Hallwachs, Winnie, Hardy, Nate B, Sipe, Rachel L Hawkins, Heath, Alan, Hinolan, Jomar D, Homziak, Nicholas T, Hsu, Yu-Feng, Inayoshi, Yutaka, Itliong, Micael GA, Janzen, Daniel H, Kitching, I, Kunte, Krushnamegh, Lamas, Gerardo, Landis, Michael J, Larsen, Elise A, Larsen, Torben B, Leong, Jing V, Lukhtanov, Vladimir, Maier, Crystal A, Martinez, Jose I, Martins, Dino J, Maruyama, Kiyoshi, Maunsell, Sarah C, Mega, Nicolás Oliveira, Monastyrskii, Alexander, Morais, Ana BB, Müller, Chris J, Naive, Mark Arcebal K, Nielsen, Gregory, Padrón, Pablo Sebastián, Peggie, Djunijanti, Romanowski, Helena Piccoli, Sáfián, Szabolcs, Saito, Motoki, Schröder, Stefan, Shirey, Vaughn, Soltis, Doug, Soltis, Pamela, Sourakov, Andrei, Talavera, Gerard, Vila, Roger, Vlasanek, Petr, Wang, Houshuai, Warren, Andrew D, Willmott, Keith R, Yago, Masaya, Jetz, Walter, Jarzyna, Marta A, Breinholt, Jesse W, Espeland, Marianne, Ries, Leslie, Guralnick, Robert P, Pierce, Naomi E, and Lohman, David J

Abstract

Butterflies are a diverse and charismatic insect group that are thought to have evolved with plants and dispersed throughout the world in response to key geological events. However, these hypotheses have not been extensively tested because a comprehensive phylogenetic framework and datasets for butterfly larval hosts and global distributions are lacking. We sequenced 391 genes from nearly 2,300 butterfly species, sampled from 90 countries and 28 specimen collections, to reconstruct a new phylogenomic tree of butterflies representing 92% of all genera. Our phylogeny has strong support for nearly all nodes and demonstrates that at least 36 butterfly tribes require reclassification. Divergence time analyses imply an origin ~100 million years ago for butterflies and indicate that all but one family were present before the K/Pg extinction event. We aggregated larval host datasets and global distribution records and found that butterflies are likely to have first fed on Fabaceae and originated in what is now the Americas. Soon after the Cretaceous Thermal Maximum, butterflies crossed Beringia and diversified in the Palaeotropics. Our results also reveal that most butterfly species are specialists that feed on only one larval host plant family. However, generalist butterflies that consume two or more plant families usually feed on closely related plants.

Published
2023

19. A global phylogeny of butterflies reveals their evolutionary history, ancestral hosts and biogeographic origins

Author

National Science Foundation (US), National Geographic Society, Research Council of Norway, Hintelmann Award for Zoological Systematics, European Research Council, Swedish Research Council, Ministerio de Ciencia e Innovación (España), Russian Science Foundation, Ministry of Science and Higher Education of the Russian Federation, Kawahara, Akito Y., Storer, Caroline, Carvalho, Ana Paula S., Plotkin, David M., Condamine, Fabien L., Braga, Mariana P., Ellis, Emily A., St Laurent, Ryan A., Li, Xuankun, Barve, Vijay, Cai, Liming, Earl, Chandra, Frandsen, Paul B., Owens, Hannah L., Valencia-Montoya, Wendy A., Aduse-Poku, Kwaku, Toussaint, Emmanuel F. A., Dexter, Kelly M., Doleck, Tenzing, Markee, Amanda, Messcher, Rebeccah, Nguyen, Y-Lan, Badon, Jade Aster T., Benítez, Hugo A., Braby, Michael F., Buenavente, Perry A. C., Chan, Wei-Ping, Collins, Steve C., Rabideau Childers, Richard A., Dankowicz, Even, Eastwood, Rod, Fric, Zdenek F., Gott, Riley J., Hall, Jason P. W., Hallwachs, Winnie, Hardy, Nate B., Sipe, Rachel L. Hawkins, Heath, Alan, Hinolan, Jomar D., Homziak, Nicholas T., Hsu, Yu-Feng, Inayoshi, Yutaka, Itliong, Micael G. A., Janzen, Daniel H., Kitching, Ian J., Kunte, Krushnamegh, Lamas, Gerardo, Landis, Michael J., Larsen, Elise A., Larsen, Torben B., Leong, Jing V., Lukhtanov, Vladimir, Maier, Crystal A., Martínez, José I., Martins, Dino J., Maruyama, Kiyoshi, Maunsell, Sarah C., Mega, Nicolás Oliveira, Monastyrskii, Alexander, Morais, Ana B., Müller, Chris J., Naive, Mark Arcebal K., Nielsen, Gregory, Padrón, Pablo Sebastián, Peggie, Djunijanti, Romanowski, Helena Piccoli, Sáfián, Szabolcs, Saito, Motoki, Schröder, Stefan, Shirey, Vaughn, Soltis, Doug, Soltis, Pamela, Sourakov, Andrei, Talavera, Gerard, Vila, Roger, Vlasanek, Petr, Wang, Houshuai, Warren, Andrew D., Willmott, K. R., Yago, Masaya, Jetz, Walter, Jarzyna, M.A., Breinholt, Jesse W., Espeland, Marianne, Ries, Leslie, Guralnick, Robert P., Pierce, Naomi E., Lohman, David J., National Science Foundation (US), National Geographic Society, Research Council of Norway, Hintelmann Award for Zoological Systematics, European Research Council, Swedish Research Council, Ministerio de Ciencia e Innovación (España), Russian Science Foundation, Ministry of Science and Higher Education of the Russian Federation, Kawahara, Akito Y., Storer, Caroline, Carvalho, Ana Paula S., Plotkin, David M., Condamine, Fabien L., Braga, Mariana P., Ellis, Emily A., St Laurent, Ryan A., Li, Xuankun, Barve, Vijay, Cai, Liming, Earl, Chandra, Frandsen, Paul B., Owens, Hannah L., Valencia-Montoya, Wendy A., Aduse-Poku, Kwaku, Toussaint, Emmanuel F. A., Dexter, Kelly M., Doleck, Tenzing, Markee, Amanda, Messcher, Rebeccah, Nguyen, Y-Lan, Badon, Jade Aster T., Benítez, Hugo A., Braby, Michael F., Buenavente, Perry A. C., Chan, Wei-Ping, Collins, Steve C., Rabideau Childers, Richard A., Dankowicz, Even, Eastwood, Rod, Fric, Zdenek F., Gott, Riley J., Hall, Jason P. W., Hallwachs, Winnie, Hardy, Nate B., Sipe, Rachel L. Hawkins, Heath, Alan, Hinolan, Jomar D., Homziak, Nicholas T., Hsu, Yu-Feng, Inayoshi, Yutaka, Itliong, Micael G. A., Janzen, Daniel H., Kitching, Ian J., Kunte, Krushnamegh, Lamas, Gerardo, Landis, Michael J., Larsen, Elise A., Larsen, Torben B., Leong, Jing V., Lukhtanov, Vladimir, Maier, Crystal A., Martínez, José I., Martins, Dino J., Maruyama, Kiyoshi, Maunsell, Sarah C., Mega, Nicolás Oliveira, Monastyrskii, Alexander, Morais, Ana B., Müller, Chris J., Naive, Mark Arcebal K., Nielsen, Gregory, Padrón, Pablo Sebastián, Peggie, Djunijanti, Romanowski, Helena Piccoli, Sáfián, Szabolcs, Saito, Motoki, Schröder, Stefan, Shirey, Vaughn, Soltis, Doug, Soltis, Pamela, Sourakov, Andrei, Talavera, Gerard, Vila, Roger, Vlasanek, Petr, Wang, Houshuai, Warren, Andrew D., Willmott, K. R., Yago, Masaya, Jetz, Walter, Jarzyna, M.A., Breinholt, Jesse W., Espeland, Marianne, Ries, Leslie, Guralnick, Robert P., Pierce, Naomi E., and Lohman, David J.

Abstract

Butterflies are a diverse and charismatic insect group that are thought to have evolved with plants and dispersed throughout the world in response to key geological events. However, these hypotheses have not been extensively tested because a comprehensive phylogenetic framework and datasets for butterfly larval hosts and global distributions are lacking. We sequenced 391 genes from nearly 2,300 butterfly species, sampled from 90 countries and 28 specimen collections, to reconstruct a new phylogenomic tree of butterflies representing 92% of all genera. Our phylogeny has strong support for nearly all nodes and demonstrates that at least 36 butterfly tribes require reclassification. Divergence time analyses imply an origin ~100 million years ago for butterflies and indicate that all but one family were present before the K/Pg extinction event. We aggregated larval host datasets and global distribution records and found that butterflies are likely to have first fed on Fabaceae and originated in what is now the Americas. Soon after the Cretaceous Thermal Maximum, butterflies crossed Beringia and diversified in the Palaeotropics. Our results also reveal that most butterfly species are specialists that feed on only one larval host plant family. However, generalist butterflies that consume two or more plant families usually feed on closely related plants.

Published
2023

21. Predicting Spring Phenology in Deciduous Broadleaf Forests: An Open Community Forecast Challenge

Author

Wheeler, Kathryn, primary, Dietze, Michael, additional, LeBauer, David, additional, Peters, Jody, additional, Richardson, Andrew D., additional, Thomas, R. Quinn, additional, Zhu, Kai, additional, Bhat, Uttam, additional, Munch, Stephan, additional, Buzbee, Raphaela Floreani, additional, Chen, Min, additional, Goldstein, Benjamin, additional, Guo, Jessica S., additional, Hao, Dalei, additional, Jones, Chris, additional, Kelly-Fair, Mira, additional, Liu, Haoran, additional, Malmborg, Charlotte, additional, Neupane, Naresh, additional, Pal, Debasmita, additional, Ross, Arun, additional, Shirey, Vaughn, additional, Song, Yiluan, additional, Steen, McKalee, additional, Vance, Eric A., additional, Woelmer, Whitney M., additional, Wynne, Jacob, additional, and Zachmann, Luke, additional

Published
2023
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22. Predicting Spring Phenology in Deciduous Broadleaf Forests: Neon Phenology Forecasting Community Challenge

Author

Wheeler, Kathryn, primary, Dietze, Michael, additional, LeBauer, David, additional, Peters, Jody, additional, Richardson, Andrew D., additional, Ross, Arun, additional, Thomas, R. Quinn, additional, Zhu, Kai, additional, Bhat, Uttam, additional, Munch, Stephan, additional, Floreani Buzbee, Raphaela, additional, Chen, Min, additional, Goldstein, Benjamin, additional, Guo, Jessica S., additional, Hao, Dalei, additional, Jones, Chris, additional, Kelly-Fair, Mira, additional, Liu, Haoran, additional, Malmborg, Charlotte, additional, Neupane, Naresh, additional, Pal, Debasmita, additional, Shirey, Vaughn, additional, Song, Yiluan, additional, Steen, McKalee, additional, Vance, Eric A., additional, Woelmer, Whitney M., additional, Wynne, Jacob, additional, and Zachmann, Luke, additional

Published
2023
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25. A protocol for reproducible functional diversity analyses

Author

Palacio, Facundo X., primary, Callaghan, Corey T., additional, Cardoso, Pedro, additional, Hudgins, Emma J., additional, Jarzyna, Marta A., additional, Ottaviani, Gianluigi, additional, Riva, Federico, additional, Graco‐Roza, Caio, additional, Shirey, Vaughn, additional, and Mammola, Stefano, additional

Published
2022
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28. Evolution and Diversification Dynamics of Butterflies

Author

Kawahara, Akito Y., primary, Storer, Caroline, additional, Carvalho, Ana Paula S., additional, Plotkin, David M., additional, Condamine, Fabien, additional, Braga, Mariana P., additional, Ellis, Emily A., additional, St Laurent, Ryan A., additional, Li, Xuankun, additional, Barve, Vijay, additional, Cai, Liming, additional, Earl, Chandra, additional, Frandsen, Paul B., additional, Owens, Hannah L., additional, Valencia-Montoya, Wendy A., additional, Aduse-Poku, Kwaku, additional, Toussaint, Emmanuel F. A., additional, Dexter, Kelly M., additional, Doleck, Tenzing, additional, Markee, Amanda, additional, Messcher, Rebeccah, additional, Nguyen, Y-Lan, additional, Badon, Jade Aster T., additional, Benítez, Hugo A., additional, Braby, Michael F., additional, Buenavente, Perry A. C., additional, Chan, Wei-Ping, additional, Collins, Steve C., additional, Childers, Richard A. Rabideau, additional, Dankowicz, Even, additional, Eastwood, Rod, additional, Fric, Zdenek F., additional, Gott, Riley J., additional, Hall, Jason P. W., additional, Hallwachs, Winnie, additional, Hardy, Nate B., additional, Sipe, Rachel L. Hawkins, additional, Heath, Alan, additional, Hinolan, Jomar D., additional, Homziak, Nicholas T., additional, Hsu, Yu-Feng, additional, Inayoshi, Yutaka, additional, Itliong, Micael G.A., additional, Janzen, Daniel H., additional, Kitching, Ian J., additional, Kunte, Krushnamegh, additional, Lamas, Gerardo, additional, Landis, Michael J., additional, Larsen, Elise A., additional, Larsen, Torben B., additional, Leong, Jing V., additional, Lukhtanov, Vladimir, additional, Maier, Crystal A., additional, Martinez, Jose I., additional, Martins, Dino J., additional, Maruyama, Kiyoshi, additional, Maunsell, Sarah C., additional, Mega, Nicolás Oliveira, additional, Monastyrskii, Alexander, additional, Morais, Ana B. B., additional, Müller, Chris J., additional, Naive, Mark Arcebal K., additional, Nielsen, Gregory, additional, Padrón, Pablo Sebastián, additional, Peggie, Djunijanti, additional, Romanowski, Helena Piccoli, additional, Sáfián, Szabolcs, additional, Saito, Motoki, additional, Schröder, Stefan, additional, Shirey, Vaughn, additional, Soltis, Doug, additional, Soltis, Pamela, additional, Sourakov, Andrei, additional, Talavera, Gerard, additional, Vila, Roger, additional, Vlasanek, Petr, additional, Wang, Houshuai, additional, Warren, Andrew D., additional, Willmott, Keith R., additional, Yago, Masaya, additional, Jetz, Walter, additional, Jarzyna, Marta A., additional, Breinholt, Jesse W., additional, Espeland, Marianne, additional, Ries, Leslie, additional, Guralnick, Robert P., additional, Pierce, Naomi E., additional, and Lohman, David J., additional

Published
2022
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30. Occupancy–detection models with museum specimen data: Promise and pitfalls.

Author

Shirey, Vaughn, Khelifa, Rassim, M'Gonigle, Leithen K., and Guzman, Laura Melissa

Subjects
HISTORICAL museums, MUSEUMS, COLLECTING of accounts
Abstract

Copyright of Methods in Ecology & Evolution is the property of Wiley-Blackwell and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)

Published
2023
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31. Phenological research based on natural history collections: Practical guidelines and a lepidopteran case study.

Author

Belitz, Michael W., Larsen, Elise A., Shirey, Vaughn, Li, Daijiang, and Guralnick, Robert P.

Subjects
NATURAL history, BUTTERFLIES, PLANT phenology, MOTHS, MIGRATORY animals, DATA scrubbing, DIAPAUSE
Abstract

Natural history collections (NHCs) have been indispensable to understanding longer‐term trends of the timing of seasonal events. Massive‐scale digitization of specimens promises to further enable phenological research, especially the ability to move towards a deeper understanding of drivers of change and how trait–environment interactions shape phenological sensitivity.Despite the promise of NHCs to answer fundamental phenology questions, the use of these data resources presents unique and often overlooked challenges requiring specialized workflow steps, such as assembling multisource data, accounting for date imprecision and making decisions about trade‐offs between data density and spatial resolution.We provide a set of key best practice recommendations and showcase these via a case study that utilizes NHC data to test hypotheses about spatiotemporal trends in adult Lepidoptera (i.e. butterflies and moths) flight timing across North America. Our case study is a worked example of these best practices, helping practitioners recognize and overcome potential pitfalls at each step, from data acquisition and cleaning, to delineating spatial units and proper estimation of phenological metrics and associated uncertainty, to building appropriate models.We confirm and extend the critical importance of voltinism and diapause strategy, but less‐so daily activity patterns, for predicting Lepidoptera phenology spatiotemporal trends. Our case study also showcases the unique power of NHC data to test existing hypotheses and generate new insights about temporal phenological trends. Specifically, migratory species and species that enter diapause as adults are advancing the start of flight periods in more recent years, even after accounting for climate context. These results highlight the physiological and adaptive differences between species with different overwintering strategies.We close by noting the value of partnerships between data scientists, museum experts and ecological modellers to fully harness the power of digital data resources to address pressing global change challenges. These partnerships can extend approaches for integrating multiple data types to fully unlock our understanding of the tempo, mode, drivers and outcomes of phenological changes at greater spatial, temporal and taxonomic scales. Read the free Plain Language Summary for this article on the Journal blog. [ABSTRACT FROM AUTHOR]

Published
2023
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32. A protocol for reproducible functional diversity analyses

Author

Palacio, Facundo, primary, Callaghan, Corey, additional, Cardoso, Pedro, additional, Hudgins, Emma, additional, Jarzyna, Marta, additional, Ottaviani, Gianluigi, additional, Riva, Federico, additional, Graco-Roza, Caio, additional, Shirey, Vaughn, additional, and Mammola, Stefano, additional

Published
2021
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40. Figure 1 from: Cardoso P, Shirey V, Seppälä S, Henriques S, Draney M, Foord S, Gibbons A, Gomez L, Kariko S, Malumbres-Olarte J, Milne M, Vink C (2019) Globally distributed occurrences utilised in 200 spider species conservation profiles (Arachnida, Araneae). Biodiversity Data Journal 7: e33264. https://doi.org/10.3897/BDJ.7.e33264

Author

Cardoso, Pedro, primary, Shirey, Vaughn, additional, Seppälä, Sini, additional, Henriques, Sergio, additional, Draney, Michael, additional, Foord, Stefan, additional, Gibbons, Alastair, additional, Gomez, Luz, additional, Kariko, Sarah, additional, Malumbres-Olarte, Jagoba, additional, Milne, Marc, additional, and Vink, Cor, additional

Published
2019
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41. Figure 4 from: Cardoso P, Shirey V, Seppälä S, Henriques S, Draney M, Foord S, Gibbons A, Gomez L, Kariko S, Malumbres-Olarte J, Milne M, Vink C (2019) Globally distributed occurrences utilised in 200 spider species conservation profiles (Arachnida, Araneae). Biodiversity Data Journal 7: e33264. https://doi.org/10.3897/BDJ.7.e33264

Author

Cardoso, Pedro, primary, Shirey, Vaughn, additional, Seppälä, Sini, additional, Henriques, Sergio, additional, Draney, Michael, additional, Foord, Stefan, additional, Gibbons, Alastair, additional, Gomez, Luz, additional, Kariko, Sarah, additional, Malumbres-Olarte, Jagoba, additional, Milne, Marc, additional, and Vink, Cor, additional

Published
2019
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42. Figure 2 from: Cardoso P, Shirey V, Seppälä S, Henriques S, Draney M, Foord S, Gibbons A, Gomez L, Kariko S, Malumbres-Olarte J, Milne M, Vink C (2019) Globally distributed occurrences utilised in 200 spider species conservation profiles (Arachnida, Araneae). Biodiversity Data Journal 7: e33264. https://doi.org/10.3897/BDJ.7.e33264

Author

Cardoso, Pedro, primary, Shirey, Vaughn, additional, Seppälä, Sini, additional, Henriques, Sergio, additional, Draney, Michael, additional, Foord, Stefan, additional, Gibbons, Alastair, additional, Gomez, Luz, additional, Kariko, Sarah, additional, Malumbres-Olarte, Jagoba, additional, Milne, Marc, additional, and Vink, Cor, additional

Published
2019
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43. Figure 6 from: Cardoso P, Shirey V, Seppälä S, Henriques S, Draney M, Foord S, Gibbons A, Gomez L, Kariko S, Malumbres-Olarte J, Milne M, Vink C (2019) Globally distributed occurrences utilised in 200 spider species conservation profiles (Arachnida, Araneae). Biodiversity Data Journal 7: e33264. https://doi.org/10.3897/BDJ.7.e33264

Author

Cardoso, Pedro, primary, Shirey, Vaughn, additional, Seppälä, Sini, additional, Henriques, Sergio, additional, Draney, Michael, additional, Foord, Stefan, additional, Gibbons, Alastair, additional, Gomez, Luz, additional, Kariko, Sarah, additional, Malumbres-Olarte, Jagoba, additional, Milne, Marc, additional, and Vink, Cor, additional

Published
2019
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44. Figure 3 from: Cardoso P, Shirey V, Seppälä S, Henriques S, Draney M, Foord S, Gibbons A, Gomez L, Kariko S, Malumbres-Olarte J, Milne M, Vink C (2019) Globally distributed occurrences utilised in 200 spider species conservation profiles (Arachnida, Araneae). Biodiversity Data Journal 7: e33264. https://doi.org/10.3897/BDJ.7.e33264

Author

Cardoso, Pedro, primary, Shirey, Vaughn, additional, Seppälä, Sini, additional, Henriques, Sergio, additional, Draney, Michael, additional, Foord, Stefan, additional, Gibbons, Alastair, additional, Gomez, Luz, additional, Kariko, Sarah, additional, Malumbres-Olarte, Jagoba, additional, Milne, Marc, additional, and Vink, Cor, additional

Published
2019
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45. Figure 7 from: Cardoso P, Shirey V, Seppälä S, Henriques S, Draney M, Foord S, Gibbons A, Gomez L, Kariko S, Malumbres-Olarte J, Milne M, Vink C (2019) Globally distributed occurrences utilised in 200 spider species conservation profiles (Arachnida, Araneae). Biodiversity Data Journal 7: e33264. https://doi.org/10.3897/BDJ.7.e33264

Author

Cardoso, Pedro, primary, Shirey, Vaughn, additional, Seppälä, Sini, additional, Henriques, Sergio, additional, Draney, Michael, additional, Foord, Stefan, additional, Gibbons, Alastair, additional, Gomez, Luz, additional, Kariko, Sarah, additional, Malumbres-Olarte, Jagoba, additional, Milne, Marc, additional, and Vink, Cor, additional

Published
2019
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46. Globally distributed occurrences utilised in 200 spider species conservation profiles (Arachnida, Araneae)

Author

Cardoso, Pedro, primary, Shirey, Vaughn, additional, Seppälä, Sini, additional, Henriques, Sergio, additional, Draney, Michael, additional, Foord, Stefan, additional, Gibbons, Alastair, additional, Gomez, Luz, additional, Kariko, Sarah, additional, Malumbres-Olarte, Jagoba, additional, Milne, Marc, additional, and Vink, Cor, additional

Published
2019
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47. Figure 5 from: Cardoso P, Shirey V, Seppälä S, Henriques S, Draney M, Foord S, Gibbons A, Gomez L, Kariko S, Malumbres-Olarte J, Milne M, Vink C (2019) Globally distributed occurrences utilised in 200 spider species conservation profiles (Arachnida, Araneae). Biodiversity Data Journal 7: e33264. https://doi.org/10.3897/BDJ.7.e33264

Author

Cardoso, Pedro, primary, Shirey, Vaughn, additional, Seppälä, Sini, additional, Henriques, Sergio, additional, Draney, Michael, additional, Foord, Stefan, additional, Gibbons, Alastair, additional, Gomez, Luz, additional, Kariko, Sarah, additional, Malumbres-Olarte, Jagoba, additional, Milne, Marc, additional, and Vink, Cor, additional

Published
2019
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48. Figure 8 from: Cardoso P, Shirey V, Seppälä S, Henriques S, Draney M, Foord S, Gibbons A, Gomez L, Kariko S, Malumbres-Olarte J, Milne M, Vink C (2019) Globally distributed occurrences utilised in 200 spider species conservation profiles (Arachnida, Araneae). Biodiversity Data Journal 7: e33264. https://doi.org/10.3897/BDJ.7.e33264

Author

Cardoso, Pedro, primary, Shirey, Vaughn, additional, Seppälä, Sini, additional, Henriques, Sergio, additional, Draney, Michael, additional, Foord, Stefan, additional, Gibbons, Alastair, additional, Gomez, Luz, additional, Kariko, Sarah, additional, Malumbres-Olarte, Jagoba, additional, Milne, Marc, additional, and Vink, Cor, additional

Published
2019
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49. Figure 4 from: Seltmann K, Lafia S, Paul D, James S, Bloom D, Rios N, Ellis S, Farrell U, Utrup J, Yost M, Davis E, Emery R, Motz G, Kimmig J, Shirey V, Sandall E, Park D, Tyrrell C, Thackurdeen R, Collins M, O'Leary V, Prestridge H, Evelyn C, Nyberg B (2018) Georeferencing for Research Use (GRU): An integrated geospatial training paradigm for biocollections researchers and data providers. Research Ideas and Outcomes 4: e32449. https://doi.org/10.3897/rio.4.e32449

Author

Seltmann, Katja, primary, Lafia, Sara, additional, Paul, Deborah, additional, James, Shelley, additional, Bloom, David, additional, Rios, Nelson, additional, Ellis, Shari, additional, Farrell, Una, additional, Utrup, Jessica, additional, Yost, Michael, additional, Davis, Edward, additional, Emery, Rob, additional, Motz, Gary, additional, Kimmig, Julien, additional, Shirey, Vaughn, additional, Sandall, Emily, additional, Park, Daniel, additional, Tyrrell, Christopher, additional, Thackurdeen, R. Sean, additional, Collins, Matthew, additional, O'Leary, Vincent, additional, Prestridge, Heather, additional, Evelyn, Christopher, additional, and Nyberg, Ben, additional

Published
2018
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50. Supplementary material 4 from: Seltmann K, Lafia S, Paul D, James S, Bloom D, Rios N, Ellis S, Farrell U, Utrup J, Yost M, Davis E, Emery R, Motz G, Kimmig J, Shirey V, Sandall E, Park D, Tyrrell C, Thackurdeen R, Collins M, O'Leary V, Prestridge H, Evelyn C, Nyberg B (2018) Georeferencing for Research Use (GRU): An integrated geospatial training paradigm for biocollections researchers and data providers. Research Ideas and Outcomes 4: e32449. https://doi.org/10.3897/rio.4.e32449

Author

Seltmann, Katja, primary, Lafia, Sara, additional, Paul, Deborah, additional, James, Shelley, additional, Bloom, David, additional, Rios, Nelson, additional, Ellis, Shari, additional, Farrell, Una, additional, Utrup, Jessica, additional, Yost, Michael, additional, Davis, Edward, additional, Emery, Rob, additional, Motz, Gary, additional, Kimmig, Julien, additional, Shirey, Vaughn, additional, Sandall, Emily, additional, Park, Daniel, additional, Tyrrell, Christopher, additional, Thackurdeen, R. Sean, additional, Collins, Matthew, additional, O'Leary, Vincent, additional, Prestridge, Heather, additional, Evelyn, Christopher, additional, and Nyberg, Ben, additional

Published
2018
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